scipy 1.16.2__cp313-cp313-win_arm64.whl

scipy/signal/tests/test_peak_finding.py

@@ -0,0 +1,915 @@
+import copy
+
+import numpy as np
+import pytest
+from pytest import raises, warns
+from scipy._lib._array_api import xp_assert_close, xp_assert_equal
+
+from scipy.signal._peak_finding import (
+    argrelmax,
+    argrelmin,
+    peak_prominences,
+    peak_widths,
+    _unpack_condition_args,
+    find_peaks,
+    find_peaks_cwt,
+    _identify_ridge_lines
+)
+from scipy.signal.windows import gaussian
+from scipy.signal._peak_finding_utils import _local_maxima_1d, PeakPropertyWarning
+
+
+def _gen_gaussians(center_locs, sigmas, total_length):
+    xdata = np.arange(0, total_length).astype(float)
+    out_data = np.zeros(total_length, dtype=float)
+    for ind, sigma in enumerate(sigmas):
+        tmp = (xdata - center_locs[ind]) / sigma
+        out_data += np.exp(-(tmp**2))
+    return out_data
+
+
+def _gen_gaussians_even(sigmas, total_length):
+    num_peaks = len(sigmas)
+    delta = total_length / (num_peaks + 1)
+    center_locs = np.linspace(delta, total_length - delta, num=num_peaks).astype(int)
+    out_data = _gen_gaussians(center_locs, sigmas, total_length)
+    return out_data, center_locs
+
+
+def _gen_ridge_line(start_locs, max_locs, length, distances, gaps):
+    """
+    Generate coordinates for a ridge line.
+
+    Will be a series of coordinates, starting a start_loc (length 2).
+    The maximum distance between any adjacent columns will be
+    `max_distance`, the max distance between adjacent rows
+    will be `map_gap'.
+
+    `max_locs` should be the size of the intended matrix. The
+    ending coordinates are guaranteed to be less than `max_locs`,
+    although they may not approach `max_locs` at all.
+    """
+
+    def keep_bounds(num, max_val):
+        out = max(num, 0)
+        out = min(out, max_val)
+        return out
+
+    gaps = copy.deepcopy(gaps)
+    distances = copy.deepcopy(distances)
+
+    locs = np.zeros([length, 2], dtype=int)
+    locs[0, :] = start_locs
+    total_length = max_locs[0] - start_locs[0] - sum(gaps)
+    if total_length < length:
+        raise ValueError('Cannot generate ridge line according to constraints')
+    dist_int = length / len(distances) - 1
+    gap_int = length / len(gaps) - 1
+    for ind in range(1, length):
+        nextcol = locs[ind - 1, 1]
+        nextrow = locs[ind - 1, 0] + 1
+        if (ind % dist_int == 0) and (len(distances) > 0):
+            nextcol += ((-1)**ind)*distances.pop()
+        if (ind % gap_int == 0) and (len(gaps) > 0):
+            nextrow += gaps.pop()
+        nextrow = keep_bounds(nextrow, max_locs[0])
+        nextcol = keep_bounds(nextcol, max_locs[1])
+        locs[ind, :] = [nextrow, nextcol]
+
+    return [locs[:, 0], locs[:, 1]]
+
+
+class TestLocalMaxima1d:
+
+    def test_empty(self):
+        """Test with empty signal."""
+        x = np.array([], dtype=np.float64)
+        for array in _local_maxima_1d(x):
+            xp_assert_equal(array, np.array([]), check_dtype=False)
+            assert array.base is None
+
+    def test_linear(self):
+        """Test with linear signal."""
+        x = np.linspace(0, 100)
+        for array in _local_maxima_1d(x):
+            xp_assert_equal(array, np.array([], dtype=np.intp))
+            assert array.base is None
+
+    def test_simple(self):
+        """Test with simple signal."""
+        x = np.linspace(-10, 10, 50)
+        x[2::3] += 1
+        expected = np.arange(2, 50, 3, dtype=np.intp)
+        for array in _local_maxima_1d(x):
+            # For plateaus of size 1, the edges are identical with the
+            # midpoints
+            xp_assert_equal(array, expected, check_dtype=False)
+            assert array.base is None
+
+    def test_flat_maxima(self):
+        """Test if flat maxima are detected correctly."""
+        x = np.array([-1.3, 0, 1, 0, 2, 2, 0, 3, 3, 3, 2.99, 4, 4, 4, 4, -10,
+                      -5, -5, -5, -5, -5, -10])
+        midpoints, left_edges, right_edges = _local_maxima_1d(x)
+        xp_assert_equal(midpoints, np.array([2, 4, 8, 12, 18]), check_dtype=False)
+        xp_assert_equal(left_edges, np.array([2, 4, 7, 11, 16]), check_dtype=False)
+        xp_assert_equal(right_edges, np.array([2, 5, 9, 14, 20]), check_dtype=False)
+
+    @pytest.mark.parametrize('x', [
+        np.array([1., 0, 2]),
+        np.array([3., 3, 0, 4, 4]),
+        np.array([5., 5, 5, 0, 6, 6, 6]),
+    ])
+    def test_signal_edges(self, x):
+        """Test if behavior on signal edges is correct."""
+        for array in _local_maxima_1d(x):
+            xp_assert_equal(array, np.array([], dtype=np.intp))
+            assert array.base is None
+
+    def test_exceptions(self):
+        """Test input validation and raised exceptions."""
+        with raises(ValueError, match="wrong number of dimensions"):
+            _local_maxima_1d(np.ones((1, 1)))
+        with raises(ValueError, match="expected 'const float64_t'"):
+            _local_maxima_1d(np.ones(1, dtype=int))
+        with raises(TypeError, match="list"):
+            _local_maxima_1d([1., 2.])
+        with raises(TypeError, match="'x' must not be None"):
+            _local_maxima_1d(None)
+
+
+class TestRidgeLines:
+
+    def test_empty(self):
+        test_matr = np.zeros([20, 100])
+        lines = _identify_ridge_lines(test_matr, np.full(20, 2), 1)
+        assert len(lines) == 0
+
+    def test_minimal(self):
+        test_matr = np.zeros([20, 100])
+        test_matr[0, 10] = 1
+        lines = _identify_ridge_lines(test_matr, np.full(20, 2), 1)
+        assert len(lines) == 1
+
+        test_matr = np.zeros([20, 100])
+        test_matr[0:2, 10] = 1
+        lines = _identify_ridge_lines(test_matr, np.full(20, 2), 1)
+        assert len(lines) == 1
+
+    def test_single_pass(self):
+        distances = [0, 1, 2, 5]
+        gaps = [0, 1, 2, 0, 1]
+        test_matr = np.zeros([20, 50]) + 1e-12
+        length = 12
+        line = _gen_ridge_line([0, 25], test_matr.shape, length, distances, gaps)
+        test_matr[line[0], line[1]] = 1
+        max_distances = np.full(20, max(distances))
+        identified_lines = _identify_ridge_lines(test_matr,
+                                                 max_distances,
+                                                 max(gaps) + 1)
+        assert len(identified_lines) == 1
+        for iline_, line_ in zip(identified_lines[0], line):
+            xp_assert_equal(iline_, line_, check_dtype=False)
+
+    def test_single_bigdist(self):
+        distances = [0, 1, 2, 5]
+        gaps = [0, 1, 2, 4]
+        test_matr = np.zeros([20, 50])
+        length = 12
+        line = _gen_ridge_line([0, 25], test_matr.shape, length, distances, gaps)
+        test_matr[line[0], line[1]] = 1
+        max_dist = 3
+        max_distances = np.full(20, max_dist)
+        #This should get 2 lines, since the distance is too large
+        identified_lines = _identify_ridge_lines(test_matr,
+                                                 max_distances,
+                                                 max(gaps) + 1)
+        assert len(identified_lines) == 2
+
+        for iline in identified_lines:
+            adists = np.diff(iline[1])
+            np.testing.assert_array_less(np.abs(adists), max_dist)
+
+            agaps = np.diff(iline[0])
+            np.testing.assert_array_less(np.abs(agaps), max(gaps) + 0.1)
+
+    def test_single_biggap(self):
+        distances = [0, 1, 2, 5]
+        max_gap = 3
+        gaps = [0, 4, 2, 1]
+        test_matr = np.zeros([20, 50])
+        length = 12
+        line = _gen_ridge_line([0, 25], test_matr.shape, length, distances, gaps)
+        test_matr[line[0], line[1]] = 1
+        max_dist = 6
+        max_distances = np.full(20, max_dist)
+        #This should get 2 lines, since the gap is too large
+        identified_lines = _identify_ridge_lines(test_matr, max_distances, max_gap)
+        assert len(identified_lines) == 2
+
+        for iline in identified_lines:
+            adists = np.diff(iline[1])
+            np.testing.assert_array_less(np.abs(adists), max_dist)
+
+            agaps = np.diff(iline[0])
+            np.testing.assert_array_less(np.abs(agaps), max(gaps) + 0.1)
+
+    def test_single_biggaps(self):
+        distances = [0]
+        max_gap = 1
+        gaps = [3, 6]
+        test_matr = np.zeros([50, 50])
+        length = 30
+        line = _gen_ridge_line([0, 25], test_matr.shape, length, distances, gaps)
+        test_matr[line[0], line[1]] = 1
+        max_dist = 1
+        max_distances = np.full(50, max_dist)
+        #This should get 3 lines, since the gaps are too large
+        identified_lines = _identify_ridge_lines(test_matr, max_distances, max_gap)
+        assert len(identified_lines) == 3
+
+        for iline in identified_lines:
+            adists = np.diff(iline[1])
+            np.testing.assert_array_less(np.abs(adists), max_dist)
+
+            agaps = np.diff(iline[0])
+            np.testing.assert_array_less(np.abs(agaps), max(gaps) + 0.1)
+
+
+class TestArgrel:
+
+    def test_empty(self):
+        # Regression test for gh-2832.
+        # When there are no relative extrema, make sure that
+        # the number of empty arrays returned matches the
+        # dimension of the input.
+
+        empty_array = np.array([], dtype=int)
+
+        z1 = np.zeros(5)
+
+        i = argrelmin(z1)
+        xp_assert_equal(len(i), 1)
+        xp_assert_equal(i[0], empty_array, check_dtype=False)
+
+        z2 = np.zeros((3, 5))
+
+        row, col = argrelmin(z2, axis=0)
+        xp_assert_equal(row, empty_array, check_dtype=False)
+        xp_assert_equal(col, empty_array, check_dtype=False)
+
+        row, col = argrelmin(z2, axis=1)
+        xp_assert_equal(row, empty_array, check_dtype=False)
+        xp_assert_equal(col, empty_array, check_dtype=False)
+
+    def test_basic(self):
+        # Note: the docstrings for the argrel{min,max,extrema} functions
+        # do not give a guarantee of the order of the indices, so we'll
+        # sort them before testing.
+
+        x = np.array([[1, 2, 2, 3, 2],
+                      [2, 1, 2, 2, 3],
+                      [3, 2, 1, 2, 2],
+                      [2, 3, 2, 1, 2],
+                      [1, 2, 3, 2, 1]])
+
+        row, col = argrelmax(x, axis=0)
+        order = np.argsort(row)
+        xp_assert_equal(row[order], [1, 2, 3], check_dtype=False)
+        xp_assert_equal(col[order], [4, 0, 1], check_dtype=False)
+
+        row, col = argrelmax(x, axis=1)
+        order = np.argsort(row)
+        xp_assert_equal(row[order], [0, 3, 4], check_dtype=False)
+        xp_assert_equal(col[order], [3, 1, 2], check_dtype=False)
+
+        row, col = argrelmin(x, axis=0)
+        order = np.argsort(row)
+        xp_assert_equal(row[order], [1, 2, 3], check_dtype=False)
+        xp_assert_equal(col[order], [1, 2, 3], check_dtype=False)
+
+        row, col = argrelmin(x, axis=1)
+        order = np.argsort(row)
+        xp_assert_equal(row[order], [1, 2, 3], check_dtype=False)
+        xp_assert_equal(col[order], [1, 2, 3], check_dtype=False)
+
+    def test_highorder(self):
+        order = 2
+        sigmas = [1.0, 2.0, 10.0, 5.0, 15.0]
+        test_data, act_locs = _gen_gaussians_even(sigmas, 500)
+        test_data[act_locs + order] = test_data[act_locs]*0.99999
+        test_data[act_locs - order] = test_data[act_locs]*0.99999
+        rel_max_locs = argrelmax(test_data, order=order, mode='clip')[0]
+
+        assert len(rel_max_locs) == len(act_locs)
+        assert (rel_max_locs == act_locs).all()
+
+    def test_2d_gaussians(self):
+        sigmas = [1.0, 2.0, 10.0]
+        test_data, act_locs = _gen_gaussians_even(sigmas, 100)
+        rot_factor = 20
+        rot_range = np.arange(0, len(test_data)) - rot_factor
+        test_data_2 = np.vstack([test_data, test_data[rot_range]])
+        rel_max_rows, rel_max_cols = argrelmax(test_data_2, axis=1, order=1)
+
+        for rw in range(0, test_data_2.shape[0]):
+            inds = (rel_max_rows == rw)
+
+            assert len(rel_max_cols[inds]) == len(act_locs)
+            assert (act_locs == (rel_max_cols[inds] - rot_factor*rw)).all()
+
+
+class TestPeakProminences:
+
+    def test_empty(self):
+        """
+        Test if an empty array is returned if no peaks are provided.
+        """
+        out = peak_prominences([1, 2, 3], [])
+        for arr, dtype in zip(out, [np.float64, np.intp, np.intp]):
+            assert arr.size == 0
+            assert arr.dtype == dtype
+
+        out = peak_prominences([], [])
+        for arr, dtype in zip(out, [np.float64, np.intp, np.intp]):
+            assert arr.size == 0
+            assert arr.dtype == dtype
+
+    def test_basic(self):
+        """
+        Test if height of prominences is correctly calculated in signal with
+        rising baseline (peak widths are 1 sample).
+        """
+        # Prepare basic signal
+        x = np.array([-1, 1.2, 1.2, 1, 3.2, 1.3, 2.88, 2.1])
+        peaks = np.array([1, 2, 4, 6])
+        lbases = np.array([0, 0, 0, 5])
+        rbases = np.array([3, 3, 5, 7])
+        proms = x[peaks] - np.max([x[lbases], x[rbases]], axis=0)
+        # Test if calculation matches handcrafted result
+        out = peak_prominences(x, peaks)
+        xp_assert_equal(out[0], proms, check_dtype=False)
+        xp_assert_equal(out[1], lbases, check_dtype=False)
+        xp_assert_equal(out[2], rbases, check_dtype=False)
+
+    def test_edge_cases(self):
+        """
+        Test edge cases.
+        """
+        # Peaks have same height, prominence and bases
+        x = [0, 2, 1, 2, 1, 2, 0]
+        peaks = [1, 3, 5]
+        proms, lbases, rbases = peak_prominences(x, peaks)
+        xp_assert_equal(proms, np.asarray([2.0, 2, 2]), check_dtype=False)
+        xp_assert_equal(lbases, [0, 0, 0], check_dtype=False)
+        xp_assert_equal(rbases, [6, 6, 6], check_dtype=False)
+
+        # Peaks have same height & prominence but different bases
+        x = [0, 1, 0, 1, 0, 1, 0]
+        peaks = np.array([1, 3, 5])
+        proms, lbases, rbases = peak_prominences(x, peaks)
+        xp_assert_equal(proms, np.asarray([1.0, 1, 1]))
+        xp_assert_equal(lbases, peaks - 1, check_dtype=False)
+        xp_assert_equal(rbases, peaks + 1, check_dtype=False)
+
+    def test_non_contiguous(self):
+        """
+        Test with non-C-contiguous input arrays.
+        """
+        x = np.repeat([-9, 9, 9, 0, 3, 1], 2)
+        peaks = np.repeat([1, 2, 4], 2)
+        proms, lbases, rbases = peak_prominences(x[::2], peaks[::2])
+        xp_assert_equal(proms, np.asarray([9.0, 9, 2]))
+        xp_assert_equal(lbases, [0, 0, 3], check_dtype=False)
+        xp_assert_equal(rbases, [3, 3, 5], check_dtype=False)
+
+    def test_wlen(self):
+        """
+        Test if wlen actually shrinks the evaluation range correctly.
+        """
+        x = [0, 1, 2, 3, 1, 0, -1]
+        peak = [3]
+        # Test rounding behavior of wlen
+        proms = peak_prominences(x, peak)
+        for prom, val in zip(proms, [3.0, 0, 6]):
+            assert prom == val
+
+        for wlen, i in [(8, 0), (7, 0), (6, 0), (5, 1), (3.2, 1), (3, 2), (1.1, 2)]:
+            proms = peak_prominences(x, peak, wlen)
+            for prom, val in zip(proms, [3. - i, 0 + i, 6 - i]):
+                assert prom == val
+
+    def test_exceptions(self):
+        """
+        Verify that exceptions and warnings are raised.
+        """
+        # x with dimension > 1
+        with raises(ValueError, match='1-D array'):
+            peak_prominences([[0, 1, 1, 0]], [1, 2])
+        # peaks with dimension > 1
+        with raises(ValueError, match='1-D array'):
+            peak_prominences([0, 1, 1, 0], [[1, 2]])
+        # x with dimension < 1
+        with raises(ValueError, match='1-D array'):
+            peak_prominences(3, [0,])
+
+        # empty x with supplied
+        with raises(ValueError, match='not a valid index'):
+            peak_prominences([], [0])
+        # invalid indices with non-empty x
+        for p in [-100, -1, 3, 1000]:
+            with raises(ValueError, match='not a valid index'):
+                peak_prominences([1, 0, 2], [p])
+
+        # peaks is not cast-able to np.intp
+        with raises(TypeError, match='cannot safely cast'):
+            peak_prominences([0, 1, 1, 0], [1.1, 2.3])
+
+        # wlen < 3
+        with raises(ValueError, match='wlen'):
+            peak_prominences(np.arange(10), [3, 5], wlen=1)
+
+    @pytest.mark.thread_unsafe
+    def test_warnings(self):
+        """
+        Verify that appropriate warnings are raised.
+        """
+        msg = "some peaks have a prominence of 0"
+        for p in [0, 1, 2]:
+            with warns(PeakPropertyWarning, match=msg):
+                peak_prominences([1, 0, 2], [p,])
+        with warns(PeakPropertyWarning, match=msg):
+            peak_prominences([0, 1, 1, 1, 0], [2], wlen=2)
+
+
+class TestPeakWidths:
+
+    def test_empty(self):
+        """
+        Test if an empty array is returned if no peaks are provided.
+        """
+        widths = peak_widths([], [])[0]
+        assert isinstance(widths, np.ndarray)
+        assert widths.size == 0
+        widths = peak_widths([1, 2, 3], [])[0]
+        assert isinstance(widths, np.ndarray)
+        assert widths.size == 0
+        out = peak_widths([], [])
+        for arr in out:
+            assert isinstance(arr, np.ndarray)
+            assert arr.size == 0
+
+    @pytest.mark.filterwarnings("ignore:some peaks have a width of 0")
+    def test_basic(self):
+        """
+        Test a simple use case with easy to verify results at different relative
+        heights.
+        """
+        x = np.array([1, 0, 1, 2, 1, 0, -1])
+        prominence = 2
+        for rel_height, width_true, lip_true, rip_true in [
+            (0., 0., 3., 3.),  # raises warning
+            (0.25, 1., 2.5, 3.5),
+            (0.5, 2., 2., 4.),
+            (0.75, 3., 1.5, 4.5),
+            (1., 4., 1., 5.),
+            (2., 5., 1., 6.),
+            (3., 5., 1., 6.)
+        ]:
+            width_calc, height, lip_calc, rip_calc = peak_widths(
+                x, [3], rel_height)
+            xp_assert_close(width_calc, np.asarray([width_true]))
+            xp_assert_close(height, np.asarray([2 - rel_height * prominence]))
+            xp_assert_close(lip_calc, np.asarray([lip_true]))
+            xp_assert_close(rip_calc, np.asarray([rip_true]))
+
+    def test_non_contiguous(self):
+        """
+        Test with non-C-contiguous input arrays.
+        """
+        x = np.repeat([0, 100, 50], 4)
+        peaks = np.repeat([1], 3)
+        result = peak_widths(x[::4], peaks[::3])
+        xp_assert_equal(result,
+                        np.asarray([[0.75], [75], [0.75], [1.5]])
+        )
+
+    def test_exceptions(self):
+        """
+        Verify that argument validation works as intended.
+        """
+        with raises(ValueError, match='1-D array'):
+            # x with dimension > 1
+            peak_widths(np.zeros((3, 4)), np.ones(3))
+        with raises(ValueError, match='1-D array'):
+            # x with dimension < 1
+            peak_widths(3, [0])
+        with raises(ValueError, match='1-D array'):
+            # peaks with dimension > 1
+            peak_widths(np.arange(10), np.ones((3, 2), dtype=np.intp))
+        with raises(ValueError, match='1-D array'):
+            # peaks with dimension < 1
+            peak_widths(np.arange(10), 3)
+        with raises(ValueError, match='not a valid index'):
+            # peak pos exceeds x.size
+            peak_widths(np.arange(10), [8, 11])
+        with raises(ValueError, match='not a valid index'):
+            # empty x with peaks supplied
+            peak_widths([], [1, 2])
+        with raises(TypeError, match='cannot safely cast'):
+            # peak cannot be safely cast to intp
+            peak_widths(np.arange(10), [1.1, 2.3])
+        with raises(ValueError, match='rel_height'):
+            # rel_height is < 0
+            peak_widths([0, 1, 0, 1, 0], [1, 3], rel_height=-1)
+        with raises(TypeError, match='None'):
+            # prominence data contains None
+            peak_widths([1, 2, 1], [1], prominence_data=(None, None, None))
+
+    @pytest.mark.thread_unsafe
+    def test_warnings(self):
+        """
+        Verify that appropriate warnings are raised.
+        """
+        msg = "some peaks have a width of 0"
+        with warns(PeakPropertyWarning, match=msg):
+            # Case: rel_height is 0
+            peak_widths([0, 1, 0], [1], rel_height=0)
+        with warns(PeakPropertyWarning, match=msg):
+            # Case: prominence is 0 and bases are identical
+            peak_widths(
+                [0, 1, 1, 1, 0], [2],
+                prominence_data=(np.array([0.], np.float64),
+                                 np.array([2], np.intp),
+                                 np.array([2], np.intp))
+            )
+
+    def test_mismatching_prominence_data(self):
+        """Test with mismatching peak and / or prominence data."""
+        x = [0, 1, 0]
+        peak = [1]
+        for i, (prominences, left_bases, right_bases) in enumerate([
+            ((1.,), (-1,), (2,)),  # left base not in x
+            ((1.,), (0,), (3,)),  # right base not in x
+            ((1.,), (2,), (0,)),  # swapped bases same as peak
+            ((1., 1.), (0, 0), (2, 2)),  # array shapes don't match peaks
+            ((1., 1.), (0,), (2,)),  # arrays with different shapes
+            ((1.,), (0, 0), (2,)),  # arrays with different shapes
+            ((1.,), (0,), (2, 2))  # arrays with different shapes
+        ]):
+            # Make sure input is matches output of signal.peak_prominences
+            prominence_data = (np.array(prominences, dtype=np.float64),
+                               np.array(left_bases, dtype=np.intp),
+                               np.array(right_bases, dtype=np.intp))
+            # Test for correct exception
+            if i < 3:
+                match = "prominence data is invalid for peak"
+            else:
+                match = "arrays in `prominence_data` must have the same shape"
+            with raises(ValueError, match=match):
+                peak_widths(x, peak, prominence_data=prominence_data)
+
+    @pytest.mark.filterwarnings("ignore:some peaks have a width of 0")
+    def test_intersection_rules(self):
+        """Test if x == eval_height counts as an intersection."""
+        # Flatt peak with two possible intersection points if evaluated at 1
+        x = [0, 1, 2, 1, 3, 3, 3, 1, 2, 1, 0]
+        # relative height is 0 -> width is 0 as well, raises warning
+        xp_assert_close(peak_widths(x, peaks=[5], rel_height=0),
+                        [(0.,), (3.,), (5.,), (5.,)])
+        # width_height == x counts as intersection -> nearest 1 is chosen
+        xp_assert_close(peak_widths(x, peaks=[5], rel_height=2/3),
+                        [(4.,), (1.,), (3.,), (7.,)])
+
+
+def test_unpack_condition_args():
+    """
+    Verify parsing of condition arguments for `scipy.signal.find_peaks` function.
+    """
+    x = np.arange(10)
+    amin_true = x
+    amax_true = amin_true + 10
+    peaks = amin_true[1::2]
+
+    # Test unpacking with None or interval
+    assert (None, None) == _unpack_condition_args((None, None), x, peaks)
+    assert (1, None) == _unpack_condition_args(1, x, peaks)
+    assert (1, None) == _unpack_condition_args((1, None), x, peaks)
+    assert (None, 2) == _unpack_condition_args((None, 2), x, peaks)
+    assert (3., 4.5) == _unpack_condition_args((3., 4.5), x, peaks)
+
+    # Test if borders are correctly reduced with `peaks`
+    amin_calc, amax_calc = _unpack_condition_args((amin_true, amax_true), x, peaks)
+    xp_assert_equal(amin_calc, amin_true[peaks])
+    xp_assert_equal(amax_calc, amax_true[peaks])
+
+    # Test raises if array borders don't match x
+    with raises(ValueError, match="array size of lower"):
+        _unpack_condition_args(amin_true, np.arange(11), peaks)
+    with raises(ValueError, match="array size of upper"):
+        _unpack_condition_args((None, amin_true), np.arange(11), peaks)
+
+
+class TestFindPeaks:
+
+    # Keys of optionally returned properties
+    property_keys = {'peak_heights', 'left_thresholds', 'right_thresholds',
+                     'prominences', 'left_bases', 'right_bases', 'widths',
+                     'width_heights', 'left_ips', 'right_ips'}
+
+    def test_constant(self):
+        """
+        Test behavior for signal without local maxima.
+        """
+        open_interval = (None, None)
+        peaks, props = find_peaks(np.ones(10),
+                                  height=open_interval, threshold=open_interval,
+                                  prominence=open_interval, width=open_interval)
+        assert peaks.size == 0
+        for key in self.property_keys:
+            assert props[key].size == 0
+
+    def test_plateau_size(self):
+        """
+        Test plateau size condition for peaks.
+        """
+        # Prepare signal with peaks with peak_height == plateau_size
+        plateau_sizes = np.array([1, 2, 3, 4, 8, 20, 111])
+        x = np.zeros(plateau_sizes.size * 2 + 1)
+        x[1::2] = plateau_sizes
+        repeats = np.ones(x.size, dtype=int)
+        repeats[1::2] = x[1::2]
+        x = np.repeat(x, repeats)
+
+        # Test full output
+        peaks, props = find_peaks(x, plateau_size=(None, None))
+        xp_assert_equal(peaks, [1, 3, 7, 11, 18, 33, 100], check_dtype=False)
+        xp_assert_equal(props["plateau_sizes"], plateau_sizes, check_dtype=False)
+        xp_assert_equal(props["left_edges"], peaks - (plateau_sizes - 1) // 2,
+                        check_dtype=False)
+        xp_assert_equal(props["right_edges"], peaks + plateau_sizes // 2,
+                        check_dtype=False)
+
+        # Test conditions
+        xp_assert_equal(find_peaks(x, plateau_size=4)[0], [11, 18, 33, 100],
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, plateau_size=(None, 3.5))[0], [1, 3, 7],
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, plateau_size=(5, 50))[0], [18, 33],
+                        check_dtype=False)
+
+    def test_height_condition(self):
+        """
+        Test height condition for peaks.
+        """
+        x = (0., 1/3, 0., 2.5, 0, 4., 0)
+        peaks, props = find_peaks(x, height=(None, None))
+        xp_assert_equal(peaks, np.array([1, 3, 5]), check_dtype=False)
+        xp_assert_equal(props['peak_heights'], np.array([1/3, 2.5, 4.]),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, height=0.5)[0], np.array([3, 5]),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, height=(None, 3))[0], np.array([1, 3]),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, height=(2, 3))[0], np.array([3]),
+                        check_dtype=False)
+
+    def test_threshold_condition(self):
+        """
+        Test threshold condition for peaks.
+        """
+        x = (0, 2, 1, 4, -1)
+        peaks, props = find_peaks(x, threshold=(None, None))
+        xp_assert_equal(peaks, np.array([1, 3]), check_dtype=False)
+        xp_assert_equal(props['left_thresholds'], np.array([2.0, 3.0]))
+        xp_assert_equal(props['right_thresholds'], np.array([1.0, 5.0]))
+        xp_assert_equal(find_peaks(x, threshold=2)[0], np.array([3]),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, threshold=3.5)[0], np.array([], dtype=int),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, threshold=(None, 5))[0], np.array([1, 3]),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, threshold=(None, 4))[0], np.array([1]),
+                        check_dtype=False)
+        xp_assert_equal(find_peaks(x, threshold=(2, 4))[0], np.array([], dtype=int),
+                        check_dtype=False)
+
+    def test_distance_condition(self):
+        """
+        Test distance condition for peaks.
+        """
+        # Peaks of different height with constant distance 3
+        peaks_all = np.arange(1, 21, 3)
+        x = np.zeros(21)
+        x[peaks_all] += np.linspace(1, 2, peaks_all.size)
+
+        # Test if peaks with "minimal" distance are still selected (distance = 3)
+        xp_assert_equal(find_peaks(x, distance=3)[0], peaks_all, check_dtype=False)
+
+        # Select every second peak (distance > 3)
+        peaks_subset = find_peaks(x, distance=3.0001)[0]
+        # Test if peaks_subset is subset of peaks_all
+        assert np.setdiff1d(peaks_subset, peaks_all, assume_unique=True).size == 0
+
+        # Test if every second peak was removed
+        dfs = np.diff(peaks_subset)
+        xp_assert_equal(dfs, 6*np.ones_like(dfs))
+
+        # Test priority of peak removal
+        x = [-2, 1, -1, 0, -3]
+        peaks_subset = find_peaks(x, distance=10)[0]  # use distance > x size
+        assert peaks_subset.size == 1 and peaks_subset[0] == 1
+
+    def test_prominence_condition(self):
+        """
+        Test prominence condition for peaks.
+        """
+        x = np.linspace(0, 10, 100)
+        peaks_true = np.arange(1, 99, 2)
+        offset = np.linspace(1, 10, peaks_true.size)
+        x[peaks_true] += offset
+        prominences = x[peaks_true] - x[peaks_true + 1]
+        interval = (3, 9)
+        keep = np.nonzero(
+            (interval[0] <= prominences) & (prominences <= interval[1]))
+
+        peaks_calc, properties = find_peaks(x, prominence=interval)
+        xp_assert_equal(peaks_calc, peaks_true[keep], check_dtype=False)
+        xp_assert_equal(properties['prominences'], prominences[keep], check_dtype=False)
+        xp_assert_equal(properties['left_bases'],
+                        np.zeros_like(properties['left_bases']))
+        xp_assert_equal(properties['right_bases'], peaks_true[keep] + 1,
+                        check_dtype=False)
+
+    def test_width_condition(self):
+        """
+        Test width condition for peaks.
+        """
+        x = np.array([1, 0, 1, 2, 1, 0, -1, 4, 0])
+        peaks, props = find_peaks(x, width=(None, 2), rel_height=0.75)
+        assert peaks.size == 1
+        xp_assert_equal(peaks, 7*np.ones_like(peaks))
+        xp_assert_close(props['widths'], np.asarray([1.35]))
+        xp_assert_close(props['width_heights'], np.asarray([1.]))
+        xp_assert_close(props['left_ips'], np.asarray([6.4]))
+        xp_assert_close(props['right_ips'], np.asarray([7.75]))
+
+    def test_properties(self):
+        """
+        Test returned properties.
+        """
+        open_interval = (None, None)
+        x = [0, 1, 0, 2, 1.5, 0, 3, 0, 5, 9]
+        peaks, props = find_peaks(x,
+                                  height=open_interval, threshold=open_interval,
+                                  prominence=open_interval, width=open_interval)
+        assert len(props) == len(self.property_keys)
+        for key in self.property_keys:
+            assert peaks.size == props[key].size
+
+    def test_raises(self):
+        """
+        Test exceptions raised by function.
+        """
+        with raises(ValueError, match="1-D array"):
+            find_peaks(np.array(1))
+        with raises(ValueError, match="1-D array"):
+            find_peaks(np.ones((2, 2)))
+        with raises(ValueError, match="distance"):
+            find_peaks(np.arange(10), distance=-1)
+
+    @pytest.mark.filterwarnings("ignore:some peaks have a prominence of 0",
+                                "ignore:some peaks have a width of 0")
+    def test_wlen_smaller_plateau(self):
+        """
+        Test behavior of prominence and width calculation if the given window
+        length is smaller than a peak's plateau size.
+
+        Regression test for gh-9110.
+        """
+        peaks, props = find_peaks([0, 1, 1, 1, 0], prominence=(None, None),
+                                  width=(None, None), wlen=2)
+        xp_assert_equal(peaks, 2 * np.ones_like(peaks))
+        xp_assert_equal(props["prominences"], np.zeros_like(props["prominences"]))
+        xp_assert_equal(props["widths"], np.zeros_like(props["widths"]))
+        xp_assert_equal(props["width_heights"], np.ones_like(props["width_heights"]))
+        for key in ("left_bases", "right_bases", "left_ips", "right_ips"):
+            xp_assert_equal(props[key], peaks, check_dtype=False)
+
+    @pytest.mark.parametrize("kwargs", [
+        {},
+        {"distance": 3.0},
+        {"prominence": (None, None)},
+        {"width": (None, 2)},
+
+    ])
+    def test_readonly_array(self, kwargs):
+        """
+        Test readonly arrays are accepted.
+        """
+        x = np.linspace(0, 10, 15)
+        x_readonly = x.copy()
+        x_readonly.flags.writeable = False
+
+        peaks, _ = find_peaks(x)
+        peaks_readonly, _ = find_peaks(x_readonly, **kwargs)
+
+        xp_assert_close(peaks, peaks_readonly)
+
+
+class TestFindPeaksCwt:
+
+    def test_find_peaks_exact(self):
+        """
+        Generate a series of gaussians and attempt to find the peak locations.
+        """
+        sigmas = [5.0, 3.0, 10.0, 20.0, 10.0, 50.0]
+        num_points = 500
+        test_data, act_locs = _gen_gaussians_even(sigmas, num_points)
+        widths = np.arange(0.1, max(sigmas))
+        found_locs = find_peaks_cwt(test_data, widths, gap_thresh=2, min_snr=0,
+                                         min_length=None)
+        xp_assert_equal(found_locs, act_locs,
+                        check_dtype=False,
+                        err_msg="Found maximum locations did not equal those expected"
+        )
+
+    def test_find_peaks_withnoise(self):
+        """
+        Verify that peak locations are (approximately) found
+        for a series of gaussians with added noise.
+        """
+        sigmas = [5.0, 3.0, 10.0, 20.0, 10.0, 50.0]
+        num_points = 500
+        test_data, act_locs = _gen_gaussians_even(sigmas, num_points)
+        widths = np.arange(0.1, max(sigmas))
+        noise_amp = 0.07
+        np.random.seed(18181911)
+        test_data += (np.random.rand(num_points) - 0.5)*(2*noise_amp)
+        found_locs = find_peaks_cwt(test_data, widths, min_length=15,
+                                         gap_thresh=1, min_snr=noise_amp / 5)
+
+        err_msg ='Different number of peaks found than expected'
+        assert len(found_locs) == len(act_locs), err_msg
+        diffs = np.abs(found_locs - act_locs)
+        max_diffs = np.array(sigmas) / 5
+        np.testing.assert_array_less(diffs, max_diffs, 'Maximum location differed' +
+                                     f'by more than {max_diffs}')
+
+    def test_find_peaks_nopeak(self):
+        """
+        Verify that no peak is found in
+        data that's just noise.
+        """
+        noise_amp = 1.0
+        num_points = 100
+        rng = np.random.RandomState(181819141)
+        test_data = (rng.rand(num_points) - 0.5)*(2*noise_amp)
+        widths = np.arange(10, 50)
+        found_locs = find_peaks_cwt(test_data, widths, min_snr=5, noise_perc=30)
+        assert len(found_locs) == 0
+
+    def test_find_peaks_with_non_default_wavelets(self):
+        x = gaussian(200, 2)
+        widths = np.array([1, 2, 3, 4])
+        a = find_peaks_cwt(x, widths, wavelet=gaussian)
+
+        xp_assert_equal(a, np.asarray([100]), check_dtype=False)
+
+    def test_find_peaks_window_size(self):
+        """
+        Verify that window_size is passed correctly to private function and
+        affects the result.
+        """
+        sigmas = [2.0, 2.0]
+        num_points = 1000
+        test_data, act_locs = _gen_gaussians_even(sigmas, num_points)
+        widths = np.arange(0.1, max(sigmas), 0.2)
+        noise_amp = 0.05
+        rng = np.random.RandomState(18181911)
+        test_data += (rng.rand(num_points) - 0.5)*(2*noise_amp)
+
+        # Possibly contrived negative region to throw off peak finding
+        # when window_size is too large
+        test_data[250:320] -= 1
+
+        found_locs = find_peaks_cwt(test_data, widths, gap_thresh=2, min_snr=3,
+                                    min_length=None, window_size=None)
+        with pytest.raises(AssertionError):
+            assert found_locs.size == act_locs.size
+
+        found_locs = find_peaks_cwt(test_data, widths, gap_thresh=2, min_snr=3,
+                                    min_length=None, window_size=20)
+        assert found_locs.size == act_locs.size
+
+    def test_find_peaks_with_one_width(self):
+        """
+        Verify that the `width` argument
+        in `find_peaks_cwt` can be a float
+        """
+        xs = np.arange(0, np.pi, 0.05)
+        test_data = np.sin(xs)
+        widths = 1
+        found_locs = find_peaks_cwt(test_data, widths)
+
+        np.testing.assert_equal(found_locs, 32)