scipy 1.16.2__cp313-cp313-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp313-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp313-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp313-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp313-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp313-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp313-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp313-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp313-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp313-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp313-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp313-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp313-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp313-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp313-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp313-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp313-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp313-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp313-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp313-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp313-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp313-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp313-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp313-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp313-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp313-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp313-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp313-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp313-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp313-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp313-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp313-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp313-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp313-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp313-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp313-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp313-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp313-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp313-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp313-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp313-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp313-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp313-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp313-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp313-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp313-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp313-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp313-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp313-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp313-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp313-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp313-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp313-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
  322. scipy/interpolate/rbf.py +18 -0
  323. scipy/interpolate/tests/__init__.py +0 -0
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  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,1328 @@
1
+ """Base class for sparse matrix formats using compressed storage."""
2
+ __all__ = []
3
+
4
+ from warnings import warn
5
+ import itertools
6
+
7
+ import numpy as np
8
+ from scipy._lib._util import _prune_array, copy_if_needed
9
+
10
+ from ._base import _spbase, issparse, sparray, SparseEfficiencyWarning
11
+ from ._data import _data_matrix, _minmax_mixin
12
+ from . import _sparsetools
13
+ from ._sparsetools import (get_csr_submatrix, csr_sample_offsets, csr_todense,
14
+ csr_sample_values, csr_row_index, csr_row_slice,
15
+ csr_column_index1, csr_column_index2, csr_diagonal,
16
+ expandptr, csr_has_canonical_format, csr_eliminate_zeros,
17
+ csr_sum_duplicates, csr_has_sorted_indices, csr_sort_indices,
18
+ csr_matmat_maxnnz, csr_matmat)
19
+ from ._index import IndexMixin
20
+ from ._sputils import (upcast, upcast_char, to_native, isshape,
21
+ getdtype, isintlike, downcast_intp_index,
22
+ get_sum_dtype, check_shape, get_index_dtype, broadcast_shapes)
23
+
24
+
25
+ class _cs_matrix(_data_matrix, _minmax_mixin, IndexMixin):
26
+ """
27
+ base array/matrix class for compressed row- and column-oriented arrays/matrices
28
+ """
29
+
30
+ def __init__(self, arg1, shape=None, dtype=None, copy=False, *, maxprint=None):
31
+ _data_matrix.__init__(self, arg1, maxprint=maxprint)
32
+
33
+ if issparse(arg1):
34
+ if arg1.format == self.format and copy:
35
+ arg1 = arg1.copy()
36
+ else:
37
+ arg1 = arg1.asformat(self.format)
38
+ self.indptr, self.indices, self.data, self._shape = (
39
+ arg1.indptr, arg1.indices, arg1.data, arg1._shape
40
+ )
41
+
42
+ elif isinstance(arg1, tuple):
43
+ if isshape(arg1, allow_nd=self._allow_nd):
44
+ # It's a tuple of matrix dimensions (M, N)
45
+ # create empty matrix
46
+ self._shape = check_shape(arg1, allow_nd=self._allow_nd)
47
+ M, N = self._swap(self._shape_as_2d)
48
+ # Select index dtype large enough to pass array and
49
+ # scalar parameters to sparsetools
50
+ idx_dtype = self._get_index_dtype(maxval=max(self.shape))
51
+ self.data = np.zeros(0, getdtype(dtype, default=float))
52
+ self.indices = np.zeros(0, idx_dtype)
53
+ self.indptr = np.zeros(M + 1, dtype=idx_dtype)
54
+ else:
55
+ if len(arg1) == 2:
56
+ # (data, ij) format
57
+ coo = self._coo_container(arg1, shape=shape, dtype=dtype)
58
+ arrays = coo._coo_to_compressed(self._swap)
59
+ self.indptr, self.indices, self.data, self._shape = arrays
60
+ self.sum_duplicates()
61
+ elif len(arg1) == 3:
62
+ # (data, indices, indptr) format
63
+ (data, indices, indptr) = arg1
64
+
65
+ # Select index dtype large enough to pass array and
66
+ # scalar parameters to sparsetools
67
+ maxval = None
68
+ if shape is not None and 0 not in shape:
69
+ maxval = max(shape)
70
+ idx_dtype = self._get_index_dtype((indices, indptr),
71
+ maxval=maxval,
72
+ check_contents=True)
73
+
74
+ if not copy:
75
+ copy = copy_if_needed
76
+ self.indices = np.array(indices, copy=copy, dtype=idx_dtype)
77
+ self.indptr = np.array(indptr, copy=copy, dtype=idx_dtype)
78
+ self.data = np.array(data, copy=copy, dtype=dtype)
79
+ else:
80
+ raise ValueError(f"unrecognized {self.__class__.__name__} "
81
+ f"constructor input: {arg1}")
82
+
83
+ else:
84
+ # must be dense
85
+ try:
86
+ arg1 = np.asarray(arg1)
87
+ except Exception as e:
88
+ raise ValueError(f"unrecognized {self.__class__.__name__} "
89
+ f"constructor input: {arg1}") from e
90
+ if isinstance(self, sparray) and arg1.ndim != 2 and self.format == "csc":
91
+ raise ValueError(f"CSC arrays don't support {arg1.ndim}D input. Use 2D")
92
+ if arg1.ndim > 2:
93
+ raise ValueError(f"CSR arrays don't yet support {arg1.ndim}D.")
94
+
95
+ coo = self._coo_container(arg1, dtype=dtype)
96
+ arrays = coo._coo_to_compressed(self._swap)
97
+ self.indptr, self.indices, self.data, self._shape = arrays
98
+
99
+ # Read matrix dimensions given, if any
100
+ if shape is not None:
101
+ self._shape = check_shape(shape, allow_nd=self._allow_nd)
102
+ elif self.shape is None:
103
+ # shape not already set, try to infer dimensions
104
+ try:
105
+ M = len(self.indptr) - 1
106
+ N = self.indices.max() + 1
107
+ except Exception as e:
108
+ raise ValueError('unable to infer matrix dimensions') from e
109
+
110
+ self._shape = check_shape(self._swap((M, N)), allow_nd=self._allow_nd)
111
+
112
+ if dtype is not None:
113
+ newdtype = getdtype(dtype)
114
+ self.data = self.data.astype(newdtype, copy=False)
115
+
116
+ self.check_format(full_check=False)
117
+
118
+ def _getnnz(self, axis=None):
119
+ if axis is None:
120
+ return int(self.indptr[-1])
121
+ elif self.ndim == 1:
122
+ if axis in (0, -1):
123
+ return int(self.indptr[-1])
124
+ raise ValueError('axis out of bounds')
125
+ else:
126
+ if axis < 0:
127
+ axis += 2
128
+ axis, _ = self._swap((axis, 1 - axis))
129
+ _, N = self._swap(self.shape)
130
+ if axis == 0:
131
+ return np.bincount(downcast_intp_index(self.indices), minlength=N)
132
+ elif axis == 1:
133
+ return np.diff(self.indptr)
134
+ raise ValueError('axis out of bounds')
135
+
136
+ _getnnz.__doc__ = _spbase._getnnz.__doc__
137
+
138
+ def count_nonzero(self, axis=None):
139
+ self.sum_duplicates()
140
+ if axis is None:
141
+ return np.count_nonzero(self.data)
142
+
143
+ if self.ndim == 1:
144
+ if axis not in (0, -1):
145
+ raise ValueError('axis out of bounds')
146
+ return np.count_nonzero(self.data)
147
+
148
+ if axis < 0:
149
+ axis += 2
150
+ axis, _ = self._swap((axis, 1 - axis))
151
+ if axis == 0:
152
+ _, N = self._swap(self.shape)
153
+ mask = self.data != 0
154
+ idx = self.indices if mask.all() else self.indices[mask]
155
+ return np.bincount(downcast_intp_index(idx), minlength=N)
156
+ elif axis == 1:
157
+ if self.data.all():
158
+ return np.diff(self.indptr)
159
+ pairs = itertools.pairwise(self.indptr)
160
+ return np.array([np.count_nonzero(self.data[i:j]) for i, j in pairs])
161
+ else:
162
+ raise ValueError('axis out of bounds')
163
+
164
+ count_nonzero.__doc__ = _spbase.count_nonzero.__doc__
165
+
166
+ def check_format(self, full_check=True):
167
+ """Check whether the array/matrix respects the CSR or CSC format.
168
+
169
+ Parameters
170
+ ----------
171
+ full_check : bool, optional
172
+ If `True`, run rigorous check, scanning arrays for valid values.
173
+ Note that activating those check might copy arrays for casting,
174
+ modifying indices and index pointers' inplace.
175
+ If `False`, run basic checks on attributes. O(1) operations.
176
+ Default is `True`.
177
+ """
178
+ # index arrays should have integer data types
179
+ if self.indptr.dtype.kind != 'i':
180
+ warn(f"indptr array has non-integer dtype ({self.indptr.dtype.name})",
181
+ stacklevel=3)
182
+ if self.indices.dtype.kind != 'i':
183
+ warn(f"indices array has non-integer dtype ({self.indices.dtype.name})",
184
+ stacklevel=3)
185
+
186
+ # check array shapes
187
+ for x in [self.data.ndim, self.indices.ndim, self.indptr.ndim]:
188
+ if x != 1:
189
+ raise ValueError('data, indices, and indptr should be 1-D')
190
+
191
+ # check index pointer. Use _swap to determine proper bounds
192
+ M, N = self._swap(self._shape_as_2d)
193
+
194
+ if (len(self.indptr) != M + 1):
195
+ raise ValueError(f"index pointer size {len(self.indptr)} should be {M + 1}")
196
+ if (self.indptr[0] != 0):
197
+ raise ValueError("index pointer should start with 0")
198
+
199
+ # check index and data arrays
200
+ if (len(self.indices) != len(self.data)):
201
+ raise ValueError("indices and data should have the same size")
202
+ if (self.indptr[-1] > len(self.indices)):
203
+ raise ValueError("Last value of index pointer should be less than "
204
+ "the size of index and data arrays")
205
+
206
+ self.prune()
207
+
208
+ if full_check:
209
+ # check format validity (more expensive)
210
+ if self.nnz > 0:
211
+ if self.indices.max() >= N:
212
+ raise ValueError(f"indices must be < {N}")
213
+ if self.indices.min() < 0:
214
+ raise ValueError("indices must be >= 0")
215
+ if np.diff(self.indptr).min() < 0:
216
+ raise ValueError("indptr must be a non-decreasing sequence")
217
+
218
+ idx_dtype = self._get_index_dtype((self.indptr, self.indices))
219
+ self.indptr = np.asarray(self.indptr, dtype=idx_dtype)
220
+ self.indices = np.asarray(self.indices, dtype=idx_dtype)
221
+ self.data = to_native(self.data)
222
+
223
+ # if not self.has_sorted_indices():
224
+ # warn('Indices were not in sorted order. Sorting indices.')
225
+ # self.sort_indices()
226
+ # assert(self.has_sorted_indices())
227
+ # TODO check for duplicates?
228
+
229
+ #######################
230
+ # Boolean comparisons #
231
+ #######################
232
+
233
+ def _scalar_binopt(self, other, op):
234
+ """Scalar version of self._binopt, for cases in which no new nonzeros
235
+ are added. Produces a new sparse array in canonical form.
236
+ """
237
+ self.sum_duplicates()
238
+ res = self._with_data(op(self.data, other), copy=True)
239
+ res.eliminate_zeros()
240
+ return res
241
+
242
+ #################################
243
+ # Arithmetic operator overrides #
244
+ #################################
245
+
246
+ def _add_dense(self, other):
247
+ if other.shape != self.shape:
248
+ raise ValueError(f'Incompatible shapes ({self.shape} and {other.shape})')
249
+ dtype = upcast_char(self.dtype.char, other.dtype.char)
250
+ order = self._swap('CF')[0]
251
+ result = np.array(other, dtype=dtype, order=order, copy=True)
252
+ y = result if result.flags.c_contiguous else result.T
253
+ M, N = self._swap(self._shape_as_2d)
254
+ csr_todense(M, N, self.indptr, self.indices, self.data, y)
255
+ return self._container(result, copy=False)
256
+
257
+ def _add_sparse(self, other):
258
+ return self._binopt(other, '_plus_')
259
+
260
+ def _sub_sparse(self, other):
261
+ return self._binopt(other, '_minus_')
262
+
263
+ def _multiply_2d_with_broadcasting(self, other):
264
+ """Element-wise multiplication by array/matrix, vector, or scalar."""
265
+ # Called after checking that other is not scalarlike and self.ndim <=2
266
+ if issparse(other):
267
+ if self.shape == other.shape:
268
+ other = self.__class__(other)
269
+ return self._binopt(other, '_elmul_')
270
+ # Single element.
271
+ if other.shape == (1, 1):
272
+ result = self._mul_scalar(other.toarray()[0, 0])
273
+ if self.ndim == 1:
274
+ return result.reshape((1, self.shape[0]))
275
+ return result
276
+ if other.shape == (1,):
277
+ return self._mul_scalar(other.toarray()[0])
278
+ if self.shape in ((1,), (1, 1)):
279
+ return other._mul_scalar(self.data.sum())
280
+
281
+ # broadcast. treat 1d like a row
282
+ sM, sN = self._shape_as_2d
283
+ oM, oN = other._shape_as_2d
284
+ # A row times a column.
285
+ if sM == 1 and oN == 1:
286
+ return other._matmul_sparse(self.reshape(sM, sN).tocsc())
287
+ if sN == 1 and oM == 1:
288
+ return self._matmul_sparse(other.reshape(oM, oN).tocsc())
289
+
290
+ is_array = isinstance(self, sparray)
291
+ # Other is a row.
292
+ if oM == 1 and sN == oN:
293
+ new_other = _make_diagonal_csr(other.toarray().ravel(), is_array)
294
+ result = self._matmul_sparse(new_other)
295
+ return result if self.ndim == 2 else result.reshape((1, oN))
296
+ # self is a row.
297
+ if sM == 1 and sN == oN:
298
+ copy = _make_diagonal_csr(self.toarray().ravel(), is_array)
299
+ return other._matmul_sparse(copy)
300
+
301
+ # Other is a column.
302
+ if oN == 1 and sM == oM:
303
+ new_other = _make_diagonal_csr(other.toarray().ravel(), is_array)
304
+ return new_other._matmul_sparse(self)
305
+ # self is a column.
306
+ if sN == 1 and sM == oM:
307
+ new_self = _make_diagonal_csr(self.toarray().ravel(), is_array)
308
+ return new_self._matmul_sparse(other)
309
+ raise ValueError(f"inconsistent shapes {self.shape} and {other.shape}")
310
+
311
+ # Assume other is a dense matrix/array, which produces a single-item
312
+ # object array if other isn't convertible to ndarray.
313
+ other = np.asanyarray(other)
314
+
315
+ if other.ndim > 2:
316
+ return np.multiply(self.toarray(), other)
317
+ # Single element / wrapped object.
318
+ if other.size == 1:
319
+ if other.dtype == np.object_:
320
+ # 'other' not convertible to ndarray.
321
+ return NotImplemented
322
+ bshape = broadcast_shapes(self.shape, other.shape)
323
+ return self._mul_scalar(other.flat[0]).reshape(bshape)
324
+ # Fast case for trivial sparse matrix.
325
+ if self.shape in ((1,), (1, 1)):
326
+ bshape = broadcast_shapes(self.shape, other.shape)
327
+ return np.multiply(self.data.sum(), other).reshape(bshape)
328
+
329
+ ret = self.tocoo()
330
+ # Matching shapes.
331
+ if self.shape == other.shape:
332
+ data = np.multiply(ret.data, other[ret.coords])
333
+ ret.data = data.view(np.ndarray).ravel()
334
+ return ret
335
+
336
+ # convert other to 2d
337
+ other2d = np.atleast_2d(other)
338
+ # Sparse row vector times...
339
+ if self.shape[0] == 1 or self.ndim == 1:
340
+ if other2d.shape[1] == 1: # Dense column vector.
341
+ data = np.multiply(ret.data, other2d)
342
+ elif other2d.shape[1] == self.shape[-1]: # Dense 2d matrix.
343
+ data = np.multiply(ret.data, other2d[:, ret.col])
344
+ else:
345
+ raise ValueError(f"inconsistent shapes {self.shape} and {other.shape}")
346
+ idx_dtype = self._get_index_dtype(ret.col,
347
+ maxval=ret.nnz * other2d.shape[0])
348
+ row = np.repeat(np.arange(other2d.shape[0], dtype=idx_dtype), ret.nnz)
349
+ col = np.tile(ret.col.astype(idx_dtype, copy=False), other2d.shape[0])
350
+ return self._coo_container(
351
+ (data.view(np.ndarray).ravel(), (row, col)),
352
+ shape=(other2d.shape[0], self.shape[-1]),
353
+ copy=False
354
+ )
355
+ # Sparse column vector times...
356
+ if self.shape[1] == 1:
357
+ if other2d.shape[0] == 1: # Dense row vector.
358
+ data = np.multiply(ret.data[:, None], other2d)
359
+ elif other2d.shape[0] == self.shape[0]: # Dense 2d array.
360
+ data = np.multiply(ret.data[:, None], other2d[ret.row])
361
+ else:
362
+ raise ValueError(f"inconsistent shapes {self.shape} and {other.shape}")
363
+ idx_dtype = self._get_index_dtype(ret.row,
364
+ maxval=ret.nnz * other2d.shape[1])
365
+ row = np.repeat(ret.row.astype(idx_dtype, copy=False), other2d.shape[1])
366
+ col = np.tile(np.arange(other2d.shape[1], dtype=idx_dtype), ret.nnz)
367
+ return self._coo_container(
368
+ (data.view(np.ndarray).ravel(), (row, col)),
369
+ shape=(self.shape[0], other2d.shape[1]),
370
+ copy=False
371
+ )
372
+ # Sparse matrix times dense row vector.
373
+ if other2d.shape[0] == 1 and self.shape[1] == other2d.shape[1]:
374
+ data = np.multiply(ret.data, other2d[:, ret.col].ravel())
375
+ # Sparse matrix times dense column vector.
376
+ elif other2d.shape[1] == 1 and self.shape[0] == other2d.shape[0]:
377
+ data = np.multiply(ret.data, other2d[ret.row].ravel())
378
+ else:
379
+ raise ValueError(f"inconsistent shapes {self.shape} and {other.shape}")
380
+ ret.data = data.view(np.ndarray).ravel()
381
+ return ret
382
+
383
+ ###########################
384
+ # Multiplication handlers #
385
+ ###########################
386
+
387
+ def _matmul_vector(self, other):
388
+ M, N = self._shape_as_2d
389
+
390
+ # output array
391
+ result = np.zeros(M, dtype=upcast_char(self.dtype.char, other.dtype.char))
392
+
393
+ # csr_matvec or csc_matvec
394
+ fn = getattr(_sparsetools, self.format + '_matvec')
395
+ fn(M, N, self.indptr, self.indices, self.data, other, result)
396
+
397
+ return result[0] if self.ndim == 1 else result
398
+
399
+ def _matmul_multivector(self, other):
400
+ M, N = self._shape_as_2d
401
+ n_vecs = other.shape[-1] # number of column vectors
402
+
403
+ result = np.zeros((M, n_vecs),
404
+ dtype=upcast_char(self.dtype.char, other.dtype.char))
405
+
406
+ # csr_matvecs or csc_matvecs
407
+ fn = getattr(_sparsetools, self.format + '_matvecs')
408
+ fn(M, N, n_vecs, self.indptr, self.indices, self.data,
409
+ other.ravel(), result.ravel())
410
+
411
+ if self.ndim == 1:
412
+ return result.reshape((n_vecs,))
413
+ return result
414
+
415
+ def _matmul_sparse(self, other):
416
+ M, K1 = self._shape_as_2d
417
+ # if other is 1d, treat as a **column**
418
+ o_ndim = other.ndim
419
+ if o_ndim == 1:
420
+ # convert 1d array to a 2d column when on the right of @
421
+ other = other.reshape((1, other.shape[0])).T # Note: converts to CSC
422
+ K2, N = other._shape if other.ndim == 2 else (other.shape[0], 1)
423
+
424
+ # find new_shape: (M, N), (M,), (N,) or ()
425
+ new_shape = ()
426
+ if self.ndim == 2:
427
+ new_shape += (M,)
428
+ if o_ndim == 2:
429
+ new_shape += (N,)
430
+ faux_shape = (M if self.ndim == 2 else 1, N if o_ndim == 2 else 1)
431
+
432
+ other = self.__class__(other) # convert to this format
433
+ index_arrays = (self.indptr, self.indices, other.indptr, other.indices)
434
+
435
+ M, N = self._swap((M, N))
436
+ s, o = self._swap((self, other))
437
+
438
+ idx_dtype = self._get_index_dtype(index_arrays)
439
+ s_indptr = np.asarray(s.indptr, dtype=idx_dtype)
440
+ s_indices = np.asarray(s.indices, dtype=idx_dtype)
441
+ o_indptr = np.asarray(o.indptr, dtype=idx_dtype)
442
+ o_indices = np.asarray(o.indices, dtype=idx_dtype)
443
+
444
+ nnz = csr_matmat_maxnnz(M, N, s_indptr, s_indices, o_indptr, o_indices)
445
+ if nnz == 0:
446
+ if new_shape == ():
447
+ return np.array(0, dtype=upcast(self.dtype, other.dtype))
448
+ return self.__class__(new_shape, dtype=upcast(self.dtype, other.dtype))
449
+
450
+ new_idx_dtype = self._get_index_dtype(index_arrays, maxval=nnz)
451
+ if new_idx_dtype != idx_dtype:
452
+ idx_dtype = new_idx_dtype
453
+ s_indptr = np.asarray(s.indptr, dtype=idx_dtype)
454
+ s_indices = np.asarray(s.indices, dtype=idx_dtype)
455
+ o_indptr = np.asarray(o.indptr, dtype=idx_dtype)
456
+ o_indices = np.asarray(o.indices, dtype=idx_dtype)
457
+
458
+ indptr = np.empty(M + 1, dtype=idx_dtype)
459
+ indices = np.empty(nnz, dtype=idx_dtype)
460
+ data = np.empty(nnz, dtype=upcast(self.dtype, other.dtype))
461
+
462
+ csr_matmat(M, N,
463
+ s_indptr, s_indices, s.data,
464
+ o_indptr, o_indices, o.data,
465
+ indptr, indices, data)
466
+
467
+ if new_shape == ():
468
+ return np.array(data[0])
469
+ res = self.__class__((data, indices, indptr), shape=faux_shape)
470
+ if faux_shape != new_shape:
471
+ if res.format != 'csr':
472
+ res = res.tocsr()
473
+ res = res.reshape(new_shape)
474
+ return res
475
+
476
+ def diagonal(self, k=0):
477
+ M, N = self._swap(self.shape)
478
+ k, _ = self._swap((k, -k))
479
+
480
+ if k <= -M or k >= N:
481
+ return np.empty(0, dtype=self.data.dtype)
482
+ y = np.empty(min(M + min(k, 0), N - max(k, 0)), dtype=upcast(self.dtype))
483
+ csr_diagonal(k, M, N, self.indptr, self.indices, self.data, y)
484
+ return y
485
+
486
+ diagonal.__doc__ = _spbase.diagonal.__doc__
487
+
488
+ #####################
489
+ # Reduce operations #
490
+ #####################
491
+
492
+ def sum(self, axis=None, dtype=None, out=None):
493
+ """Sum the array/matrix over the given axis. If the axis is None, sum
494
+ over both rows and columns, returning a scalar.
495
+ """
496
+ # The _spbase base class already does axis=None and major axis efficiently
497
+ # so we only do the case axis= minor axis
498
+ if (self.ndim == 2 and not hasattr(self, 'blocksize') and
499
+ axis in self._swap(((1, -1), (0, -2)))[0]):
500
+ # faster than multiplication for large minor axis in CSC/CSR
501
+ res_dtype = get_sum_dtype(self.dtype)
502
+ ret = np.zeros(len(self.indptr) - 1, dtype=res_dtype)
503
+
504
+ major_index, value = self._minor_reduce(np.add)
505
+ ret[major_index] = value
506
+ ret = self._ascontainer(ret)
507
+ if axis % 2 == 1:
508
+ ret = ret.T
509
+
510
+ return ret.sum(axis=(), dtype=dtype, out=out)
511
+ else:
512
+ return _spbase.sum(self, axis=axis, dtype=dtype, out=out)
513
+
514
+ sum.__doc__ = _spbase.sum.__doc__
515
+
516
+ def _minor_reduce(self, ufunc, data=None):
517
+ """Reduce nonzeros with a ufunc over the minor axis when non-empty
518
+
519
+ Can be applied to a function of self.data by supplying data parameter.
520
+
521
+ Warning: this does not call sum_duplicates()
522
+
523
+ Returns
524
+ -------
525
+ major_index : array of ints
526
+ Major indices where nonzero
527
+
528
+ value : array of self.dtype
529
+ Reduce result for nonzeros in each major_index
530
+ """
531
+ if data is None:
532
+ data = self.data
533
+ major_index = np.flatnonzero(np.diff(self.indptr))
534
+ value = ufunc.reduceat(data,
535
+ downcast_intp_index(self.indptr[major_index]))
536
+ return major_index, value
537
+
538
+ #######################
539
+ # Getting and Setting #
540
+ #######################
541
+
542
+ def _get_intXint(self, row, col):
543
+ M, N = self._swap(self.shape)
544
+ major, minor = self._swap((row, col))
545
+ indptr, indices, data = get_csr_submatrix(
546
+ M, N, self.indptr, self.indices, self.data,
547
+ major, major + 1, minor, minor + 1)
548
+ return data.sum(dtype=self.dtype)
549
+
550
+ def _get_sliceXslice(self, row, col):
551
+ major, minor = self._swap((row, col))
552
+ if major.step in (1, None) and minor.step in (1, None):
553
+ return self._get_submatrix(major, minor, copy=True)
554
+ return self._major_slice(major)._minor_slice(minor)
555
+
556
+ def _get_arrayXarray(self, row, col):
557
+ # inner indexing
558
+ idx_dtype = self.indices.dtype
559
+ M, N = self._swap(self.shape)
560
+ major, minor = self._swap((row, col))
561
+ major = np.asarray(major, dtype=idx_dtype)
562
+ minor = np.asarray(minor, dtype=idx_dtype)
563
+
564
+ val = np.empty(major.size, dtype=self.dtype)
565
+ csr_sample_values(M, N, self.indptr, self.indices, self.data,
566
+ major.size, major.ravel(), minor.ravel(), val)
567
+ if major.ndim == 1:
568
+ return self._ascontainer(val)
569
+ return self.__class__(val.reshape(major.shape))
570
+
571
+ def _get_columnXarray(self, row, col):
572
+ # outer indexing
573
+ major, minor = self._swap((row, col))
574
+ return self._major_index_fancy(major)._minor_index_fancy(minor)
575
+
576
+ def _major_index_fancy(self, idx):
577
+ """Index along the major axis where idx is an array of ints.
578
+ """
579
+ idx_dtype = self._get_index_dtype((self.indptr, self.indices))
580
+ indices = np.asarray(idx, dtype=idx_dtype).ravel()
581
+
582
+ N = self._swap(self._shape_as_2d)[1]
583
+ M = len(indices)
584
+ new_shape = self._swap((M, N)) if self.ndim == 2 else (M,)
585
+ if M == 0:
586
+ return self.__class__(new_shape, dtype=self.dtype)
587
+
588
+ row_nnz = (self.indptr[indices + 1] - self.indptr[indices]).astype(idx_dtype)
589
+ res_indptr = np.zeros(M + 1, dtype=idx_dtype)
590
+ np.cumsum(row_nnz, out=res_indptr[1:])
591
+
592
+ nnz = res_indptr[-1]
593
+ res_indices = np.empty(nnz, dtype=idx_dtype)
594
+ res_data = np.empty(nnz, dtype=self.dtype)
595
+ csr_row_index(
596
+ M,
597
+ indices,
598
+ self.indptr.astype(idx_dtype, copy=False),
599
+ self.indices.astype(idx_dtype, copy=False),
600
+ self.data,
601
+ res_indices,
602
+ res_data
603
+ )
604
+
605
+ return self.__class__((res_data, res_indices, res_indptr),
606
+ shape=new_shape, copy=False)
607
+
608
+ def _major_slice(self, idx, copy=False):
609
+ """Index along the major axis where idx is a slice object.
610
+ """
611
+ if idx == slice(None):
612
+ return self.copy() if copy else self
613
+
614
+ M, N = self._swap(self._shape_as_2d)
615
+ start, stop, step = idx.indices(M)
616
+ M = len(range(start, stop, step))
617
+ new_shape = self._swap((M, N)) if self.ndim == 2 else (M,)
618
+ if M == 0:
619
+ return self.__class__(new_shape, dtype=self.dtype)
620
+
621
+ # Work out what slices are needed for `row_nnz`
622
+ # start,stop can be -1, only if step is negative
623
+ start0, stop0 = start, stop
624
+ if stop == -1 and start >= 0:
625
+ stop0 = None
626
+ start1, stop1 = start + 1, stop + 1
627
+
628
+ row_nnz = self.indptr[start1:stop1:step] - \
629
+ self.indptr[start0:stop0:step]
630
+ idx_dtype = self.indices.dtype
631
+ res_indptr = np.zeros(M+1, dtype=idx_dtype)
632
+ np.cumsum(row_nnz, out=res_indptr[1:])
633
+
634
+ if step == 1:
635
+ all_idx = slice(self.indptr[start], self.indptr[stop])
636
+ res_indices = np.array(self.indices[all_idx], copy=copy)
637
+ res_data = np.array(self.data[all_idx], copy=copy)
638
+ else:
639
+ nnz = res_indptr[-1]
640
+ res_indices = np.empty(nnz, dtype=idx_dtype)
641
+ res_data = np.empty(nnz, dtype=self.dtype)
642
+ csr_row_slice(start, stop, step, self.indptr, self.indices,
643
+ self.data, res_indices, res_data)
644
+
645
+ return self.__class__((res_data, res_indices, res_indptr),
646
+ shape=new_shape, copy=False)
647
+
648
+ def _minor_index_fancy(self, idx):
649
+ """Index along the minor axis where idx is an array of ints.
650
+ """
651
+ idx_dtype = self._get_index_dtype((self.indices, self.indptr))
652
+ indices = self.indices.astype(idx_dtype, copy=False)
653
+ indptr = self.indptr.astype(idx_dtype, copy=False)
654
+
655
+ idx = np.asarray(idx, dtype=idx_dtype).ravel()
656
+
657
+ M, N = self._swap(self._shape_as_2d)
658
+ k = len(idx)
659
+ new_shape = self._swap((M, k)) if self.ndim == 2 else (k,)
660
+ if k == 0:
661
+ return self.__class__(new_shape, dtype=self.dtype)
662
+
663
+ # pass 1: count idx entries and compute new indptr
664
+ col_offsets = np.zeros(N, dtype=idx_dtype)
665
+ res_indptr = np.empty_like(self.indptr, dtype=idx_dtype)
666
+ csr_column_index1(
667
+ k,
668
+ idx,
669
+ M,
670
+ N,
671
+ indptr,
672
+ indices,
673
+ col_offsets,
674
+ res_indptr,
675
+ )
676
+
677
+ # pass 2: copy indices/data for selected idxs
678
+ col_order = np.argsort(idx).astype(idx_dtype, copy=False)
679
+ nnz = res_indptr[-1]
680
+ res_indices = np.empty(nnz, dtype=idx_dtype)
681
+ res_data = np.empty(nnz, dtype=self.dtype)
682
+ csr_column_index2(col_order, col_offsets, len(self.indices),
683
+ indices, self.data, res_indices, res_data)
684
+ return self.__class__((res_data, res_indices, res_indptr),
685
+ shape=new_shape, copy=False)
686
+
687
+ def _minor_slice(self, idx, copy=False):
688
+ """Index along the minor axis where idx is a slice object.
689
+ """
690
+ if idx == slice(None):
691
+ return self.copy() if copy else self
692
+
693
+ M, N = self._swap(self._shape_as_2d)
694
+ start, stop, step = idx.indices(N)
695
+ N = len(range(start, stop, step))
696
+ if N == 0:
697
+ return self.__class__(self._swap((M, N)), dtype=self.dtype)
698
+ if step == 1:
699
+ return self._get_submatrix(minor=idx, copy=copy)
700
+ # TODO: don't fall back to fancy indexing here
701
+ return self._minor_index_fancy(np.arange(start, stop, step))
702
+
703
+ def _get_submatrix(self, major=None, minor=None, copy=False):
704
+ """Return a submatrix of this matrix.
705
+
706
+ major, minor: None, int, or slice with step 1
707
+ """
708
+ M, N = self._swap(self._shape_as_2d)
709
+ i0, i1 = _process_slice(major, M)
710
+ j0, j1 = _process_slice(minor, N)
711
+
712
+ if i0 == 0 and j0 == 0 and i1 == M and j1 == N:
713
+ return self.copy() if copy else self
714
+
715
+ indptr, indices, data = get_csr_submatrix(
716
+ M, N, self.indptr, self.indices, self.data, i0, i1, j0, j1)
717
+
718
+ shape = self._swap((i1 - i0, j1 - j0))
719
+ if self.ndim == 1:
720
+ shape = (shape[1],)
721
+ return self.__class__((data, indices, indptr), shape=shape,
722
+ dtype=self.dtype, copy=False)
723
+
724
+ def _set_intXint(self, row, col, x):
725
+ i, j = self._swap((row, col))
726
+ self._set_many(i, j, x)
727
+
728
+ def _set_arrayXarray(self, row, col, x):
729
+ i, j = self._swap((row, col))
730
+ self._set_many(i, j, x)
731
+
732
+ def _set_arrayXarray_sparse(self, row, col, x):
733
+ # clear entries that will be overwritten
734
+ self._zero_many(*self._swap((row, col)))
735
+
736
+ M, N = row.shape # matches col.shape
737
+ broadcast_row = M != 1 and x.shape[0] == 1
738
+ broadcast_col = N != 1 and x.shape[1] == 1
739
+ r, c = x.row, x.col
740
+
741
+ x = np.asarray(x.data, dtype=self.dtype)
742
+ if x.size == 0:
743
+ return
744
+
745
+ if broadcast_row:
746
+ r = np.repeat(np.arange(M), len(r))
747
+ c = np.tile(c, M)
748
+ x = np.tile(x, M)
749
+ if broadcast_col:
750
+ r = np.repeat(r, N)
751
+ c = np.tile(np.arange(N), len(c))
752
+ x = np.repeat(x, N)
753
+ # only assign entries in the new sparsity structure
754
+ i, j = self._swap((row[r, c], col[r, c]))
755
+ self._set_many(i, j, x)
756
+
757
+ def _setdiag(self, values, k):
758
+ if 0 in self.shape:
759
+ return
760
+ if self.ndim == 1:
761
+ raise NotImplementedError('diagonals cant be set in 1d arrays')
762
+
763
+ M, N = self.shape
764
+ broadcast = (values.ndim == 0)
765
+
766
+ if k < 0:
767
+ if broadcast:
768
+ max_index = min(M + k, N)
769
+ else:
770
+ max_index = min(M + k, N, len(values))
771
+ i = np.arange(-k, max_index - k, dtype=self.indices.dtype)
772
+ j = np.arange(max_index, dtype=self.indices.dtype)
773
+
774
+ else:
775
+ if broadcast:
776
+ max_index = min(M, N - k)
777
+ else:
778
+ max_index = min(M, N - k, len(values))
779
+ i = np.arange(max_index, dtype=self.indices.dtype)
780
+ j = np.arange(k, k + max_index, dtype=self.indices.dtype)
781
+
782
+ if not broadcast:
783
+ values = values[:len(i)]
784
+
785
+ x = np.atleast_1d(np.asarray(values, dtype=self.dtype)).ravel()
786
+ if x.squeeze().shape != i.squeeze().shape:
787
+ x = np.broadcast_to(x, i.shape)
788
+ if x.size == 0:
789
+ return
790
+
791
+ M, N = self._swap((M, N))
792
+ i, j = self._swap((i, j))
793
+ n_samples = x.size
794
+ offsets = np.empty(n_samples, dtype=self.indices.dtype)
795
+ ret = csr_sample_offsets(M, N, self.indptr, self.indices, n_samples,
796
+ i, j, offsets)
797
+ if ret == 1:
798
+ # rinse and repeat
799
+ self.sum_duplicates()
800
+ csr_sample_offsets(M, N, self.indptr, self.indices, n_samples,
801
+ i, j, offsets)
802
+ if -1 not in offsets:
803
+ # only affects existing non-zero cells
804
+ self.data[offsets] = x
805
+ return
806
+
807
+ mask = (offsets >= 0)
808
+ # Boundary between csc and convert to coo
809
+ # The value 0.001 is justified in gh-19962#issuecomment-1920499678
810
+ if self.nnz - mask.sum() < self.nnz * 0.001:
811
+ # replace existing entries
812
+ self.data[offsets[mask]] = x[mask]
813
+ # create new entries
814
+ mask = ~mask
815
+ i = i[mask]
816
+ j = j[mask]
817
+ self._insert_many(i, j, x[mask])
818
+ else:
819
+ # convert to coo for _set_diag
820
+ coo = self.tocoo()
821
+ coo._setdiag(values, k)
822
+ arrays = coo._coo_to_compressed(self._swap)
823
+ self.indptr, self.indices, self.data, _ = arrays
824
+
825
+ def _prepare_indices(self, i, j):
826
+ M, N = self._swap(self._shape_as_2d)
827
+
828
+ def check_bounds(indices, bound):
829
+ idx = indices.max()
830
+ if idx >= bound:
831
+ raise IndexError(f'index ({idx}) out of range (>= {bound})')
832
+ idx = indices.min()
833
+ if idx < -bound:
834
+ raise IndexError(f'index ({idx}) out of range (< -{bound})')
835
+
836
+ i = np.atleast_1d(np.asarray(i, dtype=self.indices.dtype)).ravel()
837
+ j = np.atleast_1d(np.asarray(j, dtype=self.indices.dtype)).ravel()
838
+ check_bounds(i, M)
839
+ check_bounds(j, N)
840
+ return i, j, M, N
841
+
842
+ def _set_many(self, i, j, x):
843
+ """Sets value at each (i, j) to x
844
+
845
+ Here (i,j) index major and minor respectively, and must not contain
846
+ duplicate entries.
847
+ """
848
+ i, j, M, N = self._prepare_indices(i, j)
849
+ x = np.atleast_1d(np.asarray(x, dtype=self.dtype)).ravel()
850
+
851
+ n_samples = x.size
852
+ offsets = np.empty(n_samples, dtype=self.indices.dtype)
853
+ ret = csr_sample_offsets(M, N, self.indptr, self.indices, n_samples,
854
+ i, j, offsets)
855
+ if ret == 1:
856
+ # rinse and repeat
857
+ self.sum_duplicates()
858
+ csr_sample_offsets(M, N, self.indptr, self.indices, n_samples,
859
+ i, j, offsets)
860
+
861
+ if -1 not in offsets:
862
+ # only affects existing non-zero cells
863
+ self.data[offsets] = x
864
+ return
865
+
866
+ else:
867
+ warn(f"Changing the sparsity structure of a {self.__class__.__name__} is"
868
+ " expensive. lil and dok are more efficient.",
869
+ SparseEfficiencyWarning, stacklevel=3)
870
+ # replace where possible
871
+ mask = offsets > -1
872
+ self.data[offsets[mask]] = x[mask]
873
+ # only insertions remain
874
+ mask = ~mask
875
+ i = i[mask]
876
+ i[i < 0] += M
877
+ j = j[mask]
878
+ j[j < 0] += N
879
+ self._insert_many(i, j, x[mask])
880
+
881
+ def _zero_many(self, i, j):
882
+ """Sets value at each (i, j) to zero, preserving sparsity structure.
883
+
884
+ Here (i,j) index major and minor respectively.
885
+ """
886
+ i, j, M, N = self._prepare_indices(i, j)
887
+
888
+ n_samples = len(i)
889
+ offsets = np.empty(n_samples, dtype=self.indices.dtype)
890
+ ret = csr_sample_offsets(M, N, self.indptr, self.indices, n_samples,
891
+ i, j, offsets)
892
+ if ret == 1:
893
+ # rinse and repeat
894
+ self.sum_duplicates()
895
+ csr_sample_offsets(M, N, self.indptr, self.indices, n_samples,
896
+ i, j, offsets)
897
+
898
+ # only assign zeros to the existing sparsity structure
899
+ self.data[offsets[offsets > -1]] = 0
900
+
901
+ def _insert_many(self, i, j, x):
902
+ """Inserts new nonzero at each (i, j) with value x
903
+
904
+ Here (i,j) index major and minor respectively.
905
+ i, j and x must be non-empty, 1d arrays.
906
+ Inserts each major group (e.g. all entries per row) at a time.
907
+ Maintains has_sorted_indices property.
908
+ Modifies i, j, x in place.
909
+ """
910
+ order = np.argsort(i, kind='mergesort') # stable for duplicates
911
+ i = i.take(order, mode='clip')
912
+ j = j.take(order, mode='clip')
913
+ x = x.take(order, mode='clip')
914
+
915
+ do_sort = self.has_sorted_indices
916
+
917
+ # Update index data type
918
+ idx_dtype = self._get_index_dtype((self.indices, self.indptr),
919
+ maxval=(self.indptr[-1] + x.size))
920
+ self.indptr = np.asarray(self.indptr, dtype=idx_dtype)
921
+ self.indices = np.asarray(self.indices, dtype=idx_dtype)
922
+ i = np.asarray(i, dtype=idx_dtype)
923
+ j = np.asarray(j, dtype=idx_dtype)
924
+
925
+ # Collate old and new in chunks by major index
926
+ indices_parts = []
927
+ data_parts = []
928
+ ui, ui_indptr = np.unique(i, return_index=True)
929
+ ui_indptr = np.append(ui_indptr, len(j))
930
+ new_nnzs = np.diff(ui_indptr)
931
+ prev = 0
932
+ for c, (ii, js, je) in enumerate(zip(ui, ui_indptr, ui_indptr[1:])):
933
+ # old entries
934
+ start = self.indptr[prev]
935
+ stop = self.indptr[ii]
936
+ indices_parts.append(self.indices[start:stop])
937
+ data_parts.append(self.data[start:stop])
938
+
939
+ # handle duplicate j: keep last setting
940
+ uj, uj_indptr = np.unique(j[js:je][::-1], return_index=True)
941
+ if len(uj) == je - js:
942
+ indices_parts.append(j[js:je])
943
+ data_parts.append(x[js:je])
944
+ else:
945
+ indices_parts.append(j[js:je][::-1][uj_indptr])
946
+ data_parts.append(x[js:je][::-1][uj_indptr])
947
+ new_nnzs[c] = len(uj)
948
+
949
+ prev = ii
950
+
951
+ # remaining old entries
952
+ start = self.indptr[ii]
953
+ indices_parts.append(self.indices[start:])
954
+ data_parts.append(self.data[start:])
955
+
956
+ # update attributes
957
+ self.indices = np.concatenate(indices_parts)
958
+ self.data = np.concatenate(data_parts)
959
+ nnzs = np.empty(self.indptr.shape, dtype=idx_dtype)
960
+ nnzs[0] = idx_dtype(0)
961
+ indptr_diff = np.diff(self.indptr)
962
+ indptr_diff[ui] += new_nnzs
963
+ nnzs[1:] = indptr_diff
964
+ self.indptr = np.cumsum(nnzs, out=nnzs)
965
+
966
+ if do_sort:
967
+ # TODO: only sort where necessary
968
+ self.has_sorted_indices = False
969
+ self.sort_indices()
970
+
971
+ self.check_format(full_check=False)
972
+
973
+ ######################
974
+ # Conversion methods #
975
+ ######################
976
+
977
+ def tocoo(self, copy=True):
978
+ if self.ndim == 1:
979
+ csr = self.tocsr()
980
+ return self._coo_container((csr.data, (csr.indices,)), csr.shape, copy=copy)
981
+ major_dim, minor_dim = self._swap(self.shape)
982
+ minor_indices = self.indices
983
+ major_indices = np.empty(len(minor_indices), dtype=self.indices.dtype)
984
+ expandptr(major_dim, self.indptr, major_indices)
985
+ coords = self._swap((major_indices, minor_indices))
986
+
987
+ return self._coo_container(
988
+ (self.data, coords), self.shape, copy=copy, dtype=self.dtype
989
+ )
990
+
991
+ tocoo.__doc__ = _spbase.tocoo.__doc__
992
+
993
+ def toarray(self, order=None, out=None):
994
+ if out is None and order is None:
995
+ order = self._swap('cf')[0]
996
+ out = self._process_toarray_args(order, out)
997
+ if not (out.flags.c_contiguous or out.flags.f_contiguous):
998
+ raise ValueError('Output array must be C or F contiguous')
999
+ # align ideal order with output array order
1000
+ if out.flags.c_contiguous:
1001
+ x = self.tocsr()
1002
+ y = out
1003
+ else:
1004
+ x = self.tocsc()
1005
+ y = out.T
1006
+ M, N = x._swap(x._shape_as_2d)
1007
+ csr_todense(M, N, x.indptr, x.indices, x.data, y)
1008
+ return out
1009
+
1010
+ toarray.__doc__ = _spbase.toarray.__doc__
1011
+
1012
+ ##############################################################
1013
+ # methods that examine or modify the internal data structure #
1014
+ ##############################################################
1015
+
1016
+ def eliminate_zeros(self):
1017
+ """Remove zero entries from the array/matrix
1018
+
1019
+ This is an *in place* operation.
1020
+ """
1021
+ M, N = self._swap(self._shape_as_2d)
1022
+ csr_eliminate_zeros(M, N, self.indptr, self.indices, self.data)
1023
+ self.prune() # nnz may have changed
1024
+
1025
+ @property
1026
+ def has_canonical_format(self) -> bool:
1027
+ """Whether the array/matrix has sorted indices and no duplicates
1028
+
1029
+ Returns
1030
+ - True: if the above applies
1031
+ - False: otherwise
1032
+
1033
+ has_canonical_format implies has_sorted_indices, so if the latter flag
1034
+ is False, so will the former be; if the former is found True, the
1035
+ latter flag is also set.
1036
+ """
1037
+ # first check to see if result was cached
1038
+ if not getattr(self, '_has_sorted_indices', True):
1039
+ # not sorted => not canonical
1040
+ self._has_canonical_format = False
1041
+ elif not hasattr(self, '_has_canonical_format'):
1042
+ M = len(self.indptr) - 1
1043
+ self.has_canonical_format = bool(
1044
+ csr_has_canonical_format(M, self.indptr, self.indices)
1045
+ )
1046
+ return self._has_canonical_format
1047
+
1048
+ @has_canonical_format.setter
1049
+ def has_canonical_format(self, val: bool):
1050
+ self._has_canonical_format = bool(val)
1051
+ if val:
1052
+ self.has_sorted_indices = True
1053
+
1054
+ def sum_duplicates(self):
1055
+ """Eliminate duplicate entries by adding them together
1056
+
1057
+ This is an *in place* operation.
1058
+ """
1059
+ if self.has_canonical_format:
1060
+ return
1061
+ self.sort_indices()
1062
+
1063
+ M, N = self._swap(self._shape_as_2d)
1064
+ csr_sum_duplicates(M, N, self.indptr, self.indices, self.data)
1065
+
1066
+ self.prune() # nnz may have changed
1067
+ self.has_canonical_format = True
1068
+
1069
+ @property
1070
+ def has_sorted_indices(self) -> bool:
1071
+ """Whether the indices are sorted
1072
+
1073
+ Returns
1074
+ - True: if the indices of the array/matrix are in sorted order
1075
+ - False: otherwise
1076
+ """
1077
+ # first check to see if result was cached
1078
+ if not hasattr(self, '_has_sorted_indices'):
1079
+ M = len(self.indptr) - 1
1080
+ self._has_sorted_indices = bool(
1081
+ csr_has_sorted_indices(M, self.indptr, self.indices)
1082
+ )
1083
+ return self._has_sorted_indices
1084
+
1085
+ @has_sorted_indices.setter
1086
+ def has_sorted_indices(self, val: bool):
1087
+ self._has_sorted_indices = bool(val)
1088
+
1089
+
1090
+ def sorted_indices(self):
1091
+ """Return a copy of this array/matrix with sorted indices
1092
+ """
1093
+ A = self.copy()
1094
+ A.sort_indices()
1095
+ return A
1096
+
1097
+ # an alternative that has linear complexity is the following
1098
+ # although the previous option is typically faster
1099
+ # return self.toother().toother()
1100
+
1101
+ def sort_indices(self):
1102
+ """Sort the indices of this array/matrix *in place*
1103
+ """
1104
+ if not self.has_sorted_indices:
1105
+ M = len(self.indptr) - 1
1106
+ csr_sort_indices(M, self.indptr, self.indices, self.data)
1107
+ self.has_sorted_indices = True
1108
+
1109
+ def prune(self):
1110
+ """Remove empty space after all non-zero elements.
1111
+ """
1112
+ major_dim = self._swap(self._shape_as_2d)[0]
1113
+
1114
+ if len(self.indptr) != major_dim + 1:
1115
+ raise ValueError('index pointer has invalid length')
1116
+ if len(self.indices) < self.nnz:
1117
+ raise ValueError('indices array has fewer than nnz elements')
1118
+ if len(self.data) < self.nnz:
1119
+ raise ValueError('data array has fewer than nnz elements')
1120
+
1121
+ self.indices = _prune_array(self.indices[:self.nnz])
1122
+ self.data = _prune_array(self.data[:self.nnz])
1123
+
1124
+ def resize(self, *shape):
1125
+ shape = check_shape(shape, allow_nd=self._allow_nd)
1126
+
1127
+ if hasattr(self, 'blocksize'):
1128
+ bm, bn = self.blocksize
1129
+ new_M, rm = divmod(shape[0], bm)
1130
+ new_N, rn = divmod(shape[1], bn)
1131
+ if rm or rn:
1132
+ raise ValueError(f"shape must be divisible into {self.blocksize}"
1133
+ f" blocks. Got {shape}")
1134
+ M, N = self.shape[0] // bm, self.shape[1] // bn
1135
+ else:
1136
+ new_M, new_N = self._swap(shape if len(shape)>1 else (1, shape[0]))
1137
+ M, N = self._swap(self._shape_as_2d)
1138
+
1139
+ if new_M < M:
1140
+ self.indices = self.indices[:self.indptr[new_M]]
1141
+ self.data = self.data[:self.indptr[new_M]]
1142
+ self.indptr = self.indptr[:new_M + 1]
1143
+ elif new_M > M:
1144
+ self.indptr = np.resize(self.indptr, new_M + 1)
1145
+ self.indptr[M + 1:].fill(self.indptr[M])
1146
+
1147
+ if new_N < N:
1148
+ mask = self.indices < new_N
1149
+ if not np.all(mask):
1150
+ self.indices = self.indices[mask]
1151
+ self.data = self.data[mask]
1152
+ major_index, val = self._minor_reduce(np.add, mask)
1153
+ self.indptr.fill(0)
1154
+ self.indptr[1:][major_index] = val
1155
+ np.cumsum(self.indptr, out=self.indptr)
1156
+
1157
+ self._shape = shape
1158
+
1159
+ resize.__doc__ = _spbase.resize.__doc__
1160
+
1161
+ ###################
1162
+ # utility methods #
1163
+ ###################
1164
+
1165
+ # needed by _data_matrix
1166
+ def _with_data(self, data, copy=True):
1167
+ """Returns a matrix with the same sparsity structure as self,
1168
+ but with different data. By default the structure arrays
1169
+ (i.e. .indptr and .indices) are copied.
1170
+ """
1171
+ if copy:
1172
+ return self.__class__((data, self.indices.copy(),
1173
+ self.indptr.copy()),
1174
+ shape=self.shape,
1175
+ dtype=data.dtype)
1176
+ else:
1177
+ return self.__class__((data, self.indices, self.indptr),
1178
+ shape=self.shape, dtype=data.dtype)
1179
+
1180
+ def _binopt(self, other, op):
1181
+ """apply the binary operation fn to two sparse matrices."""
1182
+ other = self.__class__(other)
1183
+
1184
+ # e.g. csr_plus_csr, csr_minus_csr, etc.
1185
+ fn = getattr(_sparsetools, "csr" + op + "csr")
1186
+
1187
+ maxnnz = self.nnz + other.nnz
1188
+ idx_dtype = self._get_index_dtype((self.indptr, self.indices,
1189
+ other.indptr, other.indices),
1190
+ maxval=maxnnz)
1191
+ indptr = np.empty(self.indptr.shape, dtype=idx_dtype)
1192
+ indices = np.empty(maxnnz, dtype=idx_dtype)
1193
+
1194
+ bool_ops = ['_ne_', '_lt_', '_gt_', '_le_', '_ge_']
1195
+ if op in bool_ops:
1196
+ data = np.empty(maxnnz, dtype=np.bool_)
1197
+ else:
1198
+ data = np.empty(maxnnz, dtype=upcast(self.dtype, other.dtype))
1199
+
1200
+ M, N = self._swap(self._shape_as_2d)
1201
+ fn(M, N,
1202
+ np.asarray(self.indptr, dtype=idx_dtype),
1203
+ np.asarray(self.indices, dtype=idx_dtype),
1204
+ self.data,
1205
+ np.asarray(other.indptr, dtype=idx_dtype),
1206
+ np.asarray(other.indices, dtype=idx_dtype),
1207
+ other.data,
1208
+ indptr, indices, data)
1209
+
1210
+ A = self.__class__((data, indices, indptr), shape=self.shape)
1211
+ A.prune()
1212
+
1213
+ return A
1214
+
1215
+ def _divide_sparse(self, other):
1216
+ """
1217
+ Divide this matrix by a second sparse matrix.
1218
+ """
1219
+ if other.shape != self.shape:
1220
+ raise ValueError(f"inconsistent shapes {self.shape} and {other.shape}")
1221
+
1222
+ r = self._binopt(other, '_eldiv_')
1223
+
1224
+ if np.issubdtype(r.dtype, np.inexact):
1225
+ # Eldiv leaves entries outside the combined sparsity
1226
+ # pattern empty, so they must be filled manually.
1227
+ # Everything outside of other's sparsity is NaN, and everything
1228
+ # inside it is either zero or defined by eldiv.
1229
+ out = np.empty(self.shape, dtype=self.dtype)
1230
+ out.fill(np.nan)
1231
+ coords = other.nonzero()
1232
+ if self.ndim == 1:
1233
+ coords = (coords[-1],)
1234
+ out[coords] = 0
1235
+ r = r.tocoo()
1236
+ out[r.coords] = r.data
1237
+ return self._container(out)
1238
+ else:
1239
+ # integers types go with nan <-> 0
1240
+ out = r
1241
+ return out
1242
+
1243
+ def _broadcast_to(self, shape, copy=False):
1244
+ if self.shape == shape:
1245
+ return self.copy() if copy else self
1246
+
1247
+ shape = check_shape(shape, allow_nd=(self._allow_nd))
1248
+
1249
+ if broadcast_shapes(self.shape, shape) != shape:
1250
+ raise ValueError("cannot be broadcast")
1251
+
1252
+ if len(self.shape) == 1 and len(shape) == 1:
1253
+ self.sum_duplicates()
1254
+ if self.nnz == 0: # array has no non zero elements
1255
+ return self.__class__(shape, dtype=self.dtype, copy=False)
1256
+
1257
+ N = shape[0]
1258
+ data = np.full(N, self.data[0])
1259
+ indices = np.arange(0,N)
1260
+ indptr = np.array([0, N])
1261
+ return self._csr_container((data, indices, indptr), shape=shape, copy=False)
1262
+
1263
+ # treat 1D as a 2D row
1264
+ old_shape = self._shape_as_2d
1265
+
1266
+ if len(shape) != 2:
1267
+ ndim = len(shape)
1268
+ raise ValueError(f'CSR/CSC broadcast_to cannot have shape >2D. Got {ndim}D')
1269
+
1270
+ if self.nnz == 0: # array has no non zero elements
1271
+ return self.__class__(shape, dtype=self.dtype, copy=False)
1272
+
1273
+ self.sum_duplicates()
1274
+ M, N = self._swap(shape)
1275
+ oM, oN = self._swap(old_shape)
1276
+ if all(s == 1 for s in old_shape):
1277
+ # Broadcast a single element to the entire shape
1278
+ data = np.full(M * N, self.data[0])
1279
+ indices = np.tile(np.arange(N), M)
1280
+ indptr = np.arange(0, len(data) + 1, N)
1281
+ elif oM == 1 and oN == N:
1282
+ # Broadcast row-wise (columns for CSC)
1283
+ data = np.tile(self.data, M)
1284
+ indices = np.tile(self.indices, M)
1285
+ indptr = np.arange(0, len(data) + 1, len(self.data))
1286
+ elif oN == 1 and oM == M:
1287
+ # Broadcast column-wise (rows for CSC)
1288
+ data = np.repeat(self.data, N)
1289
+ indices = np.tile(np.arange(N), len(self.data))
1290
+ indptr = self.indptr * N
1291
+ return self.__class__((data, indices, indptr), shape=shape, copy=False)
1292
+
1293
+
1294
+ def _make_diagonal_csr(data, is_array=False):
1295
+ """build diagonal csc_array/csr_array => self._csr_container
1296
+
1297
+ Parameter `data` should be a raveled numpy array holding the
1298
+ values on the diagonal of the resulting sparse matrix.
1299
+ """
1300
+ from ._csr import csr_array, csr_matrix
1301
+ csr_array = csr_array if is_array else csr_matrix
1302
+
1303
+ N = len(data)
1304
+ idx_dtype = get_index_dtype(maxval=N)
1305
+ indptr = np.arange(N + 1, dtype=idx_dtype)
1306
+ indices = indptr[:-1]
1307
+
1308
+ return csr_array((data, indices, indptr), shape=(N, N))
1309
+
1310
+
1311
+ def _process_slice(sl, num):
1312
+ if sl is None:
1313
+ i0, i1 = 0, num
1314
+ elif isinstance(sl, slice):
1315
+ i0, i1, stride = sl.indices(num)
1316
+ if stride != 1:
1317
+ raise ValueError('slicing with step != 1 not supported')
1318
+ i0 = min(i0, i1) # give an empty slice when i0 > i1
1319
+ elif isintlike(sl):
1320
+ if sl < 0:
1321
+ sl += num
1322
+ i0, i1 = sl, sl + 1
1323
+ if i0 < 0 or i1 > num:
1324
+ raise IndexError(f'index out of bounds: 0 <= {i0} < {i1} <= {num}')
1325
+ else:
1326
+ raise TypeError('expected slice or scalar')
1327
+
1328
+ return i0, i1