scipy 1.16.2__cp313-cp313-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp313-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp313-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp313-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp313-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp313-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp313-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp313-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp313-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp313-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp313-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp313-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp313-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp313-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp313-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp313-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp313-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp313-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp313-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp313-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp313-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp313-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp313-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp313-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp313-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp313-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp313-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp313-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp313-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp313-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp313-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp313-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp313-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp313-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp313-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp313-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp313-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp313-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp313-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp313-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp313-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp313-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp313-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp313-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp313-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp313-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp313-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp313-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp313-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp313-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp313-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
  322. scipy/interpolate/rbf.py +18 -0
  323. scipy/interpolate/tests/__init__.py +0 -0
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  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
scipy/sparse/_base.py ADDED
@@ -0,0 +1,1613 @@
1
+ """Base class for sparse matrices"""
2
+
3
+ from warnings import warn
4
+ import math
5
+ import numpy as np
6
+ import operator
7
+
8
+ from ._sputils import (asmatrix, check_reshape_kwargs, check_shape,
9
+ get_sum_dtype, isdense, isscalarlike, _todata,
10
+ matrix, validateaxis, getdtype, is_pydata_spmatrix)
11
+ from scipy._lib._sparse import SparseABC, issparse
12
+
13
+ from ._matrix import spmatrix
14
+
15
+ __all__ = ['isspmatrix', 'issparse', 'sparray',
16
+ 'SparseWarning', 'SparseEfficiencyWarning']
17
+
18
+
19
+ class SparseWarning(Warning):
20
+ """General warning for :mod:`scipy.sparse`."""
21
+ pass
22
+
23
+
24
+ class SparseFormatWarning(SparseWarning):
25
+ pass
26
+
27
+
28
+ class SparseEfficiencyWarning(SparseWarning):
29
+ """The warning emitted when the operation is
30
+ inefficient for sparse matrices.
31
+ """
32
+ pass
33
+
34
+
35
+ # The formats that we might potentially understand.
36
+ _formats = {'csc': [0, "Compressed Sparse Column"],
37
+ 'csr': [1, "Compressed Sparse Row"],
38
+ 'dok': [2, "Dictionary Of Keys"],
39
+ 'lil': [3, "List of Lists"],
40
+ 'dod': [4, "Dictionary of Dictionaries"],
41
+ 'sss': [5, "Symmetric Sparse Skyline"],
42
+ 'coo': [6, "COOrdinate"],
43
+ 'lba': [7, "Linpack BAnded"],
44
+ 'egd': [8, "Ellpack-itpack Generalized Diagonal"],
45
+ 'dia': [9, "DIAgonal"],
46
+ 'bsr': [10, "Block Sparse Row"],
47
+ 'msr': [11, "Modified compressed Sparse Row"],
48
+ 'bsc': [12, "Block Sparse Column"],
49
+ 'msc': [13, "Modified compressed Sparse Column"],
50
+ 'ssk': [14, "Symmetric SKyline"],
51
+ 'nsk': [15, "Nonsymmetric SKyline"],
52
+ 'jad': [16, "JAgged Diagonal"],
53
+ 'uss': [17, "Unsymmetric Sparse Skyline"],
54
+ 'vbr': [18, "Variable Block Row"],
55
+ 'und': [19, "Undefined"]
56
+ }
57
+
58
+
59
+ # These univariate ufuncs preserve zeros.
60
+ _ufuncs_with_fixed_point_at_zero = frozenset([
61
+ np.sin, np.tan, np.arcsin, np.arctan, np.sinh, np.tanh, np.arcsinh,
62
+ np.arctanh, np.rint, np.sign, np.expm1, np.log1p, np.deg2rad,
63
+ np.rad2deg, np.floor, np.ceil, np.trunc, np.sqrt])
64
+
65
+
66
+ MAXPRINT = 50
67
+
68
+
69
+ # helper dicts to manipulate comparison operators
70
+ # We negate operators (with warning) when all implicit values would be True
71
+ op_neg = {operator.eq: operator.ne, operator.ne: operator.eq,
72
+ operator.lt: operator.ge, operator.ge: operator.lt,
73
+ operator.gt: operator.le, operator.le: operator.gt}
74
+
75
+
76
+ # We use symbolic version of operators in warning messages.
77
+ op_sym = {operator.eq: '==', operator.ge: '>=', operator.le: '<=',
78
+ operator.ne: '!=', operator.gt: '>', operator.lt: '<'}
79
+
80
+
81
+ # `_spbase` is a subclass of `SparseABC`.
82
+ # This allows other submodules to check for instances of sparse subclasses
83
+ # via `scipy._lib._sparse.issparse`, without introducing
84
+ # an import dependency on `scipy.sparse`.
85
+ class _spbase(SparseABC):
86
+ """ This class provides a base class for all sparse arrays. It
87
+ cannot be instantiated. Most of the work is provided by subclasses.
88
+ """
89
+
90
+ __array_priority__ = 10.1
91
+ _format = 'und' # undefined
92
+ _allow_nd = (2,)
93
+
94
+ @property
95
+ def ndim(self) -> int:
96
+ return len(self._shape)
97
+
98
+ @property
99
+ def _shape_as_2d(self):
100
+ s = self._shape
101
+ return (1, s[-1]) if len(s) == 1 else s
102
+
103
+ @property
104
+ def _bsr_container(self):
105
+ from ._bsr import bsr_array
106
+ return bsr_array
107
+
108
+ @property
109
+ def _coo_container(self):
110
+ from ._coo import coo_array
111
+ return coo_array
112
+
113
+ @property
114
+ def _csc_container(self):
115
+ from ._csc import csc_array
116
+ return csc_array
117
+
118
+ @property
119
+ def _csr_container(self):
120
+ from ._csr import csr_array
121
+ return csr_array
122
+
123
+ @property
124
+ def _dia_container(self):
125
+ from ._dia import dia_array
126
+ return dia_array
127
+
128
+ @property
129
+ def _dok_container(self):
130
+ from ._dok import dok_array
131
+ return dok_array
132
+
133
+ @property
134
+ def _lil_container(self):
135
+ from ._lil import lil_array
136
+ return lil_array
137
+
138
+ def __init__(self, arg1, *, maxprint=None):
139
+ self._shape = None
140
+ if self.__class__.__name__ == '_spbase':
141
+ raise ValueError("This class is not intended"
142
+ " to be instantiated directly.")
143
+ if isinstance(self, sparray) and np.isscalar(arg1):
144
+ raise ValueError(
145
+ "scipy sparse array classes do not support instantiation from a scalar"
146
+ )
147
+ self.maxprint = MAXPRINT if maxprint is None else maxprint
148
+
149
+ @property
150
+ def shape(self):
151
+ return self._shape
152
+
153
+ def reshape(self, *args, **kwargs):
154
+ """reshape(self, shape, order='C', copy=False)
155
+
156
+ Gives a new shape to a sparse array/matrix without changing its data.
157
+
158
+ Parameters
159
+ ----------
160
+ shape : tuple of ints
161
+ The new shape should be compatible with the original shape.
162
+ order : {'C', 'F'}, optional
163
+ Read the elements using this index order. 'C' means to read and
164
+ write the elements using C-like index order; e.g., read entire first
165
+ row, then second row, etc. 'F' means to read and write the elements
166
+ using Fortran-like index order; e.g., read entire first column, then
167
+ second column, etc.
168
+ copy : bool, optional
169
+ Indicates whether or not attributes of self should be copied
170
+ whenever possible. The degree to which attributes are copied varies
171
+ depending on the type of sparse array being used.
172
+
173
+ Returns
174
+ -------
175
+ reshaped : sparse array/matrix
176
+ A sparse array/matrix with the given `shape`, not necessarily of the same
177
+ format as the current object.
178
+
179
+ See Also
180
+ --------
181
+ numpy.reshape : NumPy's implementation of 'reshape' for ndarrays
182
+ """
183
+ # If the shape already matches, don't bother doing an actual reshape
184
+ # Otherwise, the default is to convert to COO and use its reshape
185
+ # Don't restrict ndim on this first call. That happens in constructor
186
+ shape = check_shape(args, self.shape, allow_nd=range(1, 65))
187
+ order, copy = check_reshape_kwargs(kwargs)
188
+ if shape == self.shape:
189
+ if copy:
190
+ return self.copy()
191
+ else:
192
+ return self
193
+
194
+ return self.tocoo(copy=copy).reshape(shape, order=order, copy=False)
195
+
196
+ def resize(self, shape):
197
+ """Resize the array/matrix in-place to dimensions given by ``shape``
198
+
199
+ Any elements that lie within the new shape will remain at the same
200
+ indices, while non-zero elements lying outside the new shape are
201
+ removed.
202
+
203
+ Parameters
204
+ ----------
205
+ shape : (int, int)
206
+ number of rows and columns in the new array/matrix
207
+
208
+ Notes
209
+ -----
210
+ The semantics are not identical to `numpy.ndarray.resize` or
211
+ `numpy.resize`. Here, the same data will be maintained at each index
212
+ before and after reshape, if that index is within the new bounds. In
213
+ numpy, resizing maintains contiguity of the array, moving elements
214
+ around in the logical array but not within a flattened representation.
215
+
216
+ We give no guarantees about whether the underlying data attributes
217
+ (arrays, etc.) will be modified in place or replaced with new objects.
218
+ """
219
+ # As an inplace operation, this requires implementation in each format.
220
+ raise NotImplementedError(
221
+ f'{type(self).__name__}.resize is not implemented')
222
+
223
+ def astype(self, dtype, casting='unsafe', copy=True):
224
+ """Cast the array/matrix elements to a specified type.
225
+
226
+ Parameters
227
+ ----------
228
+ dtype : string or numpy dtype
229
+ Typecode or data-type to which to cast the data.
230
+ casting : {'no', 'equiv', 'safe', 'same_kind', 'unsafe'}, optional
231
+ Controls what kind of data casting may occur.
232
+ Defaults to 'unsafe' for backwards compatibility.
233
+ 'no' means the data types should not be cast at all.
234
+ 'equiv' means only byte-order changes are allowed.
235
+ 'safe' means only casts which can preserve values are allowed.
236
+ 'same_kind' means only safe casts or casts within a kind,
237
+ like float64 to float32, are allowed.
238
+ 'unsafe' means any data conversions may be done.
239
+ copy : bool, optional
240
+ If `copy` is `False`, the result might share some memory with this
241
+ array/matrix. If `copy` is `True`, it is guaranteed that the result and
242
+ this array/matrix do not share any memory.
243
+ """
244
+
245
+ dtype = getdtype(dtype)
246
+ if self.dtype != dtype:
247
+ return self.tocsr().astype(
248
+ dtype, casting=casting, copy=copy).asformat(self.format)
249
+ elif copy:
250
+ return self.copy()
251
+ else:
252
+ return self
253
+
254
+ @classmethod
255
+ def _ascontainer(cls, X, **kwargs):
256
+ if issubclass(cls, sparray):
257
+ return np.asarray(X, **kwargs)
258
+ else:
259
+ return asmatrix(X, **kwargs)
260
+
261
+ @classmethod
262
+ def _container(cls, X, **kwargs):
263
+ if issubclass(cls, sparray):
264
+ return np.array(X, **kwargs)
265
+ else:
266
+ return matrix(X, **kwargs)
267
+
268
+ def _asfptype(self):
269
+ """Upcast array to a floating point format (if necessary)"""
270
+
271
+ fp_types = ['f', 'd', 'F', 'D']
272
+
273
+ if self.dtype.char in fp_types:
274
+ return self
275
+ else:
276
+ for fp_type in fp_types:
277
+ if self.dtype <= np.dtype(fp_type):
278
+ return self.astype(fp_type)
279
+
280
+ raise TypeError(
281
+ f'cannot upcast [{self.dtype.name}] to a floating point format'
282
+ )
283
+
284
+ def __iter__(self):
285
+ for r in range(self.shape[0]):
286
+ yield self[r]
287
+
288
+ def _getmaxprint(self):
289
+ """Maximum number of elements to display when printed."""
290
+ return self.maxprint
291
+
292
+ def count_nonzero(self, axis=None):
293
+ """Number of non-zero entries, equivalent to
294
+
295
+ np.count_nonzero(a.toarray(), axis=axis)
296
+
297
+ Unlike the nnz property, which return the number of stored
298
+ entries (the length of the data attribute), this method counts the
299
+ actual number of non-zero entries in data.
300
+
301
+ Duplicate entries are summed before counting.
302
+
303
+ Parameters
304
+ ----------
305
+ axis : {-2, -1, 0, 1, None} optional
306
+ Count nonzeros for the whole array, or along a specified axis.
307
+
308
+ .. versionadded:: 1.15.0
309
+
310
+ Returns
311
+ -------
312
+ numpy array
313
+ A reduced array (no axis `axis`) holding the number of nonzero values
314
+ for each of the indices of the nonaxis dimensions.
315
+
316
+ Notes
317
+ -----
318
+ If you want to count nonzero and explicit zero stored values (e.g. nnz)
319
+ along an axis, two fast idioms are provided by `numpy` functions for the
320
+ common CSR, CSC, COO formats.
321
+
322
+ For the major axis in CSR (rows) and CSC (cols) use `np.diff`:
323
+
324
+ >>> import numpy as np
325
+ >>> import scipy as sp
326
+ >>> A = sp.sparse.csr_array([[4, 5, 0], [7, 0, 0]])
327
+ >>> major_axis_stored_values = np.diff(A.indptr) # -> np.array([2, 1])
328
+
329
+ For the minor axis in CSR (cols) and CSC (rows) use `numpy.bincount` with
330
+ minlength ``A.shape[1]`` for CSR and ``A.shape[0]`` for CSC:
331
+
332
+ >>> csr_minor_stored_values = np.bincount(A.indices, minlength=A.shape[1])
333
+
334
+ For COO, use the minor axis approach for either `axis`:
335
+
336
+ >>> A = A.tocoo()
337
+ >>> coo_axis0_stored_values = np.bincount(A.coords[0], minlength=A.shape[1])
338
+ >>> coo_axis1_stored_values = np.bincount(A.coords[1], minlength=A.shape[0])
339
+
340
+ Examples
341
+ --------
342
+
343
+ >>> A = sp.sparse.csr_array([[4, 5, 0], [7, 0, 0]])
344
+ >>> A.count_nonzero(axis=0)
345
+ array([2, 1, 0])
346
+ """
347
+ clsname = self.__class__.__name__
348
+ raise NotImplementedError(f"count_nonzero not implemented for {clsname}.")
349
+
350
+ def _getnnz(self, axis=None):
351
+ """Number of stored values, including explicit zeros.
352
+
353
+ Parameters
354
+ ----------
355
+ axis : {-2, -1, 0, 1, None} optional
356
+ Report stored values for the whole array, or along a specified axis.
357
+
358
+ See also
359
+ --------
360
+ count_nonzero : Number of non-zero entries
361
+ """
362
+ clsname = self.__class__.__name__
363
+ raise NotImplementedError(f"getnnz not implemented for {clsname}.")
364
+
365
+ @property
366
+ def nnz(self) -> int:
367
+ """Number of stored values, including explicit zeros.
368
+
369
+ See also
370
+ --------
371
+ count_nonzero : Number of non-zero entries
372
+ """
373
+ return self._getnnz()
374
+
375
+ @property
376
+ def size(self) -> int:
377
+ """Number of stored values.
378
+
379
+ See also
380
+ --------
381
+ count_nonzero : Number of non-zero values.
382
+ """
383
+ return self._getnnz()
384
+
385
+ @property
386
+ def format(self) -> str:
387
+ """Format string for matrix."""
388
+ return self._format
389
+
390
+ @property
391
+ def T(self):
392
+ """Transpose."""
393
+ return self.transpose()
394
+
395
+ @property
396
+ def real(self):
397
+ return self._real()
398
+
399
+ @property
400
+ def imag(self):
401
+ return self._imag()
402
+
403
+ def __repr__(self):
404
+ _, format_name = _formats[self.format]
405
+ sparse_cls = 'array' if isinstance(self, sparray) else 'matrix'
406
+ return (
407
+ f"<{format_name} sparse {sparse_cls} of dtype '{self.dtype}'\n"
408
+ f"\twith {self.nnz} stored elements and shape {self.shape}>"
409
+ )
410
+
411
+ def __str__(self):
412
+ maxprint = self._getmaxprint()
413
+
414
+ A = self.tocoo()
415
+
416
+ # helper function, outputs "(i,j) v"
417
+ def tostr(coords, data):
418
+ pairs = zip(zip(*(c.tolist() for c in coords)), data)
419
+ return '\n'.join(f' {idx}\t{val}' for idx, val in pairs)
420
+
421
+ out = repr(self)
422
+ if self.nnz == 0:
423
+ return out
424
+
425
+ out += '\n Coords\tValues\n'
426
+ if self.nnz > maxprint:
427
+ half = maxprint // 2
428
+ out += tostr(tuple(c[:half] for c in A.coords), A.data[:half])
429
+ out += "\n :\t:\n"
430
+ half = maxprint - half
431
+ out += tostr(tuple(c[-half:] for c in A.coords), A.data[-half:])
432
+ else:
433
+ out += tostr(A.coords, A.data)
434
+
435
+ return out
436
+
437
+ def __bool__(self): # Simple -- other ideas?
438
+ if self.shape == (1, 1):
439
+ return self.nnz != 0
440
+ else:
441
+ raise ValueError("The truth value of an array with more than one "
442
+ "element is ambiguous. Use a.any() or a.all().")
443
+ __nonzero__ = __bool__
444
+
445
+ # What should len(sparse) return? For consistency with dense matrices,
446
+ # perhaps it should be the number of rows? But for some uses the number of
447
+ # non-zeros is more important. For now, raise an exception!
448
+ def __len__(self):
449
+ raise TypeError("sparse array length is ambiguous; use getnnz()"
450
+ " or shape[0]")
451
+
452
+ def asformat(self, format, copy=False):
453
+ """Return this array/matrix in the passed format.
454
+
455
+ Parameters
456
+ ----------
457
+ format : {str, None}
458
+ The desired sparse format ("csr", "csc", "lil", "dok", "array", ...)
459
+ or None for no conversion.
460
+ copy : bool, optional
461
+ If True, the result is guaranteed to not share data with self.
462
+
463
+ Returns
464
+ -------
465
+ A : This array/matrix in the passed format.
466
+ """
467
+ if format is None or format == self.format:
468
+ if copy:
469
+ return self.copy()
470
+ else:
471
+ return self
472
+ else:
473
+ try:
474
+ convert_method = getattr(self, 'to' + format)
475
+ except AttributeError as e:
476
+ raise ValueError(f'Format {format} is unknown.') from e
477
+
478
+ # Forward the copy kwarg, if it's accepted.
479
+ try:
480
+ return convert_method(copy=copy)
481
+ except TypeError:
482
+ return convert_method()
483
+
484
+ ###################################################################
485
+ # NOTE: All arithmetic operations use csr_matrix by default.
486
+ # Therefore a new sparse array format just needs to define a
487
+ # .tocsr() method to provide arithmetic support. Any of these
488
+ # methods can be overridden for efficiency.
489
+ ####################################################################
490
+
491
+ def multiply(self, other):
492
+ """Element-wise multiplication by another array/matrix."""
493
+ if isscalarlike(other):
494
+ return self._mul_scalar(other)
495
+
496
+ if self.ndim < 3:
497
+ try:
498
+ return self._multiply_2d_with_broadcasting(other)
499
+ except AttributeError:
500
+ return self.tocsr()._multiply_2d_with_broadcasting(other)
501
+
502
+ if not (issparse(other) or isdense(other)):
503
+ # If it's a list or whatever, treat it like an array
504
+ other_a = np.asanyarray(other)
505
+ if other_a.ndim == 0 and other_a.dtype == np.object_:
506
+ # numpy creates a 0d object array if all else fails.
507
+ # Not interpretable as an array; return NotImplemented so
508
+ # other's __rmul__ can kick in if that's implemented.
509
+ return NotImplemented
510
+ # Allow custom sparse class indicated by attr sparse gh-6520
511
+ try:
512
+ other.shape
513
+ except AttributeError:
514
+ other = other_a
515
+
516
+ if self.shape != other.shape:
517
+ raise ValueError("inconsistent shapes: >2D multiply() does not yet "
518
+ "support broadcasting")
519
+
520
+ # self is >2D so must be COO
521
+ if isdense(other):
522
+ data = np.multiply(self.data, other[self.coords])
523
+ result = self.copy()
524
+ result.data = data.view(np.ndarray).ravel()
525
+ return result
526
+
527
+ elif issparse(other):
528
+ csr_self = self.reshape(1, -1).tocsr()
529
+ csr_other = other.reshape(1, -1).tocsr()
530
+ return csr_self._binopt(csr_other, '_elmul_').reshape(self.shape)
531
+
532
+ else:
533
+ # Not scalar, dense or sparse. Return NotImplemented so that
534
+ # other's __rmul__ can kick in if that's implemented.
535
+ return NotImplemented
536
+
537
+ def _maximum_minimum(self, other, np_op):
538
+ if not (issparse(other) or isdense(other) or isscalarlike(other)):
539
+ # If it's a list or whatever, treat it like an array
540
+ other_a = np.asanyarray(other)
541
+ if other_a.ndim == 0 and other_a.dtype == np.object_:
542
+ # numpy creates a 0d object array if all else fails.
543
+ # We don't know how to handle it either.
544
+ raise NotImplementedError('maximum or minimum with an unrecognized '
545
+ 'array type is not supported')
546
+ # Allow custom sparse class indicated by attr sparse gh-6520
547
+ try:
548
+ other.shape
549
+ except AttributeError:
550
+ other = other_a
551
+
552
+ if isscalarlike(other):
553
+ if np_op(0, other):
554
+ pos_neg = 'positive' if np_op == np.maximum else 'negative'
555
+ warn(f"Taking {np_op.__name__} with a {pos_neg} number results in a"
556
+ " dense matrix.", SparseEfficiencyWarning, stacklevel=3)
557
+ return self.__class__(np_op(self.toarray(), other))
558
+ else:
559
+ csr_self = (self if self.ndim < 3 else self.reshape(1, -1)).tocsr()
560
+ result = csr_self._scalar_binopt(other, np_op)
561
+ return result if self.ndim < 3 else result.tocoo().reshape(self.shape)
562
+ elif isdense(other):
563
+ return np_op(self.todense(), other)
564
+ elif issparse(other):
565
+ if self.shape != other.shape:
566
+ raise ValueError(f"inconsistent shapes {self.shape=} {other.shape=}")
567
+ if self.ndim < 3: # shape is same so other.ndim < 3
568
+ return self.tocsr()._binopt(other, f'_{np_op.__name__}_')
569
+ csr_self = self.reshape(1, -1).tocsr()
570
+ csr_other = other.reshape(1, -1).tocsr()
571
+ result = csr_self._binopt(csr_other, f'_{np_op.__name__}_')
572
+ return result.tocoo().reshape(self.shape)
573
+ else:
574
+ raise ValueError("Operands not compatible.")
575
+
576
+ def maximum(self, other):
577
+ """Element-wise maximum between this and another array/matrix."""
578
+ return self._maximum_minimum(other, np.maximum)
579
+
580
+ def minimum(self, other):
581
+ """Element-wise minimum between this and another array/matrix."""
582
+ return self._maximum_minimum(other, np.minimum)
583
+
584
+ def dot(self, other):
585
+ """Ordinary dot product
586
+
587
+ Examples
588
+ --------
589
+ >>> import numpy as np
590
+ >>> from scipy.sparse import csr_array
591
+ >>> A = csr_array([[1, 2, 0], [0, 0, 3], [4, 0, 5]])
592
+ >>> v = np.array([1, 0, -1])
593
+ >>> A.dot(v)
594
+ array([ 1, -3, -1], dtype=int64)
595
+
596
+ """
597
+ if np.isscalar(other):
598
+ return self * other
599
+ else:
600
+ return self @ other
601
+
602
+ def power(self, n, dtype=None):
603
+ """Element-wise power."""
604
+ return self.tocsr().power(n, dtype=dtype)
605
+
606
+ def _broadcast_to(self, shape, copy=False):
607
+ if self.shape == shape:
608
+ return self.copy() if copy else self
609
+ else:
610
+ return self.tocsr()._broadcast_to(shape, copy)
611
+
612
+ def _comparison(self, other, op):
613
+ # We convert to CSR format and use methods _binopt or _scalar_binopt
614
+ # If ndim>2 we reshape to 2D, compare and then reshape back to nD
615
+ if not (issparse(other) or isdense(other) or isscalarlike(other)):
616
+ if is_pydata_spmatrix(other):
617
+ # cannot compare with pydata other, but it might compare with us.
618
+ return NotImplemented
619
+ # If it's a list or whatever, treat it like an array
620
+ other_a = np.asanyarray(other)
621
+ if other_a.ndim == 0 and other_a.dtype == np.object_:
622
+ # numpy creates a 0d object array if all else fails.
623
+ # Not interpretable as an array; return NotImplemented so
624
+ # other's dunder methods can kick in if implemented.
625
+ return NotImplemented
626
+ # Allow custom sparse class indicated by attr sparse gh-6520
627
+ try:
628
+ other.shape
629
+ except AttributeError:
630
+ other = other_a
631
+
632
+ if isscalarlike(other):
633
+ if not op(0, other):
634
+ if np.isnan(other): # op is not `ne`, so results are all False.
635
+ return self.__class__(self.shape, dtype=np.bool_)
636
+ else:
637
+ csr_self = (self if self.ndim < 3 else self.reshape(1, -1)).tocsr()
638
+ res = csr_self._scalar_binopt(other, op)
639
+ return res if self.ndim < 3 else res.tocoo().reshape(self.shape)
640
+ else:
641
+ warn(f"Comparing a sparse matrix with {other} using {op_sym[op]} "
642
+ f"is inefficient. Try using {op_sym[op_neg[op]]} instead.",
643
+ SparseEfficiencyWarning, stacklevel=3)
644
+ if np.isnan(other):
645
+ # op is `ne` cuz op(0, other) and isnan(other). Return all True.
646
+ return self.__class__(np.ones(self.shape, dtype=np.bool_))
647
+
648
+ # op is eq, le, or ge. Use negated op and then negate.
649
+ csr_self = (self if self.ndim < 3 else self.reshape(1, -1)).tocsr()
650
+ inv = csr_self._scalar_binopt(other, op_neg[op])
651
+ all_true = csr_self.__class__(np.ones(csr_self.shape, dtype=np.bool_))
652
+ result = all_true - inv
653
+ return result if self.ndim < 3 else result.tocoo().reshape(self.shape)
654
+
655
+ elif isdense(other):
656
+ return op(self.todense(), other)
657
+
658
+ elif issparse(other):
659
+ # TODO sparse broadcasting
660
+ if self.shape != other.shape:
661
+ # eq and ne return True or False instead of an array when the shapes
662
+ # don't match. Numpy doesn't do this. Is this what we want?
663
+ if op in (operator.eq, operator.ne):
664
+ return op is operator.ne
665
+ raise ValueError("inconsistent shape")
666
+
667
+ csr_self = (self if self.ndim < 3 else self.reshape(1, -1)).tocsr()
668
+ csr_other = (other if other.ndim < 3 else other.reshape(1, -1)).tocsr()
669
+ if not op(0, 0):
670
+ result = csr_self._binopt(csr_other, f'_{op.__name__}_')
671
+ return result if self.ndim < 3 else result.tocoo().reshape(self.shape)
672
+ else:
673
+ # result will not be sparse. Use negated op and then negate.
674
+ warn(f"Comparing two sparse matrices using {op_sym[op]} "
675
+ f"is inefficient. Try using {op_sym[op_neg[op]]} instead.",
676
+ SparseEfficiencyWarning, stacklevel=3)
677
+ inv = csr_self._binopt(csr_other, f'_{op_neg[op].__name__}_')
678
+ all_true = csr_self.__class__(np.ones(csr_self.shape, dtype=np.bool_))
679
+ result = all_true - inv
680
+ return result if self.ndim < 3 else result.tocoo().reshape(self.shape)
681
+ else:
682
+ # cannot compare with other, but it might compare with us.
683
+ return NotImplemented
684
+
685
+ def __eq__(self, other):
686
+ return self._comparison(other, operator.eq)
687
+
688
+ def __ne__(self, other):
689
+ return self._comparison(other, operator.ne)
690
+
691
+ def __lt__(self, other):
692
+ return self._comparison(other, operator.lt)
693
+
694
+ def __gt__(self, other):
695
+ return self._comparison(other, operator.gt)
696
+
697
+ def __le__(self, other):
698
+ return self._comparison(other, operator.le)
699
+
700
+ def __ge__(self, other):
701
+ return self._comparison(other, operator.ge)
702
+
703
+ def __abs__(self):
704
+ return abs(self.tocsr())
705
+
706
+ def __round__(self, ndigits=0):
707
+ return round(self.tocsr(), ndigits=ndigits)
708
+
709
+ def _add_sparse(self, other):
710
+ return self.tocsr()._add_sparse(other)
711
+
712
+ def _add_dense(self, other):
713
+ return self.tocoo()._add_dense(other)
714
+
715
+ def _sub_sparse(self, other):
716
+ return self.tocsr()._sub_sparse(other)
717
+
718
+ def _sub_dense(self, other):
719
+ return self.todense() - other
720
+
721
+ def _rsub_dense(self, other):
722
+ # note: this can't be replaced by other + (-self) for unsigned types
723
+ return other - self.todense()
724
+
725
+ def __add__(self, other): # self + other
726
+ if isscalarlike(other):
727
+ if other == 0:
728
+ return self.copy()
729
+ # Now we would add this scalar to every element.
730
+ raise NotImplementedError('adding a nonzero scalar to a '
731
+ 'sparse array is not supported')
732
+ elif issparse(other):
733
+ if other.shape != self.shape:
734
+ raise ValueError("inconsistent shapes")
735
+ return self._add_sparse(other)
736
+ elif isdense(other):
737
+ other = np.broadcast_to(other, self.shape)
738
+ return self._add_dense(other)
739
+ else:
740
+ return NotImplemented
741
+
742
+ def __radd__(self,other): # other + self
743
+ return self.__add__(other)
744
+
745
+ def __sub__(self, other): # self - other
746
+ if isscalarlike(other):
747
+ if other == 0:
748
+ return self.copy()
749
+ raise NotImplementedError('subtracting a nonzero scalar from a '
750
+ 'sparse array is not supported')
751
+ elif issparse(other):
752
+ if other.shape != self.shape:
753
+ raise ValueError("inconsistent shapes")
754
+ return self._sub_sparse(other)
755
+ elif isdense(other):
756
+ other = np.broadcast_to(other, self.shape)
757
+ return self._sub_dense(other)
758
+ else:
759
+ return NotImplemented
760
+
761
+ def __rsub__(self,other): # other - self
762
+ if isscalarlike(other):
763
+ if other == 0:
764
+ return -self.copy()
765
+ raise NotImplementedError('subtracting a sparse array from a '
766
+ 'nonzero scalar is not supported')
767
+ elif isdense(other):
768
+ other = np.broadcast_to(other, self.shape)
769
+ return self._rsub_dense(other)
770
+ else:
771
+ return NotImplemented
772
+
773
+ def _matmul_dispatch(self, other):
774
+ """np.array-like matmul & `np.matrix`-like mul, i.e. `dot` or `NotImplemented`
775
+
776
+ interpret other and call one of the following
777
+ self._mul_scalar()
778
+ self._matmul_vector()
779
+ self._matmul_multivector()
780
+ self._matmul_sparse()
781
+ """
782
+ # This method has to be different from `__matmul__` because it is also
783
+ # called by sparse matrix classes.
784
+
785
+ # Currently matrix multiplication is only supported
786
+ # for 2D arrays. Hence we unpacked and use only the
787
+ # two last axes' lengths.
788
+ M, N = self._shape_as_2d
789
+
790
+ if other.__class__ is np.ndarray:
791
+ # Fast path for the most common case
792
+ if other.shape == (N,):
793
+ return self._matmul_vector(other)
794
+ elif other.shape == (N, 1):
795
+ result = self._matmul_vector(other.ravel())
796
+ if self.ndim == 1:
797
+ return result.reshape(1)
798
+ return result.reshape(M, 1)
799
+ elif other.ndim == 2 and other.shape[0] == N:
800
+ return self._matmul_multivector(other)
801
+
802
+ if isscalarlike(other):
803
+ # scalar value
804
+ return self._mul_scalar(other)
805
+
806
+ err_prefix = "matmul: dimension mismatch with signature"
807
+ if issparse(other):
808
+ if N != other.shape[0]:
809
+ raise ValueError(
810
+ f"{err_prefix} (n,k={N}),(k={other.shape[0]},m)->(n,m)"
811
+ )
812
+ return self._matmul_sparse(other)
813
+
814
+ # If it's a list or whatever, treat it like an array
815
+ other_a = np.asanyarray(other)
816
+ if other_a.ndim == 0 and other_a.dtype == np.object_:
817
+ # numpy creates a 0d object array if all else fails.
818
+ # Not interpretable as an array; return NotImplemented so that
819
+ # other's __rmatmul__ can kick in if that's implemented.
820
+ return NotImplemented
821
+ # Allow custom sparse class indicated by attr sparse gh-6520
822
+ try:
823
+ other.shape
824
+ except AttributeError:
825
+ other = other_a
826
+
827
+ if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1:
828
+ # dense row or column vector
829
+ if other.shape[0] != N:
830
+ raise ValueError(
831
+ f"{err_prefix} (n,k={N}),(k={other.shape[0]},1?)->(n,1?)"
832
+ )
833
+
834
+ result = self._matmul_vector(np.ravel(other))
835
+
836
+ if isinstance(other, np.matrix):
837
+ result = self._ascontainer(result)
838
+
839
+ if other.ndim == 2 and other.shape[1] == 1:
840
+ # If 'other' was an (nx1) column vector, reshape the result
841
+ if self.ndim == 1:
842
+ result = result.reshape(1)
843
+ else:
844
+ result = result.reshape(-1, 1)
845
+
846
+ return result
847
+
848
+ elif other.ndim == 2:
849
+ ##
850
+ # dense 2D array or matrix ("multivector")
851
+
852
+ if other.shape[0] != N:
853
+ raise ValueError(
854
+ f"{err_prefix} (n,k={N}),(k={other.shape[0]},m)->(n,m)"
855
+ )
856
+
857
+ result = self._matmul_multivector(np.asarray(other))
858
+
859
+ if isinstance(other, np.matrix):
860
+ result = self._ascontainer(result)
861
+
862
+ return result
863
+
864
+ else:
865
+ raise ValueError('could not interpret dimensions')
866
+
867
+ def __mul__(self, other):
868
+ return self.multiply(other)
869
+
870
+ def __rmul__(self, other): # other * self
871
+ return self.multiply(other)
872
+
873
+ # by default, use CSR for __mul__ handlers
874
+ def _mul_scalar(self, other):
875
+ return self.tocsr()._mul_scalar(other)
876
+
877
+ def _matmul_vector(self, other):
878
+ return self.tocsr()._matmul_vector(other)
879
+
880
+ def _matmul_multivector(self, other):
881
+ return self.tocsr()._matmul_multivector(other)
882
+
883
+ def _matmul_sparse(self, other):
884
+ return self.tocsr()._matmul_sparse(other)
885
+
886
+ def _rmatmul_dispatch(self, other):
887
+ if isscalarlike(other):
888
+ return self._mul_scalar(other)
889
+ else:
890
+ # Don't use asarray unless we have to
891
+ try:
892
+ tr = other.transpose()
893
+ except AttributeError:
894
+ tr = np.asarray(other).transpose()
895
+ ret = self.transpose()._matmul_dispatch(tr)
896
+ if ret is NotImplemented:
897
+ return NotImplemented
898
+ return ret.transpose()
899
+
900
+ #######################
901
+ # matmul (@) operator #
902
+ #######################
903
+
904
+ def __matmul__(self, other):
905
+ if isscalarlike(other):
906
+ raise ValueError("Scalar operands are not allowed, "
907
+ "use '*' instead")
908
+ return self._matmul_dispatch(other)
909
+
910
+ def __rmatmul__(self, other):
911
+ if isscalarlike(other):
912
+ raise ValueError("Scalar operands are not allowed, "
913
+ "use '*' instead")
914
+ return self._rmatmul_dispatch(other)
915
+
916
+ ####################
917
+ # Other Arithmetic #
918
+ ####################
919
+
920
+ def _divide(self, other, true_divide=False, rdivide=False):
921
+ # Do we need to continue to support true_divide and divide?
922
+ if not (issparse(other) or isdense(other) or isscalarlike(other)):
923
+ # If it's a list or whatever, treat it like an array
924
+ other_a = np.asanyarray(other)
925
+ if other_a.ndim == 0 and other_a.dtype == np.object_:
926
+ # numpy creates a 0d object array if all else fails.
927
+ # Not interpretable as an array; return NotImplemented so that
928
+ # other's __rdiv__ can kick in if that's implemented.
929
+ return NotImplemented
930
+ # Allow custom sparse class indicated by attr sparse gh-6520
931
+ try:
932
+ other.shape
933
+ except AttributeError:
934
+ other = other_a
935
+
936
+ if isscalarlike(other):
937
+ if rdivide:
938
+ if true_divide:
939
+ return np.true_divide(other, self.todense())
940
+ else:
941
+ return np.divide(other, self.todense())
942
+
943
+ if true_divide and np.can_cast(self.dtype, np.float64):
944
+ return self.astype(np.float64)._mul_scalar(1./other)
945
+ else:
946
+ r = self._mul_scalar(1./other)
947
+
948
+ scalar_dtype = np.asarray(other).dtype
949
+ if (np.issubdtype(self.dtype, np.integer) and
950
+ np.issubdtype(scalar_dtype, np.integer)):
951
+ return r.astype(self.dtype)
952
+ else:
953
+ return r
954
+
955
+ elif isdense(other):
956
+ if not rdivide:
957
+ if true_divide:
958
+ recip = np.true_divide(1., other)
959
+ else:
960
+ recip = np.divide(1., other)
961
+ return self.multiply(recip)
962
+ else:
963
+ if true_divide:
964
+ return np.true_divide(other, self.todense())
965
+ else:
966
+ return np.divide(other, self.todense())
967
+ elif issparse(other):
968
+ if rdivide:
969
+ return other._divide(self, true_divide, rdivide=False)
970
+
971
+ csr_self = (self if self.ndim < 3 else self.reshape(1, -1)).tocsr()
972
+ csr_other = (other if self.ndim < 3 else other.reshape(1, -1)).tocsr()
973
+ if true_divide and np.can_cast(self.dtype, np.float64):
974
+ result = csr_self.astype(np.float64)._divide_sparse(csr_other)
975
+ else:
976
+ result = csr_self._divide_sparse(csr_other)
977
+ return result if self.ndim < 3 else result.reshape(self.shape)
978
+ else:
979
+ # not scalar, dense or sparse. Return NotImplemented so
980
+ # other's __rdiv__ can kick in if that's implemented.
981
+ return NotImplemented
982
+
983
+ def __truediv__(self, other):
984
+ return self._divide(other, true_divide=True)
985
+
986
+ def __div__(self, other):
987
+ # Always do true division
988
+ return self._divide(other, true_divide=True)
989
+
990
+ def __rtruediv__(self, other):
991
+ # Implementing this as the inverse would be too magical -- bail out
992
+ return NotImplemented
993
+
994
+ def __rdiv__(self, other):
995
+ # Implementing this as the inverse would be too magical -- bail out
996
+ return NotImplemented
997
+
998
+ def __neg__(self):
999
+ return -self.tocsr()
1000
+
1001
+ def __iadd__(self, other):
1002
+ return NotImplemented
1003
+
1004
+ def __isub__(self, other):
1005
+ return NotImplemented
1006
+
1007
+ def __imul__(self, other):
1008
+ return NotImplemented
1009
+
1010
+ def __idiv__(self, other):
1011
+ return self.__itruediv__(other)
1012
+
1013
+ def __itruediv__(self, other):
1014
+ return NotImplemented
1015
+
1016
+ def __pow__(self, *args, **kwargs):
1017
+ return self.power(*args, **kwargs)
1018
+
1019
+ def transpose(self, axes=None, copy=False):
1020
+ """
1021
+ Reverses the dimensions of the sparse array/matrix.
1022
+
1023
+ Parameters
1024
+ ----------
1025
+ axes : None, optional
1026
+ This argument is in the signature *solely* for NumPy
1027
+ compatibility reasons. Do not pass in anything except
1028
+ for the default value.
1029
+ copy : bool, optional
1030
+ Indicates whether or not attributes of `self` should be
1031
+ copied whenever possible. The degree to which attributes
1032
+ are copied varies depending on the type of sparse array/matrix
1033
+ being used.
1034
+
1035
+ Returns
1036
+ -------
1037
+ p : `self` with the dimensions reversed.
1038
+
1039
+ Notes
1040
+ -----
1041
+ If `self` is a `csr_array` or a `csc_array`, then this will return a
1042
+ `csc_array` or a `csr_array`, respectively.
1043
+
1044
+ See Also
1045
+ --------
1046
+ numpy.transpose : NumPy's implementation of 'transpose' for ndarrays
1047
+ """
1048
+ return self.tocsr(copy=copy).transpose(axes=axes, copy=False)
1049
+
1050
+ def conjugate(self, copy=True):
1051
+ """Element-wise complex conjugation.
1052
+
1053
+ If the array/matrix is of non-complex data type and `copy` is False,
1054
+ this method does nothing and the data is not copied.
1055
+
1056
+ Parameters
1057
+ ----------
1058
+ copy : bool, optional
1059
+ If True, the result is guaranteed to not share data with self.
1060
+
1061
+ Returns
1062
+ -------
1063
+ A : The element-wise complex conjugate.
1064
+
1065
+ """
1066
+ if np.issubdtype(self.dtype, np.complexfloating):
1067
+ return self.tocsr(copy=copy).conjugate(copy=False)
1068
+ elif copy:
1069
+ return self.copy()
1070
+ else:
1071
+ return self
1072
+
1073
+ def conj(self, copy=True):
1074
+ return self.conjugate(copy=copy)
1075
+
1076
+ conj.__doc__ = conjugate.__doc__
1077
+
1078
+ def _real(self):
1079
+ return self.tocsr()._real()
1080
+
1081
+ def _imag(self):
1082
+ return self.tocsr()._imag()
1083
+
1084
+ def nonzero(self):
1085
+ """Nonzero indices of the array/matrix.
1086
+
1087
+ Returns a tuple of arrays (row,col) containing the indices
1088
+ of the non-zero elements of the array.
1089
+
1090
+ Examples
1091
+ --------
1092
+ >>> from scipy.sparse import csr_array
1093
+ >>> A = csr_array([[1, 2, 0], [0, 0, 3], [4, 0, 5]])
1094
+ >>> A.nonzero()
1095
+ (array([0, 0, 1, 2, 2], dtype=int32), array([0, 1, 2, 0, 2], dtype=int32))
1096
+
1097
+ """
1098
+
1099
+ # convert to COOrdinate format
1100
+ A = self.tocoo()
1101
+ nz_mask = A.data != 0
1102
+ return tuple(idx[nz_mask] for idx in A.coords)
1103
+
1104
+ def _getcol(self, j):
1105
+ """Returns a copy of column j of the array, as an (m x 1) sparse
1106
+ array (column vector).
1107
+ """
1108
+ if self.ndim == 1:
1109
+ raise ValueError("getcol not provided for 1d arrays. Use indexing A[j]")
1110
+ # Subclasses should override this method for efficiency.
1111
+ # Post-multiply by a (n x 1) column vector 'a' containing all zeros
1112
+ # except for a_j = 1
1113
+ N = self.shape[-1]
1114
+ if j < 0:
1115
+ j += N
1116
+ if j < 0 or j >= N:
1117
+ raise IndexError("index out of bounds")
1118
+ col_selector = self._csc_container(([1], [[j], [0]]),
1119
+ shape=(N, 1), dtype=self.dtype)
1120
+ result = self @ col_selector
1121
+ return result
1122
+
1123
+ def _getrow(self, i):
1124
+ """Returns a copy of row i of the array, as a (1 x n) sparse
1125
+ array (row vector).
1126
+ """
1127
+ if self.ndim == 1:
1128
+ raise ValueError("getrow not meaningful for a 1d array")
1129
+ # Subclasses should override this method for efficiency.
1130
+ # Pre-multiply by a (1 x m) row vector 'a' containing all zeros
1131
+ # except for a_i = 1
1132
+ M = self.shape[0]
1133
+ if i < 0:
1134
+ i += M
1135
+ if i < 0 or i >= M:
1136
+ raise IndexError("index out of bounds")
1137
+ row_selector = self._csr_container(([1], [[0], [i]]),
1138
+ shape=(1, M), dtype=self.dtype)
1139
+ return row_selector @ self
1140
+
1141
+ # The following dunder methods cannot be implemented.
1142
+ #
1143
+ # def __array__(self):
1144
+ # # Sparse matrices rely on NumPy wrapping them in object arrays under
1145
+ # # the hood to make unary ufuncs work on them. So we cannot raise
1146
+ # # TypeError here - which would be handy to not give users object
1147
+ # # arrays they probably don't want (they're looking for `.toarray()`).
1148
+ # #
1149
+ # # Conversion with `toarray()` would also break things because of the
1150
+ # # behavior discussed above, plus we want to avoid densification by
1151
+ # # accident because that can too easily blow up memory.
1152
+ #
1153
+ # def __array_ufunc__(self):
1154
+ # # We cannot implement __array_ufunc__ due to mismatching semantics.
1155
+ # # See gh-7707 and gh-7349 for details.
1156
+ #
1157
+ # def __array_function__(self):
1158
+ # # We cannot implement __array_function__ due to mismatching semantics.
1159
+ # # See gh-10362 for details.
1160
+
1161
+ def todense(self, order=None, out=None):
1162
+ """
1163
+ Return a dense representation of this sparse array.
1164
+
1165
+ Parameters
1166
+ ----------
1167
+ order : {'C', 'F'}, optional
1168
+ Whether to store multi-dimensional data in C (row-major)
1169
+ or Fortran (column-major) order in memory. The default
1170
+ is 'None', which provides no ordering guarantees.
1171
+ Cannot be specified in conjunction with the `out`
1172
+ argument.
1173
+
1174
+ out : ndarray, 2-D, optional
1175
+ If specified, uses this array as the output buffer
1176
+ instead of allocating a new array to return. The
1177
+ provided array must have the same shape and dtype as
1178
+ the sparse array on which you are calling the method.
1179
+
1180
+ Returns
1181
+ -------
1182
+ arr : ndarray, 2-D
1183
+ An array with the same shape and containing the same
1184
+ data represented by the sparse array, with the requested
1185
+ memory order. If `out` was passed, the same object is
1186
+ returned after being modified in-place to contain the
1187
+ appropriate values.
1188
+ """
1189
+ return self._ascontainer(self.toarray(order=order, out=out))
1190
+
1191
+ def toarray(self, order=None, out=None):
1192
+ """
1193
+ Return a dense ndarray representation of this sparse array/matrix.
1194
+
1195
+ Parameters
1196
+ ----------
1197
+ order : {'C', 'F'}, optional
1198
+ Whether to store multidimensional data in C (row-major)
1199
+ or Fortran (column-major) order in memory. The default
1200
+ is 'None', which provides no ordering guarantees.
1201
+ Cannot be specified in conjunction with the `out`
1202
+ argument.
1203
+
1204
+ out : ndarray, 2-D, optional
1205
+ If specified, uses this array as the output buffer
1206
+ instead of allocating a new array to return. The provided
1207
+ array must have the same shape and dtype as the sparse
1208
+ array/matrix on which you are calling the method. For most
1209
+ sparse types, `out` is required to be memory contiguous
1210
+ (either C or Fortran ordered).
1211
+
1212
+ Returns
1213
+ -------
1214
+ arr : ndarray, 2-D
1215
+ An array with the same shape and containing the same
1216
+ data represented by the sparse array/matrix, with the requested
1217
+ memory order. If `out` was passed, the same object is
1218
+ returned after being modified in-place to contain the
1219
+ appropriate values.
1220
+ """
1221
+ return self.tocoo(copy=False).toarray(order=order, out=out)
1222
+
1223
+ # Any sparse array format deriving from _spbase must define one of
1224
+ # tocsr or tocoo. The other conversion methods may be implemented for
1225
+ # efficiency, but are not required.
1226
+ def tocsr(self, copy=False):
1227
+ """Convert this array/matrix to Compressed Sparse Row format.
1228
+
1229
+ With copy=False, the data/indices may be shared between this array/matrix and
1230
+ the resultant csr_array/matrix.
1231
+ """
1232
+ return self.tocoo(copy=copy).tocsr(copy=False)
1233
+
1234
+ def todok(self, copy=False):
1235
+ """Convert this array/matrix to Dictionary Of Keys format.
1236
+
1237
+ With copy=False, the data/indices may be shared between this array/matrix and
1238
+ the resultant dok_array/matrix.
1239
+ """
1240
+ return self.tocoo(copy=copy).todok(copy=False)
1241
+
1242
+ def tocoo(self, copy=False):
1243
+ """Convert this array/matrix to COOrdinate format.
1244
+
1245
+ With copy=False, the data/indices may be shared between this array/matrix and
1246
+ the resultant coo_array/matrix.
1247
+ """
1248
+ return self.tocsr(copy=False).tocoo(copy=copy)
1249
+
1250
+ def tolil(self, copy=False):
1251
+ """Convert this array/matrix to List of Lists format.
1252
+
1253
+ With copy=False, the data/indices may be shared between this array/matrix and
1254
+ the resultant lil_array/matrix.
1255
+ """
1256
+ return self.tocsr(copy=False).tolil(copy=copy)
1257
+
1258
+ def todia(self, copy=False):
1259
+ """Convert this array/matrix to sparse DIAgonal format.
1260
+
1261
+ With copy=False, the data/indices may be shared between this array/matrix and
1262
+ the resultant dia_array/matrix.
1263
+ """
1264
+ return self.tocoo(copy=copy).todia(copy=False)
1265
+
1266
+ def tobsr(self, blocksize=None, copy=False):
1267
+ """Convert this array/matrix to Block Sparse Row format.
1268
+
1269
+ With copy=False, the data/indices may be shared between this array/matrix and
1270
+ the resultant bsr_array/matrix.
1271
+
1272
+ When blocksize=(R, C) is provided, it will be used for construction of
1273
+ the bsr_array/matrix.
1274
+ """
1275
+ return self.tocsr(copy=False).tobsr(blocksize=blocksize, copy=copy)
1276
+
1277
+ def tocsc(self, copy=False):
1278
+ """Convert this array/matrix to Compressed Sparse Column format.
1279
+
1280
+ With copy=False, the data/indices may be shared between this array/matrix and
1281
+ the resultant csc_array/matrix.
1282
+ """
1283
+ return self.tocsr(copy=copy).tocsc(copy=False)
1284
+
1285
+ def copy(self):
1286
+ """Returns a copy of this array/matrix.
1287
+
1288
+ No data/indices will be shared between the returned value and current
1289
+ array/matrix.
1290
+ """
1291
+ return self.__class__(self, copy=True)
1292
+
1293
+ def sum(self, axis=None, dtype=None, out=None):
1294
+ """
1295
+ Sum the array/matrix elements over a given axis.
1296
+
1297
+ Parameters
1298
+ ----------
1299
+ axis : {-2, -1, 0, 1, None} optional
1300
+ Axis along which the sum is computed. The default is to
1301
+ compute the sum of all the array/matrix elements, returning a scalar
1302
+ (i.e., `axis` = `None`).
1303
+ dtype : dtype, optional
1304
+ The type of the returned array/matrix and of the accumulator in which
1305
+ the elements are summed. The dtype of `a` is used by default
1306
+ unless `a` has an integer dtype of less precision than the default
1307
+ platform integer. In that case, if `a` is signed then the platform
1308
+ integer is used while if `a` is unsigned then an unsigned integer
1309
+ of the same precision as the platform integer is used.
1310
+
1311
+ .. versionadded:: 0.18.0
1312
+
1313
+ out : np.matrix, optional
1314
+ Alternative output matrix in which to place the result. It must
1315
+ have the same shape as the expected output, but the type of the
1316
+ output values will be cast if necessary.
1317
+
1318
+ .. versionadded:: 0.18.0
1319
+
1320
+ Returns
1321
+ -------
1322
+ sum_along_axis : np.matrix
1323
+ A matrix with the same shape as `self`, with the specified
1324
+ axis removed.
1325
+
1326
+ See Also
1327
+ --------
1328
+ numpy.matrix.sum : NumPy's implementation of 'sum' for matrices
1329
+
1330
+ """
1331
+ axis = validateaxis(axis, ndim=self.ndim)
1332
+
1333
+ # Mimic numpy's casting.
1334
+ res_dtype = get_sum_dtype(self.dtype)
1335
+
1336
+ # Note: all valid 1D axis values are canonically `None`.
1337
+ if axis is None:
1338
+ if self.nnz == 0:
1339
+ return np.sum(self._ascontainer([0]), dtype=dtype or res_dtype, out=out)
1340
+ return np.sum(self._ascontainer(_todata(self)), dtype=dtype, out=out)
1341
+ elif isspmatrix(self):
1342
+ # Ensure spmatrix sums stay 2D
1343
+ new_shape = (1, self.shape[1]) if axis == (0,) else (self.shape[0], 1)
1344
+ else:
1345
+ new_shape = tuple(self.shape[i] for i in range(self.ndim) if i not in axis)
1346
+
1347
+ if out is None:
1348
+ # create out array with desired dtype
1349
+ out = self._ascontainer(np.zeros(new_shape, dtype=dtype or res_dtype))
1350
+ else:
1351
+ if out.shape != new_shape:
1352
+ raise ValueError("out dimensions do not match shape")
1353
+
1354
+ if self.ndim > 2:
1355
+ return self._sum_nd(axis, res_dtype, out)
1356
+
1357
+ # We use multiplication by a matrix of ones to sum.
1358
+ # For some sparse array formats more efficient methods are
1359
+ # possible -- these should override this function.
1360
+ if axis == (0,):
1361
+ ones = self._ascontainer(np.ones((1, self.shape[0]), dtype=res_dtype))
1362
+ # sets dtype while loading into out
1363
+ out[...] = (ones @ self).reshape(new_shape)
1364
+ else: # axis == (1,)
1365
+ ones = self._ascontainer(np.ones((self.shape[1], 1), dtype=res_dtype))
1366
+ # sets dtype while loading into out
1367
+ out[...] = (self @ ones).reshape(new_shape)
1368
+ return out
1369
+
1370
+ def mean(self, axis=None, dtype=None, out=None):
1371
+ """
1372
+ Compute the arithmetic mean along the specified axis.
1373
+
1374
+ Returns the average of the array/matrix elements. The average is taken
1375
+ over all elements in the array/matrix by default, otherwise over the
1376
+ specified axis. `float64` intermediate and return values are used
1377
+ for integer inputs.
1378
+
1379
+ Parameters
1380
+ ----------
1381
+ axis : {-2, -1, 0, 1, None} optional
1382
+ Axis along which the mean is computed. The default is to compute
1383
+ the mean of all elements in the array/matrix (i.e., `axis` = `None`).
1384
+ dtype : data-type, optional
1385
+ Type to use in computing the mean. For integer inputs, the default
1386
+ is `float64`; for floating point inputs, it is the same as the
1387
+ input dtype.
1388
+
1389
+ .. versionadded:: 0.18.0
1390
+
1391
+ out : np.matrix, optional
1392
+ Alternative output matrix in which to place the result. It must
1393
+ have the same shape as the expected output, but the type of the
1394
+ output values will be cast if necessary.
1395
+
1396
+ .. versionadded:: 0.18.0
1397
+
1398
+ Returns
1399
+ -------
1400
+ m : np.matrix
1401
+
1402
+ See Also
1403
+ --------
1404
+ numpy.matrix.mean : NumPy's implementation of 'mean' for matrices
1405
+
1406
+ """
1407
+ axis = validateaxis(axis, ndim=self.ndim)
1408
+
1409
+ integral = (np.issubdtype(self.dtype, np.integer) or
1410
+ np.issubdtype(self.dtype, np.bool_))
1411
+
1412
+ # intermediate dtype for summation
1413
+ inter_dtype = np.float64 if integral else self.dtype
1414
+ inter_self = self.astype(inter_dtype)
1415
+
1416
+ if axis is None:
1417
+ denom = math.prod(self.shape)
1418
+ else:
1419
+ denom = math.prod(self.shape[ax] for ax in axis)
1420
+ res = (inter_self * (1.0 / denom)).sum(axis=axis, dtype=inter_dtype, out=out)
1421
+ if dtype is not None and out is None:
1422
+ return res.astype(dtype, copy=False)
1423
+ return res
1424
+
1425
+
1426
+ def diagonal(self, k=0):
1427
+ """Returns the kth diagonal of the array/matrix.
1428
+
1429
+ Parameters
1430
+ ----------
1431
+ k : int, optional
1432
+ Which diagonal to get, corresponding to elements a[i, i+k].
1433
+ Default: 0 (the main diagonal).
1434
+
1435
+ .. versionadded:: 1.0
1436
+
1437
+ See also
1438
+ --------
1439
+ numpy.diagonal : Equivalent numpy function.
1440
+
1441
+ Examples
1442
+ --------
1443
+ >>> from scipy.sparse import csr_array
1444
+ >>> A = csr_array([[1, 2, 0], [0, 0, 3], [4, 0, 5]])
1445
+ >>> A.diagonal()
1446
+ array([1, 0, 5])
1447
+ >>> A.diagonal(k=1)
1448
+ array([2, 3])
1449
+ """
1450
+ return self.tocsr().diagonal(k=k)
1451
+
1452
+ def trace(self, offset=0):
1453
+ """Returns the sum along diagonals of the sparse array/matrix.
1454
+
1455
+ Parameters
1456
+ ----------
1457
+ offset : int, optional
1458
+ Which diagonal to get, corresponding to elements a[i, i+offset].
1459
+ Default: 0 (the main diagonal).
1460
+
1461
+ """
1462
+ return self.diagonal(k=offset).sum()
1463
+
1464
+ def setdiag(self, values, k=0):
1465
+ """
1466
+ Set diagonal or off-diagonal elements of the array/matrix.
1467
+
1468
+ Parameters
1469
+ ----------
1470
+ values : array_like
1471
+ New values of the diagonal elements.
1472
+
1473
+ Values may have any length. If the diagonal is longer than values,
1474
+ then the remaining diagonal entries will not be set. If values are
1475
+ longer than the diagonal, then the remaining values are ignored.
1476
+
1477
+ If a scalar value is given, all of the diagonal is set to it.
1478
+
1479
+ k : int, optional
1480
+ Which off-diagonal to set, corresponding to elements a[i,i+k].
1481
+ Default: 0 (the main diagonal).
1482
+
1483
+ """
1484
+ M, N = self.shape
1485
+ if (k > 0 and k >= N) or (k < 0 and -k >= M):
1486
+ raise ValueError("k exceeds array dimensions")
1487
+ self._setdiag(np.asarray(values), k)
1488
+
1489
+ def _setdiag(self, values, k):
1490
+ """This part of the implementation gets overridden by the
1491
+ different formats.
1492
+ """
1493
+ M, N = self.shape
1494
+ if k < 0:
1495
+ if values.ndim == 0:
1496
+ # broadcast
1497
+ max_index = min(M+k, N)
1498
+ for i in range(max_index):
1499
+ self[i - k, i] = values
1500
+ else:
1501
+ max_index = min(M+k, N, len(values))
1502
+ if max_index <= 0:
1503
+ return
1504
+ for i, v in enumerate(values[:max_index]):
1505
+ self[i - k, i] = v
1506
+ else:
1507
+ if values.ndim == 0:
1508
+ # broadcast
1509
+ max_index = min(M, N-k)
1510
+ for i in range(max_index):
1511
+ self[i, i + k] = values
1512
+ else:
1513
+ max_index = min(M, N-k, len(values))
1514
+ if max_index <= 0:
1515
+ return
1516
+ for i, v in enumerate(values[:max_index]):
1517
+ self[i, i + k] = v
1518
+
1519
+ def _process_toarray_args(self, order, out):
1520
+ if out is not None:
1521
+ if order is not None:
1522
+ raise ValueError('order cannot be specified if out '
1523
+ 'is not None')
1524
+ if out.shape != self.shape or out.dtype != self.dtype:
1525
+ raise ValueError('out array must be same dtype and shape as '
1526
+ 'sparse array')
1527
+ out[...] = 0.
1528
+ return out
1529
+ else:
1530
+ return np.zeros(self.shape, dtype=self.dtype, order=order)
1531
+
1532
+ def _get_index_dtype(self, arrays=(), maxval=None, check_contents=False):
1533
+ """
1534
+ Determine index dtype for array.
1535
+
1536
+ This wraps _sputils.get_index_dtype, providing compatibility for both
1537
+ array and matrix API sparse matrices. Matrix API sparse matrices would
1538
+ attempt to downcast the indices - which can be computationally
1539
+ expensive and undesirable for users. The array API changes this
1540
+ behaviour.
1541
+
1542
+ See discussion: https://github.com/scipy/scipy/issues/16774
1543
+
1544
+ The get_index_dtype import is due to implementation details of the test
1545
+ suite. It allows the decorator ``with_64bit_maxval_limit`` to mock a
1546
+ lower int32 max value for checks on the matrix API's downcasting
1547
+ behaviour.
1548
+ """
1549
+ from ._sputils import get_index_dtype
1550
+
1551
+ # Don't check contents for array API
1552
+ return get_index_dtype(arrays,
1553
+ maxval,
1554
+ (check_contents and not isinstance(self, sparray)))
1555
+
1556
+
1557
+ class sparray:
1558
+ """A namespace class to separate sparray from spmatrix"""
1559
+
1560
+ @classmethod
1561
+ def __class_getitem__(cls, arg, /):
1562
+ """
1563
+ Return a parametrized wrapper around the `~scipy.sparse.sparray` type.
1564
+
1565
+ .. versionadded:: 1.16.0
1566
+
1567
+ Returns
1568
+ -------
1569
+ alias : types.GenericAlias
1570
+ A parametrized `~scipy.sparse.sparray` type.
1571
+
1572
+ Examples
1573
+ --------
1574
+ >>> import numpy as np
1575
+ >>> from scipy.sparse import coo_array
1576
+
1577
+ >>> coo_array[np.int8, tuple[int]]
1578
+ scipy.sparse._coo.coo_array[numpy.int8, tuple[int]]
1579
+ """
1580
+ from types import GenericAlias
1581
+ return GenericAlias(cls, arg)
1582
+
1583
+
1584
+ sparray.__doc__ = _spbase.__doc__
1585
+
1586
+
1587
+ def isspmatrix(x):
1588
+ """Is `x` of a sparse matrix type?
1589
+
1590
+ Parameters
1591
+ ----------
1592
+ x
1593
+ object to check for being a sparse matrix
1594
+
1595
+ Returns
1596
+ -------
1597
+ bool
1598
+ True if `x` is a sparse matrix, False otherwise
1599
+
1600
+ Examples
1601
+ --------
1602
+ >>> import numpy as np
1603
+ >>> from scipy.sparse import csr_array, csr_matrix, isspmatrix
1604
+ >>> isspmatrix(csr_matrix([[5]]))
1605
+ True
1606
+ >>> isspmatrix(csr_array([[5]]))
1607
+ False
1608
+ >>> isspmatrix(np.array([[5]]))
1609
+ False
1610
+ >>> isspmatrix(5)
1611
+ False
1612
+ """
1613
+ return isinstance(x, spmatrix)