scipy 1.16.2__cp313-cp313-win_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp313-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp313-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp313-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp313-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp313-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp313-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp313-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp313-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp313-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp313-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp313-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp313-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp313-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp313-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp313-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp313-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp313-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp313-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp313-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp313-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp313-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp313-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp313-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp313-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp313-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp313-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp313-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp313-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp313-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp313-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp313-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp313-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp313-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp313-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp313-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp313-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp313-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp313-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp313-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp313-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp313-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp313-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp313-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp313-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp313-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp313-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp313-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp313-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp313-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp313-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
  322. scipy/interpolate/rbf.py +18 -0
  323. scipy/interpolate/tests/__init__.py +0 -0
  324. scipy/interpolate/tests/data/bug-1310.npz +0 -0
  325. scipy/interpolate/tests/data/estimate_gradients_hang.npy +0 -0
  326. scipy/interpolate/tests/data/gcvspl.npz +0 -0
  327. scipy/interpolate/tests/test_bary_rational.py +368 -0
  328. scipy/interpolate/tests/test_bsplines.py +3754 -0
  329. scipy/interpolate/tests/test_fitpack.py +519 -0
  330. scipy/interpolate/tests/test_fitpack2.py +1431 -0
  331. scipy/interpolate/tests/test_gil.py +64 -0
  332. scipy/interpolate/tests/test_interpnd.py +452 -0
  333. scipy/interpolate/tests/test_interpolate.py +2630 -0
  334. scipy/interpolate/tests/test_ndgriddata.py +308 -0
  335. scipy/interpolate/tests/test_pade.py +107 -0
  336. scipy/interpolate/tests/test_polyint.py +972 -0
  337. scipy/interpolate/tests/test_rbf.py +246 -0
  338. scipy/interpolate/tests/test_rbfinterp.py +534 -0
  339. scipy/interpolate/tests/test_rgi.py +1151 -0
  340. scipy/io/__init__.py +116 -0
  341. scipy/io/_fast_matrix_market/__init__.py +600 -0
  342. scipy/io/_fast_matrix_market/_fmm_core.cp313-win_arm64.lib +0 -0
  343. scipy/io/_fast_matrix_market/_fmm_core.cp313-win_arm64.pyd +0 -0
  344. scipy/io/_fortran.py +354 -0
  345. scipy/io/_harwell_boeing/__init__.py +7 -0
  346. scipy/io/_harwell_boeing/_fortran_format_parser.py +316 -0
  347. scipy/io/_harwell_boeing/hb.py +571 -0
  348. scipy/io/_harwell_boeing/tests/__init__.py +0 -0
  349. scipy/io/_harwell_boeing/tests/test_fortran_format.py +74 -0
  350. scipy/io/_harwell_boeing/tests/test_hb.py +70 -0
  351. scipy/io/_idl.py +917 -0
  352. scipy/io/_mmio.py +968 -0
  353. scipy/io/_netcdf.py +1104 -0
  354. scipy/io/_test_fortran.cp313-win_arm64.lib +0 -0
  355. scipy/io/_test_fortran.cp313-win_arm64.pyd +0 -0
  356. scipy/io/arff/__init__.py +28 -0
  357. scipy/io/arff/_arffread.py +873 -0
  358. scipy/io/arff/arffread.py +19 -0
  359. scipy/io/arff/tests/__init__.py +0 -0
  360. scipy/io/arff/tests/data/iris.arff +225 -0
  361. scipy/io/arff/tests/data/missing.arff +8 -0
  362. scipy/io/arff/tests/data/nodata.arff +11 -0
  363. scipy/io/arff/tests/data/quoted_nominal.arff +13 -0
  364. scipy/io/arff/tests/data/quoted_nominal_spaces.arff +13 -0
  365. scipy/io/arff/tests/data/test1.arff +10 -0
  366. scipy/io/arff/tests/data/test10.arff +8 -0
  367. scipy/io/arff/tests/data/test11.arff +11 -0
  368. scipy/io/arff/tests/data/test2.arff +15 -0
  369. scipy/io/arff/tests/data/test3.arff +6 -0
  370. scipy/io/arff/tests/data/test4.arff +11 -0
  371. scipy/io/arff/tests/data/test5.arff +26 -0
  372. scipy/io/arff/tests/data/test6.arff +12 -0
  373. scipy/io/arff/tests/data/test7.arff +15 -0
  374. scipy/io/arff/tests/data/test8.arff +12 -0
  375. scipy/io/arff/tests/data/test9.arff +14 -0
  376. scipy/io/arff/tests/test_arffread.py +421 -0
  377. scipy/io/harwell_boeing.py +17 -0
  378. scipy/io/idl.py +17 -0
  379. scipy/io/matlab/__init__.py +66 -0
  380. scipy/io/matlab/_byteordercodes.py +75 -0
  381. scipy/io/matlab/_mio.py +375 -0
  382. scipy/io/matlab/_mio4.py +632 -0
  383. scipy/io/matlab/_mio5.py +901 -0
  384. scipy/io/matlab/_mio5_params.py +281 -0
  385. scipy/io/matlab/_mio5_utils.cp313-win_arm64.lib +0 -0
  386. scipy/io/matlab/_mio5_utils.cp313-win_arm64.pyd +0 -0
  387. scipy/io/matlab/_mio_utils.cp313-win_arm64.lib +0 -0
  388. scipy/io/matlab/_mio_utils.cp313-win_arm64.pyd +0 -0
  389. scipy/io/matlab/_miobase.py +435 -0
  390. scipy/io/matlab/_streams.cp313-win_arm64.lib +0 -0
  391. scipy/io/matlab/_streams.cp313-win_arm64.pyd +0 -0
  392. scipy/io/matlab/byteordercodes.py +17 -0
  393. scipy/io/matlab/mio.py +16 -0
  394. scipy/io/matlab/mio4.py +17 -0
  395. scipy/io/matlab/mio5.py +19 -0
  396. scipy/io/matlab/mio5_params.py +18 -0
  397. scipy/io/matlab/mio5_utils.py +17 -0
  398. scipy/io/matlab/mio_utils.py +17 -0
  399. scipy/io/matlab/miobase.py +16 -0
  400. scipy/io/matlab/streams.py +16 -0
  401. scipy/io/matlab/tests/__init__.py +0 -0
  402. scipy/io/matlab/tests/data/bad_miuint32.mat +0 -0
  403. scipy/io/matlab/tests/data/bad_miutf8_array_name.mat +0 -0
  404. scipy/io/matlab/tests/data/big_endian.mat +0 -0
  405. scipy/io/matlab/tests/data/broken_utf8.mat +0 -0
  406. scipy/io/matlab/tests/data/corrupted_zlib_checksum.mat +0 -0
  407. scipy/io/matlab/tests/data/corrupted_zlib_data.mat +0 -0
  408. scipy/io/matlab/tests/data/debigged_m4.mat +0 -0
  409. scipy/io/matlab/tests/data/japanese_utf8.txt +5 -0
  410. scipy/io/matlab/tests/data/little_endian.mat +0 -0
  411. scipy/io/matlab/tests/data/logical_sparse.mat +0 -0
  412. scipy/io/matlab/tests/data/malformed1.mat +0 -0
  413. scipy/io/matlab/tests/data/miuint32_for_miint32.mat +0 -0
  414. scipy/io/matlab/tests/data/miutf8_array_name.mat +0 -0
  415. scipy/io/matlab/tests/data/nasty_duplicate_fieldnames.mat +0 -0
  416. scipy/io/matlab/tests/data/one_by_zero_char.mat +0 -0
  417. scipy/io/matlab/tests/data/parabola.mat +0 -0
  418. scipy/io/matlab/tests/data/single_empty_string.mat +0 -0
  419. scipy/io/matlab/tests/data/some_functions.mat +0 -0
  420. scipy/io/matlab/tests/data/sqr.mat +0 -0
  421. scipy/io/matlab/tests/data/test3dmatrix_6.1_SOL2.mat +0 -0
  422. scipy/io/matlab/tests/data/test3dmatrix_6.5.1_GLNX86.mat +0 -0
  423. scipy/io/matlab/tests/data/test3dmatrix_7.1_GLNX86.mat +0 -0
  424. scipy/io/matlab/tests/data/test3dmatrix_7.4_GLNX86.mat +0 -0
  425. scipy/io/matlab/tests/data/test_empty_struct.mat +0 -0
  426. scipy/io/matlab/tests/data/test_mat4_le_floats.mat +0 -0
  427. scipy/io/matlab/tests/data/test_skip_variable.mat +0 -0
  428. scipy/io/matlab/tests/data/testbool_8_WIN64.mat +0 -0
  429. scipy/io/matlab/tests/data/testcell_6.1_SOL2.mat +0 -0
  430. scipy/io/matlab/tests/data/testcell_6.5.1_GLNX86.mat +0 -0
  431. scipy/io/matlab/tests/data/testcell_7.1_GLNX86.mat +0 -0
  432. scipy/io/matlab/tests/data/testcell_7.4_GLNX86.mat +0 -0
  433. scipy/io/matlab/tests/data/testcellnest_6.1_SOL2.mat +0 -0
  434. scipy/io/matlab/tests/data/testcellnest_6.5.1_GLNX86.mat +0 -0
  435. scipy/io/matlab/tests/data/testcellnest_7.1_GLNX86.mat +0 -0
  436. scipy/io/matlab/tests/data/testcellnest_7.4_GLNX86.mat +0 -0
  437. scipy/io/matlab/tests/data/testcomplex_4.2c_SOL2.mat +0 -0
  438. scipy/io/matlab/tests/data/testcomplex_6.1_SOL2.mat +0 -0
  439. scipy/io/matlab/tests/data/testcomplex_6.5.1_GLNX86.mat +0 -0
  440. scipy/io/matlab/tests/data/testcomplex_7.1_GLNX86.mat +0 -0
  441. scipy/io/matlab/tests/data/testcomplex_7.4_GLNX86.mat +0 -0
  442. scipy/io/matlab/tests/data/testdouble_4.2c_SOL2.mat +0 -0
  443. scipy/io/matlab/tests/data/testdouble_6.1_SOL2.mat +0 -0
  444. scipy/io/matlab/tests/data/testdouble_6.5.1_GLNX86.mat +0 -0
  445. scipy/io/matlab/tests/data/testdouble_7.1_GLNX86.mat +0 -0
  446. scipy/io/matlab/tests/data/testdouble_7.4_GLNX86.mat +0 -0
  447. scipy/io/matlab/tests/data/testemptycell_5.3_SOL2.mat +0 -0
  448. scipy/io/matlab/tests/data/testemptycell_6.5.1_GLNX86.mat +0 -0
  449. scipy/io/matlab/tests/data/testemptycell_7.1_GLNX86.mat +0 -0
  450. scipy/io/matlab/tests/data/testemptycell_7.4_GLNX86.mat +0 -0
  451. scipy/io/matlab/tests/data/testfunc_7.4_GLNX86.mat +0 -0
  452. scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat +0 -0
  453. scipy/io/matlab/tests/data/testmatrix_4.2c_SOL2.mat +0 -0
  454. scipy/io/matlab/tests/data/testmatrix_6.1_SOL2.mat +0 -0
  455. scipy/io/matlab/tests/data/testmatrix_6.5.1_GLNX86.mat +0 -0
  456. scipy/io/matlab/tests/data/testmatrix_7.1_GLNX86.mat +0 -0
  457. scipy/io/matlab/tests/data/testmatrix_7.4_GLNX86.mat +0 -0
  458. scipy/io/matlab/tests/data/testminus_4.2c_SOL2.mat +0 -0
  459. scipy/io/matlab/tests/data/testminus_6.1_SOL2.mat +0 -0
  460. scipy/io/matlab/tests/data/testminus_6.5.1_GLNX86.mat +0 -0
  461. scipy/io/matlab/tests/data/testminus_7.1_GLNX86.mat +0 -0
  462. scipy/io/matlab/tests/data/testminus_7.4_GLNX86.mat +0 -0
  463. scipy/io/matlab/tests/data/testmulti_4.2c_SOL2.mat +0 -0
  464. scipy/io/matlab/tests/data/testmulti_7.1_GLNX86.mat +0 -0
  465. scipy/io/matlab/tests/data/testmulti_7.4_GLNX86.mat +0 -0
  466. scipy/io/matlab/tests/data/testobject_6.1_SOL2.mat +0 -0
  467. scipy/io/matlab/tests/data/testobject_6.5.1_GLNX86.mat +0 -0
  468. scipy/io/matlab/tests/data/testobject_7.1_GLNX86.mat +0 -0
  469. scipy/io/matlab/tests/data/testobject_7.4_GLNX86.mat +0 -0
  470. scipy/io/matlab/tests/data/testonechar_4.2c_SOL2.mat +0 -0
  471. scipy/io/matlab/tests/data/testonechar_6.1_SOL2.mat +0 -0
  472. scipy/io/matlab/tests/data/testonechar_6.5.1_GLNX86.mat +0 -0
  473. scipy/io/matlab/tests/data/testonechar_7.1_GLNX86.mat +0 -0
  474. scipy/io/matlab/tests/data/testonechar_7.4_GLNX86.mat +0 -0
  475. scipy/io/matlab/tests/data/testscalarcell_7.4_GLNX86.mat +0 -0
  476. scipy/io/matlab/tests/data/testsimplecell.mat +0 -0
  477. scipy/io/matlab/tests/data/testsparse_4.2c_SOL2.mat +0 -0
  478. scipy/io/matlab/tests/data/testsparse_6.1_SOL2.mat +0 -0
  479. scipy/io/matlab/tests/data/testsparse_6.5.1_GLNX86.mat +0 -0
  480. scipy/io/matlab/tests/data/testsparse_7.1_GLNX86.mat +0 -0
  481. scipy/io/matlab/tests/data/testsparse_7.4_GLNX86.mat +0 -0
  482. scipy/io/matlab/tests/data/testsparsecomplex_4.2c_SOL2.mat +0 -0
  483. scipy/io/matlab/tests/data/testsparsecomplex_6.1_SOL2.mat +0 -0
  484. scipy/io/matlab/tests/data/testsparsecomplex_6.5.1_GLNX86.mat +0 -0
  485. scipy/io/matlab/tests/data/testsparsecomplex_7.1_GLNX86.mat +0 -0
  486. scipy/io/matlab/tests/data/testsparsecomplex_7.4_GLNX86.mat +0 -0
  487. scipy/io/matlab/tests/data/testsparsefloat_7.4_GLNX86.mat +0 -0
  488. scipy/io/matlab/tests/data/teststring_4.2c_SOL2.mat +0 -0
  489. scipy/io/matlab/tests/data/teststring_6.1_SOL2.mat +0 -0
  490. scipy/io/matlab/tests/data/teststring_6.5.1_GLNX86.mat +0 -0
  491. scipy/io/matlab/tests/data/teststring_7.1_GLNX86.mat +0 -0
  492. scipy/io/matlab/tests/data/teststring_7.4_GLNX86.mat +0 -0
  493. scipy/io/matlab/tests/data/teststringarray_4.2c_SOL2.mat +0 -0
  494. scipy/io/matlab/tests/data/teststringarray_6.1_SOL2.mat +0 -0
  495. scipy/io/matlab/tests/data/teststringarray_6.5.1_GLNX86.mat +0 -0
  496. scipy/io/matlab/tests/data/teststringarray_7.1_GLNX86.mat +0 -0
  497. scipy/io/matlab/tests/data/teststringarray_7.4_GLNX86.mat +0 -0
  498. scipy/io/matlab/tests/data/teststruct_6.1_SOL2.mat +0 -0
  499. scipy/io/matlab/tests/data/teststruct_6.5.1_GLNX86.mat +0 -0
  500. scipy/io/matlab/tests/data/teststruct_7.1_GLNX86.mat +0 -0
  501. scipy/io/matlab/tests/data/teststruct_7.4_GLNX86.mat +0 -0
  502. scipy/io/matlab/tests/data/teststructarr_6.1_SOL2.mat +0 -0
  503. scipy/io/matlab/tests/data/teststructarr_6.5.1_GLNX86.mat +0 -0
  504. scipy/io/matlab/tests/data/teststructarr_7.1_GLNX86.mat +0 -0
  505. scipy/io/matlab/tests/data/teststructarr_7.4_GLNX86.mat +0 -0
  506. scipy/io/matlab/tests/data/teststructnest_6.1_SOL2.mat +0 -0
  507. scipy/io/matlab/tests/data/teststructnest_6.5.1_GLNX86.mat +0 -0
  508. scipy/io/matlab/tests/data/teststructnest_7.1_GLNX86.mat +0 -0
  509. scipy/io/matlab/tests/data/teststructnest_7.4_GLNX86.mat +0 -0
  510. scipy/io/matlab/tests/data/testunicode_7.1_GLNX86.mat +0 -0
  511. scipy/io/matlab/tests/data/testunicode_7.4_GLNX86.mat +0 -0
  512. scipy/io/matlab/tests/data/testvec_4_GLNX86.mat +0 -0
  513. scipy/io/matlab/tests/test_byteordercodes.py +29 -0
  514. scipy/io/matlab/tests/test_mio.py +1399 -0
  515. scipy/io/matlab/tests/test_mio5_utils.py +179 -0
  516. scipy/io/matlab/tests/test_mio_funcs.py +51 -0
  517. scipy/io/matlab/tests/test_mio_utils.py +45 -0
  518. scipy/io/matlab/tests/test_miobase.py +32 -0
  519. scipy/io/matlab/tests/test_pathological.py +33 -0
  520. scipy/io/matlab/tests/test_streams.py +241 -0
  521. scipy/io/mmio.py +17 -0
  522. scipy/io/netcdf.py +17 -0
  523. scipy/io/tests/__init__.py +0 -0
  524. scipy/io/tests/data/Transparent Busy.ani +0 -0
  525. scipy/io/tests/data/array_float32_1d.sav +0 -0
  526. scipy/io/tests/data/array_float32_2d.sav +0 -0
  527. scipy/io/tests/data/array_float32_3d.sav +0 -0
  528. scipy/io/tests/data/array_float32_4d.sav +0 -0
  529. scipy/io/tests/data/array_float32_5d.sav +0 -0
  530. scipy/io/tests/data/array_float32_6d.sav +0 -0
  531. scipy/io/tests/data/array_float32_7d.sav +0 -0
  532. scipy/io/tests/data/array_float32_8d.sav +0 -0
  533. scipy/io/tests/data/array_float32_pointer_1d.sav +0 -0
  534. scipy/io/tests/data/array_float32_pointer_2d.sav +0 -0
  535. scipy/io/tests/data/array_float32_pointer_3d.sav +0 -0
  536. scipy/io/tests/data/array_float32_pointer_4d.sav +0 -0
  537. scipy/io/tests/data/array_float32_pointer_5d.sav +0 -0
  538. scipy/io/tests/data/array_float32_pointer_6d.sav +0 -0
  539. scipy/io/tests/data/array_float32_pointer_7d.sav +0 -0
  540. scipy/io/tests/data/array_float32_pointer_8d.sav +0 -0
  541. scipy/io/tests/data/example_1.nc +0 -0
  542. scipy/io/tests/data/example_2.nc +0 -0
  543. scipy/io/tests/data/example_3_maskedvals.nc +0 -0
  544. scipy/io/tests/data/fortran-3x3d-2i.dat +0 -0
  545. scipy/io/tests/data/fortran-mixed.dat +0 -0
  546. scipy/io/tests/data/fortran-sf8-11x1x10.dat +0 -0
  547. scipy/io/tests/data/fortran-sf8-15x10x22.dat +0 -0
  548. scipy/io/tests/data/fortran-sf8-1x1x1.dat +0 -0
  549. scipy/io/tests/data/fortran-sf8-1x1x5.dat +0 -0
  550. scipy/io/tests/data/fortran-sf8-1x1x7.dat +0 -0
  551. scipy/io/tests/data/fortran-sf8-1x3x5.dat +0 -0
  552. scipy/io/tests/data/fortran-si4-11x1x10.dat +0 -0
  553. scipy/io/tests/data/fortran-si4-15x10x22.dat +0 -0
  554. scipy/io/tests/data/fortran-si4-1x1x1.dat +0 -0
  555. scipy/io/tests/data/fortran-si4-1x1x5.dat +0 -0
  556. scipy/io/tests/data/fortran-si4-1x1x7.dat +0 -0
  557. scipy/io/tests/data/fortran-si4-1x3x5.dat +0 -0
  558. scipy/io/tests/data/invalid_pointer.sav +0 -0
  559. scipy/io/tests/data/null_pointer.sav +0 -0
  560. scipy/io/tests/data/scalar_byte.sav +0 -0
  561. scipy/io/tests/data/scalar_byte_descr.sav +0 -0
  562. scipy/io/tests/data/scalar_complex32.sav +0 -0
  563. scipy/io/tests/data/scalar_complex64.sav +0 -0
  564. scipy/io/tests/data/scalar_float32.sav +0 -0
  565. scipy/io/tests/data/scalar_float64.sav +0 -0
  566. scipy/io/tests/data/scalar_heap_pointer.sav +0 -0
  567. scipy/io/tests/data/scalar_int16.sav +0 -0
  568. scipy/io/tests/data/scalar_int32.sav +0 -0
  569. scipy/io/tests/data/scalar_int64.sav +0 -0
  570. scipy/io/tests/data/scalar_string.sav +0 -0
  571. scipy/io/tests/data/scalar_uint16.sav +0 -0
  572. scipy/io/tests/data/scalar_uint32.sav +0 -0
  573. scipy/io/tests/data/scalar_uint64.sav +0 -0
  574. scipy/io/tests/data/struct_arrays.sav +0 -0
  575. scipy/io/tests/data/struct_arrays_byte_idl80.sav +0 -0
  576. scipy/io/tests/data/struct_arrays_replicated.sav +0 -0
  577. scipy/io/tests/data/struct_arrays_replicated_3d.sav +0 -0
  578. scipy/io/tests/data/struct_inherit.sav +0 -0
  579. scipy/io/tests/data/struct_pointer_arrays.sav +0 -0
  580. scipy/io/tests/data/struct_pointer_arrays_replicated.sav +0 -0
  581. scipy/io/tests/data/struct_pointer_arrays_replicated_3d.sav +0 -0
  582. scipy/io/tests/data/struct_pointers.sav +0 -0
  583. scipy/io/tests/data/struct_pointers_replicated.sav +0 -0
  584. scipy/io/tests/data/struct_pointers_replicated_3d.sav +0 -0
  585. scipy/io/tests/data/struct_scalars.sav +0 -0
  586. scipy/io/tests/data/struct_scalars_replicated.sav +0 -0
  587. scipy/io/tests/data/struct_scalars_replicated_3d.sav +0 -0
  588. scipy/io/tests/data/test-1234Hz-le-1ch-10S-20bit-extra.wav +0 -0
  589. scipy/io/tests/data/test-44100Hz-2ch-32bit-float-be.wav +0 -0
  590. scipy/io/tests/data/test-44100Hz-2ch-32bit-float-le.wav +0 -0
  591. scipy/io/tests/data/test-44100Hz-be-1ch-4bytes.wav +0 -0
  592. scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof-no-data.wav +0 -0
  593. scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof.wav +0 -0
  594. scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav +0 -0
  595. scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-rf64.wav +0 -0
  596. scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav +0 -0
  597. scipy/io/tests/data/test-48000Hz-2ch-64bit-float-le-wavex.wav +0 -0
  598. scipy/io/tests/data/test-8000Hz-be-3ch-5S-24bit.wav +0 -0
  599. scipy/io/tests/data/test-8000Hz-le-1ch-1byte-ulaw.wav +0 -0
  600. scipy/io/tests/data/test-8000Hz-le-2ch-1byteu.wav +0 -0
  601. scipy/io/tests/data/test-8000Hz-le-3ch-5S-24bit-inconsistent.wav +0 -0
  602. scipy/io/tests/data/test-8000Hz-le-3ch-5S-24bit-rf64.wav +0 -0
  603. scipy/io/tests/data/test-8000Hz-le-3ch-5S-24bit.wav +0 -0
  604. scipy/io/tests/data/test-8000Hz-le-3ch-5S-36bit.wav +0 -0
  605. scipy/io/tests/data/test-8000Hz-le-3ch-5S-45bit.wav +0 -0
  606. scipy/io/tests/data/test-8000Hz-le-3ch-5S-53bit.wav +0 -0
  607. scipy/io/tests/data/test-8000Hz-le-3ch-5S-64bit.wav +0 -0
  608. scipy/io/tests/data/test-8000Hz-le-4ch-9S-12bit.wav +0 -0
  609. scipy/io/tests/data/test-8000Hz-le-5ch-9S-5bit.wav +0 -0
  610. scipy/io/tests/data/various_compressed.sav +0 -0
  611. scipy/io/tests/test_fortran.py +264 -0
  612. scipy/io/tests/test_idl.py +483 -0
  613. scipy/io/tests/test_mmio.py +831 -0
  614. scipy/io/tests/test_netcdf.py +550 -0
  615. scipy/io/tests/test_paths.py +93 -0
  616. scipy/io/tests/test_wavfile.py +501 -0
  617. scipy/io/wavfile.py +938 -0
  618. scipy/linalg/__init__.pxd +1 -0
  619. scipy/linalg/__init__.py +236 -0
  620. scipy/linalg/_basic.py +2146 -0
  621. scipy/linalg/_blas_subroutines.h +164 -0
  622. scipy/linalg/_cythonized_array_utils.cp313-win_arm64.lib +0 -0
  623. scipy/linalg/_cythonized_array_utils.cp313-win_arm64.pyd +0 -0
  624. scipy/linalg/_cythonized_array_utils.pxd +40 -0
  625. scipy/linalg/_cythonized_array_utils.pyi +16 -0
  626. scipy/linalg/_decomp.py +1645 -0
  627. scipy/linalg/_decomp_cholesky.py +413 -0
  628. scipy/linalg/_decomp_cossin.py +236 -0
  629. scipy/linalg/_decomp_interpolative.cp313-win_arm64.lib +0 -0
  630. scipy/linalg/_decomp_interpolative.cp313-win_arm64.pyd +0 -0
  631. scipy/linalg/_decomp_ldl.py +356 -0
  632. scipy/linalg/_decomp_lu.py +401 -0
  633. scipy/linalg/_decomp_lu_cython.cp313-win_arm64.lib +0 -0
  634. scipy/linalg/_decomp_lu_cython.cp313-win_arm64.pyd +0 -0
  635. scipy/linalg/_decomp_lu_cython.pyi +6 -0
  636. scipy/linalg/_decomp_polar.py +113 -0
  637. scipy/linalg/_decomp_qr.py +494 -0
  638. scipy/linalg/_decomp_qz.py +452 -0
  639. scipy/linalg/_decomp_schur.py +336 -0
  640. scipy/linalg/_decomp_svd.py +545 -0
  641. scipy/linalg/_decomp_update.cp313-win_arm64.lib +0 -0
  642. scipy/linalg/_decomp_update.cp313-win_arm64.pyd +0 -0
  643. scipy/linalg/_expm_frechet.py +417 -0
  644. scipy/linalg/_fblas.cp313-win_arm64.lib +0 -0
  645. scipy/linalg/_fblas.cp313-win_arm64.pyd +0 -0
  646. scipy/linalg/_flapack.cp313-win_arm64.lib +0 -0
  647. scipy/linalg/_flapack.cp313-win_arm64.pyd +0 -0
  648. scipy/linalg/_lapack_subroutines.h +1521 -0
  649. scipy/linalg/_linalg_pythran.cp313-win_arm64.lib +0 -0
  650. scipy/linalg/_linalg_pythran.cp313-win_arm64.pyd +0 -0
  651. scipy/linalg/_matfuncs.py +1050 -0
  652. scipy/linalg/_matfuncs_expm.cp313-win_arm64.lib +0 -0
  653. scipy/linalg/_matfuncs_expm.cp313-win_arm64.pyd +0 -0
  654. scipy/linalg/_matfuncs_expm.pyi +6 -0
  655. scipy/linalg/_matfuncs_inv_ssq.py +886 -0
  656. scipy/linalg/_matfuncs_schur_sqrtm.cp313-win_arm64.lib +0 -0
  657. scipy/linalg/_matfuncs_schur_sqrtm.cp313-win_arm64.pyd +0 -0
  658. scipy/linalg/_matfuncs_sqrtm.py +107 -0
  659. scipy/linalg/_matfuncs_sqrtm_triu.cp313-win_arm64.lib +0 -0
  660. scipy/linalg/_matfuncs_sqrtm_triu.cp313-win_arm64.pyd +0 -0
  661. scipy/linalg/_misc.py +191 -0
  662. scipy/linalg/_procrustes.py +113 -0
  663. scipy/linalg/_sketches.py +189 -0
  664. scipy/linalg/_solve_toeplitz.cp313-win_arm64.lib +0 -0
  665. scipy/linalg/_solve_toeplitz.cp313-win_arm64.pyd +0 -0
  666. scipy/linalg/_solvers.py +862 -0
  667. scipy/linalg/_special_matrices.py +1322 -0
  668. scipy/linalg/_testutils.py +65 -0
  669. scipy/linalg/basic.py +23 -0
  670. scipy/linalg/blas.py +495 -0
  671. scipy/linalg/cython_blas.cp313-win_arm64.lib +0 -0
  672. scipy/linalg/cython_blas.cp313-win_arm64.pyd +0 -0
  673. scipy/linalg/cython_blas.pxd +169 -0
  674. scipy/linalg/cython_blas.pyx +1432 -0
  675. scipy/linalg/cython_lapack.cp313-win_arm64.lib +0 -0
  676. scipy/linalg/cython_lapack.cp313-win_arm64.pyd +0 -0
  677. scipy/linalg/cython_lapack.pxd +1528 -0
  678. scipy/linalg/cython_lapack.pyx +12045 -0
  679. scipy/linalg/decomp.py +23 -0
  680. scipy/linalg/decomp_cholesky.py +21 -0
  681. scipy/linalg/decomp_lu.py +21 -0
  682. scipy/linalg/decomp_qr.py +20 -0
  683. scipy/linalg/decomp_schur.py +21 -0
  684. scipy/linalg/decomp_svd.py +21 -0
  685. scipy/linalg/interpolative.py +989 -0
  686. scipy/linalg/lapack.py +1081 -0
  687. scipy/linalg/matfuncs.py +23 -0
  688. scipy/linalg/misc.py +21 -0
  689. scipy/linalg/special_matrices.py +22 -0
  690. scipy/linalg/tests/__init__.py +0 -0
  691. scipy/linalg/tests/_cython_examples/extending.pyx +23 -0
  692. scipy/linalg/tests/_cython_examples/meson.build +34 -0
  693. scipy/linalg/tests/data/carex_15_data.npz +0 -0
  694. scipy/linalg/tests/data/carex_18_data.npz +0 -0
  695. scipy/linalg/tests/data/carex_19_data.npz +0 -0
  696. scipy/linalg/tests/data/carex_20_data.npz +0 -0
  697. scipy/linalg/tests/data/carex_6_data.npz +0 -0
  698. scipy/linalg/tests/data/gendare_20170120_data.npz +0 -0
  699. scipy/linalg/tests/test_basic.py +2074 -0
  700. scipy/linalg/tests/test_batch.py +588 -0
  701. scipy/linalg/tests/test_blas.py +1127 -0
  702. scipy/linalg/tests/test_cython_blas.py +118 -0
  703. scipy/linalg/tests/test_cython_lapack.py +22 -0
  704. scipy/linalg/tests/test_cythonized_array_utils.py +130 -0
  705. scipy/linalg/tests/test_decomp.py +3189 -0
  706. scipy/linalg/tests/test_decomp_cholesky.py +268 -0
  707. scipy/linalg/tests/test_decomp_cossin.py +314 -0
  708. scipy/linalg/tests/test_decomp_ldl.py +137 -0
  709. scipy/linalg/tests/test_decomp_lu.py +308 -0
  710. scipy/linalg/tests/test_decomp_polar.py +110 -0
  711. scipy/linalg/tests/test_decomp_update.py +1701 -0
  712. scipy/linalg/tests/test_extending.py +46 -0
  713. scipy/linalg/tests/test_fblas.py +607 -0
  714. scipy/linalg/tests/test_interpolative.py +232 -0
  715. scipy/linalg/tests/test_lapack.py +3620 -0
  716. scipy/linalg/tests/test_matfuncs.py +1125 -0
  717. scipy/linalg/tests/test_matmul_toeplitz.py +136 -0
  718. scipy/linalg/tests/test_procrustes.py +214 -0
  719. scipy/linalg/tests/test_sketches.py +118 -0
  720. scipy/linalg/tests/test_solve_toeplitz.py +150 -0
  721. scipy/linalg/tests/test_solvers.py +844 -0
  722. scipy/linalg/tests/test_special_matrices.py +636 -0
  723. scipy/misc/__init__.py +6 -0
  724. scipy/misc/common.py +6 -0
  725. scipy/misc/doccer.py +6 -0
  726. scipy/ndimage/__init__.py +174 -0
  727. scipy/ndimage/_ctest.cp313-win_arm64.lib +0 -0
  728. scipy/ndimage/_ctest.cp313-win_arm64.pyd +0 -0
  729. scipy/ndimage/_cytest.cp313-win_arm64.lib +0 -0
  730. scipy/ndimage/_cytest.cp313-win_arm64.pyd +0 -0
  731. scipy/ndimage/_delegators.py +303 -0
  732. scipy/ndimage/_filters.py +2422 -0
  733. scipy/ndimage/_fourier.py +306 -0
  734. scipy/ndimage/_interpolation.py +1033 -0
  735. scipy/ndimage/_measurements.py +1689 -0
  736. scipy/ndimage/_morphology.py +2634 -0
  737. scipy/ndimage/_nd_image.cp313-win_arm64.lib +0 -0
  738. scipy/ndimage/_nd_image.cp313-win_arm64.pyd +0 -0
  739. scipy/ndimage/_ndimage_api.py +16 -0
  740. scipy/ndimage/_ni_docstrings.py +214 -0
  741. scipy/ndimage/_ni_label.cp313-win_arm64.lib +0 -0
  742. scipy/ndimage/_ni_label.cp313-win_arm64.pyd +0 -0
  743. scipy/ndimage/_ni_support.py +139 -0
  744. scipy/ndimage/_rank_filter_1d.cp313-win_arm64.lib +0 -0
  745. scipy/ndimage/_rank_filter_1d.cp313-win_arm64.pyd +0 -0
  746. scipy/ndimage/_support_alternative_backends.py +84 -0
  747. scipy/ndimage/filters.py +27 -0
  748. scipy/ndimage/fourier.py +21 -0
  749. scipy/ndimage/interpolation.py +22 -0
  750. scipy/ndimage/measurements.py +24 -0
  751. scipy/ndimage/morphology.py +27 -0
  752. scipy/ndimage/tests/__init__.py +12 -0
  753. scipy/ndimage/tests/data/label_inputs.txt +21 -0
  754. scipy/ndimage/tests/data/label_results.txt +294 -0
  755. scipy/ndimage/tests/data/label_strels.txt +42 -0
  756. scipy/ndimage/tests/dots.png +0 -0
  757. scipy/ndimage/tests/test_c_api.py +102 -0
  758. scipy/ndimage/tests/test_datatypes.py +67 -0
  759. scipy/ndimage/tests/test_filters.py +3083 -0
  760. scipy/ndimage/tests/test_fourier.py +187 -0
  761. scipy/ndimage/tests/test_interpolation.py +1491 -0
  762. scipy/ndimage/tests/test_measurements.py +1592 -0
  763. scipy/ndimage/tests/test_morphology.py +2950 -0
  764. scipy/ndimage/tests/test_ni_support.py +78 -0
  765. scipy/ndimage/tests/test_splines.py +70 -0
  766. scipy/odr/__init__.py +131 -0
  767. scipy/odr/__odrpack.cp313-win_arm64.lib +0 -0
  768. scipy/odr/__odrpack.cp313-win_arm64.pyd +0 -0
  769. scipy/odr/_add_newdocs.py +34 -0
  770. scipy/odr/_models.py +315 -0
  771. scipy/odr/_odrpack.py +1154 -0
  772. scipy/odr/models.py +20 -0
  773. scipy/odr/odrpack.py +21 -0
  774. scipy/odr/tests/__init__.py +0 -0
  775. scipy/odr/tests/test_odr.py +607 -0
  776. scipy/optimize/__init__.pxd +1 -0
  777. scipy/optimize/__init__.py +460 -0
  778. scipy/optimize/_basinhopping.py +741 -0
  779. scipy/optimize/_bglu_dense.cp313-win_arm64.lib +0 -0
  780. scipy/optimize/_bglu_dense.cp313-win_arm64.pyd +0 -0
  781. scipy/optimize/_bracket.py +706 -0
  782. scipy/optimize/_chandrupatla.py +551 -0
  783. scipy/optimize/_cobyla_py.py +297 -0
  784. scipy/optimize/_cobyqa_py.py +72 -0
  785. scipy/optimize/_constraints.py +598 -0
  786. scipy/optimize/_dcsrch.py +728 -0
  787. scipy/optimize/_differentiable_functions.py +835 -0
  788. scipy/optimize/_differentialevolution.py +1970 -0
  789. scipy/optimize/_direct.cp313-win_arm64.lib +0 -0
  790. scipy/optimize/_direct.cp313-win_arm64.pyd +0 -0
  791. scipy/optimize/_direct_py.py +280 -0
  792. scipy/optimize/_dual_annealing.py +732 -0
  793. scipy/optimize/_elementwise.py +798 -0
  794. scipy/optimize/_group_columns.cp313-win_arm64.lib +0 -0
  795. scipy/optimize/_group_columns.cp313-win_arm64.pyd +0 -0
  796. scipy/optimize/_hessian_update_strategy.py +479 -0
  797. scipy/optimize/_highspy/__init__.py +0 -0
  798. scipy/optimize/_highspy/_core.cp313-win_arm64.lib +0 -0
  799. scipy/optimize/_highspy/_core.cp313-win_arm64.pyd +0 -0
  800. scipy/optimize/_highspy/_highs_options.cp313-win_arm64.lib +0 -0
  801. scipy/optimize/_highspy/_highs_options.cp313-win_arm64.pyd +0 -0
  802. scipy/optimize/_highspy/_highs_wrapper.py +338 -0
  803. scipy/optimize/_isotonic.py +157 -0
  804. scipy/optimize/_lbfgsb.cp313-win_arm64.lib +0 -0
  805. scipy/optimize/_lbfgsb.cp313-win_arm64.pyd +0 -0
  806. scipy/optimize/_lbfgsb_py.py +634 -0
  807. scipy/optimize/_linesearch.py +896 -0
  808. scipy/optimize/_linprog.py +733 -0
  809. scipy/optimize/_linprog_doc.py +1434 -0
  810. scipy/optimize/_linprog_highs.py +422 -0
  811. scipy/optimize/_linprog_ip.py +1141 -0
  812. scipy/optimize/_linprog_rs.py +572 -0
  813. scipy/optimize/_linprog_simplex.py +663 -0
  814. scipy/optimize/_linprog_util.py +1521 -0
  815. scipy/optimize/_lsap.cp313-win_arm64.lib +0 -0
  816. scipy/optimize/_lsap.cp313-win_arm64.pyd +0 -0
  817. scipy/optimize/_lsq/__init__.py +5 -0
  818. scipy/optimize/_lsq/bvls.py +183 -0
  819. scipy/optimize/_lsq/common.py +731 -0
  820. scipy/optimize/_lsq/dogbox.py +345 -0
  821. scipy/optimize/_lsq/givens_elimination.cp313-win_arm64.lib +0 -0
  822. scipy/optimize/_lsq/givens_elimination.cp313-win_arm64.pyd +0 -0
  823. scipy/optimize/_lsq/least_squares.py +1044 -0
  824. scipy/optimize/_lsq/lsq_linear.py +361 -0
  825. scipy/optimize/_lsq/trf.py +587 -0
  826. scipy/optimize/_lsq/trf_linear.py +249 -0
  827. scipy/optimize/_milp.py +394 -0
  828. scipy/optimize/_minimize.py +1199 -0
  829. scipy/optimize/_minpack.cp313-win_arm64.lib +0 -0
  830. scipy/optimize/_minpack.cp313-win_arm64.pyd +0 -0
  831. scipy/optimize/_minpack_py.py +1178 -0
  832. scipy/optimize/_moduleTNC.cp313-win_arm64.lib +0 -0
  833. scipy/optimize/_moduleTNC.cp313-win_arm64.pyd +0 -0
  834. scipy/optimize/_nnls.py +96 -0
  835. scipy/optimize/_nonlin.py +1634 -0
  836. scipy/optimize/_numdiff.py +963 -0
  837. scipy/optimize/_optimize.py +4169 -0
  838. scipy/optimize/_pava_pybind.cp313-win_arm64.lib +0 -0
  839. scipy/optimize/_pava_pybind.cp313-win_arm64.pyd +0 -0
  840. scipy/optimize/_qap.py +760 -0
  841. scipy/optimize/_remove_redundancy.py +522 -0
  842. scipy/optimize/_root.py +732 -0
  843. scipy/optimize/_root_scalar.py +538 -0
  844. scipy/optimize/_shgo.py +1606 -0
  845. scipy/optimize/_shgo_lib/__init__.py +0 -0
  846. scipy/optimize/_shgo_lib/_complex.py +1225 -0
  847. scipy/optimize/_shgo_lib/_vertex.py +460 -0
  848. scipy/optimize/_slsqp_py.py +603 -0
  849. scipy/optimize/_slsqplib.cp313-win_arm64.lib +0 -0
  850. scipy/optimize/_slsqplib.cp313-win_arm64.pyd +0 -0
  851. scipy/optimize/_spectral.py +260 -0
  852. scipy/optimize/_tnc.py +438 -0
  853. scipy/optimize/_trlib/__init__.py +12 -0
  854. scipy/optimize/_trlib/_trlib.cp313-win_arm64.lib +0 -0
  855. scipy/optimize/_trlib/_trlib.cp313-win_arm64.pyd +0 -0
  856. scipy/optimize/_trustregion.py +318 -0
  857. scipy/optimize/_trustregion_constr/__init__.py +6 -0
  858. scipy/optimize/_trustregion_constr/canonical_constraint.py +390 -0
  859. scipy/optimize/_trustregion_constr/equality_constrained_sqp.py +231 -0
  860. scipy/optimize/_trustregion_constr/minimize_trustregion_constr.py +584 -0
  861. scipy/optimize/_trustregion_constr/projections.py +411 -0
  862. scipy/optimize/_trustregion_constr/qp_subproblem.py +637 -0
  863. scipy/optimize/_trustregion_constr/report.py +49 -0
  864. scipy/optimize/_trustregion_constr/tests/__init__.py +0 -0
  865. scipy/optimize/_trustregion_constr/tests/test_canonical_constraint.py +296 -0
  866. scipy/optimize/_trustregion_constr/tests/test_nested_minimize.py +39 -0
  867. scipy/optimize/_trustregion_constr/tests/test_projections.py +214 -0
  868. scipy/optimize/_trustregion_constr/tests/test_qp_subproblem.py +645 -0
  869. scipy/optimize/_trustregion_constr/tests/test_report.py +34 -0
  870. scipy/optimize/_trustregion_constr/tr_interior_point.py +361 -0
  871. scipy/optimize/_trustregion_dogleg.py +122 -0
  872. scipy/optimize/_trustregion_exact.py +437 -0
  873. scipy/optimize/_trustregion_krylov.py +65 -0
  874. scipy/optimize/_trustregion_ncg.py +126 -0
  875. scipy/optimize/_tstutils.py +972 -0
  876. scipy/optimize/_zeros.cp313-win_arm64.lib +0 -0
  877. scipy/optimize/_zeros.cp313-win_arm64.pyd +0 -0
  878. scipy/optimize/_zeros_py.py +1475 -0
  879. scipy/optimize/cobyla.py +19 -0
  880. scipy/optimize/cython_optimize/__init__.py +133 -0
  881. scipy/optimize/cython_optimize/_zeros.cp313-win_arm64.lib +0 -0
  882. scipy/optimize/cython_optimize/_zeros.cp313-win_arm64.pyd +0 -0
  883. scipy/optimize/cython_optimize/_zeros.pxd +33 -0
  884. scipy/optimize/cython_optimize/c_zeros.pxd +26 -0
  885. scipy/optimize/cython_optimize.pxd +11 -0
  886. scipy/optimize/elementwise.py +38 -0
  887. scipy/optimize/lbfgsb.py +23 -0
  888. scipy/optimize/linesearch.py +18 -0
  889. scipy/optimize/minpack.py +27 -0
  890. scipy/optimize/minpack2.py +17 -0
  891. scipy/optimize/moduleTNC.py +19 -0
  892. scipy/optimize/nonlin.py +29 -0
  893. scipy/optimize/optimize.py +40 -0
  894. scipy/optimize/slsqp.py +22 -0
  895. scipy/optimize/tests/__init__.py +0 -0
  896. scipy/optimize/tests/_cython_examples/extending.pyx +43 -0
  897. scipy/optimize/tests/_cython_examples/meson.build +32 -0
  898. scipy/optimize/tests/test__basinhopping.py +535 -0
  899. scipy/optimize/tests/test__differential_evolution.py +1703 -0
  900. scipy/optimize/tests/test__dual_annealing.py +416 -0
  901. scipy/optimize/tests/test__linprog_clean_inputs.py +312 -0
  902. scipy/optimize/tests/test__numdiff.py +885 -0
  903. scipy/optimize/tests/test__remove_redundancy.py +228 -0
  904. scipy/optimize/tests/test__root.py +124 -0
  905. scipy/optimize/tests/test__shgo.py +1164 -0
  906. scipy/optimize/tests/test__spectral.py +226 -0
  907. scipy/optimize/tests/test_bracket.py +896 -0
  908. scipy/optimize/tests/test_chandrupatla.py +982 -0
  909. scipy/optimize/tests/test_cobyla.py +195 -0
  910. scipy/optimize/tests/test_cobyqa.py +252 -0
  911. scipy/optimize/tests/test_constraint_conversion.py +286 -0
  912. scipy/optimize/tests/test_constraints.py +255 -0
  913. scipy/optimize/tests/test_cython_optimize.py +92 -0
  914. scipy/optimize/tests/test_differentiable_functions.py +1025 -0
  915. scipy/optimize/tests/test_direct.py +321 -0
  916. scipy/optimize/tests/test_extending.py +28 -0
  917. scipy/optimize/tests/test_hessian_update_strategy.py +300 -0
  918. scipy/optimize/tests/test_isotonic_regression.py +167 -0
  919. scipy/optimize/tests/test_lbfgsb_hessinv.py +65 -0
  920. scipy/optimize/tests/test_lbfgsb_setulb.py +122 -0
  921. scipy/optimize/tests/test_least_squares.py +986 -0
  922. scipy/optimize/tests/test_linear_assignment.py +116 -0
  923. scipy/optimize/tests/test_linesearch.py +328 -0
  924. scipy/optimize/tests/test_linprog.py +2577 -0
  925. scipy/optimize/tests/test_lsq_common.py +297 -0
  926. scipy/optimize/tests/test_lsq_linear.py +287 -0
  927. scipy/optimize/tests/test_milp.py +459 -0
  928. scipy/optimize/tests/test_minimize_constrained.py +845 -0
  929. scipy/optimize/tests/test_minpack.py +1194 -0
  930. scipy/optimize/tests/test_nnls.py +469 -0
  931. scipy/optimize/tests/test_nonlin.py +572 -0
  932. scipy/optimize/tests/test_optimize.py +3344 -0
  933. scipy/optimize/tests/test_quadratic_assignment.py +455 -0
  934. scipy/optimize/tests/test_regression.py +40 -0
  935. scipy/optimize/tests/test_slsqp.py +645 -0
  936. scipy/optimize/tests/test_tnc.py +345 -0
  937. scipy/optimize/tests/test_trustregion.py +110 -0
  938. scipy/optimize/tests/test_trustregion_exact.py +351 -0
  939. scipy/optimize/tests/test_trustregion_krylov.py +170 -0
  940. scipy/optimize/tests/test_zeros.py +998 -0
  941. scipy/optimize/tnc.py +22 -0
  942. scipy/optimize/zeros.py +26 -0
  943. scipy/signal/__init__.py +316 -0
  944. scipy/signal/_arraytools.py +264 -0
  945. scipy/signal/_czt.py +575 -0
  946. scipy/signal/_delegators.py +568 -0
  947. scipy/signal/_filter_design.py +5893 -0
  948. scipy/signal/_fir_filter_design.py +1458 -0
  949. scipy/signal/_lti_conversion.py +534 -0
  950. scipy/signal/_ltisys.py +3546 -0
  951. scipy/signal/_max_len_seq.py +139 -0
  952. scipy/signal/_max_len_seq_inner.cp313-win_arm64.lib +0 -0
  953. scipy/signal/_max_len_seq_inner.cp313-win_arm64.pyd +0 -0
  954. scipy/signal/_peak_finding.py +1310 -0
  955. scipy/signal/_peak_finding_utils.cp313-win_arm64.lib +0 -0
  956. scipy/signal/_peak_finding_utils.cp313-win_arm64.pyd +0 -0
  957. scipy/signal/_polyutils.py +172 -0
  958. scipy/signal/_savitzky_golay.py +357 -0
  959. scipy/signal/_short_time_fft.py +2228 -0
  960. scipy/signal/_signal_api.py +30 -0
  961. scipy/signal/_signaltools.py +5309 -0
  962. scipy/signal/_sigtools.cp313-win_arm64.lib +0 -0
  963. scipy/signal/_sigtools.cp313-win_arm64.pyd +0 -0
  964. scipy/signal/_sosfilt.cp313-win_arm64.lib +0 -0
  965. scipy/signal/_sosfilt.cp313-win_arm64.pyd +0 -0
  966. scipy/signal/_spectral_py.py +2471 -0
  967. scipy/signal/_spline.cp313-win_arm64.lib +0 -0
  968. scipy/signal/_spline.cp313-win_arm64.pyd +0 -0
  969. scipy/signal/_spline.pyi +34 -0
  970. scipy/signal/_spline_filters.py +848 -0
  971. scipy/signal/_support_alternative_backends.py +73 -0
  972. scipy/signal/_upfirdn.py +219 -0
  973. scipy/signal/_upfirdn_apply.cp313-win_arm64.lib +0 -0
  974. scipy/signal/_upfirdn_apply.cp313-win_arm64.pyd +0 -0
  975. scipy/signal/_waveforms.py +687 -0
  976. scipy/signal/_wavelets.py +29 -0
  977. scipy/signal/bsplines.py +21 -0
  978. scipy/signal/filter_design.py +28 -0
  979. scipy/signal/fir_filter_design.py +21 -0
  980. scipy/signal/lti_conversion.py +20 -0
  981. scipy/signal/ltisys.py +25 -0
  982. scipy/signal/signaltools.py +27 -0
  983. scipy/signal/spectral.py +21 -0
  984. scipy/signal/spline.py +18 -0
  985. scipy/signal/tests/__init__.py +0 -0
  986. scipy/signal/tests/_scipy_spectral_test_shim.py +311 -0
  987. scipy/signal/tests/mpsig.py +122 -0
  988. scipy/signal/tests/test_array_tools.py +111 -0
  989. scipy/signal/tests/test_bsplines.py +365 -0
  990. scipy/signal/tests/test_cont2discrete.py +424 -0
  991. scipy/signal/tests/test_czt.py +221 -0
  992. scipy/signal/tests/test_dltisys.py +599 -0
  993. scipy/signal/tests/test_filter_design.py +4744 -0
  994. scipy/signal/tests/test_fir_filter_design.py +851 -0
  995. scipy/signal/tests/test_ltisys.py +1225 -0
  996. scipy/signal/tests/test_max_len_seq.py +71 -0
  997. scipy/signal/tests/test_peak_finding.py +915 -0
  998. scipy/signal/tests/test_result_type.py +51 -0
  999. scipy/signal/tests/test_savitzky_golay.py +363 -0
  1000. scipy/signal/tests/test_short_time_fft.py +1107 -0
  1001. scipy/signal/tests/test_signaltools.py +4735 -0
  1002. scipy/signal/tests/test_spectral.py +2141 -0
  1003. scipy/signal/tests/test_splines.py +427 -0
  1004. scipy/signal/tests/test_upfirdn.py +322 -0
  1005. scipy/signal/tests/test_waveforms.py +400 -0
  1006. scipy/signal/tests/test_wavelets.py +59 -0
  1007. scipy/signal/tests/test_windows.py +987 -0
  1008. scipy/signal/waveforms.py +20 -0
  1009. scipy/signal/wavelets.py +17 -0
  1010. scipy/signal/windows/__init__.py +52 -0
  1011. scipy/signal/windows/_windows.py +2513 -0
  1012. scipy/signal/windows/windows.py +23 -0
  1013. scipy/sparse/__init__.py +350 -0
  1014. scipy/sparse/_base.py +1613 -0
  1015. scipy/sparse/_bsr.py +880 -0
  1016. scipy/sparse/_compressed.py +1328 -0
  1017. scipy/sparse/_construct.py +1454 -0
  1018. scipy/sparse/_coo.py +1581 -0
  1019. scipy/sparse/_csc.py +367 -0
  1020. scipy/sparse/_csparsetools.cp313-win_arm64.lib +0 -0
  1021. scipy/sparse/_csparsetools.cp313-win_arm64.pyd +0 -0
  1022. scipy/sparse/_csr.py +558 -0
  1023. scipy/sparse/_data.py +569 -0
  1024. scipy/sparse/_dia.py +677 -0
  1025. scipy/sparse/_dok.py +669 -0
  1026. scipy/sparse/_extract.py +178 -0
  1027. scipy/sparse/_index.py +444 -0
  1028. scipy/sparse/_lil.py +632 -0
  1029. scipy/sparse/_matrix.py +169 -0
  1030. scipy/sparse/_matrix_io.py +167 -0
  1031. scipy/sparse/_sparsetools.cp313-win_arm64.lib +0 -0
  1032. scipy/sparse/_sparsetools.cp313-win_arm64.pyd +0 -0
  1033. scipy/sparse/_spfuncs.py +76 -0
  1034. scipy/sparse/_sputils.py +632 -0
  1035. scipy/sparse/base.py +24 -0
  1036. scipy/sparse/bsr.py +22 -0
  1037. scipy/sparse/compressed.py +20 -0
  1038. scipy/sparse/construct.py +38 -0
  1039. scipy/sparse/coo.py +23 -0
  1040. scipy/sparse/csc.py +22 -0
  1041. scipy/sparse/csgraph/__init__.py +210 -0
  1042. scipy/sparse/csgraph/_flow.cp313-win_arm64.lib +0 -0
  1043. scipy/sparse/csgraph/_flow.cp313-win_arm64.pyd +0 -0
  1044. scipy/sparse/csgraph/_laplacian.py +563 -0
  1045. scipy/sparse/csgraph/_matching.cp313-win_arm64.lib +0 -0
  1046. scipy/sparse/csgraph/_matching.cp313-win_arm64.pyd +0 -0
  1047. scipy/sparse/csgraph/_min_spanning_tree.cp313-win_arm64.lib +0 -0
  1048. scipy/sparse/csgraph/_min_spanning_tree.cp313-win_arm64.pyd +0 -0
  1049. scipy/sparse/csgraph/_reordering.cp313-win_arm64.lib +0 -0
  1050. scipy/sparse/csgraph/_reordering.cp313-win_arm64.pyd +0 -0
  1051. scipy/sparse/csgraph/_shortest_path.cp313-win_arm64.lib +0 -0
  1052. scipy/sparse/csgraph/_shortest_path.cp313-win_arm64.pyd +0 -0
  1053. scipy/sparse/csgraph/_tools.cp313-win_arm64.lib +0 -0
  1054. scipy/sparse/csgraph/_tools.cp313-win_arm64.pyd +0 -0
  1055. scipy/sparse/csgraph/_traversal.cp313-win_arm64.lib +0 -0
  1056. scipy/sparse/csgraph/_traversal.cp313-win_arm64.pyd +0 -0
  1057. scipy/sparse/csgraph/_validation.py +66 -0
  1058. scipy/sparse/csgraph/tests/__init__.py +0 -0
  1059. scipy/sparse/csgraph/tests/test_connected_components.py +119 -0
  1060. scipy/sparse/csgraph/tests/test_conversions.py +61 -0
  1061. scipy/sparse/csgraph/tests/test_flow.py +209 -0
  1062. scipy/sparse/csgraph/tests/test_graph_laplacian.py +368 -0
  1063. scipy/sparse/csgraph/tests/test_matching.py +307 -0
  1064. scipy/sparse/csgraph/tests/test_pydata_sparse.py +197 -0
  1065. scipy/sparse/csgraph/tests/test_reordering.py +70 -0
  1066. scipy/sparse/csgraph/tests/test_shortest_path.py +540 -0
  1067. scipy/sparse/csgraph/tests/test_spanning_tree.py +66 -0
  1068. scipy/sparse/csgraph/tests/test_traversal.py +148 -0
  1069. scipy/sparse/csr.py +22 -0
  1070. scipy/sparse/data.py +18 -0
  1071. scipy/sparse/dia.py +22 -0
  1072. scipy/sparse/dok.py +22 -0
  1073. scipy/sparse/extract.py +23 -0
  1074. scipy/sparse/lil.py +22 -0
  1075. scipy/sparse/linalg/__init__.py +148 -0
  1076. scipy/sparse/linalg/_dsolve/__init__.py +71 -0
  1077. scipy/sparse/linalg/_dsolve/_add_newdocs.py +147 -0
  1078. scipy/sparse/linalg/_dsolve/_superlu.cp313-win_arm64.lib +0 -0
  1079. scipy/sparse/linalg/_dsolve/_superlu.cp313-win_arm64.pyd +0 -0
  1080. scipy/sparse/linalg/_dsolve/linsolve.py +882 -0
  1081. scipy/sparse/linalg/_dsolve/tests/__init__.py +0 -0
  1082. scipy/sparse/linalg/_dsolve/tests/test_linsolve.py +928 -0
  1083. scipy/sparse/linalg/_eigen/__init__.py +22 -0
  1084. scipy/sparse/linalg/_eigen/_svds.py +540 -0
  1085. scipy/sparse/linalg/_eigen/_svds_doc.py +382 -0
  1086. scipy/sparse/linalg/_eigen/arpack/COPYING +45 -0
  1087. scipy/sparse/linalg/_eigen/arpack/__init__.py +20 -0
  1088. scipy/sparse/linalg/_eigen/arpack/_arpack.cp313-win_arm64.lib +0 -0
  1089. scipy/sparse/linalg/_eigen/arpack/_arpack.cp313-win_arm64.pyd +0 -0
  1090. scipy/sparse/linalg/_eigen/arpack/arpack.py +1706 -0
  1091. scipy/sparse/linalg/_eigen/arpack/tests/__init__.py +0 -0
  1092. scipy/sparse/linalg/_eigen/arpack/tests/test_arpack.py +717 -0
  1093. scipy/sparse/linalg/_eigen/lobpcg/__init__.py +16 -0
  1094. scipy/sparse/linalg/_eigen/lobpcg/lobpcg.py +1110 -0
  1095. scipy/sparse/linalg/_eigen/lobpcg/tests/__init__.py +0 -0
  1096. scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py +725 -0
  1097. scipy/sparse/linalg/_eigen/tests/__init__.py +0 -0
  1098. scipy/sparse/linalg/_eigen/tests/test_svds.py +886 -0
  1099. scipy/sparse/linalg/_expm_multiply.py +816 -0
  1100. scipy/sparse/linalg/_interface.py +920 -0
  1101. scipy/sparse/linalg/_isolve/__init__.py +20 -0
  1102. scipy/sparse/linalg/_isolve/_gcrotmk.py +503 -0
  1103. scipy/sparse/linalg/_isolve/iterative.py +1051 -0
  1104. scipy/sparse/linalg/_isolve/lgmres.py +230 -0
  1105. scipy/sparse/linalg/_isolve/lsmr.py +486 -0
  1106. scipy/sparse/linalg/_isolve/lsqr.py +589 -0
  1107. scipy/sparse/linalg/_isolve/minres.py +372 -0
  1108. scipy/sparse/linalg/_isolve/tests/__init__.py +0 -0
  1109. scipy/sparse/linalg/_isolve/tests/test_gcrotmk.py +183 -0
  1110. scipy/sparse/linalg/_isolve/tests/test_iterative.py +809 -0
  1111. scipy/sparse/linalg/_isolve/tests/test_lgmres.py +225 -0
  1112. scipy/sparse/linalg/_isolve/tests/test_lsmr.py +185 -0
  1113. scipy/sparse/linalg/_isolve/tests/test_lsqr.py +120 -0
  1114. scipy/sparse/linalg/_isolve/tests/test_minres.py +97 -0
  1115. scipy/sparse/linalg/_isolve/tests/test_utils.py +9 -0
  1116. scipy/sparse/linalg/_isolve/tfqmr.py +179 -0
  1117. scipy/sparse/linalg/_isolve/utils.py +121 -0
  1118. scipy/sparse/linalg/_matfuncs.py +940 -0
  1119. scipy/sparse/linalg/_norm.py +195 -0
  1120. scipy/sparse/linalg/_onenormest.py +467 -0
  1121. scipy/sparse/linalg/_propack/_cpropack.cp313-win_arm64.lib +0 -0
  1122. scipy/sparse/linalg/_propack/_cpropack.cp313-win_arm64.pyd +0 -0
  1123. scipy/sparse/linalg/_propack/_dpropack.cp313-win_arm64.lib +0 -0
  1124. scipy/sparse/linalg/_propack/_dpropack.cp313-win_arm64.pyd +0 -0
  1125. scipy/sparse/linalg/_propack/_spropack.cp313-win_arm64.lib +0 -0
  1126. scipy/sparse/linalg/_propack/_spropack.cp313-win_arm64.pyd +0 -0
  1127. scipy/sparse/linalg/_propack/_zpropack.cp313-win_arm64.lib +0 -0
  1128. scipy/sparse/linalg/_propack/_zpropack.cp313-win_arm64.pyd +0 -0
  1129. scipy/sparse/linalg/_special_sparse_arrays.py +949 -0
  1130. scipy/sparse/linalg/_svdp.py +309 -0
  1131. scipy/sparse/linalg/dsolve.py +22 -0
  1132. scipy/sparse/linalg/eigen.py +21 -0
  1133. scipy/sparse/linalg/interface.py +20 -0
  1134. scipy/sparse/linalg/isolve.py +22 -0
  1135. scipy/sparse/linalg/matfuncs.py +18 -0
  1136. scipy/sparse/linalg/tests/__init__.py +0 -0
  1137. scipy/sparse/linalg/tests/propack_test_data.npz +0 -0
  1138. scipy/sparse/linalg/tests/test_expm_multiply.py +367 -0
  1139. scipy/sparse/linalg/tests/test_interface.py +561 -0
  1140. scipy/sparse/linalg/tests/test_matfuncs.py +592 -0
  1141. scipy/sparse/linalg/tests/test_norm.py +154 -0
  1142. scipy/sparse/linalg/tests/test_onenormest.py +252 -0
  1143. scipy/sparse/linalg/tests/test_propack.py +165 -0
  1144. scipy/sparse/linalg/tests/test_pydata_sparse.py +272 -0
  1145. scipy/sparse/linalg/tests/test_special_sparse_arrays.py +337 -0
  1146. scipy/sparse/sparsetools.py +17 -0
  1147. scipy/sparse/spfuncs.py +17 -0
  1148. scipy/sparse/sputils.py +17 -0
  1149. scipy/sparse/tests/__init__.py +0 -0
  1150. scipy/sparse/tests/data/csc_py2.npz +0 -0
  1151. scipy/sparse/tests/data/csc_py3.npz +0 -0
  1152. scipy/sparse/tests/test_arithmetic1d.py +341 -0
  1153. scipy/sparse/tests/test_array_api.py +561 -0
  1154. scipy/sparse/tests/test_base.py +5870 -0
  1155. scipy/sparse/tests/test_common1d.py +447 -0
  1156. scipy/sparse/tests/test_construct.py +872 -0
  1157. scipy/sparse/tests/test_coo.py +1119 -0
  1158. scipy/sparse/tests/test_csc.py +98 -0
  1159. scipy/sparse/tests/test_csr.py +214 -0
  1160. scipy/sparse/tests/test_dok.py +209 -0
  1161. scipy/sparse/tests/test_extract.py +51 -0
  1162. scipy/sparse/tests/test_indexing1d.py +603 -0
  1163. scipy/sparse/tests/test_matrix_io.py +109 -0
  1164. scipy/sparse/tests/test_minmax1d.py +128 -0
  1165. scipy/sparse/tests/test_sparsetools.py +344 -0
  1166. scipy/sparse/tests/test_spfuncs.py +97 -0
  1167. scipy/sparse/tests/test_sputils.py +424 -0
  1168. scipy/spatial/__init__.py +129 -0
  1169. scipy/spatial/_ckdtree.cp313-win_arm64.lib +0 -0
  1170. scipy/spatial/_ckdtree.cp313-win_arm64.pyd +0 -0
  1171. scipy/spatial/_distance_pybind.cp313-win_arm64.lib +0 -0
  1172. scipy/spatial/_distance_pybind.cp313-win_arm64.pyd +0 -0
  1173. scipy/spatial/_distance_wrap.cp313-win_arm64.lib +0 -0
  1174. scipy/spatial/_distance_wrap.cp313-win_arm64.pyd +0 -0
  1175. scipy/spatial/_geometric_slerp.py +238 -0
  1176. scipy/spatial/_hausdorff.cp313-win_arm64.lib +0 -0
  1177. scipy/spatial/_hausdorff.cp313-win_arm64.pyd +0 -0
  1178. scipy/spatial/_kdtree.py +920 -0
  1179. scipy/spatial/_plotutils.py +274 -0
  1180. scipy/spatial/_procrustes.py +132 -0
  1181. scipy/spatial/_qhull.cp313-win_arm64.lib +0 -0
  1182. scipy/spatial/_qhull.cp313-win_arm64.pyd +0 -0
  1183. scipy/spatial/_qhull.pyi +213 -0
  1184. scipy/spatial/_spherical_voronoi.py +341 -0
  1185. scipy/spatial/_voronoi.cp313-win_arm64.lib +0 -0
  1186. scipy/spatial/_voronoi.cp313-win_arm64.pyd +0 -0
  1187. scipy/spatial/_voronoi.pyi +4 -0
  1188. scipy/spatial/ckdtree.py +18 -0
  1189. scipy/spatial/distance.py +3147 -0
  1190. scipy/spatial/distance.pyi +210 -0
  1191. scipy/spatial/kdtree.py +25 -0
  1192. scipy/spatial/qhull.py +25 -0
  1193. scipy/spatial/qhull_src/COPYING_QHULL.txt +39 -0
  1194. scipy/spatial/tests/__init__.py +0 -0
  1195. scipy/spatial/tests/data/cdist-X1.txt +10 -0
  1196. scipy/spatial/tests/data/cdist-X2.txt +20 -0
  1197. scipy/spatial/tests/data/degenerate_pointset.npz +0 -0
  1198. scipy/spatial/tests/data/iris.txt +150 -0
  1199. scipy/spatial/tests/data/pdist-boolean-inp.txt +20 -0
  1200. scipy/spatial/tests/data/pdist-chebyshev-ml-iris.txt +1 -0
  1201. scipy/spatial/tests/data/pdist-chebyshev-ml.txt +1 -0
  1202. scipy/spatial/tests/data/pdist-cityblock-ml-iris.txt +1 -0
  1203. scipy/spatial/tests/data/pdist-cityblock-ml.txt +1 -0
  1204. scipy/spatial/tests/data/pdist-correlation-ml-iris.txt +1 -0
  1205. scipy/spatial/tests/data/pdist-correlation-ml.txt +1 -0
  1206. scipy/spatial/tests/data/pdist-cosine-ml-iris.txt +1 -0
  1207. scipy/spatial/tests/data/pdist-cosine-ml.txt +1 -0
  1208. scipy/spatial/tests/data/pdist-double-inp.txt +20 -0
  1209. scipy/spatial/tests/data/pdist-euclidean-ml-iris.txt +1 -0
  1210. scipy/spatial/tests/data/pdist-euclidean-ml.txt +1 -0
  1211. scipy/spatial/tests/data/pdist-hamming-ml.txt +1 -0
  1212. scipy/spatial/tests/data/pdist-jaccard-ml.txt +1 -0
  1213. scipy/spatial/tests/data/pdist-jensenshannon-ml-iris.txt +1 -0
  1214. scipy/spatial/tests/data/pdist-jensenshannon-ml.txt +1 -0
  1215. scipy/spatial/tests/data/pdist-minkowski-3.2-ml-iris.txt +1 -0
  1216. scipy/spatial/tests/data/pdist-minkowski-3.2-ml.txt +1 -0
  1217. scipy/spatial/tests/data/pdist-minkowski-5.8-ml-iris.txt +1 -0
  1218. scipy/spatial/tests/data/pdist-seuclidean-ml-iris.txt +1 -0
  1219. scipy/spatial/tests/data/pdist-seuclidean-ml.txt +1 -0
  1220. scipy/spatial/tests/data/pdist-spearman-ml.txt +1 -0
  1221. scipy/spatial/tests/data/random-bool-data.txt +100 -0
  1222. scipy/spatial/tests/data/random-double-data.txt +100 -0
  1223. scipy/spatial/tests/data/random-int-data.txt +100 -0
  1224. scipy/spatial/tests/data/random-uint-data.txt +100 -0
  1225. scipy/spatial/tests/data/selfdual-4d-polytope.txt +27 -0
  1226. scipy/spatial/tests/test__plotutils.py +91 -0
  1227. scipy/spatial/tests/test__procrustes.py +116 -0
  1228. scipy/spatial/tests/test_distance.py +2389 -0
  1229. scipy/spatial/tests/test_hausdorff.py +199 -0
  1230. scipy/spatial/tests/test_kdtree.py +1536 -0
  1231. scipy/spatial/tests/test_qhull.py +1313 -0
  1232. scipy/spatial/tests/test_slerp.py +417 -0
  1233. scipy/spatial/tests/test_spherical_voronoi.py +358 -0
  1234. scipy/spatial/transform/__init__.py +31 -0
  1235. scipy/spatial/transform/_rigid_transform.cp313-win_arm64.lib +0 -0
  1236. scipy/spatial/transform/_rigid_transform.cp313-win_arm64.pyd +0 -0
  1237. scipy/spatial/transform/_rotation.cp313-win_arm64.lib +0 -0
  1238. scipy/spatial/transform/_rotation.cp313-win_arm64.pyd +0 -0
  1239. scipy/spatial/transform/_rotation_groups.py +140 -0
  1240. scipy/spatial/transform/_rotation_spline.py +460 -0
  1241. scipy/spatial/transform/rotation.py +21 -0
  1242. scipy/spatial/transform/tests/__init__.py +0 -0
  1243. scipy/spatial/transform/tests/test_rigid_transform.py +1221 -0
  1244. scipy/spatial/transform/tests/test_rotation.py +2569 -0
  1245. scipy/spatial/transform/tests/test_rotation_groups.py +169 -0
  1246. scipy/spatial/transform/tests/test_rotation_spline.py +183 -0
  1247. scipy/special/__init__.pxd +1 -0
  1248. scipy/special/__init__.py +841 -0
  1249. scipy/special/_add_newdocs.py +9961 -0
  1250. scipy/special/_basic.py +3576 -0
  1251. scipy/special/_comb.cp313-win_arm64.lib +0 -0
  1252. scipy/special/_comb.cp313-win_arm64.pyd +0 -0
  1253. scipy/special/_ellip_harm.py +214 -0
  1254. scipy/special/_ellip_harm_2.cp313-win_arm64.lib +0 -0
  1255. scipy/special/_ellip_harm_2.cp313-win_arm64.pyd +0 -0
  1256. scipy/special/_gufuncs.cp313-win_arm64.lib +0 -0
  1257. scipy/special/_gufuncs.cp313-win_arm64.pyd +0 -0
  1258. scipy/special/_input_validation.py +17 -0
  1259. scipy/special/_lambertw.py +149 -0
  1260. scipy/special/_logsumexp.py +426 -0
  1261. scipy/special/_mptestutils.py +453 -0
  1262. scipy/special/_multiufuncs.py +610 -0
  1263. scipy/special/_orthogonal.py +2592 -0
  1264. scipy/special/_orthogonal.pyi +330 -0
  1265. scipy/special/_precompute/__init__.py +0 -0
  1266. scipy/special/_precompute/cosine_cdf.py +17 -0
  1267. scipy/special/_precompute/expn_asy.py +54 -0
  1268. scipy/special/_precompute/gammainc_asy.py +116 -0
  1269. scipy/special/_precompute/gammainc_data.py +124 -0
  1270. scipy/special/_precompute/hyp2f1_data.py +484 -0
  1271. scipy/special/_precompute/lambertw.py +68 -0
  1272. scipy/special/_precompute/loggamma.py +43 -0
  1273. scipy/special/_precompute/struve_convergence.py +131 -0
  1274. scipy/special/_precompute/utils.py +38 -0
  1275. scipy/special/_precompute/wright_bessel.py +342 -0
  1276. scipy/special/_precompute/wright_bessel_data.py +152 -0
  1277. scipy/special/_precompute/wrightomega.py +41 -0
  1278. scipy/special/_precompute/zetac.py +27 -0
  1279. scipy/special/_sf_error.py +15 -0
  1280. scipy/special/_specfun.cp313-win_arm64.lib +0 -0
  1281. scipy/special/_specfun.cp313-win_arm64.pyd +0 -0
  1282. scipy/special/_special_ufuncs.cp313-win_arm64.lib +0 -0
  1283. scipy/special/_special_ufuncs.cp313-win_arm64.pyd +0 -0
  1284. scipy/special/_spfun_stats.py +106 -0
  1285. scipy/special/_spherical_bessel.py +397 -0
  1286. scipy/special/_support_alternative_backends.py +295 -0
  1287. scipy/special/_test_internal.cp313-win_arm64.lib +0 -0
  1288. scipy/special/_test_internal.cp313-win_arm64.pyd +0 -0
  1289. scipy/special/_test_internal.pyi +9 -0
  1290. scipy/special/_testutils.py +321 -0
  1291. scipy/special/_ufuncs.cp313-win_arm64.lib +0 -0
  1292. scipy/special/_ufuncs.cp313-win_arm64.pyd +0 -0
  1293. scipy/special/_ufuncs.pyi +522 -0
  1294. scipy/special/_ufuncs.pyx +13173 -0
  1295. scipy/special/_ufuncs_cxx.cp313-win_arm64.lib +0 -0
  1296. scipy/special/_ufuncs_cxx.cp313-win_arm64.pyd +0 -0
  1297. scipy/special/_ufuncs_cxx.pxd +142 -0
  1298. scipy/special/_ufuncs_cxx.pyx +427 -0
  1299. scipy/special/_ufuncs_cxx_defs.h +147 -0
  1300. scipy/special/_ufuncs_defs.h +57 -0
  1301. scipy/special/add_newdocs.py +15 -0
  1302. scipy/special/basic.py +87 -0
  1303. scipy/special/cython_special.cp313-win_arm64.lib +0 -0
  1304. scipy/special/cython_special.cp313-win_arm64.pyd +0 -0
  1305. scipy/special/cython_special.pxd +259 -0
  1306. scipy/special/cython_special.pyi +3 -0
  1307. scipy/special/orthogonal.py +45 -0
  1308. scipy/special/sf_error.py +20 -0
  1309. scipy/special/specfun.py +24 -0
  1310. scipy/special/spfun_stats.py +17 -0
  1311. scipy/special/tests/__init__.py +0 -0
  1312. scipy/special/tests/_cython_examples/extending.pyx +12 -0
  1313. scipy/special/tests/_cython_examples/meson.build +34 -0
  1314. scipy/special/tests/data/__init__.py +0 -0
  1315. scipy/special/tests/data/boost.npz +0 -0
  1316. scipy/special/tests/data/gsl.npz +0 -0
  1317. scipy/special/tests/data/local.npz +0 -0
  1318. scipy/special/tests/test_basic.py +4815 -0
  1319. scipy/special/tests/test_bdtr.py +112 -0
  1320. scipy/special/tests/test_boost_ufuncs.py +64 -0
  1321. scipy/special/tests/test_boxcox.py +125 -0
  1322. scipy/special/tests/test_cdflib.py +712 -0
  1323. scipy/special/tests/test_cdft_asymptotic.py +49 -0
  1324. scipy/special/tests/test_cephes_intp_cast.py +29 -0
  1325. scipy/special/tests/test_cosine_distr.py +83 -0
  1326. scipy/special/tests/test_cython_special.py +363 -0
  1327. scipy/special/tests/test_data.py +719 -0
  1328. scipy/special/tests/test_dd.py +42 -0
  1329. scipy/special/tests/test_digamma.py +45 -0
  1330. scipy/special/tests/test_ellip_harm.py +278 -0
  1331. scipy/special/tests/test_erfinv.py +89 -0
  1332. scipy/special/tests/test_exponential_integrals.py +118 -0
  1333. scipy/special/tests/test_extending.py +28 -0
  1334. scipy/special/tests/test_faddeeva.py +85 -0
  1335. scipy/special/tests/test_gamma.py +12 -0
  1336. scipy/special/tests/test_gammainc.py +152 -0
  1337. scipy/special/tests/test_hyp2f1.py +2566 -0
  1338. scipy/special/tests/test_hypergeometric.py +234 -0
  1339. scipy/special/tests/test_iv_ratio.py +249 -0
  1340. scipy/special/tests/test_kolmogorov.py +491 -0
  1341. scipy/special/tests/test_lambertw.py +109 -0
  1342. scipy/special/tests/test_legendre.py +1518 -0
  1343. scipy/special/tests/test_log1mexp.py +85 -0
  1344. scipy/special/tests/test_loggamma.py +70 -0
  1345. scipy/special/tests/test_logit.py +162 -0
  1346. scipy/special/tests/test_logsumexp.py +469 -0
  1347. scipy/special/tests/test_mpmath.py +2293 -0
  1348. scipy/special/tests/test_nan_inputs.py +65 -0
  1349. scipy/special/tests/test_ndtr.py +77 -0
  1350. scipy/special/tests/test_ndtri_exp.py +94 -0
  1351. scipy/special/tests/test_orthogonal.py +821 -0
  1352. scipy/special/tests/test_orthogonal_eval.py +275 -0
  1353. scipy/special/tests/test_owens_t.py +53 -0
  1354. scipy/special/tests/test_pcf.py +24 -0
  1355. scipy/special/tests/test_pdtr.py +48 -0
  1356. scipy/special/tests/test_powm1.py +65 -0
  1357. scipy/special/tests/test_precompute_expn_asy.py +24 -0
  1358. scipy/special/tests/test_precompute_gammainc.py +108 -0
  1359. scipy/special/tests/test_precompute_utils.py +36 -0
  1360. scipy/special/tests/test_round.py +18 -0
  1361. scipy/special/tests/test_sf_error.py +146 -0
  1362. scipy/special/tests/test_sici.py +36 -0
  1363. scipy/special/tests/test_specfun.py +48 -0
  1364. scipy/special/tests/test_spence.py +32 -0
  1365. scipy/special/tests/test_spfun_stats.py +61 -0
  1366. scipy/special/tests/test_sph_harm.py +85 -0
  1367. scipy/special/tests/test_spherical_bessel.py +400 -0
  1368. scipy/special/tests/test_support_alternative_backends.py +248 -0
  1369. scipy/special/tests/test_trig.py +72 -0
  1370. scipy/special/tests/test_ufunc_signatures.py +46 -0
  1371. scipy/special/tests/test_wright_bessel.py +205 -0
  1372. scipy/special/tests/test_wrightomega.py +117 -0
  1373. scipy/special/tests/test_zeta.py +301 -0
  1374. scipy/stats/__init__.py +670 -0
  1375. scipy/stats/_ansari_swilk_statistics.cp313-win_arm64.lib +0 -0
  1376. scipy/stats/_ansari_swilk_statistics.cp313-win_arm64.pyd +0 -0
  1377. scipy/stats/_axis_nan_policy.py +692 -0
  1378. scipy/stats/_biasedurn.cp313-win_arm64.lib +0 -0
  1379. scipy/stats/_biasedurn.cp313-win_arm64.pyd +0 -0
  1380. scipy/stats/_biasedurn.pxd +27 -0
  1381. scipy/stats/_binned_statistic.py +795 -0
  1382. scipy/stats/_binomtest.py +375 -0
  1383. scipy/stats/_bws_test.py +177 -0
  1384. scipy/stats/_censored_data.py +459 -0
  1385. scipy/stats/_common.py +5 -0
  1386. scipy/stats/_constants.py +42 -0
  1387. scipy/stats/_continued_fraction.py +387 -0
  1388. scipy/stats/_continuous_distns.py +12486 -0
  1389. scipy/stats/_correlation.py +210 -0
  1390. scipy/stats/_covariance.py +636 -0
  1391. scipy/stats/_crosstab.py +204 -0
  1392. scipy/stats/_discrete_distns.py +2098 -0
  1393. scipy/stats/_distn_infrastructure.py +4201 -0
  1394. scipy/stats/_distr_params.py +299 -0
  1395. scipy/stats/_distribution_infrastructure.py +5750 -0
  1396. scipy/stats/_entropy.py +428 -0
  1397. scipy/stats/_finite_differences.py +145 -0
  1398. scipy/stats/_fit.py +1351 -0
  1399. scipy/stats/_hypotests.py +2060 -0
  1400. scipy/stats/_kde.py +732 -0
  1401. scipy/stats/_ksstats.py +600 -0
  1402. scipy/stats/_levy_stable/__init__.py +1231 -0
  1403. scipy/stats/_levy_stable/levyst.cp313-win_arm64.lib +0 -0
  1404. scipy/stats/_levy_stable/levyst.cp313-win_arm64.pyd +0 -0
  1405. scipy/stats/_mannwhitneyu.py +492 -0
  1406. scipy/stats/_mgc.py +550 -0
  1407. scipy/stats/_morestats.py +4626 -0
  1408. scipy/stats/_mstats_basic.py +3658 -0
  1409. scipy/stats/_mstats_extras.py +521 -0
  1410. scipy/stats/_multicomp.py +449 -0
  1411. scipy/stats/_multivariate.py +7281 -0
  1412. scipy/stats/_new_distributions.py +452 -0
  1413. scipy/stats/_odds_ratio.py +466 -0
  1414. scipy/stats/_page_trend_test.py +486 -0
  1415. scipy/stats/_probability_distribution.py +1964 -0
  1416. scipy/stats/_qmc.py +2956 -0
  1417. scipy/stats/_qmc_cy.cp313-win_arm64.lib +0 -0
  1418. scipy/stats/_qmc_cy.cp313-win_arm64.pyd +0 -0
  1419. scipy/stats/_qmc_cy.pyi +54 -0
  1420. scipy/stats/_qmvnt.py +454 -0
  1421. scipy/stats/_qmvnt_cy.cp313-win_arm64.lib +0 -0
  1422. scipy/stats/_qmvnt_cy.cp313-win_arm64.pyd +0 -0
  1423. scipy/stats/_quantile.py +335 -0
  1424. scipy/stats/_rcont/__init__.py +4 -0
  1425. scipy/stats/_rcont/rcont.cp313-win_arm64.lib +0 -0
  1426. scipy/stats/_rcont/rcont.cp313-win_arm64.pyd +0 -0
  1427. scipy/stats/_relative_risk.py +263 -0
  1428. scipy/stats/_resampling.py +2352 -0
  1429. scipy/stats/_result_classes.py +40 -0
  1430. scipy/stats/_sampling.py +1314 -0
  1431. scipy/stats/_sensitivity_analysis.py +713 -0
  1432. scipy/stats/_sobol.cp313-win_arm64.lib +0 -0
  1433. scipy/stats/_sobol.cp313-win_arm64.pyd +0 -0
  1434. scipy/stats/_sobol.pyi +54 -0
  1435. scipy/stats/_sobol_direction_numbers.npz +0 -0
  1436. scipy/stats/_stats.cp313-win_arm64.lib +0 -0
  1437. scipy/stats/_stats.cp313-win_arm64.pyd +0 -0
  1438. scipy/stats/_stats.pxd +10 -0
  1439. scipy/stats/_stats_mstats_common.py +322 -0
  1440. scipy/stats/_stats_py.py +11089 -0
  1441. scipy/stats/_stats_pythran.cp313-win_arm64.lib +0 -0
  1442. scipy/stats/_stats_pythran.cp313-win_arm64.pyd +0 -0
  1443. scipy/stats/_survival.py +683 -0
  1444. scipy/stats/_tukeylambda_stats.py +199 -0
  1445. scipy/stats/_unuran/__init__.py +0 -0
  1446. scipy/stats/_unuran/unuran_wrapper.cp313-win_arm64.lib +0 -0
  1447. scipy/stats/_unuran/unuran_wrapper.cp313-win_arm64.pyd +0 -0
  1448. scipy/stats/_unuran/unuran_wrapper.pyi +179 -0
  1449. scipy/stats/_variation.py +126 -0
  1450. scipy/stats/_warnings_errors.py +38 -0
  1451. scipy/stats/_wilcoxon.py +265 -0
  1452. scipy/stats/biasedurn.py +16 -0
  1453. scipy/stats/contingency.py +521 -0
  1454. scipy/stats/distributions.py +24 -0
  1455. scipy/stats/kde.py +18 -0
  1456. scipy/stats/morestats.py +27 -0
  1457. scipy/stats/mstats.py +140 -0
  1458. scipy/stats/mstats_basic.py +42 -0
  1459. scipy/stats/mstats_extras.py +25 -0
  1460. scipy/stats/mvn.py +17 -0
  1461. scipy/stats/qmc.py +236 -0
  1462. scipy/stats/sampling.py +73 -0
  1463. scipy/stats/stats.py +41 -0
  1464. scipy/stats/tests/__init__.py +0 -0
  1465. scipy/stats/tests/common_tests.py +356 -0
  1466. scipy/stats/tests/data/_mvt.py +171 -0
  1467. scipy/stats/tests/data/fisher_exact_results_from_r.py +607 -0
  1468. scipy/stats/tests/data/jf_skew_t_gamlss_pdf_data.npy +0 -0
  1469. scipy/stats/tests/data/levy_stable/stable-Z1-cdf-sample-data.npy +0 -0
  1470. scipy/stats/tests/data/levy_stable/stable-Z1-pdf-sample-data.npy +0 -0
  1471. scipy/stats/tests/data/levy_stable/stable-loc-scale-sample-data.npy +0 -0
  1472. scipy/stats/tests/data/nist_anova/AtmWtAg.dat +108 -0
  1473. scipy/stats/tests/data/nist_anova/SiRstv.dat +85 -0
  1474. scipy/stats/tests/data/nist_anova/SmLs01.dat +249 -0
  1475. scipy/stats/tests/data/nist_anova/SmLs02.dat +1869 -0
  1476. scipy/stats/tests/data/nist_anova/SmLs03.dat +18069 -0
  1477. scipy/stats/tests/data/nist_anova/SmLs04.dat +249 -0
  1478. scipy/stats/tests/data/nist_anova/SmLs05.dat +1869 -0
  1479. scipy/stats/tests/data/nist_anova/SmLs06.dat +18069 -0
  1480. scipy/stats/tests/data/nist_anova/SmLs07.dat +249 -0
  1481. scipy/stats/tests/data/nist_anova/SmLs08.dat +1869 -0
  1482. scipy/stats/tests/data/nist_anova/SmLs09.dat +18069 -0
  1483. scipy/stats/tests/data/nist_linregress/Norris.dat +97 -0
  1484. scipy/stats/tests/data/rel_breitwigner_pdf_sample_data_ROOT.npy +0 -0
  1485. scipy/stats/tests/data/studentized_range_mpmath_ref.json +1499 -0
  1486. scipy/stats/tests/test_axis_nan_policy.py +1388 -0
  1487. scipy/stats/tests/test_binned_statistic.py +568 -0
  1488. scipy/stats/tests/test_censored_data.py +152 -0
  1489. scipy/stats/tests/test_contingency.py +294 -0
  1490. scipy/stats/tests/test_continued_fraction.py +173 -0
  1491. scipy/stats/tests/test_continuous.py +2198 -0
  1492. scipy/stats/tests/test_continuous_basic.py +1053 -0
  1493. scipy/stats/tests/test_continuous_fit_censored.py +683 -0
  1494. scipy/stats/tests/test_correlation.py +80 -0
  1495. scipy/stats/tests/test_crosstab.py +115 -0
  1496. scipy/stats/tests/test_discrete_basic.py +580 -0
  1497. scipy/stats/tests/test_discrete_distns.py +700 -0
  1498. scipy/stats/tests/test_distributions.py +10413 -0
  1499. scipy/stats/tests/test_entropy.py +322 -0
  1500. scipy/stats/tests/test_fast_gen_inversion.py +435 -0
  1501. scipy/stats/tests/test_fit.py +1090 -0
  1502. scipy/stats/tests/test_hypotests.py +1991 -0
  1503. scipy/stats/tests/test_kdeoth.py +676 -0
  1504. scipy/stats/tests/test_marray.py +289 -0
  1505. scipy/stats/tests/test_mgc.py +217 -0
  1506. scipy/stats/tests/test_morestats.py +3259 -0
  1507. scipy/stats/tests/test_mstats_basic.py +2071 -0
  1508. scipy/stats/tests/test_mstats_extras.py +172 -0
  1509. scipy/stats/tests/test_multicomp.py +405 -0
  1510. scipy/stats/tests/test_multivariate.py +4381 -0
  1511. scipy/stats/tests/test_odds_ratio.py +148 -0
  1512. scipy/stats/tests/test_qmc.py +1492 -0
  1513. scipy/stats/tests/test_quantile.py +199 -0
  1514. scipy/stats/tests/test_rank.py +345 -0
  1515. scipy/stats/tests/test_relative_risk.py +95 -0
  1516. scipy/stats/tests/test_resampling.py +2000 -0
  1517. scipy/stats/tests/test_sampling.py +1450 -0
  1518. scipy/stats/tests/test_sensitivity_analysis.py +310 -0
  1519. scipy/stats/tests/test_stats.py +9707 -0
  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,1450 @@
1
+ import threading
2
+ import pickle
3
+ import pytest
4
+ from copy import deepcopy
5
+ import platform
6
+ import sys
7
+ import math
8
+ import numpy as np
9
+ from numpy.testing import assert_allclose, assert_equal, suppress_warnings
10
+ from scipy.stats.sampling import (
11
+ TransformedDensityRejection,
12
+ DiscreteAliasUrn,
13
+ DiscreteGuideTable,
14
+ NumericalInversePolynomial,
15
+ NumericalInverseHermite,
16
+ RatioUniforms,
17
+ SimpleRatioUniforms,
18
+ UNURANError
19
+ )
20
+ from pytest import raises as assert_raises
21
+ from scipy import stats
22
+ from scipy import special
23
+ from scipy.stats import chisquare, cramervonmises
24
+ from scipy.stats._distr_params import distdiscrete, distcont
25
+ from scipy._lib._util import check_random_state
26
+
27
+
28
+ # common test data: this data can be shared between all the tests.
29
+
30
+
31
+ # Normal distribution shared between all the continuous methods
32
+ class StandardNormal:
33
+ def pdf(self, x):
34
+ # normalization constant needed for NumericalInverseHermite
35
+ return 1./np.sqrt(2.*np.pi) * np.exp(-0.5 * x*x)
36
+
37
+ def dpdf(self, x):
38
+ return 1./np.sqrt(2.*np.pi) * -x * np.exp(-0.5 * x*x)
39
+
40
+ def cdf(self, x):
41
+ return special.ndtr(x)
42
+
43
+
44
+ all_methods = [
45
+ ("TransformedDensityRejection", {"dist": StandardNormal()}),
46
+ ("DiscreteAliasUrn", {"dist": [0.02, 0.18, 0.8]}),
47
+ ("DiscreteGuideTable", {"dist": [0.02, 0.18, 0.8]}),
48
+ ("NumericalInversePolynomial", {"dist": StandardNormal()}),
49
+ ("NumericalInverseHermite", {"dist": StandardNormal()}),
50
+ ("SimpleRatioUniforms", {"dist": StandardNormal(), "mode": 0})
51
+ ]
52
+
53
+ if (sys.implementation.name == 'pypy'
54
+ and sys.implementation.version < (7, 3, 10)):
55
+ # changed in PyPy for v7.3.10
56
+ floaterr = r"unsupported operand type for float\(\): 'list'"
57
+ else:
58
+ floaterr = r"must be real number, not list"
59
+ # Make sure an internal error occurs in UNU.RAN when invalid callbacks are
60
+ # passed. Moreover, different generators throw different error messages.
61
+ # So, in case of an `UNURANError`, we do not validate the error message.
62
+ bad_pdfs_common = [
63
+ # Negative PDF
64
+ (lambda x: -x, UNURANError, r"..."),
65
+ # Returning wrong type
66
+ (lambda x: [], TypeError, floaterr),
67
+ # Undefined name inside the function
68
+ (lambda x: foo, NameError, r"name 'foo' is not defined"), # type: ignore[name-defined] # noqa: F821, E501
69
+ # Infinite value returned => Overflow error.
70
+ (lambda x: np.inf, UNURANError, r"..."),
71
+ # NaN value => internal error in UNU.RAN
72
+ (lambda x: np.nan, UNURANError, r"..."),
73
+ # signature of PDF wrong
74
+ (lambda: 1.0, TypeError, r"takes 0 positional arguments but 1 was given")
75
+ ]
76
+
77
+
78
+ # same approach for dpdf
79
+ bad_dpdf_common = [
80
+ # Infinite value returned.
81
+ (lambda x: np.inf, UNURANError, r"..."),
82
+ # NaN value => internal error in UNU.RAN
83
+ (lambda x: np.nan, UNURANError, r"..."),
84
+ # Returning wrong type
85
+ (lambda x: [], TypeError, floaterr),
86
+ # Undefined name inside the function
87
+ (lambda x: foo, NameError, r"name 'foo' is not defined"), # type: ignore[name-defined] # noqa: F821, E501
88
+ # signature of dPDF wrong
89
+ (lambda: 1.0, TypeError, r"takes 0 positional arguments but 1 was given")
90
+ ]
91
+
92
+
93
+ # same approach for logpdf
94
+ bad_logpdfs_common = [
95
+ # Returning wrong type
96
+ (lambda x: [], TypeError, floaterr),
97
+ # Undefined name inside the function
98
+ (lambda x: foo, NameError, r"name 'foo' is not defined"), # type: ignore[name-defined] # noqa: F821, E501
99
+ # Infinite value returned => Overflow error.
100
+ (lambda x: np.inf, UNURANError, r"..."),
101
+ # NaN value => internal error in UNU.RAN
102
+ (lambda x: np.nan, UNURANError, r"..."),
103
+ # signature of logpdf wrong
104
+ (lambda: 1.0, TypeError, r"takes 0 positional arguments but 1 was given")
105
+ ]
106
+
107
+
108
+ bad_pv_common = [
109
+ ([], r"must contain at least one element"),
110
+ ([[1.0, 0.0]], r"wrong number of dimensions \(expected 1, got 2\)"),
111
+ ([0.2, 0.4, np.nan, 0.8], r"must contain only finite / non-nan values"),
112
+ ([0.2, 0.4, np.inf, 0.8], r"must contain only finite / non-nan values"),
113
+ ([0.0, 0.0], r"must contain at least one non-zero value"),
114
+ ]
115
+
116
+
117
+ # size of the domains is incorrect
118
+ bad_sized_domains = [
119
+ # > 2 elements in the domain
120
+ ((1, 2, 3), ValueError, r"must be a length 2 tuple"),
121
+ # empty domain
122
+ ((), ValueError, r"must be a length 2 tuple")
123
+ ]
124
+
125
+ # domain values are incorrect
126
+ bad_domains = [
127
+ ((2, 1), UNURANError, r"left >= right"),
128
+ ((1, 1), UNURANError, r"left >= right"),
129
+ ]
130
+
131
+ # infinite and nan values present in domain.
132
+ inf_nan_domains = [
133
+ # left >= right
134
+ ((10, 10), UNURANError, r"left >= right"),
135
+ ((np.inf, np.inf), UNURANError, r"left >= right"),
136
+ ((-np.inf, -np.inf), UNURANError, r"left >= right"),
137
+ ((np.inf, -np.inf), UNURANError, r"left >= right"),
138
+ # Also include nans in some of the domains.
139
+ ((-np.inf, np.nan), ValueError, r"only non-nan values"),
140
+ ((np.nan, np.inf), ValueError, r"only non-nan values")
141
+ ]
142
+
143
+ # `nan` values present in domain. Some distributions don't support
144
+ # infinite tails, so don't mix the nan values with infinities.
145
+ nan_domains = [
146
+ ((0, np.nan), ValueError, r"only non-nan values"),
147
+ ((np.nan, np.nan), ValueError, r"only non-nan values")
148
+ ]
149
+
150
+
151
+ # all the methods should throw errors for nan, bad sized, and bad valued
152
+ # domains.
153
+ @pytest.mark.parametrize("domain, err, msg",
154
+ bad_domains + bad_sized_domains +
155
+ nan_domains) # type: ignore[operator]
156
+ @pytest.mark.parametrize("method, kwargs", all_methods)
157
+ def test_bad_domain(domain, err, msg, method, kwargs):
158
+ Method = getattr(stats.sampling, method)
159
+ with pytest.raises(err, match=msg):
160
+ Method(**kwargs, domain=domain)
161
+
162
+
163
+ @pytest.mark.parametrize("method, kwargs", all_methods)
164
+ def test_random_state(method, kwargs):
165
+ Method = getattr(stats.sampling, method)
166
+
167
+ # simple seed that works for any version of NumPy
168
+ seed = 123
169
+ rng1 = Method(**kwargs, random_state=seed)
170
+ rng2 = Method(**kwargs, random_state=seed)
171
+ assert_equal(rng1.rvs(100), rng2.rvs(100))
172
+
173
+ # global seed
174
+ rng = np.random.RandomState(123)
175
+ rng1 = Method(**kwargs)
176
+ rvs1 = rng1.rvs(100, random_state=rng)
177
+ np.random.seed(None)
178
+ rng2 = Method(**kwargs, random_state=123)
179
+ rvs2 = rng2.rvs(100)
180
+ assert_equal(rvs1, rvs2)
181
+
182
+ # Generator seed for new NumPy
183
+ # when a RandomState is given, it should take the bitgen_t
184
+ # member of the class and create a Generator instance.
185
+ seed1 = np.random.RandomState(np.random.MT19937(123))
186
+ seed2 = np.random.Generator(np.random.MT19937(123))
187
+ rng1 = Method(**kwargs, random_state=seed1)
188
+ rng2 = Method(**kwargs, random_state=seed2)
189
+ assert_equal(rng1.rvs(100), rng2.rvs(100))
190
+
191
+
192
+ def test_set_random_state():
193
+ rng1 = TransformedDensityRejection(StandardNormal(), random_state=123)
194
+ rng2 = TransformedDensityRejection(StandardNormal())
195
+ rng2.set_random_state(123)
196
+ assert_equal(rng1.rvs(100), rng2.rvs(100))
197
+ rng = TransformedDensityRejection(StandardNormal(), random_state=123)
198
+ rvs1 = rng.rvs(100)
199
+ rng.set_random_state(123)
200
+ rvs2 = rng.rvs(100)
201
+ assert_equal(rvs1, rvs2)
202
+
203
+
204
+ def test_threading_behaviour():
205
+ # Test if the API is thread-safe.
206
+ # This verifies if the lock mechanism and the use of `PyErr_Occurred`
207
+ # is correct.
208
+ errors = {"err1": None, "err2": None}
209
+
210
+ class Distribution:
211
+ def __init__(self, pdf_msg):
212
+ self.pdf_msg = pdf_msg
213
+
214
+ def pdf(self, x):
215
+ if 49.9 < x < 50.0:
216
+ raise ValueError(self.pdf_msg)
217
+ return x
218
+
219
+ def dpdf(self, x):
220
+ return 1
221
+
222
+ def func1():
223
+ dist = Distribution('foo')
224
+ rng = TransformedDensityRejection(dist, domain=(10, 100),
225
+ random_state=12)
226
+ try:
227
+ rng.rvs(100000)
228
+ except ValueError as e:
229
+ errors['err1'] = e.args[0]
230
+
231
+ def func2():
232
+ dist = Distribution('bar')
233
+ rng = TransformedDensityRejection(dist, domain=(10, 100),
234
+ random_state=2)
235
+ try:
236
+ rng.rvs(100000)
237
+ except ValueError as e:
238
+ errors['err2'] = e.args[0]
239
+
240
+ t1 = threading.Thread(target=func1)
241
+ t2 = threading.Thread(target=func2)
242
+
243
+ t1.start()
244
+ t2.start()
245
+
246
+ t1.join()
247
+ t2.join()
248
+
249
+ assert errors['err1'] == 'foo'
250
+ assert errors['err2'] == 'bar'
251
+
252
+
253
+ @pytest.mark.parametrize("method, kwargs", all_methods)
254
+ def test_pickle(method, kwargs):
255
+ Method = getattr(stats.sampling, method)
256
+ rng1 = Method(**kwargs, random_state=123)
257
+ obj = pickle.dumps(rng1)
258
+ rng2 = pickle.loads(obj)
259
+ assert_equal(rng1.rvs(100), rng2.rvs(100))
260
+
261
+
262
+ @pytest.mark.parametrize("size", [None, 0, (0, ), 1, (10, 3), (2, 3, 4, 5),
263
+ (0, 0), (0, 1)])
264
+ def test_rvs_size(size):
265
+ # As the `rvs` method is present in the base class and shared between
266
+ # all the classes, we can just test with one of the methods.
267
+ rng = TransformedDensityRejection(StandardNormal())
268
+ if size is None:
269
+ assert np.isscalar(rng.rvs(size))
270
+ else:
271
+ if np.isscalar(size):
272
+ size = (size, )
273
+ assert rng.rvs(size).shape == size
274
+
275
+
276
+ def test_with_scipy_distribution():
277
+ # test if the setup works with SciPy's rv_frozen distributions
278
+ dist = stats.norm()
279
+ urng = np.random.default_rng(0)
280
+ rng = NumericalInverseHermite(dist, random_state=urng)
281
+ u = np.linspace(0, 1, num=100)
282
+ check_cont_samples(rng, dist, dist.stats())
283
+ assert_allclose(dist.ppf(u), rng.ppf(u))
284
+ # test if it works with `loc` and `scale`
285
+ dist = stats.norm(loc=10., scale=5.)
286
+ rng = NumericalInverseHermite(dist, random_state=urng)
287
+ check_cont_samples(rng, dist, dist.stats())
288
+ assert_allclose(dist.ppf(u), rng.ppf(u))
289
+ # check for discrete distributions
290
+ dist = stats.binom(10, 0.2)
291
+ rng = DiscreteAliasUrn(dist, random_state=urng)
292
+ domain = dist.support()
293
+ pv = dist.pmf(np.arange(domain[0], domain[1]+1))
294
+ check_discr_samples(rng, pv, dist.stats())
295
+
296
+
297
+ def check_cont_samples(rng, dist, mv_ex, rtol=1e-7, atol=1e-1):
298
+ rvs = rng.rvs(100000)
299
+ mv = rvs.mean(), rvs.var()
300
+ # test the moments only if the variance is finite
301
+ if np.isfinite(mv_ex[1]):
302
+ assert_allclose(mv, mv_ex, rtol=rtol, atol=atol)
303
+ # Cramer Von Mises test for goodness-of-fit
304
+ rvs = rng.rvs(500)
305
+ dist.cdf = np.vectorize(dist.cdf)
306
+ pval = cramervonmises(rvs, dist.cdf).pvalue
307
+ assert pval > 0.1
308
+
309
+
310
+ def check_discr_samples(rng, pv, mv_ex, rtol=1e-3, atol=1e-1):
311
+ rvs = rng.rvs(100000)
312
+ # test if the first few moments match
313
+ mv = rvs.mean(), rvs.var()
314
+ assert_allclose(mv, mv_ex, rtol=rtol, atol=atol)
315
+ # normalize
316
+ pv = pv / pv.sum()
317
+ # chi-squared test for goodness-of-fit
318
+ obs_freqs = np.zeros_like(pv)
319
+ _, freqs = np.unique(rvs, return_counts=True)
320
+ freqs = freqs / freqs.sum()
321
+ obs_freqs[:freqs.size] = freqs
322
+ pval = chisquare(obs_freqs, pv).pvalue
323
+ assert pval > 0.1
324
+
325
+
326
+ def test_warning_center_not_in_domain():
327
+ # UNURAN will warn if the center provided or the one computed w/o the
328
+ # domain is outside of the domain
329
+ msg = "102 : center moved into domain of distribution"
330
+ with pytest.warns(RuntimeWarning, match=msg):
331
+ NumericalInversePolynomial(StandardNormal(), center=0, domain=(3, 5))
332
+ with pytest.warns(RuntimeWarning, match=msg):
333
+ NumericalInversePolynomial(StandardNormal(), domain=(3, 5))
334
+
335
+
336
+ @pytest.mark.parametrize('method', ["SimpleRatioUniforms",
337
+ "NumericalInversePolynomial",
338
+ "TransformedDensityRejection"])
339
+ def test_error_mode_not_in_domain(method):
340
+ # UNURAN raises an error if the mode is not in the domain
341
+ # the behavior is different compared to the case that center is not in the
342
+ # domain. mode is supposed to be the exact value, center can be an
343
+ # approximate value
344
+ Method = getattr(stats.sampling, method)
345
+ msg = "17 : mode not in domain"
346
+ with pytest.raises(UNURANError, match=msg):
347
+ Method(StandardNormal(), mode=0, domain=(3, 5))
348
+
349
+
350
+ @pytest.mark.parametrize('method', ["NumericalInverseHermite",
351
+ "NumericalInversePolynomial"])
352
+ class TestQRVS:
353
+ def test_input_validation(self, method):
354
+ match = "`qmc_engine` must be an instance of..."
355
+ with pytest.raises(ValueError, match=match):
356
+ Method = getattr(stats.sampling, method)
357
+ gen = Method(StandardNormal())
358
+ gen.qrvs(qmc_engine=0)
359
+
360
+ # issues with QMCEngines and old NumPy
361
+ Method = getattr(stats.sampling, method)
362
+ gen = Method(StandardNormal())
363
+
364
+ match = "`d` must be consistent with dimension of `qmc_engine`."
365
+ with pytest.raises(ValueError, match=match):
366
+ gen.qrvs(d=3, qmc_engine=stats.qmc.Halton(2))
367
+
368
+ qrngs = [None, stats.qmc.Sobol(1, seed=0), stats.qmc.Halton(3, seed=0)]
369
+ # `size=None` should not add anything to the shape, `size=1` should
370
+ sizes = [(None, tuple()), (1, (1,)), (4, (4,)),
371
+ ((4,), (4,)), ((2, 4), (2, 4))] # type: ignore
372
+ # Neither `d=None` nor `d=1` should add anything to the shape
373
+ ds = [(None, tuple()), (1, tuple()), (3, (3,))]
374
+
375
+ @pytest.mark.parametrize('qrng', qrngs)
376
+ @pytest.mark.parametrize('size_in, size_out', sizes)
377
+ @pytest.mark.parametrize('d_in, d_out', ds)
378
+ @pytest.mark.thread_unsafe
379
+ def test_QRVS_shape_consistency(self, qrng, size_in, size_out,
380
+ d_in, d_out, method):
381
+ w32 = sys.platform == "win32" and platform.architecture()[0] == "32bit"
382
+ if w32 and method == "NumericalInversePolynomial":
383
+ pytest.xfail("NumericalInversePolynomial.qrvs fails for Win "
384
+ "32-bit")
385
+
386
+ dist = StandardNormal()
387
+ Method = getattr(stats.sampling, method)
388
+ gen = Method(dist)
389
+
390
+ # If d and qrng.d are inconsistent, an error is raised
391
+ if d_in is not None and qrng is not None and qrng.d != d_in:
392
+ match = "`d` must be consistent with dimension of `qmc_engine`."
393
+ with pytest.raises(ValueError, match=match):
394
+ gen.qrvs(size_in, d=d_in, qmc_engine=qrng)
395
+ return
396
+
397
+ # Sometimes d is really determined by qrng
398
+ if d_in is None and qrng is not None and qrng.d != 1:
399
+ d_out = (qrng.d,)
400
+
401
+ shape_expected = size_out + d_out
402
+
403
+ qrng2 = deepcopy(qrng)
404
+ qrvs = gen.qrvs(size=size_in, d=d_in, qmc_engine=qrng)
405
+ if size_in is not None:
406
+ assert qrvs.shape == shape_expected
407
+
408
+ if qrng2 is not None:
409
+ uniform = qrng2.random(np.prod(size_in) or 1)
410
+ qrvs2 = stats.norm.ppf(uniform).reshape(shape_expected)
411
+ assert_allclose(qrvs, qrvs2, atol=1e-12)
412
+
413
+ def test_QRVS_size_tuple(self, method):
414
+ # QMCEngine samples are always of shape (n, d). When `size` is a tuple,
415
+ # we set `n = prod(size)` in the call to qmc_engine.random, transform
416
+ # the sample, and reshape it to the final dimensions. When we reshape,
417
+ # we need to be careful, because the _columns_ of the sample returned
418
+ # by a QMCEngine are "independent"-ish, but the elements within the
419
+ # columns are not. We need to make sure that this doesn't get mixed up
420
+ # by reshaping: qrvs[..., i] should remain "independent"-ish of
421
+ # qrvs[..., i+1], but the elements within qrvs[..., i] should be
422
+ # transformed from the same low-discrepancy sequence.
423
+
424
+ dist = StandardNormal()
425
+ Method = getattr(stats.sampling, method)
426
+ gen = Method(dist)
427
+
428
+ size = (3, 4)
429
+ d = 5
430
+ qrng = stats.qmc.Halton(d, seed=0)
431
+ qrng2 = stats.qmc.Halton(d, seed=0)
432
+
433
+ uniform = qrng2.random(np.prod(size))
434
+
435
+ qrvs = gen.qrvs(size=size, d=d, qmc_engine=qrng)
436
+ qrvs2 = stats.norm.ppf(uniform)
437
+
438
+ for i in range(d):
439
+ sample = qrvs[..., i]
440
+ sample2 = qrvs2[:, i].reshape(size)
441
+ assert_allclose(sample, sample2, atol=1e-12)
442
+
443
+
444
+ class TestTransformedDensityRejection:
445
+ # Simple Custom Distribution
446
+ class dist0:
447
+ def pdf(self, x):
448
+ return 3/4 * (1-x*x)
449
+
450
+ def dpdf(self, x):
451
+ return 3/4 * (-2*x)
452
+
453
+ def cdf(self, x):
454
+ return 3/4 * (x - x**3/3 + 2/3)
455
+
456
+ def support(self):
457
+ return -1, 1
458
+
459
+ # Standard Normal Distribution
460
+ class dist1:
461
+ def pdf(self, x):
462
+ return stats.norm._pdf(x / 0.1)
463
+
464
+ def dpdf(self, x):
465
+ return -x / 0.01 * stats.norm._pdf(x / 0.1)
466
+
467
+ def cdf(self, x):
468
+ return stats.norm._cdf(x / 0.1)
469
+
470
+ # pdf with piecewise linear function as transformed density
471
+ # with T = -1/sqrt with shift. Taken from UNU.RAN test suite
472
+ # (from file t_tdr_ps.c)
473
+ class dist2:
474
+ def __init__(self, shift):
475
+ self.shift = shift
476
+
477
+ def pdf(self, x):
478
+ x -= self.shift
479
+ y = 1. / (abs(x) + 1.)
480
+ return 0.5 * y * y
481
+
482
+ def dpdf(self, x):
483
+ x -= self.shift
484
+ y = 1. / (abs(x) + 1.)
485
+ y = y * y * y
486
+ return y if (x < 0.) else -y
487
+
488
+ def cdf(self, x):
489
+ x -= self.shift
490
+ if x <= 0.:
491
+ return 0.5 / (1. - x)
492
+ else:
493
+ return 1. - 0.5 / (1. + x)
494
+
495
+ dists = [dist0(), dist1(), dist2(0.), dist2(10000.)]
496
+
497
+ # exact mean and variance of the distributions in the list dists
498
+ mv0 = [0., 4./15.]
499
+ mv1 = [0., 0.01]
500
+ mv2 = [0., np.inf]
501
+ mv3 = [10000., np.inf]
502
+ mvs = [mv0, mv1, mv2, mv3]
503
+
504
+ @pytest.mark.parametrize("dist, mv_ex",
505
+ zip(dists, mvs))
506
+ @pytest.mark.thread_unsafe
507
+ def test_basic(self, dist, mv_ex):
508
+ with suppress_warnings() as sup:
509
+ # filter the warnings thrown by UNU.RAN
510
+ sup.filter(RuntimeWarning)
511
+ rng = TransformedDensityRejection(dist, random_state=42)
512
+ check_cont_samples(rng, dist, mv_ex)
513
+
514
+ # PDF 0 everywhere => bad construction points
515
+ bad_pdfs = [(lambda x: 0, UNURANError, r"50 : bad construction points.")]
516
+ bad_pdfs += bad_pdfs_common # type: ignore[arg-type]
517
+
518
+ @pytest.mark.parametrize("pdf, err, msg", bad_pdfs)
519
+ def test_bad_pdf(self, pdf, err, msg):
520
+ class dist:
521
+ pass
522
+ dist.pdf = pdf
523
+ dist.dpdf = lambda x: 1 # an arbitrary dPDF
524
+ with pytest.raises(err, match=msg):
525
+ TransformedDensityRejection(dist)
526
+
527
+ @pytest.mark.parametrize("dpdf, err, msg", bad_dpdf_common)
528
+ def test_bad_dpdf(self, dpdf, err, msg):
529
+ class dist:
530
+ pass
531
+ dist.pdf = lambda x: x
532
+ dist.dpdf = dpdf
533
+ with pytest.raises(err, match=msg):
534
+ TransformedDensityRejection(dist, domain=(1, 10))
535
+
536
+ # test domains with inf + nan in them. need to write a custom test for
537
+ # this because not all methods support infinite tails.
538
+ @pytest.mark.parametrize("domain, err, msg", inf_nan_domains)
539
+ def test_inf_nan_domains(self, domain, err, msg):
540
+ with pytest.raises(err, match=msg):
541
+ TransformedDensityRejection(StandardNormal(), domain=domain)
542
+
543
+ @pytest.mark.parametrize("construction_points", [-1, 0, 0.1])
544
+ def test_bad_construction_points_scalar(self, construction_points):
545
+ with pytest.raises(ValueError, match=r"`construction_points` must be "
546
+ r"a positive integer."):
547
+ TransformedDensityRejection(
548
+ StandardNormal(), construction_points=construction_points
549
+ )
550
+
551
+ def test_bad_construction_points_array(self):
552
+ # empty array
553
+ construction_points = []
554
+ with pytest.raises(ValueError, match=r"`construction_points` must "
555
+ r"either be a "
556
+ r"scalar or a non-empty array."):
557
+ TransformedDensityRejection(
558
+ StandardNormal(), construction_points=construction_points
559
+ )
560
+
561
+ # construction_points not monotonically increasing
562
+ construction_points = [1, 1, 1, 1, 1, 1]
563
+ with pytest.warns(RuntimeWarning, match=r"33 : starting points not "
564
+ r"strictly monotonically "
565
+ r"increasing"):
566
+ TransformedDensityRejection(
567
+ StandardNormal(), construction_points=construction_points
568
+ )
569
+
570
+ # construction_points containing nans
571
+ construction_points = [np.nan, np.nan, np.nan]
572
+ with pytest.raises(UNURANError, match=r"50 : bad construction "
573
+ r"points."):
574
+ TransformedDensityRejection(
575
+ StandardNormal(), construction_points=construction_points
576
+ )
577
+
578
+ # construction_points out of domain
579
+ construction_points = [-10, 10]
580
+ with pytest.warns(RuntimeWarning, match=r"50 : starting point out of "
581
+ r"domain"):
582
+ TransformedDensityRejection(
583
+ StandardNormal(), domain=(-3, 3),
584
+ construction_points=construction_points
585
+ )
586
+
587
+ @pytest.mark.parametrize("c", [-1., np.nan, np.inf, 0.1, 1.])
588
+ def test_bad_c(self, c):
589
+ msg = r"`c` must either be -0.5 or 0."
590
+ with pytest.raises(ValueError, match=msg):
591
+ TransformedDensityRejection(StandardNormal(), c=-1.)
592
+
593
+ u = [np.linspace(0, 1, num=1000), [], [[]], [np.nan],
594
+ [-np.inf, np.nan, np.inf], 0,
595
+ [[np.nan, 0.5, 0.1], [0.2, 0.4, np.inf], [-2, 3, 4]]]
596
+
597
+ @pytest.mark.parametrize("u", u)
598
+ def test_ppf_hat(self, u):
599
+ # Increase the `max_squeeze_hat_ratio` so the ppf_hat is more
600
+ # accurate.
601
+ rng = TransformedDensityRejection(StandardNormal(),
602
+ max_squeeze_hat_ratio=0.9999)
603
+ # Older versions of NumPy throw RuntimeWarnings for comparisons
604
+ # with nan.
605
+ with suppress_warnings() as sup:
606
+ sup.filter(RuntimeWarning, "invalid value encountered in greater")
607
+ sup.filter(RuntimeWarning, "invalid value encountered in "
608
+ "greater_equal")
609
+ sup.filter(RuntimeWarning, "invalid value encountered in less")
610
+ sup.filter(RuntimeWarning, "invalid value encountered in "
611
+ "less_equal")
612
+ res = rng.ppf_hat(u)
613
+ expected = stats.norm.ppf(u)
614
+ assert_allclose(res, expected, rtol=1e-3, atol=1e-5)
615
+ assert res.shape == expected.shape
616
+
617
+ def test_bad_dist(self):
618
+ # Empty distribution
619
+ class dist:
620
+ ...
621
+
622
+ msg = r"`pdf` required but not found."
623
+ with pytest.raises(ValueError, match=msg):
624
+ TransformedDensityRejection(dist)
625
+
626
+ # dPDF not present in dist
627
+ class dist:
628
+ pdf = lambda x: 1-x*x # noqa: E731
629
+
630
+ msg = r"`dpdf` required but not found."
631
+ with pytest.raises(ValueError, match=msg):
632
+ TransformedDensityRejection(dist)
633
+
634
+
635
+ class TestDiscreteAliasUrn:
636
+ # DAU fails on these probably because of large domains and small
637
+ # computation errors in PMF. Mean/SD match but chi-squared test fails.
638
+ basic_fail_dists = {
639
+ 'nchypergeom_fisher', # numerical errors on tails
640
+ 'nchypergeom_wallenius', # numerical errors on tails
641
+ 'randint' # fails on 32-bit ubuntu
642
+ }
643
+
644
+ @pytest.mark.parametrize("distname, params", distdiscrete)
645
+ def test_basic(self, distname, params):
646
+ if distname in self.basic_fail_dists:
647
+ msg = ("DAU fails on these probably because of large domains "
648
+ "and small computation errors in PMF.")
649
+ pytest.skip(msg)
650
+ if not isinstance(distname, str):
651
+ dist = distname
652
+ else:
653
+ dist = getattr(stats, distname)
654
+ dist = dist(*params)
655
+ domain = dist.support()
656
+ if not np.isfinite(domain[1] - domain[0]):
657
+ # DAU only works with finite domain. So, skip the distributions
658
+ # with infinite tails.
659
+ pytest.skip("DAU only works with a finite domain.")
660
+ k = np.arange(domain[0], domain[1]+1)
661
+ pv = dist.pmf(k)
662
+ mv_ex = dist.stats('mv')
663
+ rng = DiscreteAliasUrn(dist, random_state=42)
664
+ check_discr_samples(rng, pv, mv_ex)
665
+
666
+ # Can't use bad_pmf_common here as we evaluate PMF early on to avoid
667
+ # unhelpful errors from UNU.RAN.
668
+ bad_pmf = [
669
+ # inf returned
670
+ (lambda x: np.inf, ValueError,
671
+ r"must contain only finite / non-nan values"),
672
+ # nan returned
673
+ (lambda x: np.nan, ValueError,
674
+ r"must contain only finite / non-nan values"),
675
+ # all zeros
676
+ (lambda x: 0.0, ValueError,
677
+ r"must contain at least one non-zero value"),
678
+ # Undefined name inside the function
679
+ (lambda x: foo, NameError, # type: ignore[name-defined] # noqa: F821
680
+ r"name 'foo' is not defined"),
681
+ # Returning wrong type.
682
+ (lambda x: [], ValueError,
683
+ r"setting an array element with a sequence."),
684
+ # probabilities < 0
685
+ (lambda x: -x, UNURANError,
686
+ r"50 : probability < 0"),
687
+ # signature of PMF wrong
688
+ (lambda: 1.0, TypeError,
689
+ r"takes 0 positional arguments but 1 was given")
690
+ ]
691
+
692
+ @pytest.mark.parametrize("pmf, err, msg", bad_pmf)
693
+ def test_bad_pmf(self, pmf, err, msg):
694
+ class dist:
695
+ pass
696
+ dist.pmf = pmf
697
+ with pytest.raises(err, match=msg):
698
+ DiscreteAliasUrn(dist, domain=(1, 10))
699
+
700
+ @pytest.mark.parametrize("pv", [[0.18, 0.02, 0.8],
701
+ [1.0, 2.0, 3.0, 4.0, 5.0, 6.0]])
702
+ def test_sampling_with_pv(self, pv):
703
+ pv = np.asarray(pv, dtype=np.float64)
704
+ rng = DiscreteAliasUrn(pv, random_state=123)
705
+ rng.rvs(100_000)
706
+ pv = pv / pv.sum()
707
+ variates = np.arange(0, len(pv))
708
+ # test if the first few moments match
709
+ m_expected = np.average(variates, weights=pv)
710
+ v_expected = np.average((variates - m_expected) ** 2, weights=pv)
711
+ mv_expected = m_expected, v_expected
712
+ check_discr_samples(rng, pv, mv_expected)
713
+
714
+ @pytest.mark.parametrize("pv, msg", bad_pv_common)
715
+ def test_bad_pv(self, pv, msg):
716
+ with pytest.raises(ValueError, match=msg):
717
+ DiscreteAliasUrn(pv)
718
+
719
+ # DAU doesn't support infinite tails. So, it should throw an error when
720
+ # inf is present in the domain.
721
+ inf_domain = [(-np.inf, np.inf), (np.inf, np.inf), (-np.inf, -np.inf),
722
+ (0, np.inf), (-np.inf, 0)]
723
+
724
+ @pytest.mark.parametrize("domain", inf_domain)
725
+ def test_inf_domain(self, domain):
726
+ with pytest.raises(ValueError, match=r"must be finite"):
727
+ DiscreteAliasUrn(stats.binom(10, 0.2), domain=domain)
728
+
729
+ def test_bad_urn_factor(self):
730
+ with pytest.warns(RuntimeWarning, match=r"relative urn size < 1."):
731
+ DiscreteAliasUrn([0.5, 0.5], urn_factor=-1)
732
+
733
+ def test_bad_args(self):
734
+ msg = (r"`domain` must be provided when the "
735
+ r"probability vector is not available.")
736
+
737
+ class dist:
738
+ def pmf(self, x):
739
+ return x
740
+
741
+ with pytest.raises(ValueError, match=msg):
742
+ DiscreteAliasUrn(dist)
743
+
744
+ def test_gh19359(self):
745
+ pv = special.softmax(np.ones((1533,)))
746
+ rng = DiscreteAliasUrn(pv, random_state=42)
747
+ # check the correctness
748
+ check_discr_samples(rng, pv, (1532 / 2, (1532**2 - 1) / 12),
749
+ rtol=5e-3)
750
+
751
+
752
+ class TestNumericalInversePolynomial:
753
+ # Simple Custom Distribution
754
+ class dist0:
755
+ def pdf(self, x):
756
+ return 3/4 * (1-x*x)
757
+
758
+ def cdf(self, x):
759
+ return 3/4 * (x - x**3/3 + 2/3)
760
+
761
+ def support(self):
762
+ return -1, 1
763
+
764
+ # Standard Normal Distribution
765
+ class dist1:
766
+ def pdf(self, x):
767
+ return stats.norm._pdf(x / 0.1)
768
+
769
+ def cdf(self, x):
770
+ return stats.norm._cdf(x / 0.1)
771
+
772
+ # Sin 2 distribution
773
+ # / 0.05 + 0.45*(1 +sin(2 Pi x)) if |x| <= 1
774
+ # f(x) = <
775
+ # \ 0 otherwise
776
+ # Taken from UNU.RAN test suite (from file t_pinv.c)
777
+ class dist2:
778
+ def pdf(self, x):
779
+ return 0.05 + 0.45 * (1 + np.sin(2*np.pi*x))
780
+
781
+ def cdf(self, x):
782
+ return (0.05*(x + 1) +
783
+ 0.9*(1. + 2.*np.pi*(1 + x) - np.cos(2.*np.pi*x)) /
784
+ (4.*np.pi))
785
+
786
+ def support(self):
787
+ return -1, 1
788
+
789
+ # Sin 10 distribution
790
+ # / 0.05 + 0.45*(1 +sin(2 Pi x)) if |x| <= 5
791
+ # f(x) = <
792
+ # \ 0 otherwise
793
+ # Taken from UNU.RAN test suite (from file t_pinv.c)
794
+ class dist3:
795
+ def pdf(self, x):
796
+ return 0.2 * (0.05 + 0.45 * (1 + np.sin(2*np.pi*x)))
797
+
798
+ def cdf(self, x):
799
+ return x/10. + 0.5 + 0.09/(2*np.pi) * (np.cos(10*np.pi) -
800
+ np.cos(2*np.pi*x))
801
+
802
+ def support(self):
803
+ return -5, 5
804
+
805
+ dists = [dist0(), dist1(), dist2(), dist3()]
806
+
807
+ # exact mean and variance of the distributions in the list dists
808
+ mv0 = [0., 4./15.]
809
+ mv1 = [0., 0.01]
810
+ mv2 = [-0.45/np.pi, 2/3*0.5 - 0.45**2/np.pi**2]
811
+ mv3 = [-0.45/np.pi, 0.2 * 250/3 * 0.5 - 0.45**2/np.pi**2]
812
+ mvs = [mv0, mv1, mv2, mv3]
813
+
814
+ @pytest.mark.parametrize("dist, mv_ex",
815
+ zip(dists, mvs))
816
+ def test_basic(self, dist, mv_ex):
817
+ rng = NumericalInversePolynomial(dist, random_state=42)
818
+ check_cont_samples(rng, dist, mv_ex)
819
+
820
+ @pytest.mark.xslow
821
+ @pytest.mark.parametrize("distname, params", distcont)
822
+ def test_basic_all_scipy_dists(self, distname, params):
823
+
824
+ very_slow_dists = ['anglit', 'gausshyper', 'kappa4',
825
+ 'ksone', 'kstwo', 'levy_l',
826
+ 'levy_stable', 'studentized_range',
827
+ 'trapezoid', 'triang', 'vonmises']
828
+ # for these distributions, some assertions fail due to minor
829
+ # numerical differences. They can be avoided either by changing
830
+ # the seed or by increasing the u_resolution.
831
+ fail_dists = ['chi2', 'fatiguelife', 'gibrat',
832
+ 'halfgennorm', 'lognorm', 'ncf',
833
+ 'ncx2', 'pareto', 't']
834
+ # for these distributions, skip the check for agreement between sample
835
+ # moments and true moments. We cannot expect them to pass due to the
836
+ # high variance of sample moments.
837
+ skip_sample_moment_check = ['rel_breitwigner']
838
+
839
+ if distname in very_slow_dists:
840
+ pytest.skip(f"PINV too slow for {distname}")
841
+ if distname in fail_dists:
842
+ pytest.skip(f"PINV fails for {distname}")
843
+ dist = (getattr(stats, distname)
844
+ if isinstance(distname, str)
845
+ else distname)
846
+ dist = dist(*params)
847
+ with suppress_warnings() as sup:
848
+ sup.filter(RuntimeWarning)
849
+ rng = NumericalInversePolynomial(dist, random_state=42)
850
+ if distname in skip_sample_moment_check:
851
+ return
852
+ check_cont_samples(rng, dist, [dist.mean(), dist.var()])
853
+
854
+ @pytest.mark.parametrize("pdf, err, msg", bad_pdfs_common)
855
+ def test_bad_pdf(self, pdf, err, msg):
856
+ class dist:
857
+ pass
858
+ dist.pdf = pdf
859
+ with pytest.raises(err, match=msg):
860
+ NumericalInversePolynomial(dist, domain=[0, 5])
861
+
862
+ @pytest.mark.parametrize("logpdf, err, msg", bad_logpdfs_common)
863
+ def test_bad_logpdf(self, logpdf, err, msg):
864
+ class dist:
865
+ pass
866
+ dist.logpdf = logpdf
867
+ with pytest.raises(err, match=msg):
868
+ NumericalInversePolynomial(dist, domain=[0, 5])
869
+
870
+ # test domains with inf + nan in them. need to write a custom test for
871
+ # this because not all methods support infinite tails.
872
+ @pytest.mark.parametrize("domain, err, msg", inf_nan_domains)
873
+ def test_inf_nan_domains(self, domain, err, msg):
874
+ with pytest.raises(err, match=msg):
875
+ NumericalInversePolynomial(StandardNormal(), domain=domain)
876
+
877
+ u = [
878
+ # test if quantile 0 and 1 return -inf and inf respectively and check
879
+ # the correctness of the PPF for equidistant points between 0 and 1.
880
+ np.linspace(0, 1, num=10000),
881
+ # test the PPF method for empty arrays
882
+ [], [[]],
883
+ # test if nans and infs return nan result.
884
+ [np.nan], [-np.inf, np.nan, np.inf],
885
+ # test if a scalar is returned for a scalar input.
886
+ 0,
887
+ # test for arrays with nans, values greater than 1 and less than 0,
888
+ # and some valid values.
889
+ [[np.nan, 0.5, 0.1], [0.2, 0.4, np.inf], [-2, 3, 4]]
890
+ ]
891
+
892
+ @pytest.mark.parametrize("u", u)
893
+ def test_ppf(self, u):
894
+ dist = StandardNormal()
895
+ rng = NumericalInversePolynomial(dist, u_resolution=1e-14)
896
+ # Older versions of NumPy throw RuntimeWarnings for comparisons
897
+ # with nan.
898
+ with suppress_warnings() as sup:
899
+ sup.filter(RuntimeWarning, "invalid value encountered in greater")
900
+ sup.filter(RuntimeWarning, "invalid value encountered in "
901
+ "greater_equal")
902
+ sup.filter(RuntimeWarning, "invalid value encountered in less")
903
+ sup.filter(RuntimeWarning, "invalid value encountered in "
904
+ "less_equal")
905
+ res = rng.ppf(u)
906
+ expected = stats.norm.ppf(u)
907
+ assert_allclose(res, expected, rtol=1e-11, atol=1e-11)
908
+ assert res.shape == expected.shape
909
+
910
+ x = [np.linspace(-10, 10, num=10000), [], [[]], [np.nan],
911
+ [-np.inf, np.nan, np.inf], 0,
912
+ [[np.nan, 0.5, 0.1], [0.2, 0.4, np.inf], [-np.inf, 3, 4]]]
913
+
914
+ @pytest.mark.parametrize("x", x)
915
+ def test_cdf(self, x):
916
+ dist = StandardNormal()
917
+ rng = NumericalInversePolynomial(dist, u_resolution=1e-14)
918
+ # Older versions of NumPy throw RuntimeWarnings for comparisons
919
+ # with nan.
920
+ with suppress_warnings() as sup:
921
+ sup.filter(RuntimeWarning, "invalid value encountered in greater")
922
+ sup.filter(RuntimeWarning, "invalid value encountered in "
923
+ "greater_equal")
924
+ sup.filter(RuntimeWarning, "invalid value encountered in less")
925
+ sup.filter(RuntimeWarning, "invalid value encountered in "
926
+ "less_equal")
927
+ res = rng.cdf(x)
928
+ expected = stats.norm.cdf(x)
929
+ assert_allclose(res, expected, rtol=1e-11, atol=1e-11)
930
+ assert res.shape == expected.shape
931
+
932
+ @pytest.mark.slow
933
+ def test_u_error(self):
934
+ dist = StandardNormal()
935
+ rng = NumericalInversePolynomial(dist, u_resolution=1e-10)
936
+ max_error, mae = rng.u_error()
937
+ assert max_error < 1e-10
938
+ assert mae <= max_error
939
+ rng = NumericalInversePolynomial(dist, u_resolution=1e-14)
940
+ max_error, mae = rng.u_error()
941
+ assert max_error < 1e-14
942
+ assert mae <= max_error
943
+
944
+ bad_orders = [1, 4.5, 20, np.inf, np.nan]
945
+ bad_u_resolution = [1e-20, 1e-1, np.inf, np.nan]
946
+
947
+ @pytest.mark.parametrize("order", bad_orders)
948
+ def test_bad_orders(self, order):
949
+ dist = StandardNormal()
950
+
951
+ msg = r"`order` must be an integer in the range \[3, 17\]."
952
+ with pytest.raises(ValueError, match=msg):
953
+ NumericalInversePolynomial(dist, order=order)
954
+
955
+ @pytest.mark.parametrize("u_resolution", bad_u_resolution)
956
+ def test_bad_u_resolution(self, u_resolution):
957
+ msg = r"`u_resolution` must be between 1e-15 and 1e-5."
958
+ with pytest.raises(ValueError, match=msg):
959
+ NumericalInversePolynomial(StandardNormal(),
960
+ u_resolution=u_resolution)
961
+
962
+ def test_bad_args(self):
963
+
964
+ class BadDist:
965
+ def cdf(self, x):
966
+ return stats.norm._cdf(x)
967
+
968
+ dist = BadDist()
969
+ msg = r"Either of the methods `pdf` or `logpdf` must be specified"
970
+ with pytest.raises(ValueError, match=msg):
971
+ rng = NumericalInversePolynomial(dist)
972
+
973
+ dist = StandardNormal()
974
+ rng = NumericalInversePolynomial(dist)
975
+ msg = r"`sample_size` must be greater than or equal to 1000."
976
+ with pytest.raises(ValueError, match=msg):
977
+ rng.u_error(10)
978
+
979
+ class Distribution:
980
+ def pdf(self, x):
981
+ return np.exp(-0.5 * x*x)
982
+
983
+ dist = Distribution()
984
+ rng = NumericalInversePolynomial(dist)
985
+ msg = r"Exact CDF required but not found."
986
+ with pytest.raises(ValueError, match=msg):
987
+ rng.u_error()
988
+
989
+ def test_logpdf_pdf_consistency(self):
990
+ # 1. check that PINV works with pdf and logpdf only
991
+ # 2. check that generated ppf is the same (up to a small tolerance)
992
+
993
+ class MyDist:
994
+ pass
995
+
996
+ # create generator from dist with only pdf
997
+ dist_pdf = MyDist()
998
+ dist_pdf.pdf = lambda x: math.exp(-x*x/2)
999
+ rng1 = NumericalInversePolynomial(dist_pdf)
1000
+
1001
+ # create dist with only logpdf
1002
+ dist_logpdf = MyDist()
1003
+ dist_logpdf.logpdf = lambda x: -x*x/2
1004
+ rng2 = NumericalInversePolynomial(dist_logpdf)
1005
+
1006
+ q = np.linspace(1e-5, 1-1e-5, num=100)
1007
+ assert_allclose(rng1.ppf(q), rng2.ppf(q))
1008
+
1009
+
1010
+ class TestNumericalInverseHermite:
1011
+ # / (1 +sin(2 Pi x))/2 if |x| <= 1
1012
+ # f(x) = <
1013
+ # \ 0 otherwise
1014
+ # Taken from UNU.RAN test suite (from file t_hinv.c)
1015
+ class dist0:
1016
+ def pdf(self, x):
1017
+ return 0.5*(1. + np.sin(2.*np.pi*x))
1018
+
1019
+ def dpdf(self, x):
1020
+ return np.pi*np.cos(2.*np.pi*x)
1021
+
1022
+ def cdf(self, x):
1023
+ return (1. + 2.*np.pi*(1 + x) - np.cos(2.*np.pi*x)) / (4.*np.pi)
1024
+
1025
+ def support(self):
1026
+ return -1, 1
1027
+
1028
+ # / Max(sin(2 Pi x)),0)Pi/2 if -1 < x <0.5
1029
+ # f(x) = <
1030
+ # \ 0 otherwise
1031
+ # Taken from UNU.RAN test suite (from file t_hinv.c)
1032
+ class dist1:
1033
+ def pdf(self, x):
1034
+ if (x <= -0.5):
1035
+ return np.sin((2. * np.pi) * x) * 0.5 * np.pi
1036
+ if (x < 0.):
1037
+ return 0.
1038
+ if (x <= 0.5):
1039
+ return np.sin((2. * np.pi) * x) * 0.5 * np.pi
1040
+
1041
+ def dpdf(self, x):
1042
+ if (x <= -0.5):
1043
+ return np.cos((2. * np.pi) * x) * np.pi * np.pi
1044
+ if (x < 0.):
1045
+ return 0.
1046
+ if (x <= 0.5):
1047
+ return np.cos((2. * np.pi) * x) * np.pi * np.pi
1048
+
1049
+ def cdf(self, x):
1050
+ if (x <= -0.5):
1051
+ return 0.25 * (1 - np.cos((2. * np.pi) * x))
1052
+ if (x < 0.):
1053
+ return 0.5
1054
+ if (x <= 0.5):
1055
+ return 0.75 - 0.25 * np.cos((2. * np.pi) * x)
1056
+
1057
+ def support(self):
1058
+ return -1, 0.5
1059
+
1060
+ dists = [dist0(), dist1()]
1061
+
1062
+ # exact mean and variance of the distributions in the list dists
1063
+ mv0 = [-1/(2*np.pi), 1/3 - 1/(4*np.pi*np.pi)]
1064
+ mv1 = [-1/4, 3/8-1/(2*np.pi*np.pi) - 1/16]
1065
+ mvs = [mv0, mv1]
1066
+
1067
+ @pytest.mark.parametrize("dist, mv_ex",
1068
+ zip(dists, mvs))
1069
+ @pytest.mark.parametrize("order", [3, 5])
1070
+ @pytest.mark.thread_unsafe
1071
+ def test_basic(self, dist, mv_ex, order):
1072
+ rng = NumericalInverseHermite(dist, order=order, random_state=42)
1073
+ check_cont_samples(rng, dist, mv_ex)
1074
+
1075
+ # test domains with inf + nan in them. need to write a custom test for
1076
+ # this because not all methods support infinite tails.
1077
+ @pytest.mark.parametrize("domain, err, msg", inf_nan_domains)
1078
+ def test_inf_nan_domains(self, domain, err, msg):
1079
+ with pytest.raises(err, match=msg):
1080
+ NumericalInverseHermite(StandardNormal(), domain=domain)
1081
+
1082
+ def basic_test_all_scipy_dists(self, distname, shapes):
1083
+ slow_dists = {'ksone', 'kstwo', 'levy_stable', 'skewnorm'}
1084
+ fail_dists = {'beta', 'gausshyper', 'geninvgauss', 'ncf', 'nct',
1085
+ 'norminvgauss', 'genhyperbolic', 'studentized_range',
1086
+ 'vonmises', 'kappa4', 'invgauss', 'wald'}
1087
+
1088
+ if distname in slow_dists:
1089
+ pytest.skip("Distribution is too slow")
1090
+ if distname in fail_dists:
1091
+ # specific reasons documented in gh-13319
1092
+ # https://github.com/scipy/scipy/pull/13319#discussion_r626188955
1093
+ pytest.xfail("Fails - usually due to inaccurate CDF/PDF")
1094
+
1095
+ np.random.seed(0)
1096
+
1097
+ dist = getattr(stats, distname)(*shapes)
1098
+ fni = NumericalInverseHermite(dist)
1099
+
1100
+ x = np.random.rand(10)
1101
+ p_tol = np.max(np.abs(dist.ppf(x)-fni.ppf(x))/np.abs(dist.ppf(x)))
1102
+ u_tol = np.max(np.abs(dist.cdf(fni.ppf(x)) - x))
1103
+
1104
+ assert p_tol < 1e-8
1105
+ assert u_tol < 1e-12
1106
+
1107
+ @pytest.mark.filterwarnings('ignore::RuntimeWarning')
1108
+ @pytest.mark.xslow
1109
+ @pytest.mark.parametrize(("distname", "shapes"), distcont)
1110
+ def test_basic_all_scipy_dists(self, distname, shapes):
1111
+ # if distname == "truncnorm":
1112
+ # pytest.skip("Tested separately")
1113
+ self.basic_test_all_scipy_dists(distname, shapes)
1114
+
1115
+ @pytest.mark.fail_slow(5)
1116
+ @pytest.mark.filterwarnings('ignore::RuntimeWarning')
1117
+ def test_basic_truncnorm_gh17155(self):
1118
+ self.basic_test_all_scipy_dists("truncnorm", (0.1, 2))
1119
+
1120
+ def test_input_validation(self):
1121
+ match = r"`order` must be either 1, 3, or 5."
1122
+ with pytest.raises(ValueError, match=match):
1123
+ NumericalInverseHermite(StandardNormal(), order=2)
1124
+
1125
+ match = "`cdf` required but not found"
1126
+ with pytest.raises(ValueError, match=match):
1127
+ NumericalInverseHermite("norm")
1128
+
1129
+ match = "could not convert string to float"
1130
+ with pytest.raises(ValueError, match=match):
1131
+ NumericalInverseHermite(StandardNormal(),
1132
+ u_resolution='ekki')
1133
+
1134
+ rngs = [None, 0, np.random.RandomState(0)]
1135
+ rngs.append(np.random.default_rng(0)) # type: ignore
1136
+ sizes = [(None, tuple()), (8, (8,)), ((4, 5, 6), (4, 5, 6))]
1137
+
1138
+ @pytest.mark.parametrize('rng', rngs)
1139
+ @pytest.mark.parametrize('size_in, size_out', sizes)
1140
+ @pytest.mark.thread_unsafe
1141
+ def test_RVS(self, rng, size_in, size_out):
1142
+ dist = StandardNormal()
1143
+ fni = NumericalInverseHermite(dist)
1144
+
1145
+ rng2 = deepcopy(rng)
1146
+ rvs = fni.rvs(size=size_in, random_state=rng)
1147
+ if size_in is not None:
1148
+ assert rvs.shape == size_out
1149
+
1150
+ if rng2 is not None:
1151
+ rng2 = check_random_state(rng2)
1152
+ uniform = rng2.uniform(size=size_in)
1153
+ rvs2 = stats.norm.ppf(uniform)
1154
+ assert_allclose(rvs, rvs2)
1155
+
1156
+ def test_inaccurate_CDF(self):
1157
+ # CDF function with inaccurate tail cannot be inverted; see gh-13319
1158
+ # https://github.com/scipy/scipy/pull/13319#discussion_r626188955
1159
+ shapes = (2.3098496451481823, 0.6268795430096368)
1160
+ match = ("98 : one or more intervals very short; possibly due to "
1161
+ "numerical problems with a pole or very flat tail")
1162
+
1163
+ # fails with default tol
1164
+ with pytest.warns(RuntimeWarning, match=match):
1165
+ NumericalInverseHermite(stats.beta(*shapes))
1166
+
1167
+ # no error with coarser tol
1168
+ NumericalInverseHermite(stats.beta(*shapes), u_resolution=1e-8)
1169
+
1170
+ def test_custom_distribution(self):
1171
+ dist1 = StandardNormal()
1172
+ fni1 = NumericalInverseHermite(dist1)
1173
+
1174
+ dist2 = stats.norm()
1175
+ fni2 = NumericalInverseHermite(dist2)
1176
+
1177
+ assert_allclose(fni1.rvs(random_state=0), fni2.rvs(random_state=0))
1178
+
1179
+ u = [
1180
+ # check the correctness of the PPF for equidistant points between
1181
+ # 0.02 and 0.98.
1182
+ np.linspace(0., 1., num=10000),
1183
+ # test the PPF method for empty arrays
1184
+ [], [[]],
1185
+ # test if nans and infs return nan result.
1186
+ [np.nan], [-np.inf, np.nan, np.inf],
1187
+ # test if a scalar is returned for a scalar input.
1188
+ 0,
1189
+ # test for arrays with nans, values greater than 1 and less than 0,
1190
+ # and some valid values.
1191
+ [[np.nan, 0.5, 0.1], [0.2, 0.4, np.inf], [-2, 3, 4]]
1192
+ ]
1193
+
1194
+ @pytest.mark.parametrize("u", u)
1195
+ def test_ppf(self, u):
1196
+ dist = StandardNormal()
1197
+ rng = NumericalInverseHermite(dist, u_resolution=1e-12)
1198
+ # Older versions of NumPy throw RuntimeWarnings for comparisons
1199
+ # with nan.
1200
+ with suppress_warnings() as sup:
1201
+ sup.filter(RuntimeWarning, "invalid value encountered in greater")
1202
+ sup.filter(RuntimeWarning, "invalid value encountered in "
1203
+ "greater_equal")
1204
+ sup.filter(RuntimeWarning, "invalid value encountered in less")
1205
+ sup.filter(RuntimeWarning, "invalid value encountered in "
1206
+ "less_equal")
1207
+ res = rng.ppf(u)
1208
+ expected = stats.norm.ppf(u)
1209
+ assert_allclose(res, expected, rtol=1e-9, atol=3e-10)
1210
+ assert res.shape == expected.shape
1211
+
1212
+ @pytest.mark.slow
1213
+ def test_u_error(self):
1214
+ dist = StandardNormal()
1215
+ rng = NumericalInverseHermite(dist, u_resolution=1e-10)
1216
+ max_error, mae = rng.u_error()
1217
+ assert max_error < 1e-10
1218
+ assert mae <= max_error
1219
+ with suppress_warnings() as sup:
1220
+ # ignore warning about u-resolution being too small.
1221
+ sup.filter(RuntimeWarning)
1222
+ rng = NumericalInverseHermite(dist, u_resolution=1e-14)
1223
+ max_error, mae = rng.u_error()
1224
+ assert max_error < 1e-14
1225
+ assert mae <= max_error
1226
+
1227
+
1228
+ class TestDiscreteGuideTable:
1229
+ basic_fail_dists = {
1230
+ 'nchypergeom_fisher', # numerical errors on tails
1231
+ 'nchypergeom_wallenius', # numerical errors on tails
1232
+ 'randint' # fails on 32-bit ubuntu
1233
+ }
1234
+
1235
+ def test_guide_factor_gt3_raises_warning(self):
1236
+ pv = [0.1, 0.3, 0.6]
1237
+ urng = np.random.default_rng()
1238
+ with pytest.warns(RuntimeWarning):
1239
+ DiscreteGuideTable(pv, random_state=urng, guide_factor=7)
1240
+
1241
+ def test_guide_factor_zero_raises_warning(self):
1242
+ pv = [0.1, 0.3, 0.6]
1243
+ urng = np.random.default_rng()
1244
+ with pytest.warns(RuntimeWarning):
1245
+ DiscreteGuideTable(pv, random_state=urng, guide_factor=0)
1246
+
1247
+ def test_negative_guide_factor_raises_warning(self):
1248
+ # This occurs from the UNU.RAN wrapper automatically.
1249
+ # however it already gives a useful warning
1250
+ # Here we just test that a warning is raised.
1251
+ pv = [0.1, 0.3, 0.6]
1252
+ urng = np.random.default_rng()
1253
+ with pytest.warns(RuntimeWarning):
1254
+ DiscreteGuideTable(pv, random_state=urng, guide_factor=-1)
1255
+
1256
+ @pytest.mark.parametrize("distname, params", distdiscrete)
1257
+ def test_basic(self, distname, params):
1258
+ if distname in self.basic_fail_dists:
1259
+ msg = ("DGT fails on these probably because of large domains "
1260
+ "and small computation errors in PMF.")
1261
+ pytest.skip(msg)
1262
+
1263
+ if not isinstance(distname, str):
1264
+ dist = distname
1265
+ else:
1266
+ dist = getattr(stats, distname)
1267
+
1268
+ dist = dist(*params)
1269
+ domain = dist.support()
1270
+
1271
+ if not np.isfinite(domain[1] - domain[0]):
1272
+ # DGT only works with finite domain. So, skip the distributions
1273
+ # with infinite tails.
1274
+ pytest.skip("DGT only works with a finite domain.")
1275
+
1276
+ k = np.arange(domain[0], domain[1]+1)
1277
+ pv = dist.pmf(k)
1278
+ mv_ex = dist.stats('mv')
1279
+ rng = DiscreteGuideTable(dist, random_state=42)
1280
+ check_discr_samples(rng, pv, mv_ex)
1281
+
1282
+ u = [
1283
+ # the correctness of the PPF for equidistant points between 0 and 1.
1284
+ np.linspace(0, 1, num=10000),
1285
+ # test the PPF method for empty arrays
1286
+ [], [[]],
1287
+ # test if nans and infs return nan result.
1288
+ [np.nan], [-np.inf, np.nan, np.inf],
1289
+ # test if a scalar is returned for a scalar input.
1290
+ 0,
1291
+ # test for arrays with nans, values greater than 1 and less than 0,
1292
+ # and some valid values.
1293
+ [[np.nan, 0.5, 0.1], [0.2, 0.4, np.inf], [-2, 3, 4]]
1294
+ ]
1295
+
1296
+ @pytest.mark.parametrize('u', u)
1297
+ def test_ppf(self, u):
1298
+ n, p = 4, 0.1
1299
+ dist = stats.binom(n, p)
1300
+ rng = DiscreteGuideTable(dist, random_state=42)
1301
+
1302
+ # Older versions of NumPy throw RuntimeWarnings for comparisons
1303
+ # with nan.
1304
+ with suppress_warnings() as sup:
1305
+ sup.filter(RuntimeWarning, "invalid value encountered in greater")
1306
+ sup.filter(RuntimeWarning, "invalid value encountered in "
1307
+ "greater_equal")
1308
+ sup.filter(RuntimeWarning, "invalid value encountered in less")
1309
+ sup.filter(RuntimeWarning, "invalid value encountered in "
1310
+ "less_equal")
1311
+
1312
+ res = rng.ppf(u)
1313
+ expected = stats.binom.ppf(u, n, p)
1314
+ assert_equal(res.shape, expected.shape)
1315
+ assert_equal(res, expected)
1316
+
1317
+ @pytest.mark.parametrize("pv, msg", bad_pv_common)
1318
+ def test_bad_pv(self, pv, msg):
1319
+ with pytest.raises(ValueError, match=msg):
1320
+ DiscreteGuideTable(pv)
1321
+
1322
+ # DGT doesn't support infinite tails. So, it should throw an error when
1323
+ # inf is present in the domain.
1324
+ inf_domain = [(-np.inf, np.inf), (np.inf, np.inf), (-np.inf, -np.inf),
1325
+ (0, np.inf), (-np.inf, 0)]
1326
+
1327
+ @pytest.mark.parametrize("domain", inf_domain)
1328
+ def test_inf_domain(self, domain):
1329
+ with pytest.raises(ValueError, match=r"must be finite"):
1330
+ DiscreteGuideTable(stats.binom(10, 0.2), domain=domain)
1331
+
1332
+
1333
+ class TestSimpleRatioUniforms:
1334
+ # pdf with piecewise linear function as transformed density
1335
+ # with T = -1/sqrt with shift. Taken from UNU.RAN test suite
1336
+ # (from file t_srou.c)
1337
+ class dist:
1338
+ def __init__(self, shift):
1339
+ self.shift = shift
1340
+ self.mode = shift
1341
+
1342
+ def pdf(self, x):
1343
+ x -= self.shift
1344
+ y = 1. / (abs(x) + 1.)
1345
+ return 0.5 * y * y
1346
+
1347
+ def cdf(self, x):
1348
+ x -= self.shift
1349
+ if x <= 0.:
1350
+ return 0.5 / (1. - x)
1351
+ else:
1352
+ return 1. - 0.5 / (1. + x)
1353
+
1354
+ dists = [dist(0.), dist(10000.)]
1355
+
1356
+ # exact mean and variance of the distributions in the list dists
1357
+ mv1 = [0., np.inf]
1358
+ mv2 = [10000., np.inf]
1359
+ mvs = [mv1, mv2]
1360
+
1361
+ @pytest.mark.parametrize("dist, mv_ex",
1362
+ zip(dists, mvs))
1363
+ @pytest.mark.thread_unsafe
1364
+ def test_basic(self, dist, mv_ex):
1365
+ rng = SimpleRatioUniforms(dist, mode=dist.mode, random_state=42)
1366
+ check_cont_samples(rng, dist, mv_ex)
1367
+ rng = SimpleRatioUniforms(dist, mode=dist.mode,
1368
+ cdf_at_mode=dist.cdf(dist.mode),
1369
+ random_state=42)
1370
+ check_cont_samples(rng, dist, mv_ex)
1371
+
1372
+ # test domains with inf + nan in them. need to write a custom test for
1373
+ # this because not all methods support infinite tails.
1374
+ @pytest.mark.parametrize("domain, err, msg", inf_nan_domains)
1375
+ def test_inf_nan_domains(self, domain, err, msg):
1376
+ with pytest.raises(err, match=msg):
1377
+ SimpleRatioUniforms(StandardNormal(), domain=domain)
1378
+
1379
+ def test_bad_args(self):
1380
+ # pdf_area < 0
1381
+ with pytest.raises(ValueError, match=r"`pdf_area` must be > 0"):
1382
+ SimpleRatioUniforms(StandardNormal(), mode=0, pdf_area=-1)
1383
+
1384
+
1385
+ class TestRatioUniforms:
1386
+ def test_rv_generation(self):
1387
+ # use KS test to check distribution of rvs
1388
+ # normal distribution
1389
+ f = stats.norm.pdf
1390
+ v = np.sqrt(f(np.sqrt(2))) * np.sqrt(2)
1391
+ u = np.sqrt(f(0))
1392
+ gen = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=12345)
1393
+ assert_equal(stats.kstest(gen.rvs(2500), 'norm')[1] > 0.25, True)
1394
+
1395
+ # exponential distribution
1396
+ gen = RatioUniforms(lambda x: np.exp(-x), umax=1,
1397
+ vmin=0, vmax=2*np.exp(-1), random_state=12345)
1398
+ assert_equal(stats.kstest(gen.rvs(1000), 'expon')[1] > 0.25, True)
1399
+
1400
+ def test_shape(self):
1401
+ # test shape of return value depending on size parameter
1402
+ f = stats.norm.pdf
1403
+ v = np.sqrt(f(np.sqrt(2))) * np.sqrt(2)
1404
+ u = np.sqrt(f(0))
1405
+
1406
+ gen1 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=1234)
1407
+ gen2 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=1234)
1408
+ gen3 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=1234)
1409
+ r1, r2, r3 = gen1.rvs(3), gen2.rvs((3,)), gen3.rvs((3, 1))
1410
+ assert_equal(r1, r2)
1411
+ assert_equal(r2, r3.flatten())
1412
+ assert_equal(r1.shape, (3,))
1413
+ assert_equal(r3.shape, (3, 1))
1414
+
1415
+ gen4 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=12)
1416
+ gen5 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=12)
1417
+ r4, r5 = gen4.rvs(size=(3, 3, 3)), gen5.rvs(size=27)
1418
+ assert_equal(r4.flatten(), r5)
1419
+ assert_equal(r4.shape, (3, 3, 3))
1420
+
1421
+ gen6 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=1234)
1422
+ gen7 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=1234)
1423
+ gen8 = RatioUniforms(f, umax=u, vmin=-v, vmax=v, random_state=1234)
1424
+ r6, r7, r8 = gen6.rvs(), gen7.rvs(1), gen8.rvs((1,))
1425
+ assert_equal(r6, r7)
1426
+ assert_equal(r7, r8)
1427
+
1428
+ def test_random_state(self):
1429
+ f = stats.norm.pdf
1430
+ v = np.sqrt(f(np.sqrt(2))) * np.sqrt(2)
1431
+ umax = np.sqrt(f(0))
1432
+ gen1 = RatioUniforms(f, umax=umax, vmin=-v, vmax=v, random_state=1234)
1433
+ r1 = gen1.rvs(10)
1434
+ rng = np.random.RandomState(1234)
1435
+ gen2 = RatioUniforms(f, umax=umax, vmin=-v, vmax=v, random_state=rng)
1436
+ r2 = gen2.rvs(10)
1437
+ assert_equal(r1, r2)
1438
+
1439
+ def test_exceptions(self):
1440
+ f = stats.norm.pdf
1441
+ # need vmin < vmax
1442
+ with assert_raises(ValueError, match="vmin must be smaller than vmax"):
1443
+ RatioUniforms(pdf=f, umax=1, vmin=3, vmax=1)
1444
+ with assert_raises(ValueError, match="vmin must be smaller than vmax"):
1445
+ RatioUniforms(pdf=f, umax=1, vmin=1, vmax=1)
1446
+ # need umax > 0
1447
+ with assert_raises(ValueError, match="umax must be positive"):
1448
+ RatioUniforms(pdf=f, umax=-1, vmin=1, vmax=3)
1449
+ with assert_raises(ValueError, match="umax must be positive"):
1450
+ RatioUniforms(pdf=f, umax=0, vmin=1, vmax=3)