scipy 1.16.2__cp313-cp313-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp313-win_arm64.lib +0 -0
- scipy/_cyutility.cp313-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp313-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp313-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp313-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp313-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp313-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp313-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp313-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp313-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp313-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp313-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp313-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp313-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp313-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp313-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp313-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp313-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp313-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp313-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
- scipy/fft/tests/test_backend.py +98 -0
- scipy/fft/tests/test_basic.py +504 -0
- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
- scipy/fftpack/_basic.py +428 -0
- scipy/fftpack/_helper.py +115 -0
- scipy/fftpack/_pseudo_diffs.py +554 -0
- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
- scipy/fftpack/convolve.cp313-win_arm64.lib +0 -0
- scipy/fftpack/convolve.cp313-win_arm64.pyd +0 -0
- scipy/fftpack/helper.py +19 -0
- scipy/fftpack/pseudo_diffs.py +22 -0
- scipy/fftpack/realtransforms.py +19 -0
- scipy/fftpack/tests/__init__.py +0 -0
- scipy/fftpack/tests/fftw_double_ref.npz +0 -0
- scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
- scipy/fftpack/tests/fftw_single_ref.npz +0 -0
- scipy/fftpack/tests/test.npz +0 -0
- scipy/fftpack/tests/test_basic.py +877 -0
- scipy/fftpack/tests/test_helper.py +54 -0
- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp313-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp313-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
- scipy/integrate/_ivp/base.py +290 -0
- scipy/integrate/_ivp/bdf.py +478 -0
- scipy/integrate/_ivp/common.py +451 -0
- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
- scipy/integrate/_ivp/radau.py +572 -0
- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
- scipy/integrate/_lsoda.cp313-win_arm64.lib +0 -0
- scipy/integrate/_lsoda.cp313-win_arm64.pyd +0 -0
- scipy/integrate/_ode.py +1395 -0
- scipy/integrate/_odepack.cp313-win_arm64.lib +0 -0
- scipy/integrate/_odepack.cp313-win_arm64.pyd +0 -0
- scipy/integrate/_odepack_py.py +273 -0
- scipy/integrate/_quad_vec.py +674 -0
- scipy/integrate/_quadpack.cp313-win_arm64.lib +0 -0
- scipy/integrate/_quadpack.cp313-win_arm64.pyd +0 -0
- scipy/integrate/_quadpack_py.py +1283 -0
- scipy/integrate/_quadrature.py +1336 -0
- scipy/integrate/_rules/__init__.py +12 -0
- scipy/integrate/_rules/_base.py +518 -0
- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
- scipy/integrate/_test_multivariate.cp313-win_arm64.lib +0 -0
- scipy/integrate/_test_multivariate.cp313-win_arm64.pyd +0 -0
- scipy/integrate/_test_odeint_banded.cp313-win_arm64.lib +0 -0
- scipy/integrate/_test_odeint_banded.cp313-win_arm64.pyd +0 -0
- scipy/integrate/_vode.cp313-win_arm64.lib +0 -0
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- scipy/integrate/lsoda.py +15 -0
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- scipy/integrate/quadpack.py +23 -0
- scipy/integrate/tests/__init__.py +0 -0
- scipy/integrate/tests/test__quad_vec.py +211 -0
- scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
- scipy/integrate/tests/test_bvp.py +714 -0
- scipy/integrate/tests/test_cubature.py +1375 -0
- scipy/integrate/tests/test_integrate.py +840 -0
- scipy/integrate/tests/test_odeint_jac.py +74 -0
- scipy/integrate/tests/test_quadpack.py +680 -0
- scipy/integrate/tests/test_quadrature.py +730 -0
- scipy/integrate/tests/test_tanhsinh.py +1171 -0
- scipy/integrate/vode.py +15 -0
- scipy/interpolate/__init__.py +228 -0
- scipy/interpolate/_bary_rational.py +715 -0
- scipy/interpolate/_bsplines.py +2469 -0
- scipy/interpolate/_cubic.py +973 -0
- scipy/interpolate/_dfitpack.cp313-win_arm64.lib +0 -0
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- scipy/io/_fast_matrix_market/__init__.py +600 -0
- scipy/io/_fast_matrix_market/_fmm_core.cp313-win_arm64.lib +0 -0
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- scipy/io/_harwell_boeing/__init__.py +7 -0
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[0, 1, 1, 1, 4, 7, 7, 7, 8],
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[0, 1, 2, 3, 4, 5, 6, 7, 8],
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expected = xp.asarray(expected)
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assert_array_almost_equal(ft, expected)
|
119
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+
|
120
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+
@xfail_xp_backends('cupy', reason='CuPy does not have distance_transform_bf.')
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121
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+
@pytest.mark.parametrize('dtype', types)
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122
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+
def test_distance_transform_bf03(self, dtype, xp):
|
123
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+
dtype = getattr(xp, dtype)
|
124
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+
|
125
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+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
126
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+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
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[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
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+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
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129
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[0, 0, 1, 1, 1, 1, 1, 0, 0],
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+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
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+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
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[0, 0, 0, 0, 0, 0, 0, 0, 0],
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133
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[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
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out, ft = ndimage.distance_transform_bf(data, 'chessboard',
|
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return_indices=True)
|
136
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+
|
137
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+
expected = [[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
138
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+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
139
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+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
140
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+
[0, 0, 1, 1, 2, 1, 1, 0, 0],
|
141
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+
[0, 0, 1, 2, 2, 2, 1, 0, 0],
|
142
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+
[0, 0, 1, 1, 2, 1, 1, 0, 0],
|
143
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+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
144
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+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
145
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+
[0, 0, 0, 0, 0, 0, 0, 0, 0]]
|
146
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+
expected = xp.asarray(expected)
|
147
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+
assert_array_almost_equal(out, expected)
|
148
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+
|
149
|
+
expected = [[[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
150
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+
[1, 1, 1, 1, 1, 1, 1, 1, 1],
|
151
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+
[2, 2, 2, 2, 1, 2, 2, 2, 2],
|
152
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+
[3, 3, 4, 2, 2, 2, 4, 3, 3],
|
153
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+
[4, 4, 5, 6, 6, 6, 5, 4, 4],
|
154
|
+
[5, 5, 6, 6, 7, 6, 6, 5, 5],
|
155
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+
[6, 6, 6, 7, 7, 7, 6, 6, 6],
|
156
|
+
[7, 7, 7, 7, 7, 7, 7, 7, 7],
|
157
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+
[8, 8, 8, 8, 8, 8, 8, 8, 8]],
|
158
|
+
[[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
159
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
160
|
+
[0, 1, 2, 2, 5, 6, 6, 7, 8],
|
161
|
+
[0, 1, 1, 2, 6, 6, 7, 7, 8],
|
162
|
+
[0, 1, 1, 2, 6, 7, 7, 7, 8],
|
163
|
+
[0, 1, 2, 2, 6, 6, 7, 7, 8],
|
164
|
+
[0, 1, 2, 4, 5, 6, 6, 7, 8],
|
165
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
166
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8]]]
|
167
|
+
expected = xp.asarray(expected)
|
168
|
+
assert_array_almost_equal(ft, expected)
|
169
|
+
|
170
|
+
@skip_xp_backends(
|
171
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+
np_only=True, reason='inplace distances= arrays are numpy-specific'
|
172
|
+
)
|
173
|
+
@pytest.mark.parametrize('dtype', types)
|
174
|
+
def test_distance_transform_bf04(self, dtype, xp):
|
175
|
+
dtype = getattr(xp, dtype)
|
176
|
+
|
177
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
178
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
179
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
180
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
181
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
182
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
183
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
184
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
185
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
186
|
+
tdt, tft = ndimage.distance_transform_bf(data, return_indices=1)
|
187
|
+
dts = []
|
188
|
+
fts = []
|
189
|
+
dt = xp.zeros(data.shape, dtype=xp.float64)
|
190
|
+
ndimage.distance_transform_bf(data, distances=dt)
|
191
|
+
dts.append(dt)
|
192
|
+
ft = ndimage.distance_transform_bf(
|
193
|
+
data, return_distances=False, return_indices=1)
|
194
|
+
fts.append(ft)
|
195
|
+
ft = np.indices(data.shape, dtype=xp.int32)
|
196
|
+
ndimage.distance_transform_bf(
|
197
|
+
data, return_distances=False, return_indices=True, indices=ft)
|
198
|
+
fts.append(ft)
|
199
|
+
dt, ft = ndimage.distance_transform_bf(
|
200
|
+
data, return_indices=1)
|
201
|
+
dts.append(dt)
|
202
|
+
fts.append(ft)
|
203
|
+
dt = xp.zeros(data.shape, dtype=xp.float64)
|
204
|
+
ft = ndimage.distance_transform_bf(
|
205
|
+
data, distances=dt, return_indices=True)
|
206
|
+
dts.append(dt)
|
207
|
+
fts.append(ft)
|
208
|
+
ft = np.indices(data.shape, dtype=xp.int32)
|
209
|
+
dt = ndimage.distance_transform_bf(
|
210
|
+
data, return_indices=True, indices=ft)
|
211
|
+
dts.append(dt)
|
212
|
+
fts.append(ft)
|
213
|
+
dt = xp.zeros(data.shape, dtype=xp.float64)
|
214
|
+
ft = np.indices(data.shape, dtype=xp.int32)
|
215
|
+
ndimage.distance_transform_bf(
|
216
|
+
data, distances=dt, return_indices=True, indices=ft)
|
217
|
+
dts.append(dt)
|
218
|
+
fts.append(ft)
|
219
|
+
for dt in dts:
|
220
|
+
assert_array_almost_equal(tdt, dt)
|
221
|
+
for ft in fts:
|
222
|
+
assert_array_almost_equal(tft, ft)
|
223
|
+
|
224
|
+
@xfail_xp_backends('cupy', reason='CuPy does not have distance_transform_bf')
|
225
|
+
@pytest.mark.parametrize('dtype', types)
|
226
|
+
def test_distance_transform_bf05(self, dtype, xp):
|
227
|
+
dtype = getattr(xp, dtype)
|
228
|
+
|
229
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
230
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
231
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
232
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
233
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
234
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
235
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
236
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
237
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
238
|
+
out, ft = ndimage.distance_transform_bf(
|
239
|
+
data, 'euclidean', return_indices=True, sampling=[2, 2])
|
240
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
241
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
242
|
+
[0, 0, 0, 4, 4, 4, 0, 0, 0],
|
243
|
+
[0, 0, 4, 8, 16, 8, 4, 0, 0],
|
244
|
+
[0, 0, 4, 16, 32, 16, 4, 0, 0],
|
245
|
+
[0, 0, 4, 8, 16, 8, 4, 0, 0],
|
246
|
+
[0, 0, 0, 4, 4, 4, 0, 0, 0],
|
247
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
248
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]]
|
249
|
+
expected = xp.asarray(expected)
|
250
|
+
assert_array_almost_equal(out * out, expected)
|
251
|
+
|
252
|
+
expected = [[[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
253
|
+
[1, 1, 1, 1, 1, 1, 1, 1, 1],
|
254
|
+
[2, 2, 2, 2, 1, 2, 2, 2, 2],
|
255
|
+
[3, 3, 3, 2, 1, 2, 3, 3, 3],
|
256
|
+
[4, 4, 4, 4, 6, 4, 4, 4, 4],
|
257
|
+
[5, 5, 6, 6, 7, 6, 6, 5, 5],
|
258
|
+
[6, 6, 6, 7, 7, 7, 6, 6, 6],
|
259
|
+
[7, 7, 7, 7, 7, 7, 7, 7, 7],
|
260
|
+
[8, 8, 8, 8, 8, 8, 8, 8, 8]],
|
261
|
+
[[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
262
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
263
|
+
[0, 1, 2, 2, 4, 6, 6, 7, 8],
|
264
|
+
[0, 1, 1, 2, 4, 6, 7, 7, 8],
|
265
|
+
[0, 1, 1, 1, 6, 7, 7, 7, 8],
|
266
|
+
[0, 1, 2, 2, 4, 6, 6, 7, 8],
|
267
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
268
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
269
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8]]]
|
270
|
+
expected = xp.asarray(expected)
|
271
|
+
assert_array_almost_equal(ft, expected)
|
272
|
+
|
273
|
+
@xfail_xp_backends('cupy', reason='CuPy does not have distance_transform_bf')
|
274
|
+
@pytest.mark.parametrize('dtype', types)
|
275
|
+
def test_distance_transform_bf06(self, dtype, xp):
|
276
|
+
dtype = getattr(xp, dtype)
|
277
|
+
|
278
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
279
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
280
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
281
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
282
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
283
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
284
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
285
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
286
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
287
|
+
out, ft = ndimage.distance_transform_bf(
|
288
|
+
data, 'euclidean', return_indices=True, sampling=[2, 1])
|
289
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
290
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
291
|
+
[0, 0, 0, 1, 4, 1, 0, 0, 0],
|
292
|
+
[0, 0, 1, 4, 8, 4, 1, 0, 0],
|
293
|
+
[0, 0, 1, 4, 9, 4, 1, 0, 0],
|
294
|
+
[0, 0, 1, 4, 8, 4, 1, 0, 0],
|
295
|
+
[0, 0, 0, 1, 4, 1, 0, 0, 0],
|
296
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
297
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]]
|
298
|
+
expected = xp.asarray(expected)
|
299
|
+
assert_array_almost_equal(out * out, expected)
|
300
|
+
|
301
|
+
expected = [[[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
302
|
+
[1, 1, 1, 1, 1, 1, 1, 1, 1],
|
303
|
+
[2, 2, 2, 2, 2, 2, 2, 2, 2],
|
304
|
+
[3, 3, 3, 3, 2, 3, 3, 3, 3],
|
305
|
+
[4, 4, 4, 4, 4, 4, 4, 4, 4],
|
306
|
+
[5, 5, 5, 5, 6, 5, 5, 5, 5],
|
307
|
+
[6, 6, 6, 6, 7, 6, 6, 6, 6],
|
308
|
+
[7, 7, 7, 7, 7, 7, 7, 7, 7],
|
309
|
+
[8, 8, 8, 8, 8, 8, 8, 8, 8]],
|
310
|
+
[[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
311
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
312
|
+
[0, 1, 2, 2, 6, 6, 6, 7, 8],
|
313
|
+
[0, 1, 1, 1, 6, 7, 7, 7, 8],
|
314
|
+
[0, 1, 1, 1, 7, 7, 7, 7, 8],
|
315
|
+
[0, 1, 1, 1, 6, 7, 7, 7, 8],
|
316
|
+
[0, 1, 2, 2, 4, 6, 6, 7, 8],
|
317
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
318
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8]]]
|
319
|
+
expected = xp.asarray(expected)
|
320
|
+
assert_array_almost_equal(ft, expected)
|
321
|
+
|
322
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_bf")
|
323
|
+
def test_distance_transform_bf07(self, xp):
|
324
|
+
# test input validation per discussion on PR #13302
|
325
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
326
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
327
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
328
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
329
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
330
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
331
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
332
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
333
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]])
|
334
|
+
with assert_raises(RuntimeError):
|
335
|
+
ndimage.distance_transform_bf(
|
336
|
+
data, return_distances=False, return_indices=False
|
337
|
+
)
|
338
|
+
|
339
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_cdt")
|
340
|
+
@pytest.mark.parametrize('dtype', types)
|
341
|
+
def test_distance_transform_cdt01(self, dtype, xp):
|
342
|
+
dtype = getattr(xp, dtype)
|
343
|
+
|
344
|
+
# chamfer type distance (cdt) transform
|
345
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
346
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
347
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
348
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
349
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
350
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
351
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
352
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
353
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
354
|
+
out, ft = ndimage.distance_transform_cdt(
|
355
|
+
data, 'cityblock', return_indices=True)
|
356
|
+
bf = ndimage.distance_transform_bf(data, 'cityblock')
|
357
|
+
assert_array_almost_equal(bf, out)
|
358
|
+
|
359
|
+
expected = [[[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
360
|
+
[1, 1, 1, 1, 1, 1, 1, 1, 1],
|
361
|
+
[2, 2, 2, 1, 1, 1, 2, 2, 2],
|
362
|
+
[3, 3, 2, 1, 1, 1, 2, 3, 3],
|
363
|
+
[4, 4, 4, 4, 1, 4, 4, 4, 4],
|
364
|
+
[5, 5, 5, 5, 7, 7, 6, 5, 5],
|
365
|
+
[6, 6, 6, 6, 7, 7, 6, 6, 6],
|
366
|
+
[7, 7, 7, 7, 7, 7, 7, 7, 7],
|
367
|
+
[8, 8, 8, 8, 8, 8, 8, 8, 8]],
|
368
|
+
[[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
369
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
370
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
371
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
372
|
+
[0, 1, 1, 1, 4, 7, 7, 7, 8],
|
373
|
+
[0, 1, 1, 1, 4, 5, 6, 7, 8],
|
374
|
+
[0, 1, 2, 2, 4, 5, 6, 7, 8],
|
375
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
376
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8]]]
|
377
|
+
expected = xp.asarray(expected)
|
378
|
+
assert_array_almost_equal(ft, expected)
|
379
|
+
|
380
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_cdt")
|
381
|
+
@pytest.mark.parametrize('dtype', types)
|
382
|
+
def test_distance_transform_cdt02(self, dtype, xp):
|
383
|
+
dtype = getattr(xp, dtype)
|
384
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
385
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
386
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
387
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
388
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
389
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
390
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
391
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
392
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
393
|
+
out, ft = ndimage.distance_transform_cdt(data, 'chessboard',
|
394
|
+
return_indices=True)
|
395
|
+
bf = ndimage.distance_transform_bf(data, 'chessboard')
|
396
|
+
assert_array_almost_equal(bf, out)
|
397
|
+
|
398
|
+
expected = [[[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
399
|
+
[1, 1, 1, 1, 1, 1, 1, 1, 1],
|
400
|
+
[2, 2, 2, 1, 1, 1, 2, 2, 2],
|
401
|
+
[3, 3, 2, 2, 1, 2, 2, 3, 3],
|
402
|
+
[4, 4, 3, 2, 2, 2, 3, 4, 4],
|
403
|
+
[5, 5, 4, 6, 7, 6, 4, 5, 5],
|
404
|
+
[6, 6, 6, 6, 7, 7, 6, 6, 6],
|
405
|
+
[7, 7, 7, 7, 7, 7, 7, 7, 7],
|
406
|
+
[8, 8, 8, 8, 8, 8, 8, 8, 8]],
|
407
|
+
[[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
408
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
409
|
+
[0, 1, 2, 2, 3, 4, 6, 7, 8],
|
410
|
+
[0, 1, 1, 2, 2, 6, 6, 7, 8],
|
411
|
+
[0, 1, 1, 1, 2, 6, 7, 7, 8],
|
412
|
+
[0, 1, 1, 2, 6, 6, 7, 7, 8],
|
413
|
+
[0, 1, 2, 2, 5, 6, 6, 7, 8],
|
414
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8],
|
415
|
+
[0, 1, 2, 3, 4, 5, 6, 7, 8]]]
|
416
|
+
expected = xp.asarray(expected)
|
417
|
+
assert_array_almost_equal(ft, expected)
|
418
|
+
|
419
|
+
@skip_xp_backends(
|
420
|
+
np_only=True, reason='inplace indices= arrays are numpy-specific'
|
421
|
+
)
|
422
|
+
@pytest.mark.parametrize('dtype', types)
|
423
|
+
def test_distance_transform_cdt03(self, dtype, xp):
|
424
|
+
dtype = getattr(xp, dtype)
|
425
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
426
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
427
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
428
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
429
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
430
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
431
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
432
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
433
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
434
|
+
tdt, tft = ndimage.distance_transform_cdt(data, return_indices=True)
|
435
|
+
dts = []
|
436
|
+
fts = []
|
437
|
+
dt = xp.zeros(data.shape, dtype=xp.int32)
|
438
|
+
ndimage.distance_transform_cdt(data, distances=dt)
|
439
|
+
dts.append(dt)
|
440
|
+
ft = ndimage.distance_transform_cdt(
|
441
|
+
data, return_distances=False, return_indices=True)
|
442
|
+
fts.append(ft)
|
443
|
+
ft = xp.asarray(np.indices(data.shape, dtype=np.int32))
|
444
|
+
ndimage.distance_transform_cdt(
|
445
|
+
data, return_distances=False, return_indices=True, indices=ft)
|
446
|
+
fts.append(ft)
|
447
|
+
dt, ft = ndimage.distance_transform_cdt(
|
448
|
+
data, return_indices=True)
|
449
|
+
dts.append(dt)
|
450
|
+
fts.append(ft)
|
451
|
+
dt = xp.zeros(data.shape, dtype=xp.int32)
|
452
|
+
ft = ndimage.distance_transform_cdt(
|
453
|
+
data, distances=dt, return_indices=True)
|
454
|
+
dts.append(dt)
|
455
|
+
fts.append(ft)
|
456
|
+
ft = xp.asarray(np.indices(data.shape, dtype=np.int32))
|
457
|
+
dt = ndimage.distance_transform_cdt(
|
458
|
+
data, return_indices=True, indices=ft)
|
459
|
+
dts.append(dt)
|
460
|
+
fts.append(ft)
|
461
|
+
dt = xp.zeros(data.shape, dtype=xp.int32)
|
462
|
+
ft = xp.asarray(np.indices(data.shape, dtype=np.int32))
|
463
|
+
ndimage.distance_transform_cdt(data, distances=dt,
|
464
|
+
return_indices=True, indices=ft)
|
465
|
+
dts.append(dt)
|
466
|
+
fts.append(ft)
|
467
|
+
for dt in dts:
|
468
|
+
assert_array_almost_equal(tdt, dt)
|
469
|
+
for ft in fts:
|
470
|
+
assert_array_almost_equal(tft, ft)
|
471
|
+
|
472
|
+
@skip_xp_backends(
|
473
|
+
np_only=True, reason='XXX: does not raise unless indices is a numpy array'
|
474
|
+
)
|
475
|
+
def test_distance_transform_cdt04(self, xp):
|
476
|
+
# test input validation per discussion on PR #13302
|
477
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
478
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
479
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
480
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
481
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
482
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
483
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
484
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
485
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]])
|
486
|
+
indices_out = xp.zeros((data.ndim,) + data.shape, dtype=xp.int32)
|
487
|
+
with assert_raises(RuntimeError):
|
488
|
+
ndimage.distance_transform_bf(
|
489
|
+
data,
|
490
|
+
return_distances=True,
|
491
|
+
return_indices=False,
|
492
|
+
indices=indices_out
|
493
|
+
)
|
494
|
+
|
495
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_cdt")
|
496
|
+
@xfail_xp_backends("torch", reason="int overflow")
|
497
|
+
@pytest.mark.parametrize('dtype', types)
|
498
|
+
def test_distance_transform_cdt05(self, dtype, xp):
|
499
|
+
dtype = getattr(xp, dtype)
|
500
|
+
|
501
|
+
# test custom metric type per discussion on issue #17381
|
502
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
503
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
504
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
505
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
506
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
507
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
508
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
509
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
510
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
511
|
+
metric_arg = xp.ones((3, 3))
|
512
|
+
actual = ndimage.distance_transform_cdt(data, metric=metric_arg)
|
513
|
+
assert xp.sum(actual) == -21
|
514
|
+
|
515
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_bf")
|
516
|
+
@pytest.mark.parametrize('dtype', types)
|
517
|
+
def test_distance_transform_edt01(self, dtype, xp):
|
518
|
+
dtype = getattr(xp, dtype)
|
519
|
+
|
520
|
+
# euclidean distance transform (edt)
|
521
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
522
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
523
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
524
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
525
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
526
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
527
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
528
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
529
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
530
|
+
out, ft = ndimage.distance_transform_edt(data, return_indices=True)
|
531
|
+
bf = ndimage.distance_transform_bf(data, 'euclidean')
|
532
|
+
assert_array_almost_equal(bf, out)
|
533
|
+
|
534
|
+
# np-specific check
|
535
|
+
np_ft = np.asarray(ft)
|
536
|
+
dt = np_ft - np.indices(np_ft.shape[1:], dtype=np_ft.dtype)
|
537
|
+
dt = dt.astype(np.float64)
|
538
|
+
np.multiply(dt, dt, dt)
|
539
|
+
dt = np.add.reduce(dt, axis=0)
|
540
|
+
np.sqrt(dt, dt)
|
541
|
+
|
542
|
+
dt = xp.asarray(dt)
|
543
|
+
assert_array_almost_equal(bf, dt)
|
544
|
+
|
545
|
+
@skip_xp_backends(
|
546
|
+
np_only=True, reason='inplace distances= are numpy-specific'
|
547
|
+
)
|
548
|
+
@pytest.mark.parametrize('dtype', types)
|
549
|
+
def test_distance_transform_edt02(self, dtype, xp):
|
550
|
+
dtype = getattr(xp, dtype)
|
551
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
552
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
553
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
554
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
555
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
556
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
557
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
558
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
559
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
560
|
+
tdt, tft = ndimage.distance_transform_edt(data, return_indices=True)
|
561
|
+
dts = []
|
562
|
+
fts = []
|
563
|
+
|
564
|
+
dt = xp.zeros(data.shape, dtype=xp.float64)
|
565
|
+
ndimage.distance_transform_edt(data, distances=dt)
|
566
|
+
dts.append(dt)
|
567
|
+
|
568
|
+
ft = ndimage.distance_transform_edt(
|
569
|
+
data, return_distances=0, return_indices=True)
|
570
|
+
fts.append(ft)
|
571
|
+
|
572
|
+
ft = np.indices(data.shape, dtype=xp.int32)
|
573
|
+
ft = xp.asarray(ft)
|
574
|
+
ndimage.distance_transform_edt(
|
575
|
+
data, return_distances=False, return_indices=True, indices=ft)
|
576
|
+
fts.append(ft)
|
577
|
+
|
578
|
+
dt, ft = ndimage.distance_transform_edt(
|
579
|
+
data, return_indices=True)
|
580
|
+
dts.append(dt)
|
581
|
+
fts.append(ft)
|
582
|
+
|
583
|
+
dt = xp.zeros(data.shape, dtype=xp.float64)
|
584
|
+
ft = ndimage.distance_transform_edt(
|
585
|
+
data, distances=dt, return_indices=True)
|
586
|
+
dts.append(dt)
|
587
|
+
fts.append(ft)
|
588
|
+
|
589
|
+
ft = np.indices(data.shape, dtype=xp.int32)
|
590
|
+
ft = xp.asarray(ft)
|
591
|
+
dt = ndimage.distance_transform_edt(
|
592
|
+
data, return_indices=True, indices=ft)
|
593
|
+
dts.append(dt)
|
594
|
+
fts.append(ft)
|
595
|
+
|
596
|
+
dt = xp.zeros(data.shape, dtype=xp.float64)
|
597
|
+
ft = np.indices(data.shape, dtype=xp.int32)
|
598
|
+
ft = xp.asarray(ft)
|
599
|
+
ndimage.distance_transform_edt(
|
600
|
+
data, distances=dt, return_indices=True, indices=ft)
|
601
|
+
dts.append(dt)
|
602
|
+
fts.append(ft)
|
603
|
+
|
604
|
+
for dt in dts:
|
605
|
+
assert_array_almost_equal(tdt, dt)
|
606
|
+
for ft in fts:
|
607
|
+
assert_array_almost_equal(tft, ft)
|
608
|
+
|
609
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_bf")
|
610
|
+
@pytest.mark.parametrize('dtype', types)
|
611
|
+
def test_distance_transform_edt03(self, dtype, xp):
|
612
|
+
dtype = getattr(xp, dtype)
|
613
|
+
|
614
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
615
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
616
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
617
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
618
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
619
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
620
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
621
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
622
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
623
|
+
ref = ndimage.distance_transform_bf(data, 'euclidean', sampling=[2, 2])
|
624
|
+
out = ndimage.distance_transform_edt(data, sampling=[2, 2])
|
625
|
+
assert_array_almost_equal(out, ref)
|
626
|
+
|
627
|
+
@xfail_xp_backends("cupy", reason="CuPy does not have distance_transform_bf")
|
628
|
+
@pytest.mark.parametrize('dtype', types)
|
629
|
+
def test_distance_transform_edt4(self, dtype, xp):
|
630
|
+
dtype = getattr(xp, dtype)
|
631
|
+
|
632
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
633
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
634
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
635
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
636
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
637
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
638
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
639
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
640
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
641
|
+
ref = ndimage.distance_transform_bf(data, 'euclidean', sampling=[2, 1])
|
642
|
+
out = ndimage.distance_transform_edt(data, sampling=[2, 1])
|
643
|
+
assert_array_almost_equal(out, ref)
|
644
|
+
|
645
|
+
@xfail_xp_backends(
|
646
|
+
"cupy", reason="Only 2D and 3D distance transforms are supported in CuPy"
|
647
|
+
)
|
648
|
+
def test_distance_transform_edt5(self, xp):
|
649
|
+
# Ticket #954 regression test
|
650
|
+
out = ndimage.distance_transform_edt(xp.asarray(False))
|
651
|
+
assert_array_almost_equal(out, xp.asarray([0.]))
|
652
|
+
|
653
|
+
@xfail_xp_backends(
|
654
|
+
np_only=True, reason='XXX: does not raise unless indices is a numpy array'
|
655
|
+
)
|
656
|
+
def test_distance_transform_edt6(self, xp):
|
657
|
+
# test input validation per discussion on PR #13302
|
658
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
659
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
660
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
661
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
662
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
663
|
+
[0, 0, 1, 1, 1, 1, 1, 0, 0],
|
664
|
+
[0, 0, 0, 1, 1, 1, 0, 0, 0],
|
665
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0],
|
666
|
+
[0, 0, 0, 0, 0, 0, 0, 0, 0]])
|
667
|
+
distances_out = xp.zeros(data.shape, dtype=xp.float64)
|
668
|
+
with assert_raises(RuntimeError):
|
669
|
+
ndimage.distance_transform_bf(
|
670
|
+
data,
|
671
|
+
return_indices=True,
|
672
|
+
return_distances=False,
|
673
|
+
distances=distances_out
|
674
|
+
)
|
675
|
+
|
676
|
+
@skip_xp_backends(np_only=True,
|
677
|
+
reason="generate_binary_structure always generates numpy objects")
|
678
|
+
def test_generate_structure01(self, xp):
|
679
|
+
struct = ndimage.generate_binary_structure(0, 1)
|
680
|
+
assert struct == 1
|
681
|
+
|
682
|
+
@skip_xp_backends(np_only=True,
|
683
|
+
reason="generate_binary_structure always generates numpy objects")
|
684
|
+
def test_generate_structure02(self, xp):
|
685
|
+
struct = ndimage.generate_binary_structure(1, 1)
|
686
|
+
assert_array_almost_equal(struct, [1, 1, 1])
|
687
|
+
|
688
|
+
@skip_xp_backends(np_only=True,
|
689
|
+
reason="generate_binary_structure always generates numpy objects")
|
690
|
+
def test_generate_structure03(self, xp):
|
691
|
+
struct = ndimage.generate_binary_structure(2, 1)
|
692
|
+
assert_array_almost_equal(struct, [[0, 1, 0],
|
693
|
+
[1, 1, 1],
|
694
|
+
[0, 1, 0]])
|
695
|
+
|
696
|
+
@skip_xp_backends(np_only=True,
|
697
|
+
reason="generate_binary_structure always generates numpy objects")
|
698
|
+
def test_generate_structure04(self, xp):
|
699
|
+
struct = ndimage.generate_binary_structure(2, 2)
|
700
|
+
assert_array_almost_equal(struct, [[1, 1, 1],
|
701
|
+
[1, 1, 1],
|
702
|
+
[1, 1, 1]])
|
703
|
+
|
704
|
+
def test_iterate_structure01(self, xp):
|
705
|
+
struct = [[0, 1, 0],
|
706
|
+
[1, 1, 1],
|
707
|
+
[0, 1, 0]]
|
708
|
+
struct = xp.asarray(struct)
|
709
|
+
out = ndimage.iterate_structure(struct, 2)
|
710
|
+
expected = np.asarray([[0, 0, 1, 0, 0],
|
711
|
+
[0, 1, 1, 1, 0],
|
712
|
+
[1, 1, 1, 1, 1],
|
713
|
+
[0, 1, 1, 1, 0],
|
714
|
+
[0, 0, 1, 0, 0]], dtype=bool)
|
715
|
+
expected = xp.asarray(expected)
|
716
|
+
assert_array_almost_equal(out, expected)
|
717
|
+
|
718
|
+
def test_iterate_structure02(self, xp):
|
719
|
+
struct = [[0, 1],
|
720
|
+
[1, 1],
|
721
|
+
[0, 1]]
|
722
|
+
struct = xp.asarray(struct)
|
723
|
+
out = ndimage.iterate_structure(struct, 2)
|
724
|
+
expected = np.asarray([[0, 0, 1],
|
725
|
+
[0, 1, 1],
|
726
|
+
[1, 1, 1],
|
727
|
+
[0, 1, 1],
|
728
|
+
[0, 0, 1]], dtype=bool)
|
729
|
+
expected = xp.asarray(expected)
|
730
|
+
|
731
|
+
assert_array_almost_equal(out, expected)
|
732
|
+
|
733
|
+
def test_iterate_structure03(self, xp):
|
734
|
+
struct = [[0, 1, 0],
|
735
|
+
[1, 1, 1],
|
736
|
+
[0, 1, 0]]
|
737
|
+
struct = xp.asarray(struct)
|
738
|
+
out = ndimage.iterate_structure(struct, 2, 1)
|
739
|
+
expected = [[0, 0, 1, 0, 0],
|
740
|
+
[0, 1, 1, 1, 0],
|
741
|
+
[1, 1, 1, 1, 1],
|
742
|
+
[0, 1, 1, 1, 0],
|
743
|
+
[0, 0, 1, 0, 0]]
|
744
|
+
expected = np.asarray(expected, dtype=bool)
|
745
|
+
expected = xp.asarray(expected)
|
746
|
+
assert_array_almost_equal(out[0], expected)
|
747
|
+
assert out[1] == [2, 2]
|
748
|
+
|
749
|
+
@pytest.mark.parametrize('dtype', types)
|
750
|
+
def test_binary_erosion01(self, dtype, xp):
|
751
|
+
dtype = getattr(xp, dtype)
|
752
|
+
data = xp.ones([], dtype=dtype)
|
753
|
+
out = ndimage.binary_erosion(data)
|
754
|
+
assert out == xp.asarray(1, dtype=out.dtype)
|
755
|
+
|
756
|
+
@pytest.mark.parametrize('dtype', types)
|
757
|
+
def test_binary_erosion02(self, dtype, xp):
|
758
|
+
dtype = getattr(xp, dtype)
|
759
|
+
data = xp.ones([], dtype=dtype)
|
760
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
761
|
+
assert out == xp.asarray(1, dtype=out.dtype)
|
762
|
+
|
763
|
+
@pytest.mark.parametrize('dtype', types)
|
764
|
+
def test_binary_erosion03(self, dtype, xp):
|
765
|
+
dtype = getattr(xp, dtype)
|
766
|
+
data = xp.ones([1], dtype=dtype)
|
767
|
+
out = ndimage.binary_erosion(data)
|
768
|
+
assert_array_almost_equal(out, xp.asarray([0]))
|
769
|
+
|
770
|
+
@pytest.mark.parametrize('dtype', types)
|
771
|
+
def test_binary_erosion04(self, dtype, xp):
|
772
|
+
dtype = getattr(xp, dtype)
|
773
|
+
data = xp.ones([1], dtype=dtype)
|
774
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
775
|
+
assert_array_almost_equal(out, xp.asarray([1]))
|
776
|
+
|
777
|
+
@pytest.mark.parametrize('dtype', types)
|
778
|
+
def test_binary_erosion05(self, dtype, xp):
|
779
|
+
dtype = getattr(xp, dtype)
|
780
|
+
data = xp.ones([3], dtype=dtype)
|
781
|
+
out = ndimage.binary_erosion(data)
|
782
|
+
assert_array_almost_equal(out, xp.asarray([0, 1, 0]))
|
783
|
+
|
784
|
+
@pytest.mark.parametrize('dtype', types)
|
785
|
+
@xfail_xp_backends("cupy", reason="https://github.com/cupy/cupy/issues/8912")
|
786
|
+
def test_binary_erosion05_broadcasted(self, dtype, xp):
|
787
|
+
dtype = getattr(xp, dtype)
|
788
|
+
data = xp.ones((1, ), dtype=dtype)
|
789
|
+
data = xp.broadcast_to(data, (3, ))
|
790
|
+
out = ndimage.binary_erosion(data)
|
791
|
+
assert_array_almost_equal(out, xp.asarray([0, 1, 0]))
|
792
|
+
|
793
|
+
@pytest.mark.parametrize('dtype', types)
|
794
|
+
def test_binary_erosion06(self, dtype, xp):
|
795
|
+
dtype = getattr(xp, dtype)
|
796
|
+
data = xp.ones([3], dtype=dtype)
|
797
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
798
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1]))
|
799
|
+
|
800
|
+
@pytest.mark.parametrize('dtype', types)
|
801
|
+
def test_binary_erosion07(self, dtype, xp):
|
802
|
+
dtype = getattr(xp, dtype)
|
803
|
+
data = xp.ones([5], dtype=dtype)
|
804
|
+
out = ndimage.binary_erosion(data)
|
805
|
+
assert_array_almost_equal(out, xp.asarray([0, 1, 1, 1, 0]))
|
806
|
+
|
807
|
+
@pytest.mark.parametrize('dtype', types)
|
808
|
+
def test_binary_erosion08(self, dtype, xp):
|
809
|
+
dtype = getattr(xp, dtype)
|
810
|
+
data = xp.ones([5], dtype=dtype)
|
811
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
812
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1, 1, 1]))
|
813
|
+
|
814
|
+
@pytest.mark.parametrize('dtype', types)
|
815
|
+
def test_binary_erosion09(self, dtype, xp):
|
816
|
+
data = np.ones([5], dtype=dtype)
|
817
|
+
data[2] = 0
|
818
|
+
data = xp.asarray(data)
|
819
|
+
out = ndimage.binary_erosion(data)
|
820
|
+
assert_array_almost_equal(out, xp.asarray([0, 0, 0, 0, 0]))
|
821
|
+
|
822
|
+
@pytest.mark.parametrize('dtype', types)
|
823
|
+
def test_binary_erosion10(self, dtype, xp):
|
824
|
+
data = np.ones([5], dtype=dtype)
|
825
|
+
data[2] = 0
|
826
|
+
data = xp.asarray(data)
|
827
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
828
|
+
assert_array_almost_equal(out, xp.asarray([1, 0, 0, 0, 1]))
|
829
|
+
|
830
|
+
@pytest.mark.parametrize('dtype', types)
|
831
|
+
def test_binary_erosion11(self, dtype, xp):
|
832
|
+
data = np.ones([5], dtype=dtype)
|
833
|
+
data[2] = 0
|
834
|
+
data = xp.asarray(data)
|
835
|
+
struct = xp.asarray([1, 0, 1])
|
836
|
+
out = ndimage.binary_erosion(data, struct, border_value=1)
|
837
|
+
assert_array_almost_equal(out, xp.asarray([1, 0, 1, 0, 1]))
|
838
|
+
|
839
|
+
@pytest.mark.parametrize('dtype', types)
|
840
|
+
def test_binary_erosion12(self, dtype, xp):
|
841
|
+
data = np.ones([5], dtype=dtype)
|
842
|
+
data[2] = 0
|
843
|
+
data = xp.asarray(data)
|
844
|
+
struct = xp.asarray([1, 0, 1])
|
845
|
+
out = ndimage.binary_erosion(data, struct, border_value=1, origin=-1)
|
846
|
+
assert_array_almost_equal(out, xp.asarray([0, 1, 0, 1, 1]))
|
847
|
+
|
848
|
+
@pytest.mark.parametrize('dtype', types)
|
849
|
+
def test_binary_erosion13(self, dtype, xp):
|
850
|
+
data = np.ones([5], dtype=dtype)
|
851
|
+
data[2] = 0
|
852
|
+
data = xp.asarray(data)
|
853
|
+
struct = xp.asarray([1, 0, 1])
|
854
|
+
out = ndimage.binary_erosion(data, struct, border_value=1, origin=1)
|
855
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 0, 1, 0]))
|
856
|
+
|
857
|
+
@pytest.mark.parametrize('dtype', types)
|
858
|
+
def test_binary_erosion14(self, dtype, xp):
|
859
|
+
data = np.ones([5], dtype=dtype)
|
860
|
+
data[2] = 0
|
861
|
+
data = xp.asarray(data)
|
862
|
+
struct = xp.asarray([1, 1])
|
863
|
+
out = ndimage.binary_erosion(data, struct, border_value=1)
|
864
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 0, 0, 1]))
|
865
|
+
|
866
|
+
@pytest.mark.parametrize('dtype', types)
|
867
|
+
def test_binary_erosion15(self, dtype, xp):
|
868
|
+
data = np.ones([5], dtype=dtype)
|
869
|
+
data[2] = 0
|
870
|
+
data = xp.asarray(data)
|
871
|
+
struct = xp.asarray([1, 1])
|
872
|
+
out = ndimage.binary_erosion(data, struct, border_value=1, origin=-1)
|
873
|
+
assert_array_almost_equal(out, xp.asarray([1, 0, 0, 1, 1]))
|
874
|
+
|
875
|
+
@pytest.mark.parametrize('dtype', types)
|
876
|
+
def test_binary_erosion16(self, dtype, xp):
|
877
|
+
dtype = getattr(xp, dtype)
|
878
|
+
data = xp.ones([1, 1], dtype=dtype)
|
879
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
880
|
+
assert_array_almost_equal(out, xp.asarray([[1]]))
|
881
|
+
|
882
|
+
@pytest.mark.parametrize('dtype', types)
|
883
|
+
def test_binary_erosion17(self, dtype, xp):
|
884
|
+
dtype = getattr(xp, dtype)
|
885
|
+
data = xp.ones([1, 1], dtype=dtype)
|
886
|
+
out = ndimage.binary_erosion(data)
|
887
|
+
assert_array_almost_equal(out, xp.asarray([[0]]))
|
888
|
+
|
889
|
+
@pytest.mark.parametrize('dtype', types)
|
890
|
+
def test_binary_erosion18(self, dtype, xp):
|
891
|
+
dtype = getattr(xp, dtype)
|
892
|
+
data = xp.ones([1, 3], dtype=dtype)
|
893
|
+
out = ndimage.binary_erosion(data)
|
894
|
+
assert_array_almost_equal(out, xp.asarray([[0, 0, 0]]))
|
895
|
+
|
896
|
+
@pytest.mark.parametrize('dtype', types)
|
897
|
+
def test_binary_erosion19(self, dtype, xp):
|
898
|
+
dtype = getattr(xp, dtype)
|
899
|
+
data = xp.ones([1, 3], dtype=dtype)
|
900
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
901
|
+
assert_array_almost_equal(out, xp.asarray([[1, 1, 1]]))
|
902
|
+
|
903
|
+
@pytest.mark.parametrize('dtype', types)
|
904
|
+
def test_binary_erosion20(self, dtype, xp):
|
905
|
+
dtype = getattr(xp, dtype)
|
906
|
+
data = xp.ones([3, 3], dtype=dtype)
|
907
|
+
out = ndimage.binary_erosion(data)
|
908
|
+
assert_array_almost_equal(out, xp.asarray([[0, 0, 0],
|
909
|
+
[0, 1, 0],
|
910
|
+
[0, 0, 0]]))
|
911
|
+
|
912
|
+
@pytest.mark.parametrize('dtype', types)
|
913
|
+
def test_binary_erosion21(self, dtype, xp):
|
914
|
+
dtype = getattr(xp, dtype)
|
915
|
+
data = xp.ones([3, 3], dtype=dtype)
|
916
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
917
|
+
assert_array_almost_equal(out, xp.asarray([[1, 1, 1],
|
918
|
+
[1, 1, 1],
|
919
|
+
[1, 1, 1]]))
|
920
|
+
|
921
|
+
@pytest.mark.parametrize('dtype', types)
|
922
|
+
def test_binary_erosion22(self, dtype, xp):
|
923
|
+
dtype = getattr(xp, dtype)
|
924
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
925
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
926
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
927
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
928
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
929
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
930
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
931
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
932
|
+
expected = xp.asarray(expected)
|
933
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
934
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
935
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
936
|
+
[0, 0, 1, 1, 1, 1, 1, 1],
|
937
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
938
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
939
|
+
[0, 1, 1, 0, 0, 1, 1, 0],
|
940
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
941
|
+
out = ndimage.binary_erosion(data, border_value=1)
|
942
|
+
assert_array_almost_equal(out, expected)
|
943
|
+
|
944
|
+
@pytest.mark.parametrize('dtype', types)
|
945
|
+
def test_binary_erosion23(self, dtype, xp):
|
946
|
+
dtype = getattr(xp, dtype)
|
947
|
+
struct = ndimage.generate_binary_structure(2, 2)
|
948
|
+
struct = xp.asarray(struct)
|
949
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
950
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
951
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
952
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
953
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
954
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
955
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
956
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
957
|
+
expected = xp.asarray(expected)
|
958
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
959
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
960
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
961
|
+
[0, 0, 1, 1, 1, 1, 1, 1],
|
962
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
963
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
964
|
+
[0, 1, 1, 0, 0, 1, 1, 0],
|
965
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
966
|
+
out = ndimage.binary_erosion(data, struct, border_value=1)
|
967
|
+
assert_array_almost_equal(out, expected)
|
968
|
+
|
969
|
+
@pytest.mark.parametrize('dtype', types)
|
970
|
+
def test_binary_erosion24(self, dtype, xp):
|
971
|
+
dtype = getattr(xp, dtype)
|
972
|
+
struct = xp.asarray([[0, 1],
|
973
|
+
[1, 1]])
|
974
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
975
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
976
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
977
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
978
|
+
[0, 0, 0, 1, 1, 1, 0, 0],
|
979
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
980
|
+
[0, 0, 1, 0, 0, 0, 1, 0],
|
981
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
982
|
+
expected = xp.asarray(expected)
|
983
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
984
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
985
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
986
|
+
[0, 0, 1, 1, 1, 1, 1, 1],
|
987
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
988
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
989
|
+
[0, 1, 1, 0, 0, 1, 1, 0],
|
990
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
991
|
+
out = ndimage.binary_erosion(data, struct, border_value=1)
|
992
|
+
assert_array_almost_equal(out, expected)
|
993
|
+
|
994
|
+
@pytest.mark.parametrize('dtype', types)
|
995
|
+
def test_binary_erosion25(self, dtype, xp):
|
996
|
+
dtype = getattr(xp, dtype)
|
997
|
+
struct = [[0, 1, 0],
|
998
|
+
[1, 0, 1],
|
999
|
+
[0, 1, 0]]
|
1000
|
+
struct = xp.asarray(struct)
|
1001
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
1002
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1003
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1004
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1005
|
+
[0, 0, 0, 1, 0, 0, 0, 0],
|
1006
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1007
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1008
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1009
|
+
expected = xp.asarray(expected)
|
1010
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1011
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1012
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
1013
|
+
[0, 0, 1, 1, 1, 0, 1, 1],
|
1014
|
+
[0, 0, 1, 0, 1, 1, 0, 0],
|
1015
|
+
[0, 1, 0, 1, 1, 1, 1, 0],
|
1016
|
+
[0, 1, 1, 0, 0, 1, 1, 0],
|
1017
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1018
|
+
out = ndimage.binary_erosion(data, struct, border_value=1)
|
1019
|
+
assert_array_almost_equal(out, expected)
|
1020
|
+
|
1021
|
+
@pytest.mark.parametrize('dtype', types)
|
1022
|
+
def test_binary_erosion26(self, dtype, xp):
|
1023
|
+
dtype = getattr(xp, dtype)
|
1024
|
+
struct = [[0, 1, 0],
|
1025
|
+
[1, 0, 1],
|
1026
|
+
[0, 1, 0]]
|
1027
|
+
struct = xp.asarray(struct)
|
1028
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
1029
|
+
[0, 0, 0, 0, 0, 0, 0, 1],
|
1030
|
+
[0, 0, 0, 0, 1, 0, 0, 1],
|
1031
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
1032
|
+
[0, 1, 0, 0, 1, 0, 0, 0],
|
1033
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1034
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1035
|
+
[0, 0, 0, 0, 0, 0, 0, 1]]
|
1036
|
+
expected = xp.asarray(expected)
|
1037
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1038
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1039
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
1040
|
+
[0, 0, 1, 1, 1, 0, 1, 1],
|
1041
|
+
[0, 0, 1, 0, 1, 1, 0, 0],
|
1042
|
+
[0, 1, 0, 1, 1, 1, 1, 0],
|
1043
|
+
[0, 1, 1, 0, 0, 1, 1, 0],
|
1044
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1045
|
+
out = ndimage.binary_erosion(data, struct, border_value=1,
|
1046
|
+
origin=(-1, -1))
|
1047
|
+
assert_array_almost_equal(out, expected)
|
1048
|
+
|
1049
|
+
@xfail_xp_backends(
|
1050
|
+
"cupy", reason="CuPy: NotImplementedError: only brute_force iteration"
|
1051
|
+
)
|
1052
|
+
def test_binary_erosion27(self, xp):
|
1053
|
+
struct = [[0, 1, 0],
|
1054
|
+
[1, 1, 1],
|
1055
|
+
[0, 1, 0]]
|
1056
|
+
struct = xp.asarray(struct)
|
1057
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1058
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1059
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1060
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1061
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1062
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1063
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1064
|
+
expected = xp.asarray(expected)
|
1065
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0],
|
1066
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1067
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1068
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1069
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1070
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1071
|
+
[0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1072
|
+
data = xp.asarray(data)
|
1073
|
+
out = ndimage.binary_erosion(data, struct, border_value=1,
|
1074
|
+
iterations=2)
|
1075
|
+
assert_array_almost_equal(out, expected)
|
1076
|
+
|
1077
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1078
|
+
reason='inplace out= arguments are numpy-specific')
|
1079
|
+
@xfail_xp_backends("cupy",
|
1080
|
+
reason="NotImplementedError: only brute_force iteration")
|
1081
|
+
def test_binary_erosion28(self, xp):
|
1082
|
+
struct = [[0, 1, 0],
|
1083
|
+
[1, 1, 1],
|
1084
|
+
[0, 1, 0]]
|
1085
|
+
struct = xp.asarray(struct)
|
1086
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1087
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1088
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1089
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1090
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1091
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1092
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1093
|
+
expected = np.asarray(expected, dtype=bool)
|
1094
|
+
expected = xp.asarray(expected)
|
1095
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0],
|
1096
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1097
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1098
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1099
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1100
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1101
|
+
[0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1102
|
+
data = xp.asarray(data)
|
1103
|
+
out = np.zeros(data.shape, dtype=bool)
|
1104
|
+
out = xp.asarray(out)
|
1105
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1106
|
+
iterations=2, output=out)
|
1107
|
+
assert_array_almost_equal(out, expected)
|
1108
|
+
|
1109
|
+
@xfail_xp_backends(
|
1110
|
+
"cupy", reason="CuPy: NotImplementedError: only brute_force iteration"
|
1111
|
+
)
|
1112
|
+
def test_binary_erosion29(self, xp):
|
1113
|
+
struct = [[0, 1, 0],
|
1114
|
+
[1, 1, 1],
|
1115
|
+
[0, 1, 0]]
|
1116
|
+
struct = xp.asarray(struct)
|
1117
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1118
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1119
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1120
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1121
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1122
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1123
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1124
|
+
expected = xp.asarray(expected)
|
1125
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
1126
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1127
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1128
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1129
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1130
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1131
|
+
[0, 0, 0, 1, 0, 0, 0]], dtype=bool)
|
1132
|
+
data = xp.asarray(data)
|
1133
|
+
out = ndimage.binary_erosion(data, struct,
|
1134
|
+
border_value=1, iterations=3)
|
1135
|
+
assert_array_almost_equal(out, expected)
|
1136
|
+
|
1137
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1138
|
+
reason='inplace out= arguments are numpy-specific')
|
1139
|
+
@xfail_xp_backends("cupy",
|
1140
|
+
reason="NotImplementedError: only brute_force iteration")
|
1141
|
+
def test_binary_erosion30(self, xp):
|
1142
|
+
struct = [[0, 1, 0],
|
1143
|
+
[1, 1, 1],
|
1144
|
+
[0, 1, 0]]
|
1145
|
+
struct = xp.asarray(struct)
|
1146
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1147
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1148
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1149
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1150
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1151
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1152
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1153
|
+
expected = np.asarray(expected, dtype=bool)
|
1154
|
+
expected = xp.asarray(expected)
|
1155
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
1156
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1157
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1158
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1159
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1160
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1161
|
+
[0, 0, 0, 1, 0, 0, 0]], dtype=bool)
|
1162
|
+
data = xp.asarray(data)
|
1163
|
+
out = np.zeros(data.shape, dtype=bool)
|
1164
|
+
out = xp.asarray(out)
|
1165
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1166
|
+
iterations=3, output=out)
|
1167
|
+
assert_array_almost_equal(out, expected)
|
1168
|
+
|
1169
|
+
# test with output memory overlap
|
1170
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1171
|
+
iterations=3, output=data)
|
1172
|
+
assert_array_almost_equal(data, expected)
|
1173
|
+
|
1174
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1175
|
+
reason='inplace out= arguments are numpy-specific')
|
1176
|
+
def test_binary_erosion31(self, xp):
|
1177
|
+
struct = [[0, 1, 0],
|
1178
|
+
[1, 1, 1],
|
1179
|
+
[0, 1, 0]]
|
1180
|
+
struct = xp.asarray(struct)
|
1181
|
+
expected = [[0, 0, 1, 0, 0, 0, 0],
|
1182
|
+
[0, 1, 1, 1, 0, 0, 0],
|
1183
|
+
[1, 1, 1, 1, 1, 0, 1],
|
1184
|
+
[0, 1, 1, 1, 0, 0, 0],
|
1185
|
+
[0, 0, 1, 0, 0, 0, 0],
|
1186
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1187
|
+
[0, 0, 1, 0, 0, 0, 1]]
|
1188
|
+
expected = np.asarray(expected, dtype=bool)
|
1189
|
+
expected = xp.asarray(expected)
|
1190
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
1191
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1192
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1193
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1194
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1195
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1196
|
+
[0, 0, 0, 1, 0, 0, 0]], dtype=bool)
|
1197
|
+
data = xp.asarray(data)
|
1198
|
+
out = np.zeros(data.shape, dtype=bool)
|
1199
|
+
out = xp.asarray(out)
|
1200
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1201
|
+
iterations=1, output=out, origin=(-1, -1))
|
1202
|
+
assert_array_almost_equal(out, expected)
|
1203
|
+
|
1204
|
+
@xfail_xp_backends("cupy",
|
1205
|
+
reason="NotImplementedError: only brute_force iteration")
|
1206
|
+
def test_binary_erosion32(self, xp):
|
1207
|
+
struct = [[0, 1, 0],
|
1208
|
+
[1, 1, 1],
|
1209
|
+
[0, 1, 0]]
|
1210
|
+
struct = xp.asarray(struct)
|
1211
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1212
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1213
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1214
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1215
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1216
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1217
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1218
|
+
expected = xp.asarray(expected)
|
1219
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0],
|
1220
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1221
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1222
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1223
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1224
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1225
|
+
[0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1226
|
+
data = xp.asarray(data)
|
1227
|
+
out = ndimage.binary_erosion(data, struct,
|
1228
|
+
border_value=1, iterations=2)
|
1229
|
+
assert_array_almost_equal(out, expected)
|
1230
|
+
|
1231
|
+
@xfail_xp_backends("cupy",
|
1232
|
+
reason="NotImplementedError: only brute_force iteration")
|
1233
|
+
def test_binary_erosion33(self, xp):
|
1234
|
+
struct = [[0, 1, 0],
|
1235
|
+
[1, 1, 1],
|
1236
|
+
[0, 1, 0]]
|
1237
|
+
struct = xp.asarray(struct)
|
1238
|
+
expected = [[0, 0, 0, 0, 0, 1, 1],
|
1239
|
+
[0, 0, 0, 0, 0, 0, 1],
|
1240
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1241
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1242
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1243
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1244
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1245
|
+
expected = xp.asarray(expected)
|
1246
|
+
mask = [[1, 1, 1, 1, 1, 0, 0],
|
1247
|
+
[1, 1, 1, 1, 1, 1, 0],
|
1248
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1249
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1250
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1251
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1252
|
+
[1, 1, 1, 1, 1, 1, 1]]
|
1253
|
+
mask = xp.asarray(mask)
|
1254
|
+
data = np.asarray([[0, 0, 0, 0, 0, 1, 1],
|
1255
|
+
[0, 0, 0, 1, 0, 0, 1],
|
1256
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1257
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1258
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1259
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1260
|
+
[0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1261
|
+
data = xp.asarray(data)
|
1262
|
+
out = ndimage.binary_erosion(data, struct,
|
1263
|
+
border_value=1, mask=mask, iterations=-1)
|
1264
|
+
assert_array_almost_equal(out, expected)
|
1265
|
+
|
1266
|
+
def test_binary_erosion34(self, xp):
|
1267
|
+
struct = [[0, 1, 0],
|
1268
|
+
[1, 1, 1],
|
1269
|
+
[0, 1, 0]]
|
1270
|
+
struct = xp.asarray(struct)
|
1271
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1272
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1273
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1274
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1275
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1276
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1277
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1278
|
+
expected = xp.asarray(expected)
|
1279
|
+
mask = [[0, 0, 0, 0, 0, 0, 0],
|
1280
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1281
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1282
|
+
[0, 0, 1, 0, 1, 0, 0],
|
1283
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1284
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1285
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1286
|
+
mask = xp.asarray(mask)
|
1287
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0],
|
1288
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1289
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1290
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1291
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1292
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1293
|
+
[0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1294
|
+
data = xp.asarray(data)
|
1295
|
+
out = ndimage.binary_erosion(data, struct,
|
1296
|
+
border_value=1, mask=mask)
|
1297
|
+
assert_array_almost_equal(out, expected)
|
1298
|
+
|
1299
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1300
|
+
reason='inplace out= arguments are numpy-specific')
|
1301
|
+
def test_binary_erosion35(self, xp):
|
1302
|
+
struct = [[0, 1, 0],
|
1303
|
+
[1, 1, 1],
|
1304
|
+
[0, 1, 0]]
|
1305
|
+
struct = xp.asarray(struct)
|
1306
|
+
mask = [[0, 0, 0, 0, 0, 0, 0],
|
1307
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1308
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1309
|
+
[0, 0, 1, 0, 1, 0, 0],
|
1310
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1311
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1312
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1313
|
+
mask = np.asarray(mask, dtype=bool)
|
1314
|
+
mask = xp.asarray(mask)
|
1315
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
1316
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1317
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1318
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1319
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1320
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1321
|
+
[0, 0, 0, 1, 0, 0, 0]], dtype=bool)
|
1322
|
+
data = xp.asarray(data)
|
1323
|
+
tmp = [[0, 0, 1, 0, 0, 0, 0],
|
1324
|
+
[0, 1, 1, 1, 0, 0, 0],
|
1325
|
+
[1, 1, 1, 1, 1, 0, 1],
|
1326
|
+
[0, 1, 1, 1, 0, 0, 0],
|
1327
|
+
[0, 0, 1, 0, 0, 0, 0],
|
1328
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1329
|
+
[0, 0, 1, 0, 0, 0, 1]]
|
1330
|
+
tmp = np.asarray(tmp, dtype=bool)
|
1331
|
+
tmp = xp.asarray(tmp)
|
1332
|
+
expected = xp.logical_and(tmp, mask)
|
1333
|
+
tmp = xp.logical_and(data, xp.logical_not(mask))
|
1334
|
+
expected = xp.logical_or(expected, tmp)
|
1335
|
+
out = np.zeros(data.shape, dtype=bool)
|
1336
|
+
out = xp.asarray(out)
|
1337
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1338
|
+
iterations=1, output=out,
|
1339
|
+
origin=(-1, -1), mask=mask)
|
1340
|
+
assert_array_almost_equal(out, expected)
|
1341
|
+
|
1342
|
+
@xfail_xp_backends("cupy",
|
1343
|
+
reason="NotImplementedError: only brute_force iteration")
|
1344
|
+
def test_binary_erosion36(self, xp):
|
1345
|
+
struct = [[0, 1, 0],
|
1346
|
+
[1, 0, 1],
|
1347
|
+
[0, 1, 0]]
|
1348
|
+
struct = xp.asarray(struct)
|
1349
|
+
mask = [[0, 0, 0, 0, 0, 0, 0, 0],
|
1350
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1351
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
1352
|
+
[0, 0, 1, 0, 1, 0, 0, 0],
|
1353
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
1354
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
1355
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
1356
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1357
|
+
mask = np.asarray(mask, dtype=bool)
|
1358
|
+
mask = xp.asarray(mask)
|
1359
|
+
tmp = [[0, 0, 0, 0, 0, 0, 0, 0],
|
1360
|
+
[0, 0, 0, 0, 0, 0, 0, 1],
|
1361
|
+
[0, 0, 0, 0, 1, 0, 0, 1],
|
1362
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
1363
|
+
[0, 1, 0, 0, 1, 0, 0, 0],
|
1364
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1365
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1366
|
+
[0, 0, 0, 0, 0, 0, 0, 1]]
|
1367
|
+
tmp = np.asarray(tmp, dtype=bool)
|
1368
|
+
tmp = xp.asarray(tmp)
|
1369
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1370
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1371
|
+
[0, 0, 0, 0, 0, 1, 1, 1],
|
1372
|
+
[0, 0, 1, 1, 1, 0, 1, 1],
|
1373
|
+
[0, 0, 1, 0, 1, 1, 0, 0],
|
1374
|
+
[0, 1, 0, 1, 1, 1, 1, 0],
|
1375
|
+
[0, 1, 1, 0, 0, 1, 1, 0],
|
1376
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1377
|
+
data = xp.asarray(data)
|
1378
|
+
expected = xp.logical_and(tmp, mask)
|
1379
|
+
tmp = xp.logical_and(data, xp.logical_not(mask))
|
1380
|
+
expected = xp.logical_or(expected, tmp)
|
1381
|
+
out = ndimage.binary_erosion(data, struct, mask=mask,
|
1382
|
+
border_value=1, origin=(-1, -1))
|
1383
|
+
assert_array_almost_equal(out, expected)
|
1384
|
+
|
1385
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1386
|
+
reason='inplace out= arguments are numpy-specific')
|
1387
|
+
@xfail_xp_backends("cupy",
|
1388
|
+
reason="NotImplementedError: only brute_force iteration")
|
1389
|
+
def test_binary_erosion37(self, xp):
|
1390
|
+
a = np.asarray([[1, 0, 1],
|
1391
|
+
[0, 1, 0],
|
1392
|
+
[1, 0, 1]], dtype=bool)
|
1393
|
+
a = xp.asarray(a)
|
1394
|
+
b = xp.zeros_like(a)
|
1395
|
+
out = ndimage.binary_erosion(a, structure=a, output=b, iterations=0,
|
1396
|
+
border_value=True, brute_force=True)
|
1397
|
+
assert out is b
|
1398
|
+
xp_assert_equal(
|
1399
|
+
ndimage.binary_erosion(a, structure=a, iterations=0,
|
1400
|
+
border_value=True),
|
1401
|
+
b)
|
1402
|
+
|
1403
|
+
def test_binary_erosion38(self, xp):
|
1404
|
+
data = np.asarray([[1, 0, 1],
|
1405
|
+
[0, 1, 0],
|
1406
|
+
[1, 0, 1]], dtype=bool)
|
1407
|
+
data = xp.asarray(data)
|
1408
|
+
iterations = 2.0
|
1409
|
+
with assert_raises(TypeError):
|
1410
|
+
_ = ndimage.binary_erosion(data, iterations=iterations)
|
1411
|
+
|
1412
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1413
|
+
reason='inplace out= arguments are numpy-specific')
|
1414
|
+
@xfail_xp_backends("cupy",
|
1415
|
+
reason="NotImplementedError: only brute_force iteration")
|
1416
|
+
def test_binary_erosion39(self, xp):
|
1417
|
+
iterations = np.int32(3)
|
1418
|
+
struct = [[0, 1, 0],
|
1419
|
+
[1, 1, 1],
|
1420
|
+
[0, 1, 0]]
|
1421
|
+
struct = xp.asarray(struct)
|
1422
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1423
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1424
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1425
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1426
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1427
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1428
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1429
|
+
expected = xp.asarray(expected, dtype=bool)
|
1430
|
+
expected = xp.asarray(expected)
|
1431
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
1432
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1433
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1434
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1435
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1436
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1437
|
+
[0, 0, 0, 1, 0, 0, 0]], dtype=bool)
|
1438
|
+
data = xp.asarray(data)
|
1439
|
+
out = np.zeros(data.shape, dtype=bool)
|
1440
|
+
out = xp.asarray(out)
|
1441
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1442
|
+
iterations=iterations, output=out)
|
1443
|
+
assert_array_almost_equal(out, expected)
|
1444
|
+
|
1445
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1446
|
+
reason='inplace out= arguments are numpy-specific')
|
1447
|
+
@xfail_xp_backends("cupy",
|
1448
|
+
reason="NotImplementedError: only brute_force iteration")
|
1449
|
+
def test_binary_erosion40(self, xp):
|
1450
|
+
iterations = np.int64(3)
|
1451
|
+
struct = [[0, 1, 0],
|
1452
|
+
[1, 1, 1],
|
1453
|
+
[0, 1, 0]]
|
1454
|
+
struct = xp.asarray(struct)
|
1455
|
+
expected = [[0, 0, 0, 0, 0, 0, 0],
|
1456
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1457
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1458
|
+
[0, 0, 0, 1, 0, 0, 0],
|
1459
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1460
|
+
[0, 0, 0, 0, 0, 0, 0],
|
1461
|
+
[0, 0, 0, 0, 0, 0, 0]]
|
1462
|
+
expected = np.asarray(expected, dtype=bool)
|
1463
|
+
expected = xp.asarray(expected)
|
1464
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
1465
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1466
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1467
|
+
[1, 1, 1, 1, 1, 1, 1],
|
1468
|
+
[0, 1, 1, 1, 1, 1, 0],
|
1469
|
+
[0, 0, 1, 1, 1, 0, 0],
|
1470
|
+
[0, 0, 0, 1, 0, 0, 0]], dtype=bool)
|
1471
|
+
data = xp.asarray(data)
|
1472
|
+
out = np.zeros(data.shape, dtype=bool)
|
1473
|
+
out = xp.asarray(out)
|
1474
|
+
ndimage.binary_erosion(data, struct, border_value=1,
|
1475
|
+
iterations=iterations, output=out)
|
1476
|
+
assert_array_almost_equal(out, expected)
|
1477
|
+
|
1478
|
+
@pytest.mark.parametrize('dtype', types)
|
1479
|
+
def test_binary_dilation01(self, dtype, xp):
|
1480
|
+
dtype = getattr(xp, dtype)
|
1481
|
+
data = xp.ones([], dtype=dtype)
|
1482
|
+
out = ndimage.binary_dilation(data)
|
1483
|
+
assert out == xp.asarray(1, dtype=out.dtype)
|
1484
|
+
|
1485
|
+
@pytest.mark.parametrize('dtype', types)
|
1486
|
+
def test_binary_dilation02(self, dtype, xp):
|
1487
|
+
dtype = getattr(xp, dtype)
|
1488
|
+
data = xp.zeros([], dtype=dtype)
|
1489
|
+
out = ndimage.binary_dilation(data)
|
1490
|
+
assert out == xp.asarray(False)
|
1491
|
+
|
1492
|
+
@pytest.mark.parametrize('dtype', types)
|
1493
|
+
def test_binary_dilation03(self, dtype, xp):
|
1494
|
+
dtype = getattr(xp, dtype)
|
1495
|
+
data = xp.ones([1], dtype=dtype)
|
1496
|
+
out = ndimage.binary_dilation(data)
|
1497
|
+
assert_array_almost_equal(out, xp.asarray([1], dtype=out.dtype))
|
1498
|
+
|
1499
|
+
@pytest.mark.parametrize('dtype', types)
|
1500
|
+
def test_binary_dilation04(self, dtype, xp):
|
1501
|
+
dtype = getattr(xp, dtype)
|
1502
|
+
data = xp.zeros([1], dtype=dtype)
|
1503
|
+
out = ndimage.binary_dilation(data)
|
1504
|
+
assert_array_almost_equal(out, xp.asarray([0]))
|
1505
|
+
|
1506
|
+
@pytest.mark.parametrize('dtype', types)
|
1507
|
+
def test_binary_dilation05(self, dtype, xp):
|
1508
|
+
dtype = getattr(xp, dtype)
|
1509
|
+
data = xp.ones([3], dtype=dtype)
|
1510
|
+
out = ndimage.binary_dilation(data)
|
1511
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1]))
|
1512
|
+
|
1513
|
+
@pytest.mark.parametrize('dtype', types)
|
1514
|
+
def test_binary_dilation05_broadcasted(self, dtype, xp):
|
1515
|
+
dtype = getattr(xp, dtype)
|
1516
|
+
data = xp.ones((1, ), dtype=dtype)
|
1517
|
+
data = xp.broadcast_to(data, (3,))
|
1518
|
+
out = ndimage.binary_dilation(data)
|
1519
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1]))
|
1520
|
+
|
1521
|
+
@pytest.mark.parametrize('dtype', types)
|
1522
|
+
def test_binary_dilation06(self, dtype, xp):
|
1523
|
+
dtype = getattr(xp, dtype)
|
1524
|
+
data = xp.zeros([3], dtype=dtype)
|
1525
|
+
out = ndimage.binary_dilation(data)
|
1526
|
+
assert_array_almost_equal(out, xp.asarray([0, 0, 0]))
|
1527
|
+
|
1528
|
+
@pytest.mark.parametrize('dtype', types)
|
1529
|
+
def test_binary_dilation07(self, dtype, xp):
|
1530
|
+
data = np.zeros([3], dtype=dtype)
|
1531
|
+
data[1] = 1
|
1532
|
+
data = xp.asarray(data)
|
1533
|
+
out = ndimage.binary_dilation(data)
|
1534
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1]))
|
1535
|
+
|
1536
|
+
@pytest.mark.parametrize('dtype', types)
|
1537
|
+
def test_binary_dilation08(self, dtype, xp):
|
1538
|
+
data = np.zeros([5], dtype=dtype)
|
1539
|
+
data[1] = 1
|
1540
|
+
data[3] = 1
|
1541
|
+
data = xp.asarray(data)
|
1542
|
+
out = ndimage.binary_dilation(data)
|
1543
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1, 1, 1]))
|
1544
|
+
|
1545
|
+
@pytest.mark.parametrize('dtype', types)
|
1546
|
+
def test_binary_dilation09(self, dtype, xp):
|
1547
|
+
data = np.zeros([5], dtype=dtype)
|
1548
|
+
data[1] = 1
|
1549
|
+
data = xp.asarray(data)
|
1550
|
+
out = ndimage.binary_dilation(data)
|
1551
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 1, 0, 0]))
|
1552
|
+
|
1553
|
+
@pytest.mark.parametrize('dtype', types)
|
1554
|
+
def test_binary_dilation10(self, dtype, xp):
|
1555
|
+
data = np.zeros([5], dtype=dtype)
|
1556
|
+
data[1] = 1
|
1557
|
+
data = xp.asarray(data)
|
1558
|
+
out = ndimage.binary_dilation(data, origin=-1)
|
1559
|
+
assert_array_almost_equal(out, xp.asarray([0, 1, 1, 1, 0]))
|
1560
|
+
|
1561
|
+
@pytest.mark.parametrize('dtype', types)
|
1562
|
+
def test_binary_dilation11(self, dtype, xp):
|
1563
|
+
data = np.zeros([5], dtype=dtype)
|
1564
|
+
data[1] = 1
|
1565
|
+
data = xp.asarray(data)
|
1566
|
+
out = ndimage.binary_dilation(data, origin=1)
|
1567
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 0, 0, 0]))
|
1568
|
+
|
1569
|
+
@pytest.mark.parametrize('dtype', types)
|
1570
|
+
def test_binary_dilation12(self, dtype, xp):
|
1571
|
+
data = np.zeros([5], dtype=dtype)
|
1572
|
+
data[1] = 1
|
1573
|
+
data = xp.asarray(data)
|
1574
|
+
struct = xp.asarray([1, 0, 1])
|
1575
|
+
out = ndimage.binary_dilation(data, struct)
|
1576
|
+
assert_array_almost_equal(out, xp.asarray([1, 0, 1, 0, 0]))
|
1577
|
+
|
1578
|
+
@pytest.mark.parametrize('dtype', types)
|
1579
|
+
def test_binary_dilation13(self, dtype, xp):
|
1580
|
+
data = np.zeros([5], dtype=dtype)
|
1581
|
+
data[1] = 1
|
1582
|
+
data = xp.asarray(data)
|
1583
|
+
struct = xp.asarray([1, 0, 1])
|
1584
|
+
out = ndimage.binary_dilation(data, struct, border_value=1)
|
1585
|
+
assert_array_almost_equal(out, xp.asarray([1, 0, 1, 0, 1]))
|
1586
|
+
|
1587
|
+
@pytest.mark.parametrize('dtype', types)
|
1588
|
+
def test_binary_dilation14(self, dtype, xp):
|
1589
|
+
data = np.zeros([5], dtype=dtype)
|
1590
|
+
data[1] = 1
|
1591
|
+
data = xp.asarray(data)
|
1592
|
+
struct = xp.asarray([1, 0, 1])
|
1593
|
+
out = ndimage.binary_dilation(data, struct, origin=-1)
|
1594
|
+
assert_array_almost_equal(out, xp.asarray([0, 1, 0, 1, 0]))
|
1595
|
+
|
1596
|
+
@pytest.mark.parametrize('dtype', types)
|
1597
|
+
def test_binary_dilation15(self, dtype, xp):
|
1598
|
+
data = np.zeros([5], dtype=dtype)
|
1599
|
+
data[1] = 1
|
1600
|
+
data = xp.asarray(data)
|
1601
|
+
struct = xp.asarray([1, 0, 1])
|
1602
|
+
out = ndimage.binary_dilation(data, struct,
|
1603
|
+
origin=-1, border_value=1)
|
1604
|
+
assert_array_almost_equal(out, xp.asarray([1, 1, 0, 1, 0]))
|
1605
|
+
|
1606
|
+
@pytest.mark.parametrize('dtype', types)
|
1607
|
+
def test_binary_dilation16(self, dtype, xp):
|
1608
|
+
dtype = getattr(xp, dtype)
|
1609
|
+
data = xp.ones([1, 1], dtype=dtype)
|
1610
|
+
out = ndimage.binary_dilation(data)
|
1611
|
+
assert_array_almost_equal(out, xp.asarray([[1]]))
|
1612
|
+
|
1613
|
+
@pytest.mark.parametrize('dtype', types)
|
1614
|
+
def test_binary_dilation17(self, dtype, xp):
|
1615
|
+
dtype = getattr(xp, dtype)
|
1616
|
+
data = xp.zeros([1, 1], dtype=dtype)
|
1617
|
+
out = ndimage.binary_dilation(data)
|
1618
|
+
assert_array_almost_equal(out, xp.asarray([[0]]))
|
1619
|
+
|
1620
|
+
@pytest.mark.parametrize('dtype', types)
|
1621
|
+
def test_binary_dilation18(self, dtype, xp):
|
1622
|
+
dtype = getattr(xp, dtype)
|
1623
|
+
data = xp.ones([1, 3], dtype=dtype)
|
1624
|
+
out = ndimage.binary_dilation(data)
|
1625
|
+
assert_array_almost_equal(out, xp.asarray([[1, 1, 1]]))
|
1626
|
+
|
1627
|
+
@pytest.mark.parametrize('dtype', types)
|
1628
|
+
def test_binary_dilation19(self, dtype, xp):
|
1629
|
+
dtype = getattr(xp, dtype)
|
1630
|
+
data = xp.ones([3, 3], dtype=dtype)
|
1631
|
+
out = ndimage.binary_dilation(data)
|
1632
|
+
assert_array_almost_equal(out, xp.asarray([[1, 1, 1],
|
1633
|
+
[1, 1, 1],
|
1634
|
+
[1, 1, 1]]))
|
1635
|
+
|
1636
|
+
@pytest.mark.parametrize('dtype', types)
|
1637
|
+
def test_binary_dilation20(self, dtype, xp):
|
1638
|
+
data = np.zeros([3, 3], dtype=dtype)
|
1639
|
+
data[1, 1] = 1
|
1640
|
+
data = xp.asarray(data)
|
1641
|
+
out = ndimage.binary_dilation(data)
|
1642
|
+
assert_array_almost_equal(out, xp.asarray([[0, 1, 0],
|
1643
|
+
[1, 1, 1],
|
1644
|
+
[0, 1, 0]]))
|
1645
|
+
|
1646
|
+
@pytest.mark.parametrize('dtype', types)
|
1647
|
+
def test_binary_dilation21(self, dtype, xp):
|
1648
|
+
struct = ndimage.generate_binary_structure(2, 2)
|
1649
|
+
struct = xp.asarray(struct)
|
1650
|
+
data = np.zeros([3, 3], dtype=dtype)
|
1651
|
+
data[1, 1] = 1
|
1652
|
+
data = xp.asarray(data)
|
1653
|
+
out = ndimage.binary_dilation(data, struct)
|
1654
|
+
assert_array_almost_equal(out, xp.asarray([[1, 1, 1],
|
1655
|
+
[1, 1, 1],
|
1656
|
+
[1, 1, 1]]))
|
1657
|
+
|
1658
|
+
@pytest.mark.parametrize('dtype', types)
|
1659
|
+
def test_binary_dilation22(self, dtype, xp):
|
1660
|
+
dtype = getattr(xp, dtype)
|
1661
|
+
expected = [[0, 1, 0, 0, 0, 0, 0, 0],
|
1662
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
1663
|
+
[0, 1, 0, 0, 0, 1, 0, 0],
|
1664
|
+
[0, 0, 0, 1, 1, 1, 1, 0],
|
1665
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
1666
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
1667
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1668
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1669
|
+
expected = xp.asarray(expected)
|
1670
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1671
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1672
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1673
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1674
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1675
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1676
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1677
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1678
|
+
out = ndimage.binary_dilation(data)
|
1679
|
+
assert_array_almost_equal(out, expected)
|
1680
|
+
|
1681
|
+
@pytest.mark.parametrize('dtype', types)
|
1682
|
+
def test_binary_dilation23(self, dtype, xp):
|
1683
|
+
dtype = getattr(xp, dtype)
|
1684
|
+
expected = [[1, 1, 1, 1, 1, 1, 1, 1],
|
1685
|
+
[1, 1, 1, 0, 0, 0, 0, 1],
|
1686
|
+
[1, 1, 0, 0, 0, 1, 0, 1],
|
1687
|
+
[1, 0, 0, 1, 1, 1, 1, 1],
|
1688
|
+
[1, 0, 1, 1, 1, 1, 0, 1],
|
1689
|
+
[1, 1, 1, 1, 1, 1, 1, 1],
|
1690
|
+
[1, 0, 1, 0, 0, 1, 0, 1],
|
1691
|
+
[1, 1, 1, 1, 1, 1, 1, 1]]
|
1692
|
+
expected = xp.asarray(expected)
|
1693
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1694
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1695
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1696
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1697
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1698
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1699
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1700
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1701
|
+
out = ndimage.binary_dilation(data, border_value=1)
|
1702
|
+
assert_array_almost_equal(out, expected)
|
1703
|
+
|
1704
|
+
@pytest.mark.parametrize('dtype', types)
|
1705
|
+
def test_binary_dilation24(self, dtype, xp):
|
1706
|
+
dtype = getattr(xp, dtype)
|
1707
|
+
expected = [[1, 1, 0, 0, 0, 0, 0, 0],
|
1708
|
+
[1, 0, 0, 0, 1, 0, 0, 0],
|
1709
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
1710
|
+
[0, 1, 1, 1, 1, 0, 0, 0],
|
1711
|
+
[1, 1, 1, 1, 1, 1, 0, 0],
|
1712
|
+
[0, 1, 0, 0, 1, 0, 0, 0],
|
1713
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1714
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1715
|
+
expected = xp.asarray(expected)
|
1716
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1717
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1718
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1719
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1720
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1721
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1722
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1723
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1724
|
+
out = ndimage.binary_dilation(data, origin=(1, 1))
|
1725
|
+
assert_array_almost_equal(out, expected)
|
1726
|
+
|
1727
|
+
@pytest.mark.parametrize('dtype', types)
|
1728
|
+
def test_binary_dilation25(self, dtype, xp):
|
1729
|
+
dtype = getattr(xp, dtype)
|
1730
|
+
expected = [[1, 1, 0, 0, 0, 0, 1, 1],
|
1731
|
+
[1, 0, 0, 0, 1, 0, 1, 1],
|
1732
|
+
[0, 0, 1, 1, 1, 1, 1, 1],
|
1733
|
+
[0, 1, 1, 1, 1, 0, 1, 1],
|
1734
|
+
[1, 1, 1, 1, 1, 1, 1, 1],
|
1735
|
+
[0, 1, 0, 0, 1, 0, 1, 1],
|
1736
|
+
[1, 1, 1, 1, 1, 1, 1, 1],
|
1737
|
+
[1, 1, 1, 1, 1, 1, 1, 1]]
|
1738
|
+
expected = xp.asarray(expected)
|
1739
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1740
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1741
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1742
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1743
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1744
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1745
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1746
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1747
|
+
out = ndimage.binary_dilation(data, origin=(1, 1), border_value=1)
|
1748
|
+
assert_array_almost_equal(out, expected)
|
1749
|
+
|
1750
|
+
@pytest.mark.parametrize('dtype', types)
|
1751
|
+
def test_binary_dilation26(self, dtype, xp):
|
1752
|
+
dtype = getattr(xp, dtype)
|
1753
|
+
struct = ndimage.generate_binary_structure(2, 2)
|
1754
|
+
expected = [[1, 1, 1, 0, 0, 0, 0, 0],
|
1755
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
1756
|
+
[1, 1, 1, 0, 1, 1, 1, 0],
|
1757
|
+
[0, 0, 1, 1, 1, 1, 1, 0],
|
1758
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
1759
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
1760
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
1761
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1762
|
+
struct = xp.asarray(struct)
|
1763
|
+
expected = xp.asarray(expected)
|
1764
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1765
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1766
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1767
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1768
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1769
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1770
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1771
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1772
|
+
out = ndimage.binary_dilation(data, struct)
|
1773
|
+
assert_array_almost_equal(out, expected)
|
1774
|
+
|
1775
|
+
@pytest.mark.parametrize('dtype', types)
|
1776
|
+
def test_binary_dilation27(self, dtype, xp):
|
1777
|
+
dtype = getattr(xp, dtype)
|
1778
|
+
struct = [[0, 1],
|
1779
|
+
[1, 1]]
|
1780
|
+
expected = [[0, 1, 0, 0, 0, 0, 0, 0],
|
1781
|
+
[1, 1, 0, 0, 0, 0, 0, 0],
|
1782
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1783
|
+
[0, 0, 0, 1, 1, 1, 0, 0],
|
1784
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
1785
|
+
[0, 1, 1, 0, 1, 1, 0, 0],
|
1786
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1787
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1788
|
+
struct = xp.asarray(struct)
|
1789
|
+
expected = xp.asarray(expected)
|
1790
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1791
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1792
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1793
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1794
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1795
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1796
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1797
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
1798
|
+
out = ndimage.binary_dilation(data, struct)
|
1799
|
+
assert_array_almost_equal(out, expected)
|
1800
|
+
|
1801
|
+
@pytest.mark.parametrize('dtype', types)
|
1802
|
+
def test_binary_dilation28(self, dtype, xp):
|
1803
|
+
dtype = getattr(xp, dtype)
|
1804
|
+
expected = [[1, 1, 1, 1],
|
1805
|
+
[1, 0, 0, 1],
|
1806
|
+
[1, 0, 0, 1],
|
1807
|
+
[1, 1, 1, 1]]
|
1808
|
+
expected = xp.asarray(expected)
|
1809
|
+
data = xp.asarray([[0, 0, 0, 0],
|
1810
|
+
[0, 0, 0, 0],
|
1811
|
+
[0, 0, 0, 0],
|
1812
|
+
[0, 0, 0, 0]], dtype=dtype)
|
1813
|
+
out = ndimage.binary_dilation(data, border_value=1)
|
1814
|
+
assert_array_almost_equal(out, expected)
|
1815
|
+
|
1816
|
+
@xfail_xp_backends("cupy",
|
1817
|
+
reason="NotImplementedError: only brute_force iteration")
|
1818
|
+
def test_binary_dilation29(self, xp):
|
1819
|
+
struct = [[0, 1],
|
1820
|
+
[1, 1]]
|
1821
|
+
expected = [[0, 0, 0, 0, 0],
|
1822
|
+
[0, 0, 0, 1, 0],
|
1823
|
+
[0, 0, 1, 1, 0],
|
1824
|
+
[0, 1, 1, 1, 0],
|
1825
|
+
[0, 0, 0, 0, 0]]
|
1826
|
+
struct = xp.asarray(struct)
|
1827
|
+
expected = xp.asarray(expected)
|
1828
|
+
data = np.asarray([[0, 0, 0, 0, 0],
|
1829
|
+
[0, 0, 0, 0, 0],
|
1830
|
+
[0, 0, 0, 0, 0],
|
1831
|
+
[0, 0, 0, 1, 0],
|
1832
|
+
[0, 0, 0, 0, 0]], dtype=bool)
|
1833
|
+
data = xp.asarray(data)
|
1834
|
+
out = ndimage.binary_dilation(data, struct, iterations=2)
|
1835
|
+
assert_array_almost_equal(out, expected)
|
1836
|
+
|
1837
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1838
|
+
reason='output= arrays are numpy-specific')
|
1839
|
+
@xfail_xp_backends("cupy",
|
1840
|
+
reason="NotImplementedError: only brute_force iteration")
|
1841
|
+
def test_binary_dilation30(self, xp):
|
1842
|
+
struct = [[0, 1],
|
1843
|
+
[1, 1]]
|
1844
|
+
expected = [[0, 0, 0, 0, 0],
|
1845
|
+
[0, 0, 0, 1, 0],
|
1846
|
+
[0, 0, 1, 1, 0],
|
1847
|
+
[0, 1, 1, 1, 0],
|
1848
|
+
[0, 0, 0, 0, 0]]
|
1849
|
+
struct = xp.asarray(struct)
|
1850
|
+
expected = xp.asarray(expected)
|
1851
|
+
data = xp.asarray([[0, 0, 0, 0, 0],
|
1852
|
+
[0, 0, 0, 0, 0],
|
1853
|
+
[0, 0, 0, 0, 0],
|
1854
|
+
[0, 0, 0, 1, 0],
|
1855
|
+
[0, 0, 0, 0, 0]], dtype=bool)
|
1856
|
+
data = xp.asarray(data)
|
1857
|
+
out = np.zeros(data.shape, dtype=bool)
|
1858
|
+
out = xp.asarray(out)
|
1859
|
+
ndimage.binary_dilation(data, struct, iterations=2, output=out)
|
1860
|
+
assert_array_almost_equal(out, expected)
|
1861
|
+
|
1862
|
+
@xfail_xp_backends("cupy",
|
1863
|
+
reason="NotImplementedError: only brute_force iteration")
|
1864
|
+
def test_binary_dilation31(self, xp):
|
1865
|
+
struct = [[0, 1],
|
1866
|
+
[1, 1]]
|
1867
|
+
expected = [[0, 0, 0, 1, 0],
|
1868
|
+
[0, 0, 1, 1, 0],
|
1869
|
+
[0, 1, 1, 1, 0],
|
1870
|
+
[1, 1, 1, 1, 0],
|
1871
|
+
[0, 0, 0, 0, 0]]
|
1872
|
+
struct = xp.asarray(struct)
|
1873
|
+
expected = xp.asarray(expected)
|
1874
|
+
data = np.asarray([[0, 0, 0, 0, 0],
|
1875
|
+
[0, 0, 0, 0, 0],
|
1876
|
+
[0, 0, 0, 0, 0],
|
1877
|
+
[0, 0, 0, 1, 0],
|
1878
|
+
[0, 0, 0, 0, 0]], dtype=bool)
|
1879
|
+
data = xp.asarray(data)
|
1880
|
+
out = ndimage.binary_dilation(data, struct, iterations=3)
|
1881
|
+
assert_array_almost_equal(out, expected)
|
1882
|
+
|
1883
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1884
|
+
reason='output= arrays are numpy-specific')
|
1885
|
+
@xfail_xp_backends("cupy",
|
1886
|
+
reason="NotImplementedError: only brute_force iteration")
|
1887
|
+
def test_binary_dilation32(self, xp):
|
1888
|
+
struct = [[0, 1],
|
1889
|
+
[1, 1]]
|
1890
|
+
expected = [[0, 0, 0, 1, 0],
|
1891
|
+
[0, 0, 1, 1, 0],
|
1892
|
+
[0, 1, 1, 1, 0],
|
1893
|
+
[1, 1, 1, 1, 0],
|
1894
|
+
[0, 0, 0, 0, 0]]
|
1895
|
+
struct = xp.asarray(struct)
|
1896
|
+
expected = xp.asarray(expected)
|
1897
|
+
data = np.asarray([[0, 0, 0, 0, 0],
|
1898
|
+
[0, 0, 0, 0, 0],
|
1899
|
+
[0, 0, 0, 0, 0],
|
1900
|
+
[0, 0, 0, 1, 0],
|
1901
|
+
[0, 0, 0, 0, 0]], dtype=bool)
|
1902
|
+
data = xp.asarray(data)
|
1903
|
+
out = np.zeros(data.shape, dtype=bool)
|
1904
|
+
out = xp.asarray(out)
|
1905
|
+
ndimage.binary_dilation(data, struct, iterations=3, output=out)
|
1906
|
+
assert_array_almost_equal(out, expected)
|
1907
|
+
|
1908
|
+
@xfail_xp_backends("cupy",
|
1909
|
+
reason="NotImplementedError: only brute_force iteration")
|
1910
|
+
def test_binary_dilation33(self, xp):
|
1911
|
+
struct = [[0, 1, 0],
|
1912
|
+
[1, 1, 1],
|
1913
|
+
[0, 1, 0]]
|
1914
|
+
struct = xp.asarray(struct)
|
1915
|
+
expected = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
1916
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1917
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1918
|
+
[0, 0, 0, 0, 1, 1, 0, 0],
|
1919
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
1920
|
+
[0, 1, 1, 0, 1, 1, 0, 0],
|
1921
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1922
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1923
|
+
expected = xp.asarray(expected)
|
1924
|
+
mask = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
1925
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1926
|
+
[0, 0, 0, 0, 0, 0, 1, 0],
|
1927
|
+
[0, 0, 0, 0, 1, 1, 0, 0],
|
1928
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
1929
|
+
[0, 1, 1, 0, 1, 1, 0, 0],
|
1930
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1931
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1932
|
+
mask = xp.asarray(mask)
|
1933
|
+
data = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
1934
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1935
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1936
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1937
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1938
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1939
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1940
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1941
|
+
data = xp.asarray(data)
|
1942
|
+
|
1943
|
+
out = ndimage.binary_dilation(data, struct, iterations=-1,
|
1944
|
+
mask=mask, border_value=0)
|
1945
|
+
assert_array_almost_equal(out, expected)
|
1946
|
+
|
1947
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
1948
|
+
reason='inplace output= arrays are numpy-specific')
|
1949
|
+
@xfail_xp_backends("cupy",
|
1950
|
+
reason="NotImplementedError: only brute_force iteration")
|
1951
|
+
def test_binary_dilation34(self, xp):
|
1952
|
+
struct = [[0, 1, 0],
|
1953
|
+
[1, 1, 1],
|
1954
|
+
[0, 1, 0]]
|
1955
|
+
struct = xp.asarray(struct)
|
1956
|
+
expected = [[0, 1, 0, 0, 0, 0, 0, 0],
|
1957
|
+
[0, 1, 1, 0, 0, 0, 0, 0],
|
1958
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
1959
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1960
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1961
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1962
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1963
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
1964
|
+
mask = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
1965
|
+
[0, 1, 1, 0, 0, 0, 0, 0],
|
1966
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
1967
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1968
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1969
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1970
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1971
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
1972
|
+
mask = xp.asarray(mask)
|
1973
|
+
data = np.zeros(mask.shape, dtype=bool)
|
1974
|
+
data = xp.asarray(data)
|
1975
|
+
out = ndimage.binary_dilation(data, struct, iterations=-1,
|
1976
|
+
mask=mask, border_value=1)
|
1977
|
+
assert_array_almost_equal(out, expected)
|
1978
|
+
|
1979
|
+
@pytest.mark.parametrize('dtype', types)
|
1980
|
+
def test_binary_dilation35(self, dtype, xp):
|
1981
|
+
dtype = getattr(xp, dtype)
|
1982
|
+
tmp = [[1, 1, 0, 0, 0, 0, 1, 1],
|
1983
|
+
[1, 0, 0, 0, 1, 0, 1, 1],
|
1984
|
+
[0, 0, 1, 1, 1, 1, 1, 1],
|
1985
|
+
[0, 1, 1, 1, 1, 0, 1, 1],
|
1986
|
+
[1, 1, 1, 1, 1, 1, 1, 1],
|
1987
|
+
[0, 1, 0, 0, 1, 0, 1, 1],
|
1988
|
+
[1, 1, 1, 1, 1, 1, 1, 1],
|
1989
|
+
[1, 1, 1, 1, 1, 1, 1, 1]]
|
1990
|
+
|
1991
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
1992
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
1993
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1994
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
1995
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
1996
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
1997
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
1998
|
+
[0, 0, 0, 0, 0, 0, 0, 0]])
|
1999
|
+
mask = [[0, 0, 0, 0, 0, 0, 0, 0],
|
2000
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2001
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2002
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2003
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2004
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2005
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2006
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2007
|
+
mask = np.asarray(mask, dtype=bool)
|
2008
|
+
|
2009
|
+
expected = np.logical_and(tmp, mask)
|
2010
|
+
tmp = np.logical_and(data, np.logical_not(mask))
|
2011
|
+
expected = np.logical_or(expected, tmp)
|
2012
|
+
|
2013
|
+
mask = xp.asarray(mask)
|
2014
|
+
expected = xp.asarray(expected)
|
2015
|
+
|
2016
|
+
data = xp.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2017
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
2018
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2019
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
2020
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
2021
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2022
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2023
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2024
|
+
out = ndimage.binary_dilation(data, mask=mask,
|
2025
|
+
origin=(1, 1), border_value=1)
|
2026
|
+
assert_array_almost_equal(out, expected)
|
2027
|
+
|
2028
|
+
def test_binary_dilation36(self, xp):
|
2029
|
+
# gh-21009
|
2030
|
+
data = np.zeros([], dtype=bool)
|
2031
|
+
data = xp.asarray(data)
|
2032
|
+
out = ndimage.binary_dilation(data, iterations=-1)
|
2033
|
+
assert out == xp.asarray(False)
|
2034
|
+
|
2035
|
+
def test_binary_propagation01(self, xp):
|
2036
|
+
struct = [[0, 1, 0],
|
2037
|
+
[1, 1, 1],
|
2038
|
+
[0, 1, 0]]
|
2039
|
+
struct = xp.asarray(struct)
|
2040
|
+
expected = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
2041
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2042
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2043
|
+
[0, 0, 0, 0, 1, 1, 0, 0],
|
2044
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
2045
|
+
[0, 1, 1, 0, 1, 1, 0, 0],
|
2046
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2047
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2048
|
+
expected = xp.asarray(expected)
|
2049
|
+
mask = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
2050
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2051
|
+
[0, 0, 0, 0, 0, 0, 1, 0],
|
2052
|
+
[0, 0, 0, 0, 1, 1, 0, 0],
|
2053
|
+
[0, 0, 1, 1, 1, 0, 0, 0],
|
2054
|
+
[0, 1, 1, 0, 1, 1, 0, 0],
|
2055
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2056
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2057
|
+
mask = xp.asarray(mask)
|
2058
|
+
data = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
2059
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2060
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2061
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2062
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2063
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
2064
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2065
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2066
|
+
data = xp.asarray(data)
|
2067
|
+
out = ndimage.binary_propagation(data, struct,
|
2068
|
+
mask=mask, border_value=0)
|
2069
|
+
assert_array_almost_equal(out, expected)
|
2070
|
+
|
2071
|
+
def test_binary_propagation02(self, xp):
|
2072
|
+
struct = [[0, 1, 0],
|
2073
|
+
[1, 1, 1],
|
2074
|
+
[0, 1, 0]]
|
2075
|
+
expected = [[0, 1, 0, 0, 0, 0, 0, 0],
|
2076
|
+
[0, 1, 1, 0, 0, 0, 0, 0],
|
2077
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
2078
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2079
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2080
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2081
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2082
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2083
|
+
expected = xp.asarray(expected)
|
2084
|
+
struct = xp.asarray(struct)
|
2085
|
+
mask = np.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
2086
|
+
[0, 1, 1, 0, 0, 0, 0, 0],
|
2087
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
2088
|
+
[0, 0, 0, 0, 0, 1, 0, 0],
|
2089
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
2090
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2091
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2092
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2093
|
+
mask = xp.asarray(mask)
|
2094
|
+
data = np.zeros(mask.shape, dtype=bool)
|
2095
|
+
data = xp.asarray(data)
|
2096
|
+
out = ndimage.binary_propagation(data, struct,
|
2097
|
+
mask=mask, border_value=1)
|
2098
|
+
assert_array_almost_equal(out, expected)
|
2099
|
+
|
2100
|
+
def test_binary_propagation03(self, xp):
|
2101
|
+
# gh-21009
|
2102
|
+
data = xp.asarray(np.zeros([], dtype=bool))
|
2103
|
+
expected = xp.asarray(np.zeros([], dtype=bool))
|
2104
|
+
out = ndimage.binary_propagation(data)
|
2105
|
+
assert out == expected
|
2106
|
+
|
2107
|
+
@pytest.mark.parametrize('dtype', types)
|
2108
|
+
def test_binary_opening01(self, dtype, xp):
|
2109
|
+
dtype = getattr(xp, dtype)
|
2110
|
+
expected = [[0, 1, 0, 0, 0, 0, 0, 0],
|
2111
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2112
|
+
[0, 1, 0, 0, 0, 1, 0, 0],
|
2113
|
+
[0, 0, 0, 0, 1, 1, 1, 0],
|
2114
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2115
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2116
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2117
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2118
|
+
expected = xp.asarray(expected)
|
2119
|
+
data = xp.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
2120
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2121
|
+
[0, 1, 0, 0, 0, 1, 0, 0],
|
2122
|
+
[0, 0, 0, 1, 1, 1, 1, 0],
|
2123
|
+
[0, 0, 1, 1, 0, 1, 0, 0],
|
2124
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2125
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2126
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2127
|
+
out = ndimage.binary_opening(data)
|
2128
|
+
assert_array_almost_equal(out, expected)
|
2129
|
+
|
2130
|
+
@pytest.mark.parametrize('dtype', types)
|
2131
|
+
def test_binary_opening02(self, dtype, xp):
|
2132
|
+
dtype = getattr(xp, dtype)
|
2133
|
+
struct = ndimage.generate_binary_structure(2, 2)
|
2134
|
+
expected = [[1, 1, 1, 0, 0, 0, 0, 0],
|
2135
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2136
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2137
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2138
|
+
[0, 1, 1, 1, 0, 0, 0, 0],
|
2139
|
+
[0, 1, 1, 1, 0, 0, 0, 0],
|
2140
|
+
[0, 1, 1, 1, 0, 0, 0, 0],
|
2141
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2142
|
+
expected = xp.asarray(expected)
|
2143
|
+
struct = xp.asarray(struct)
|
2144
|
+
data = xp.asarray([[1, 1, 1, 0, 0, 0, 0, 0],
|
2145
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2146
|
+
[1, 1, 1, 1, 1, 1, 1, 0],
|
2147
|
+
[0, 0, 1, 1, 1, 1, 1, 0],
|
2148
|
+
[0, 1, 1, 1, 0, 1, 1, 0],
|
2149
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2150
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2151
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2152
|
+
out = ndimage.binary_opening(data, struct)
|
2153
|
+
assert_array_almost_equal(out, expected)
|
2154
|
+
|
2155
|
+
@pytest.mark.parametrize('dtype', types)
|
2156
|
+
def test_binary_closing01(self, dtype, xp):
|
2157
|
+
dtype = getattr(xp, dtype)
|
2158
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
2159
|
+
[0, 1, 1, 0, 0, 0, 0, 0],
|
2160
|
+
[0, 1, 1, 1, 0, 1, 0, 0],
|
2161
|
+
[0, 0, 1, 1, 1, 1, 1, 0],
|
2162
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2163
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2164
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2165
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2166
|
+
expected = xp.asarray(expected)
|
2167
|
+
data = xp.asarray([[0, 1, 0, 0, 0, 0, 0, 0],
|
2168
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2169
|
+
[0, 1, 0, 0, 0, 1, 0, 0],
|
2170
|
+
[0, 0, 0, 1, 1, 1, 1, 0],
|
2171
|
+
[0, 0, 1, 1, 0, 1, 0, 0],
|
2172
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2173
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2174
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2175
|
+
out = ndimage.binary_closing(data)
|
2176
|
+
assert_array_almost_equal(out, expected)
|
2177
|
+
|
2178
|
+
@pytest.mark.parametrize('dtype', types)
|
2179
|
+
def test_binary_closing02(self, dtype, xp):
|
2180
|
+
dtype = getattr(xp, dtype)
|
2181
|
+
struct = ndimage.generate_binary_structure(2, 2)
|
2182
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
2183
|
+
[0, 1, 1, 0, 0, 0, 0, 0],
|
2184
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2185
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2186
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2187
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2188
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2189
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2190
|
+
expected = xp.asarray(expected)
|
2191
|
+
struct = xp.asarray(struct)
|
2192
|
+
data = xp.asarray([[1, 1, 1, 0, 0, 0, 0, 0],
|
2193
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2194
|
+
[1, 1, 1, 1, 1, 1, 1, 0],
|
2195
|
+
[0, 0, 1, 1, 1, 1, 1, 0],
|
2196
|
+
[0, 1, 1, 1, 0, 1, 1, 0],
|
2197
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2198
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2199
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2200
|
+
out = ndimage.binary_closing(data, struct)
|
2201
|
+
assert_array_almost_equal(out, expected)
|
2202
|
+
|
2203
|
+
def test_binary_fill_holes01(self, xp):
|
2204
|
+
expected = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2205
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2206
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2207
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2208
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2209
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2210
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2211
|
+
expected = xp.asarray(expected)
|
2212
|
+
|
2213
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2214
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2215
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2216
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2217
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2218
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2219
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2220
|
+
data = xp.asarray(data)
|
2221
|
+
|
2222
|
+
out = ndimage.binary_fill_holes(data)
|
2223
|
+
assert_array_almost_equal(out, expected)
|
2224
|
+
|
2225
|
+
def test_binary_fill_holes02(self, xp):
|
2226
|
+
expected = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2227
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
2228
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2229
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2230
|
+
[0, 0, 1, 1, 1, 1, 0, 0],
|
2231
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
2232
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2233
|
+
expected = xp.asarray(expected)
|
2234
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2235
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
2236
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2237
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2238
|
+
[0, 0, 1, 0, 0, 1, 0, 0],
|
2239
|
+
[0, 0, 0, 1, 1, 0, 0, 0],
|
2240
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2241
|
+
data = xp.asarray(data)
|
2242
|
+
out = ndimage.binary_fill_holes(data)
|
2243
|
+
assert_array_almost_equal(out, expected)
|
2244
|
+
|
2245
|
+
def test_binary_fill_holes03(self, xp):
|
2246
|
+
expected = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2247
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
2248
|
+
[0, 1, 1, 1, 0, 1, 1, 1],
|
2249
|
+
[0, 1, 1, 1, 0, 1, 1, 1],
|
2250
|
+
[0, 1, 1, 1, 0, 1, 1, 1],
|
2251
|
+
[0, 0, 1, 0, 0, 1, 1, 1],
|
2252
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2253
|
+
expected = xp.asarray(expected)
|
2254
|
+
data = np.asarray([[0, 0, 0, 0, 0, 0, 0, 0],
|
2255
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
2256
|
+
[0, 1, 0, 1, 0, 1, 1, 1],
|
2257
|
+
[0, 1, 0, 1, 0, 1, 0, 1],
|
2258
|
+
[0, 1, 0, 1, 0, 1, 0, 1],
|
2259
|
+
[0, 0, 1, 0, 0, 1, 1, 1],
|
2260
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=bool)
|
2261
|
+
data = xp.asarray(data)
|
2262
|
+
out = ndimage.binary_fill_holes(data)
|
2263
|
+
assert_array_almost_equal(out, expected)
|
2264
|
+
|
2265
|
+
@skip_xp_backends(cpu_only=True)
|
2266
|
+
@skip_xp_backends(
|
2267
|
+
"cupy", reason="these filters do not yet have axes support in CuPy")
|
2268
|
+
@skip_xp_backends(
|
2269
|
+
"jax.numpy", reason="these filters are not implemented in JAX.numpy")
|
2270
|
+
@pytest.mark.parametrize('border_value',[0, 1])
|
2271
|
+
@pytest.mark.parametrize('origin', [(0, 0), (-1, 0)])
|
2272
|
+
@pytest.mark.parametrize('expand_axis', [0, 1, 2])
|
2273
|
+
@pytest.mark.parametrize('func_name', ["binary_erosion",
|
2274
|
+
"binary_dilation",
|
2275
|
+
"binary_opening",
|
2276
|
+
"binary_closing",
|
2277
|
+
"binary_hit_or_miss",
|
2278
|
+
"binary_propagation",
|
2279
|
+
"binary_fill_holes"])
|
2280
|
+
def test_binary_axes(self, xp, func_name, expand_axis, origin, border_value):
|
2281
|
+
struct = np.asarray([[0, 1, 0],
|
2282
|
+
[1, 1, 1],
|
2283
|
+
[0, 1, 0]], bool)
|
2284
|
+
struct = xp.asarray(struct)
|
2285
|
+
|
2286
|
+
data = np.asarray([[0, 0, 0, 1, 0, 0, 0],
|
2287
|
+
[0, 0, 0, 1, 0, 0, 0],
|
2288
|
+
[0, 0, 1, 1, 0, 1, 0],
|
2289
|
+
[0, 1, 0, 1, 1, 0, 1],
|
2290
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2291
|
+
[0, 0, 1, 1, 0, 0, 0],
|
2292
|
+
[0, 0, 0, 1, 0, 0, 0]], bool)
|
2293
|
+
data = xp.asarray(data)
|
2294
|
+
if func_name == "binary_hit_or_miss":
|
2295
|
+
kwargs = dict(origin1=origin, origin2=origin)
|
2296
|
+
else:
|
2297
|
+
kwargs = dict(origin=origin)
|
2298
|
+
border_supported = func_name not in ["binary_hit_or_miss",
|
2299
|
+
"binary_fill_holes"]
|
2300
|
+
if border_supported:
|
2301
|
+
kwargs['border_value'] = border_value
|
2302
|
+
elif border_value != 0:
|
2303
|
+
pytest.skip('border_value !=0 unsupported by this function')
|
2304
|
+
func = getattr(ndimage, func_name)
|
2305
|
+
expected = func(data, struct, **kwargs)
|
2306
|
+
|
2307
|
+
# replicate data and expected result along a new axis
|
2308
|
+
n_reps = 5
|
2309
|
+
expected = xp.stack([expected] * n_reps, axis=expand_axis)
|
2310
|
+
data = xp.stack([data] * n_reps, axis=expand_axis)
|
2311
|
+
|
2312
|
+
# filter all axes except expand_axis
|
2313
|
+
axes = [0, 1, 2]
|
2314
|
+
axes.remove(expand_axis)
|
2315
|
+
if is_numpy(xp) or is_cupy(xp):
|
2316
|
+
out = xp.asarray(np.zeros(data.shape, bool))
|
2317
|
+
func(data, struct, output=out, axes=axes, **kwargs)
|
2318
|
+
else:
|
2319
|
+
# inplace output= is unsupported by JAX
|
2320
|
+
out = func(data, struct, axes=axes, **kwargs)
|
2321
|
+
xp_assert_close(out, expected)
|
2322
|
+
|
2323
|
+
def test_grey_erosion01(self, xp):
|
2324
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2325
|
+
[7, 6, 9, 3, 5],
|
2326
|
+
[5, 8, 3, 7, 1]])
|
2327
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2328
|
+
output = ndimage.grey_erosion(array, footprint=footprint)
|
2329
|
+
assert_array_almost_equal(output,
|
2330
|
+
xp.asarray([[2, 2, 1, 1, 1],
|
2331
|
+
[2, 3, 1, 3, 1],
|
2332
|
+
[5, 5, 3, 3, 1]]))
|
2333
|
+
|
2334
|
+
@skip_xp_backends("jax.numpy", reason="output=array requires buffer view")
|
2335
|
+
@skip_xp_backends("dask.array", reason="output=array requires buffer view")
|
2336
|
+
@xfail_xp_backends("cupy", reason="https://github.com/cupy/cupy/issues/8398")
|
2337
|
+
def test_grey_erosion01_overlap(self, xp):
|
2338
|
+
|
2339
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2340
|
+
[7, 6, 9, 3, 5],
|
2341
|
+
[5, 8, 3, 7, 1]])
|
2342
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2343
|
+
ndimage.grey_erosion(array, footprint=footprint, output=array)
|
2344
|
+
assert_array_almost_equal(array,
|
2345
|
+
xp.asarray([[2, 2, 1, 1, 1],
|
2346
|
+
[2, 3, 1, 3, 1],
|
2347
|
+
[5, 5, 3, 3, 1]])
|
2348
|
+
)
|
2349
|
+
|
2350
|
+
def test_grey_erosion02(self, xp):
|
2351
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2352
|
+
[7, 6, 9, 3, 5],
|
2353
|
+
[5, 8, 3, 7, 1]])
|
2354
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2355
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2356
|
+
output = ndimage.grey_erosion(array, footprint=footprint,
|
2357
|
+
structure=structure)
|
2358
|
+
assert_array_almost_equal(output,
|
2359
|
+
xp.asarray([[2, 2, 1, 1, 1],
|
2360
|
+
[2, 3, 1, 3, 1],
|
2361
|
+
[5, 5, 3, 3, 1]])
|
2362
|
+
)
|
2363
|
+
|
2364
|
+
def test_grey_erosion03(self, xp):
|
2365
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2366
|
+
[7, 6, 9, 3, 5],
|
2367
|
+
[5, 8, 3, 7, 1]])
|
2368
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2369
|
+
structure = xp.asarray([[1, 1, 1], [1, 1, 1]])
|
2370
|
+
output = ndimage.grey_erosion(array, footprint=footprint,
|
2371
|
+
structure=structure)
|
2372
|
+
assert_array_almost_equal(output,
|
2373
|
+
xp.asarray([[1, 1, 0, 0, 0],
|
2374
|
+
[1, 2, 0, 2, 0],
|
2375
|
+
[4, 4, 2, 2, 0]])
|
2376
|
+
)
|
2377
|
+
|
2378
|
+
def test_grey_dilation01(self, xp):
|
2379
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2380
|
+
[7, 6, 9, 3, 5],
|
2381
|
+
[5, 8, 3, 7, 1]])
|
2382
|
+
footprint = xp.asarray([[0, 1, 1], [1, 0, 1]])
|
2383
|
+
output = ndimage.grey_dilation(array, footprint=footprint)
|
2384
|
+
assert_array_almost_equal(output,
|
2385
|
+
xp.asarray([[7, 7, 9, 9, 5],
|
2386
|
+
[7, 9, 8, 9, 7],
|
2387
|
+
[8, 8, 8, 7, 7]]),
|
2388
|
+
)
|
2389
|
+
|
2390
|
+
def test_grey_dilation02(self, xp):
|
2391
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2392
|
+
[7, 6, 9, 3, 5],
|
2393
|
+
[5, 8, 3, 7, 1]])
|
2394
|
+
footprint = xp.asarray([[0, 1, 1], [1, 0, 1]])
|
2395
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2396
|
+
output = ndimage.grey_dilation(array, footprint=footprint,
|
2397
|
+
structure=structure)
|
2398
|
+
assert_array_almost_equal(output,
|
2399
|
+
xp.asarray([[7, 7, 9, 9, 5],
|
2400
|
+
[7, 9, 8, 9, 7],
|
2401
|
+
[8, 8, 8, 7, 7]]),
|
2402
|
+
)
|
2403
|
+
|
2404
|
+
def test_grey_dilation03(self, xp):
|
2405
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2406
|
+
[7, 6, 9, 3, 5],
|
2407
|
+
[5, 8, 3, 7, 1]])
|
2408
|
+
footprint = xp.asarray([[0, 1, 1], [1, 0, 1]])
|
2409
|
+
structure = xp.asarray([[1, 1, 1], [1, 1, 1]])
|
2410
|
+
output = ndimage.grey_dilation(array, footprint=footprint,
|
2411
|
+
structure=structure)
|
2412
|
+
assert_array_almost_equal(output,
|
2413
|
+
xp.asarray([[8, 8, 10, 10, 6],
|
2414
|
+
[8, 10, 9, 10, 8],
|
2415
|
+
[9, 9, 9, 8, 8]]),
|
2416
|
+
)
|
2417
|
+
|
2418
|
+
def test_grey_opening01(self, xp):
|
2419
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2420
|
+
[7, 6, 9, 3, 5],
|
2421
|
+
[5, 8, 3, 7, 1]])
|
2422
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2423
|
+
tmp = ndimage.grey_erosion(array, footprint=footprint)
|
2424
|
+
expected = ndimage.grey_dilation(tmp, footprint=footprint)
|
2425
|
+
output = ndimage.grey_opening(array, footprint=footprint)
|
2426
|
+
assert_array_almost_equal(output, expected)
|
2427
|
+
|
2428
|
+
def test_grey_opening02(self, xp):
|
2429
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2430
|
+
[7, 6, 9, 3, 5],
|
2431
|
+
[5, 8, 3, 7, 1]])
|
2432
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2433
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2434
|
+
tmp = ndimage.grey_erosion(array, footprint=footprint,
|
2435
|
+
structure=structure)
|
2436
|
+
expected = ndimage.grey_dilation(tmp, footprint=footprint,
|
2437
|
+
structure=structure)
|
2438
|
+
output = ndimage.grey_opening(array, footprint=footprint,
|
2439
|
+
structure=structure)
|
2440
|
+
assert_array_almost_equal(output, expected)
|
2441
|
+
|
2442
|
+
def test_grey_closing01(self, xp):
|
2443
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2444
|
+
[7, 6, 9, 3, 5],
|
2445
|
+
[5, 8, 3, 7, 1]])
|
2446
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2447
|
+
tmp = ndimage.grey_dilation(array, footprint=footprint)
|
2448
|
+
expected = ndimage.grey_erosion(tmp, footprint=footprint)
|
2449
|
+
output = ndimage.grey_closing(array, footprint=footprint)
|
2450
|
+
assert_array_almost_equal(output, expected)
|
2451
|
+
|
2452
|
+
def test_grey_closing02(self, xp):
|
2453
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2454
|
+
[7, 6, 9, 3, 5],
|
2455
|
+
[5, 8, 3, 7, 1]])
|
2456
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2457
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2458
|
+
tmp = ndimage.grey_dilation(array, footprint=footprint,
|
2459
|
+
structure=structure)
|
2460
|
+
expected = ndimage.grey_erosion(tmp, footprint=footprint,
|
2461
|
+
structure=structure)
|
2462
|
+
output = ndimage.grey_closing(array, footprint=footprint,
|
2463
|
+
structure=structure)
|
2464
|
+
assert_array_almost_equal(output, expected)
|
2465
|
+
|
2466
|
+
@skip_xp_backends(np_only=True, reason='output= arrays are numpy-specific')
|
2467
|
+
def test_morphological_gradient01(self, xp):
|
2468
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2469
|
+
[7, 6, 9, 3, 5],
|
2470
|
+
[5, 8, 3, 7, 1]])
|
2471
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2472
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2473
|
+
tmp1 = ndimage.grey_dilation(array, footprint=footprint,
|
2474
|
+
structure=structure)
|
2475
|
+
tmp2 = ndimage.grey_erosion(array, footprint=footprint,
|
2476
|
+
structure=structure)
|
2477
|
+
expected = tmp1 - tmp2
|
2478
|
+
output = xp.zeros(array.shape, dtype=array.dtype)
|
2479
|
+
ndimage.morphological_gradient(array, footprint=footprint,
|
2480
|
+
structure=structure, output=output)
|
2481
|
+
assert_array_almost_equal(output, expected)
|
2482
|
+
|
2483
|
+
def test_morphological_gradient02(self, xp):
|
2484
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2485
|
+
[7, 6, 9, 3, 5],
|
2486
|
+
[5, 8, 3, 7, 1]])
|
2487
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2488
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2489
|
+
tmp1 = ndimage.grey_dilation(array, footprint=footprint,
|
2490
|
+
structure=structure)
|
2491
|
+
tmp2 = ndimage.grey_erosion(array, footprint=footprint,
|
2492
|
+
structure=structure)
|
2493
|
+
expected = tmp1 - tmp2
|
2494
|
+
output = ndimage.morphological_gradient(array, footprint=footprint,
|
2495
|
+
structure=structure)
|
2496
|
+
assert_array_almost_equal(output, expected)
|
2497
|
+
|
2498
|
+
@skip_xp_backends(np_only=True, reason='output= arrays are numpy-specific')
|
2499
|
+
def test_morphological_laplace01(self, xp):
|
2500
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2501
|
+
[7, 6, 9, 3, 5],
|
2502
|
+
[5, 8, 3, 7, 1]])
|
2503
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2504
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2505
|
+
tmp1 = ndimage.grey_dilation(array, footprint=footprint,
|
2506
|
+
structure=structure)
|
2507
|
+
tmp2 = ndimage.grey_erosion(array, footprint=footprint,
|
2508
|
+
structure=structure)
|
2509
|
+
expected = tmp1 + tmp2 - 2 * array
|
2510
|
+
output = xp.zeros(array.shape, dtype=array.dtype)
|
2511
|
+
ndimage.morphological_laplace(array, footprint=footprint,
|
2512
|
+
structure=structure, output=output)
|
2513
|
+
assert_array_almost_equal(output, expected)
|
2514
|
+
|
2515
|
+
def test_morphological_laplace02(self, xp):
|
2516
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2517
|
+
[7, 6, 9, 3, 5],
|
2518
|
+
[5, 8, 3, 7, 1]])
|
2519
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2520
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2521
|
+
tmp1 = ndimage.grey_dilation(array, footprint=footprint,
|
2522
|
+
structure=structure)
|
2523
|
+
tmp2 = ndimage.grey_erosion(array, footprint=footprint,
|
2524
|
+
structure=structure)
|
2525
|
+
expected = tmp1 + tmp2 - 2 * array
|
2526
|
+
output = ndimage.morphological_laplace(array, footprint=footprint,
|
2527
|
+
structure=structure)
|
2528
|
+
assert_array_almost_equal(output, expected)
|
2529
|
+
|
2530
|
+
@skip_xp_backends("jax.numpy", reason="output=array requires buffer view")
|
2531
|
+
@skip_xp_backends("dask.array", reason="output=array requires buffer view")
|
2532
|
+
def test_white_tophat01(self, xp):
|
2533
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2534
|
+
[7, 6, 9, 3, 5],
|
2535
|
+
[5, 8, 3, 7, 1]])
|
2536
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2537
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2538
|
+
tmp = ndimage.grey_opening(array, footprint=footprint,
|
2539
|
+
structure=structure)
|
2540
|
+
expected = array - tmp
|
2541
|
+
output = xp.zeros(array.shape, dtype=array.dtype)
|
2542
|
+
ndimage.white_tophat(array, footprint=footprint,
|
2543
|
+
structure=structure, output=output)
|
2544
|
+
assert_array_almost_equal(output, expected)
|
2545
|
+
|
2546
|
+
def test_white_tophat02(self, xp):
|
2547
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2548
|
+
[7, 6, 9, 3, 5],
|
2549
|
+
[5, 8, 3, 7, 1]])
|
2550
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2551
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2552
|
+
tmp = ndimage.grey_opening(array, footprint=footprint,
|
2553
|
+
structure=structure)
|
2554
|
+
expected = array - tmp
|
2555
|
+
output = ndimage.white_tophat(array, footprint=footprint,
|
2556
|
+
structure=structure)
|
2557
|
+
assert_array_almost_equal(output, expected)
|
2558
|
+
|
2559
|
+
@xfail_xp_backends('cupy', reason="cupy#8399")
|
2560
|
+
def test_white_tophat03(self, xp):
|
2561
|
+
|
2562
|
+
array = np.asarray([[1, 0, 0, 0, 0, 0, 0],
|
2563
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2564
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2565
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2566
|
+
[0, 1, 1, 1, 0, 1, 0],
|
2567
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2568
|
+
[0, 0, 0, 0, 0, 0, 1]], dtype=bool)
|
2569
|
+
array = xp.asarray(array)
|
2570
|
+
structure = np.ones((3, 3), dtype=bool)
|
2571
|
+
structure = xp.asarray(structure)
|
2572
|
+
expected = np.asarray([[0, 1, 1, 0, 0, 0, 0],
|
2573
|
+
[1, 0, 0, 1, 1, 1, 0],
|
2574
|
+
[1, 0, 0, 1, 1, 1, 0],
|
2575
|
+
[0, 1, 1, 0, 0, 0, 1],
|
2576
|
+
[0, 1, 1, 0, 1, 0, 1],
|
2577
|
+
[0, 1, 1, 0, 0, 0, 1],
|
2578
|
+
[0, 0, 0, 1, 1, 1, 1]], dtype=bool)
|
2579
|
+
expected = xp.asarray(expected)
|
2580
|
+
|
2581
|
+
output = ndimage.white_tophat(array, structure=structure)
|
2582
|
+
xp_assert_equal(output, expected)
|
2583
|
+
|
2584
|
+
@skip_xp_backends("jax.numpy", reason="output=array requires buffer view")
|
2585
|
+
@skip_xp_backends("dask.array", reason="output=array requires buffer view")
|
2586
|
+
def test_white_tophat04(self, xp):
|
2587
|
+
array = np.eye(5, dtype=bool)
|
2588
|
+
structure = np.ones((3, 3), dtype=bool)
|
2589
|
+
|
2590
|
+
array = xp.asarray(array)
|
2591
|
+
structure = xp.asarray(structure)
|
2592
|
+
|
2593
|
+
# Check that type mismatch is properly handled
|
2594
|
+
output = xp.empty_like(array, dtype=xp.float64)
|
2595
|
+
ndimage.white_tophat(array, structure=structure, output=output)
|
2596
|
+
|
2597
|
+
@skip_xp_backends("jax.numpy", reason="output=array requires buffer view")
|
2598
|
+
@skip_xp_backends("dask.array", reason="output=array requires buffer view")
|
2599
|
+
def test_black_tophat01(self, xp):
|
2600
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2601
|
+
[7, 6, 9, 3, 5],
|
2602
|
+
[5, 8, 3, 7, 1]])
|
2603
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2604
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2605
|
+
tmp = ndimage.grey_closing(array, footprint=footprint,
|
2606
|
+
structure=structure)
|
2607
|
+
expected = tmp - array
|
2608
|
+
output = xp.zeros(array.shape, dtype=array.dtype)
|
2609
|
+
ndimage.black_tophat(array, footprint=footprint,
|
2610
|
+
structure=structure, output=output)
|
2611
|
+
assert_array_almost_equal(output, expected)
|
2612
|
+
|
2613
|
+
def test_black_tophat02(self, xp):
|
2614
|
+
array = xp.asarray([[3, 2, 5, 1, 4],
|
2615
|
+
[7, 6, 9, 3, 5],
|
2616
|
+
[5, 8, 3, 7, 1]])
|
2617
|
+
footprint = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2618
|
+
structure = xp.asarray([[0, 0, 0], [0, 0, 0]])
|
2619
|
+
tmp = ndimage.grey_closing(array, footprint=footprint,
|
2620
|
+
structure=structure)
|
2621
|
+
expected = tmp - array
|
2622
|
+
output = ndimage.black_tophat(array, footprint=footprint,
|
2623
|
+
structure=structure)
|
2624
|
+
assert_array_almost_equal(output, expected)
|
2625
|
+
|
2626
|
+
@xfail_xp_backends('cupy', reason="cupy/cupy#8399")
|
2627
|
+
def test_black_tophat03(self, xp):
|
2628
|
+
|
2629
|
+
array = np.asarray([[1, 0, 0, 0, 0, 0, 0],
|
2630
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2631
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2632
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2633
|
+
[0, 1, 1, 1, 0, 1, 0],
|
2634
|
+
[0, 1, 1, 1, 1, 1, 0],
|
2635
|
+
[0, 0, 0, 0, 0, 0, 1]], dtype=bool)
|
2636
|
+
array = xp.asarray(array)
|
2637
|
+
structure = np.ones((3, 3), dtype=bool)
|
2638
|
+
structure = xp.asarray(structure)
|
2639
|
+
expected = np.asarray([[0, 1, 1, 1, 1, 1, 1],
|
2640
|
+
[1, 0, 0, 0, 0, 0, 1],
|
2641
|
+
[1, 0, 0, 0, 0, 0, 1],
|
2642
|
+
[1, 0, 0, 0, 0, 0, 1],
|
2643
|
+
[1, 0, 0, 0, 1, 0, 1],
|
2644
|
+
[1, 0, 0, 0, 0, 0, 1],
|
2645
|
+
[1, 1, 1, 1, 1, 1, 0]], dtype=bool)
|
2646
|
+
expected = xp.asarray(expected)
|
2647
|
+
|
2648
|
+
output = ndimage.black_tophat(array, structure=structure)
|
2649
|
+
xp_assert_equal(output, expected)
|
2650
|
+
|
2651
|
+
@skip_xp_backends("jax.numpy", reason="output=array requires buffer view")
|
2652
|
+
@skip_xp_backends("dask.array", reason="output=array requires buffer view")
|
2653
|
+
def test_black_tophat04(self, xp):
|
2654
|
+
array = xp.asarray(np.eye(5, dtype=bool))
|
2655
|
+
structure = xp.asarray(np.ones((3, 3), dtype=bool))
|
2656
|
+
|
2657
|
+
# Check that type mismatch is properly handled
|
2658
|
+
output = xp.empty_like(array, dtype=xp.float64)
|
2659
|
+
ndimage.black_tophat(array, structure=structure, output=output)
|
2660
|
+
|
2661
|
+
@skip_xp_backends(cpu_only=True)
|
2662
|
+
@skip_xp_backends(
|
2663
|
+
"cupy", reason="these filters do not yet have axes support in CuPy")
|
2664
|
+
@skip_xp_backends(
|
2665
|
+
"jax.numpy", reason="these filters are not implemented in JAX.numpy")
|
2666
|
+
@pytest.mark.parametrize('origin', [(0, 0), (-1, 0)])
|
2667
|
+
@pytest.mark.parametrize('expand_axis', [0, 1, 2])
|
2668
|
+
@pytest.mark.parametrize('mode', ['reflect', 'constant', 'nearest',
|
2669
|
+
'mirror', 'wrap'])
|
2670
|
+
@pytest.mark.parametrize('footprint_mode', ['size', 'footprint',
|
2671
|
+
'structure'])
|
2672
|
+
@pytest.mark.parametrize('func_name', ["grey_erosion",
|
2673
|
+
"grey_dilation",
|
2674
|
+
"grey_opening",
|
2675
|
+
"grey_closing",
|
2676
|
+
"morphological_laplace",
|
2677
|
+
"morphological_gradient",
|
2678
|
+
"white_tophat",
|
2679
|
+
"black_tophat"])
|
2680
|
+
def test_grey_axes(self, xp, func_name, expand_axis, origin, footprint_mode,
|
2681
|
+
mode):
|
2682
|
+
|
2683
|
+
data = xp.asarray([[0, 0, 0, 1, 0, 0, 0],
|
2684
|
+
[0, 0, 0, 4, 0, 0, 0],
|
2685
|
+
[0, 0, 2, 1, 0, 2, 0],
|
2686
|
+
[0, 3, 0, 6, 5, 0, 1],
|
2687
|
+
[0, 4, 5, 3, 3, 4, 0],
|
2688
|
+
[0, 0, 9, 3, 0, 0, 0],
|
2689
|
+
[0, 0, 0, 2, 0, 0, 0]])
|
2690
|
+
kwargs = dict(origin=origin, mode=mode)
|
2691
|
+
if footprint_mode == 'size':
|
2692
|
+
kwargs['size'] = (2, 3)
|
2693
|
+
else:
|
2694
|
+
kwargs['footprint'] = xp.asarray([[1, 0, 1], [1, 1, 0]])
|
2695
|
+
if footprint_mode == 'structure':
|
2696
|
+
kwargs['structure'] = xp.ones_like(kwargs['footprint'])
|
2697
|
+
func = getattr(ndimage, func_name)
|
2698
|
+
expected = func(data, **kwargs)
|
2699
|
+
|
2700
|
+
# replicate data and expected result along a new axis
|
2701
|
+
n_reps = 5
|
2702
|
+
expected = xp.stack([expected] * n_reps, axis=expand_axis)
|
2703
|
+
data = xp.stack([data] * n_reps, axis=expand_axis)
|
2704
|
+
|
2705
|
+
# filter all axes except expand_axis
|
2706
|
+
axes = [0, 1, 2]
|
2707
|
+
axes.remove(expand_axis)
|
2708
|
+
|
2709
|
+
if is_numpy(xp) or is_cupy(xp):
|
2710
|
+
out = xp.zeros(expected.shape, dtype=expected.dtype)
|
2711
|
+
func(data, output=out, axes=axes, **kwargs)
|
2712
|
+
else:
|
2713
|
+
# inplace output= is unsupported by JAX
|
2714
|
+
out = func(data, axes=axes, **kwargs)
|
2715
|
+
xp_assert_close(out, expected)
|
2716
|
+
|
2717
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
2718
|
+
reason="inplace output= is numpy-specific")
|
2719
|
+
@pytest.mark.parametrize('dtype', types)
|
2720
|
+
def test_hit_or_miss01(self, dtype, xp):
|
2721
|
+
dtype = getattr(xp, dtype)
|
2722
|
+
struct = [[0, 1, 0],
|
2723
|
+
[1, 1, 1],
|
2724
|
+
[0, 1, 0]]
|
2725
|
+
struct = xp.asarray(struct)
|
2726
|
+
expected = [[0, 0, 0, 0, 0],
|
2727
|
+
[0, 1, 0, 0, 0],
|
2728
|
+
[0, 0, 0, 0, 0],
|
2729
|
+
[0, 0, 0, 0, 0],
|
2730
|
+
[0, 0, 0, 0, 0],
|
2731
|
+
[0, 0, 0, 0, 0],
|
2732
|
+
[0, 0, 0, 0, 0],
|
2733
|
+
[0, 0, 0, 0, 0]]
|
2734
|
+
expected = xp.asarray(expected)
|
2735
|
+
data = xp.asarray([[0, 1, 0, 0, 0],
|
2736
|
+
[1, 1, 1, 0, 0],
|
2737
|
+
[0, 1, 0, 1, 1],
|
2738
|
+
[0, 0, 1, 1, 1],
|
2739
|
+
[0, 1, 1, 1, 0],
|
2740
|
+
[0, 1, 1, 1, 1],
|
2741
|
+
[0, 1, 1, 1, 1],
|
2742
|
+
[0, 0, 0, 0, 0]], dtype=dtype)
|
2743
|
+
out = xp.asarray(np.zeros(data.shape, dtype=bool))
|
2744
|
+
ndimage.binary_hit_or_miss(data, struct, output=out)
|
2745
|
+
assert_array_almost_equal(out, expected)
|
2746
|
+
|
2747
|
+
@pytest.mark.parametrize('dtype', types)
|
2748
|
+
def test_hit_or_miss02(self, dtype, xp):
|
2749
|
+
dtype = getattr(xp, dtype)
|
2750
|
+
struct = [[0, 1, 0],
|
2751
|
+
[1, 1, 1],
|
2752
|
+
[0, 1, 0]]
|
2753
|
+
expected = [[0, 0, 0, 0, 0, 0, 0, 0],
|
2754
|
+
[0, 1, 0, 0, 0, 0, 0, 0],
|
2755
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2756
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2757
|
+
struct = xp.asarray(struct)
|
2758
|
+
expected = xp.asarray(expected)
|
2759
|
+
data = xp.asarray([[0, 1, 0, 0, 1, 1, 1, 0],
|
2760
|
+
[1, 1, 1, 0, 0, 1, 0, 0],
|
2761
|
+
[0, 1, 0, 1, 1, 1, 1, 0],
|
2762
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2763
|
+
out = ndimage.binary_hit_or_miss(data, struct)
|
2764
|
+
assert_array_almost_equal(out, expected)
|
2765
|
+
|
2766
|
+
@pytest.mark.parametrize('dtype', types)
|
2767
|
+
def test_hit_or_miss03(self, dtype, xp):
|
2768
|
+
dtype = getattr(xp, dtype)
|
2769
|
+
struct1 = [[0, 0, 0],
|
2770
|
+
[1, 1, 1],
|
2771
|
+
[0, 0, 0]]
|
2772
|
+
struct2 = [[1, 1, 1],
|
2773
|
+
[0, 0, 0],
|
2774
|
+
[1, 1, 1]]
|
2775
|
+
expected = [[0, 0, 0, 0, 0, 1, 0, 0],
|
2776
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2777
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2778
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2779
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2780
|
+
[0, 0, 0, 0, 0, 0, 0, 0],
|
2781
|
+
[0, 0, 1, 0, 0, 0, 0, 0],
|
2782
|
+
[0, 0, 0, 0, 0, 0, 0, 0]]
|
2783
|
+
struct1 = xp.asarray(struct1)
|
2784
|
+
struct2 = xp.asarray(struct2)
|
2785
|
+
expected = xp.asarray(expected)
|
2786
|
+
data = xp.asarray([[0, 1, 0, 0, 1, 1, 1, 0],
|
2787
|
+
[1, 1, 1, 0, 0, 0, 0, 0],
|
2788
|
+
[0, 1, 0, 1, 1, 1, 1, 0],
|
2789
|
+
[0, 0, 1, 1, 1, 1, 1, 0],
|
2790
|
+
[0, 1, 1, 1, 0, 1, 1, 0],
|
2791
|
+
[0, 0, 0, 0, 1, 1, 1, 0],
|
2792
|
+
[0, 1, 1, 1, 1, 1, 1, 0],
|
2793
|
+
[0, 0, 0, 0, 0, 0, 0, 0]], dtype=dtype)
|
2794
|
+
out = ndimage.binary_hit_or_miss(data, struct1, struct2)
|
2795
|
+
assert_array_almost_equal(out, expected)
|
2796
|
+
|
2797
|
+
|
2798
|
+
class TestDilateFix:
|
2799
|
+
|
2800
|
+
# pytest's setup_method seems to clash with the autouse `xp` fixture
|
2801
|
+
# so call _setup manually from all methods
|
2802
|
+
def _setup(self, xp):
|
2803
|
+
# dilation related setup
|
2804
|
+
self.array = xp.asarray([[0, 0, 0, 0, 0],
|
2805
|
+
[0, 0, 0, 0, 0],
|
2806
|
+
[0, 0, 0, 1, 0],
|
2807
|
+
[0, 0, 1, 1, 0],
|
2808
|
+
[0, 0, 0, 0, 0]], dtype=xp.uint8)
|
2809
|
+
|
2810
|
+
self.sq3x3 = xp.ones((3, 3))
|
2811
|
+
dilated3x3 = ndimage.binary_dilation(self.array, structure=self.sq3x3)
|
2812
|
+
|
2813
|
+
if is_numpy(xp):
|
2814
|
+
self.dilated3x3 = dilated3x3.view(xp.uint8)
|
2815
|
+
else:
|
2816
|
+
self.dilated3x3 = xp.astype(dilated3x3, xp.uint8)
|
2817
|
+
|
2818
|
+
def test_dilation_square_structure(self, xp):
|
2819
|
+
self._setup(xp)
|
2820
|
+
result = ndimage.grey_dilation(self.array, structure=self.sq3x3)
|
2821
|
+
# +1 accounts for difference between grey and binary dilation
|
2822
|
+
assert_array_almost_equal(result, self.dilated3x3 + 1)
|
2823
|
+
|
2824
|
+
def test_dilation_scalar_size(self, xp):
|
2825
|
+
self._setup(xp)
|
2826
|
+
result = ndimage.grey_dilation(self.array, size=3)
|
2827
|
+
assert_array_almost_equal(result, self.dilated3x3)
|
2828
|
+
|
2829
|
+
|
2830
|
+
class TestBinaryOpeningClosing:
|
2831
|
+
|
2832
|
+
def _setup(self, xp):
|
2833
|
+
a = np.zeros((5, 5), dtype=bool)
|
2834
|
+
a[1:4, 1:4] = True
|
2835
|
+
a[4, 4] = True
|
2836
|
+
self.array = xp.asarray(a)
|
2837
|
+
self.sq3x3 = xp.ones((3, 3))
|
2838
|
+
self.opened_old = ndimage.binary_opening(self.array, self.sq3x3,
|
2839
|
+
1, None, 0)
|
2840
|
+
self.closed_old = ndimage.binary_closing(self.array, self.sq3x3,
|
2841
|
+
1, None, 0)
|
2842
|
+
|
2843
|
+
def test_opening_new_arguments(self, xp):
|
2844
|
+
self._setup(xp)
|
2845
|
+
opened_new = ndimage.binary_opening(self.array, self.sq3x3, 1, None,
|
2846
|
+
0, None, 0, False)
|
2847
|
+
xp_assert_equal(opened_new, self.opened_old)
|
2848
|
+
|
2849
|
+
def test_closing_new_arguments(self, xp):
|
2850
|
+
self._setup(xp)
|
2851
|
+
closed_new = ndimage.binary_closing(self.array, self.sq3x3, 1, None,
|
2852
|
+
0, None, 0, False)
|
2853
|
+
xp_assert_equal(closed_new, self.closed_old)
|
2854
|
+
|
2855
|
+
|
2856
|
+
def test_binary_erosion_noninteger_iterations(xp):
|
2857
|
+
# regression test for gh-9905, gh-9909: ValueError for
|
2858
|
+
# non integer iterations
|
2859
|
+
data = xp.ones([1])
|
2860
|
+
assert_raises(TypeError, ndimage.binary_erosion, data, iterations=0.5)
|
2861
|
+
assert_raises(TypeError, ndimage.binary_erosion, data, iterations=1.5)
|
2862
|
+
|
2863
|
+
|
2864
|
+
def test_binary_dilation_noninteger_iterations(xp):
|
2865
|
+
# regression test for gh-9905, gh-9909: ValueError for
|
2866
|
+
# non integer iterations
|
2867
|
+
data = xp.ones([1])
|
2868
|
+
assert_raises(TypeError, ndimage.binary_dilation, data, iterations=0.5)
|
2869
|
+
assert_raises(TypeError, ndimage.binary_dilation, data, iterations=1.5)
|
2870
|
+
|
2871
|
+
|
2872
|
+
def test_binary_opening_noninteger_iterations(xp):
|
2873
|
+
# regression test for gh-9905, gh-9909: ValueError for
|
2874
|
+
# non integer iterations
|
2875
|
+
data = xp.ones([1])
|
2876
|
+
assert_raises(TypeError, ndimage.binary_opening, data, iterations=0.5)
|
2877
|
+
assert_raises(TypeError, ndimage.binary_opening, data, iterations=1.5)
|
2878
|
+
|
2879
|
+
|
2880
|
+
def test_binary_closing_noninteger_iterations(xp):
|
2881
|
+
# regression test for gh-9905, gh-9909: ValueError for
|
2882
|
+
# non integer iterations
|
2883
|
+
data = xp.ones([1])
|
2884
|
+
assert_raises(TypeError, ndimage.binary_closing, data, iterations=0.5)
|
2885
|
+
assert_raises(TypeError, ndimage.binary_closing, data, iterations=1.5)
|
2886
|
+
|
2887
|
+
|
2888
|
+
@xfail_xp_backends(
|
2889
|
+
"cupy", reason="CuPy: NotImplementedError: only brute_force iteration"
|
2890
|
+
)
|
2891
|
+
def test_binary_closing_noninteger_brute_force_passes_when_true(xp):
|
2892
|
+
# regression test for gh-9905, gh-9909: ValueError for non integer iterations
|
2893
|
+
data = xp.ones([1])
|
2894
|
+
xp_assert_equal(ndimage.binary_erosion(data, iterations=2, brute_force=1.5),
|
2895
|
+
ndimage.binary_erosion(data, iterations=2, brute_force=bool(1.5))
|
2896
|
+
)
|
2897
|
+
xp_assert_equal(ndimage.binary_erosion(data, iterations=2, brute_force=0.0),
|
2898
|
+
ndimage.binary_erosion(data, iterations=2, brute_force=bool(0.0))
|
2899
|
+
)
|
2900
|
+
|
2901
|
+
|
2902
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
2903
|
+
reason="inplace output= is numpy-specific")
|
2904
|
+
@xfail_xp_backends("cupy", reason="NotImplementedError: only brute_force iteration")
|
2905
|
+
@pytest.mark.parametrize(
|
2906
|
+
'function',
|
2907
|
+
['binary_erosion', 'binary_dilation', 'binary_opening', 'binary_closing'],
|
2908
|
+
)
|
2909
|
+
@pytest.mark.parametrize('iterations', [1, 5])
|
2910
|
+
@pytest.mark.parametrize('brute_force', [False, True])
|
2911
|
+
def test_binary_input_as_output(function, iterations, brute_force, xp):
|
2912
|
+
rstate = np.random.RandomState(123)
|
2913
|
+
data = rstate.randint(low=0, high=2, size=100).astype(bool)
|
2914
|
+
data = xp.asarray(data)
|
2915
|
+
ndi_func = getattr(ndimage, function)
|
2916
|
+
|
2917
|
+
# input data is not modified
|
2918
|
+
data_orig = data.copy()
|
2919
|
+
expected = ndi_func(data, brute_force=brute_force, iterations=iterations)
|
2920
|
+
xp_assert_equal(data, data_orig)
|
2921
|
+
|
2922
|
+
# data should now contain the expected result
|
2923
|
+
ndi_func(data, brute_force=brute_force, iterations=iterations, output=data)
|
2924
|
+
xp_assert_equal(data, expected)
|
2925
|
+
|
2926
|
+
|
2927
|
+
@skip_xp_backends(np_only=True, exceptions=["cupy"],
|
2928
|
+
reason="inplace output= is numpy-specific")
|
2929
|
+
def test_binary_hit_or_miss_input_as_output(xp):
|
2930
|
+
rstate = np.random.RandomState(123)
|
2931
|
+
data = rstate.randint(low=0, high=2, size=100).astype(bool)
|
2932
|
+
data = xp.asarray(data)
|
2933
|
+
|
2934
|
+
# input data is not modified
|
2935
|
+
data_orig = data.copy()
|
2936
|
+
expected = ndimage.binary_hit_or_miss(data)
|
2937
|
+
xp_assert_equal(data, data_orig)
|
2938
|
+
|
2939
|
+
# data should now contain the expected result
|
2940
|
+
ndimage.binary_hit_or_miss(data, output=data)
|
2941
|
+
xp_assert_equal(data, expected)
|
2942
|
+
|
2943
|
+
|
2944
|
+
@xfail_xp_backends("cupy",
|
2945
|
+
reason="CuPy does not have distance_transform_cdt")
|
2946
|
+
def test_distance_transform_cdt_invalid_metric(xp):
|
2947
|
+
msg = 'invalid metric provided'
|
2948
|
+
with pytest.raises(ValueError, match=msg):
|
2949
|
+
ndimage.distance_transform_cdt(xp.ones((5, 5)),
|
2950
|
+
metric="garbage")
|