qwen-sci 0.2.2__py3-none-any.whl

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Files changed (549) hide show
  1. qwen_sci-0.2.2.dist-info/METADATA +492 -0
  2. qwen_sci-0.2.2.dist-info/RECORD +549 -0
  3. qwen_sci-0.2.2.dist-info/WHEEL +4 -0
  4. qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
  5. qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
  6. src/1.txt +1 -0
  7. src/__init__.py +1 -0
  8. src/__main__.py +5 -0
  9. src/agents/__init__.py +1 -0
  10. src/agents/experiment_design_agent/__init__.py +268 -0
  11. src/agents/experiment_design_agent/artifacts.py +747 -0
  12. src/agents/experiment_design_agent/cache.py +319 -0
  13. src/agents/experiment_design_agent/completeness.py +130 -0
  14. src/agents/experiment_design_agent/contracts.py +771 -0
  15. src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
  16. src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
  17. src/agents/experiment_design_agent/discipline_catalog.py +178 -0
  18. src/agents/experiment_design_agent/evidence_cards.py +338 -0
  19. src/agents/experiment_design_agent/evidence_planner.py +452 -0
  20. src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
  21. src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
  22. src/agents/experiment_design_agent/idea_adapter.py +100 -0
  23. src/agents/experiment_design_agent/idea_intake.py +87 -0
  24. src/agents/experiment_design_agent/llm_json.py +328 -0
  25. src/agents/experiment_design_agent/orchestrator.py +1220 -0
  26. src/agents/experiment_design_agent/reasoning_context.py +183 -0
  27. src/agents/experiment_design_agent/reasoning_validation.py +546 -0
  28. src/agents/experiment_design_agent/run.py +481 -0
  29. src/agents/experiment_design_agent/run_logging.py +292 -0
  30. src/agents/experiment_design_agent/scope_gate.py +198 -0
  31. src/agents/experiment_design_agent/study_type_composer.py +1360 -0
  32. src/agents/experiment_design_agent/survey_evidence.py +1381 -0
  33. src/agents/experiment_design_agent/template_router.py +195 -0
  34. src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
  35. src/agents/idea_agent/__init__.py +1 -0
  36. src/agents/idea_agent/agent/__init__.py +6 -0
  37. src/agents/idea_agent/agent/artifacts.py +308 -0
  38. src/agents/idea_agent/agent/base.py +122 -0
  39. src/agents/idea_agent/agent/ligagent.py +488 -0
  40. src/agents/idea_agent/agent/mcts.py +2060 -0
  41. src/agents/idea_agent/agent/prompts/__init__.py +48 -0
  42. src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
  43. src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
  44. src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
  45. src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
  46. src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
  47. src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
  48. src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
  49. src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
  50. src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
  51. src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
  52. src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
  53. src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
  54. src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
  55. src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
  56. src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
  57. src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
  58. src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
  59. src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
  60. src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
  61. src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
  62. src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
  63. src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
  64. src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
  65. src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
  66. src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
  67. src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
  68. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
  69. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
  70. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
  71. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
  72. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
  73. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
  74. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
  75. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
  76. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
  77. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
  78. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
  79. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
  80. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
  81. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
  82. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
  83. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
  84. src/agents/idea_agent/example/idea_result.json +900 -0
  85. src/agents/idea_agent/run.py +276 -0
  86. src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
  87. src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
  88. src/agents/idea_agent/tests/test_idea_debate.py +480 -0
  89. src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
  90. src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
  91. src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
  92. src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
  93. src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
  94. src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
  95. src/agents/idea_agent/tests/test_result_persistence.py +183 -0
  96. src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
  97. src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
  98. src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
  99. src/agents/idea_agent/utils/core/__init__.py +1 -0
  100. src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
  101. src/agents/idea_agent/utils/core/chat_errors.py +95 -0
  102. src/agents/idea_agent/utils/core/chat_router.py +130 -0
  103. src/agents/idea_agent/utils/core/chat_transport.py +188 -0
  104. src/agents/idea_agent/utils/core/config_loader.py +166 -0
  105. src/agents/idea_agent/utils/core/json_utils.py +28 -0
  106. src/agents/idea_agent/utils/core/logger.py +287 -0
  107. src/agents/idea_agent/utils/core/progress.py +58 -0
  108. src/agents/idea_agent/utils/core/response_parsing.py +57 -0
  109. src/agents/idea_agent/utils/core/run_inputs.py +198 -0
  110. src/agents/idea_agent/utils/mcts/__init__.py +1 -0
  111. src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
  112. src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
  113. src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
  114. src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
  115. src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
  116. src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
  117. src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
  118. src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
  119. src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
  120. src/agents/idea_agent/utils/papers/__init__.py +1 -0
  121. src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
  122. src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
  123. src/agents/idea_agent/utils/prompting/__init__.py +1 -0
  124. src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
  125. src/agents/idea_agent/utils/workflow/__init__.py +1 -0
  126. src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
  127. src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
  128. src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
  129. src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
  130. src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
  131. src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
  132. src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
  133. src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
  134. src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
  135. src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
  136. src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
  137. src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
  138. src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
  139. src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
  140. src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
  141. src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
  142. src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
  143. src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
  144. src/agents/research_plan_author/__init__.py +50 -0
  145. src/agents/research_plan_author/artifacts.py +270 -0
  146. src/agents/research_plan_author/authoring_blueprint.py +1246 -0
  147. src/agents/research_plan_author/bibtex_renderer.py +252 -0
  148. src/agents/research_plan_author/contract_repair.py +131 -0
  149. src/agents/research_plan_author/contracts.py +745 -0
  150. src/agents/research_plan_author/cross_section_editor.py +232 -0
  151. src/agents/research_plan_author/document_quality.py +987 -0
  152. src/agents/research_plan_author/idea_evolution.py +223 -0
  153. src/agents/research_plan_author/input_loader.py +76 -0
  154. src/agents/research_plan_author/latex_compiler.py +260 -0
  155. src/agents/research_plan_author/latex_safety.py +159 -0
  156. src/agents/research_plan_author/llm_json.py +74 -0
  157. src/agents/research_plan_author/markdown_renderer.py +275 -0
  158. src/agents/research_plan_author/pdf_validator.py +149 -0
  159. src/agents/research_plan_author/render.py +166 -0
  160. src/agents/research_plan_author/render_artifacts.py +187 -0
  161. src/agents/research_plan_author/run.py +765 -0
  162. src/agents/research_plan_author/run_logging.py +209 -0
  163. src/agents/research_plan_author/section_cache.py +184 -0
  164. src/agents/research_plan_author/section_composer.py +1764 -0
  165. src/agents/research_plan_author/section_router.py +209 -0
  166. src/agents/research_plan_author/semantic_validator.py +254 -0
  167. src/agents/research_plan_author/source_bundle.py +46 -0
  168. src/agents/research_plan_author/source_registry.py +208 -0
  169. src/agents/research_plan_author/survey_source_loader.py +137 -0
  170. src/agents/research_plan_author/template_adapter.py +173 -0
  171. src/agents/research_plan_author/template_profile.py +204 -0
  172. src/agents/research_plan_author/tex_renderer.py +496 -0
  173. src/agents/research_plan_author/theory_presentation.py +134 -0
  174. src/agents/research_plan_author/theory_spine.py +703 -0
  175. src/agents/survey_agent/Dockerfile +54 -0
  176. src/agents/survey_agent/README.md +350 -0
  177. src/agents/survey_agent/config/deep_survey.yaml +217 -0
  178. src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
  179. src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
  180. src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
  181. src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
  182. src/agents/survey_agent/env_report.md +348 -0
  183. src/agents/survey_agent/modules/__init__.py +0 -0
  184. src/agents/survey_agent/modules/code_collector.py +2194 -0
  185. src/agents/survey_agent/modules/code_report_generator.py +1282 -0
  186. src/agents/survey_agent/modules/data_manager.py +1713 -0
  187. src/agents/survey_agent/modules/database.py +167 -0
  188. src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
  189. src/agents/survey_agent/modules/fulltext_http.py +134 -0
  190. src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
  191. src/agents/survey_agent/modules/judge.py +434 -0
  192. src/agents/survey_agent/modules/outcome_RAG.py +236 -0
  193. src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
  194. src/agents/survey_agent/modules/pe.py +1729 -0
  195. src/agents/survey_agent/modules/pseudo_creator.py +782 -0
  196. src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
  197. src/agents/survey_agent/modules/refine_agent.py +1952 -0
  198. src/agents/survey_agent/modules/survey_generator.py +5691 -0
  199. src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
  200. src/agents/survey_agent/modules/visual_prompts.py +327 -0
  201. src/agents/survey_agent/modules/work_analyzer.py +2750 -0
  202. src/agents/survey_agent/modules/work_collector.py +5649 -0
  203. src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
  204. src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
  205. src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
  206. src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
  207. src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
  208. src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
  209. src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
  210. src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
  211. src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
  212. src/agents/survey_agent/utils/__init__.py +0 -0
  213. src/agents/survey_agent/utils/ablation_utils.py +317 -0
  214. src/agents/survey_agent/utils/api_call.py +2518 -0
  215. src/agents/survey_agent/utils/chat_utils.py +82 -0
  216. src/agents/survey_agent/utils/config_utils.py +70 -0
  217. src/agents/survey_agent/utils/convert_to_md.py +29 -0
  218. src/agents/survey_agent/utils/err_info.py +24 -0
  219. src/agents/survey_agent/utils/file_utils.py +176 -0
  220. src/agents/survey_agent/utils/gpu_utils.py +145 -0
  221. src/agents/survey_agent/utils/graph_visualizer.py +279 -0
  222. src/agents/survey_agent/utils/html_utils.py +181 -0
  223. src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
  224. src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
  225. src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
  226. src/agents/survey_agent/utils/mineru_utils.py +396 -0
  227. src/agents/survey_agent/utils/paper.py +144 -0
  228. src/agents/survey_agent/utils/read_yaml.py +15 -0
  229. src/agents/survey_agent/utils/repo_utils.py +167 -0
  230. src/agents/survey_agent/utils/rich_logger.py +77 -0
  231. src/agents/survey_agent/utils/step2v2.py +874 -0
  232. src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
  233. src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
  234. src/agents/survey_agent/utils/utils.py +118 -0
  235. src/agents/survey_agent/utils/work.py +2 -0
  236. src/cli.py +1611 -0
  237. src/config/__init__.py +213 -0
  238. src/config/default.yaml +1122 -0
  239. src/harness/LICENSE +21 -0
  240. src/harness/VENDORED.md +14 -0
  241. src/harness/src/__init__.py +0 -0
  242. src/harness/src/openharness/__init__.py +0 -0
  243. src/harness/src/openharness/__main__.py +6 -0
  244. src/harness/src/openharness/api/__init__.py +21 -0
  245. src/harness/src/openharness/api/client.py +281 -0
  246. src/harness/src/openharness/api/codex_client.py +407 -0
  247. src/harness/src/openharness/api/copilot_auth.py +240 -0
  248. src/harness/src/openharness/api/copilot_client.py +134 -0
  249. src/harness/src/openharness/api/errors.py +19 -0
  250. src/harness/src/openharness/api/openai_client.py +577 -0
  251. src/harness/src/openharness/api/provider.py +186 -0
  252. src/harness/src/openharness/api/registry.py +437 -0
  253. src/harness/src/openharness/api/usage.py +17 -0
  254. src/harness/src/openharness/auth/__init__.py +29 -0
  255. src/harness/src/openharness/auth/external.py +610 -0
  256. src/harness/src/openharness/auth/flows.py +189 -0
  257. src/harness/src/openharness/auth/manager.py +482 -0
  258. src/harness/src/openharness/auth/storage.py +269 -0
  259. src/harness/src/openharness/autopilot/__init__.py +23 -0
  260. src/harness/src/openharness/autopilot/service.py +2239 -0
  261. src/harness/src/openharness/autopilot/types.py +91 -0
  262. src/harness/src/openharness/bridge/__init__.py +20 -0
  263. src/harness/src/openharness/bridge/manager.py +106 -0
  264. src/harness/src/openharness/bridge/session_runner.py +46 -0
  265. src/harness/src/openharness/bridge/types.py +37 -0
  266. src/harness/src/openharness/bridge/work_secret.py +41 -0
  267. src/harness/src/openharness/channels/UPSTREAM +6 -0
  268. src/harness/src/openharness/channels/__init__.py +22 -0
  269. src/harness/src/openharness/channels/adapter.py +131 -0
  270. src/harness/src/openharness/channels/bus/__init__.py +6 -0
  271. src/harness/src/openharness/channels/bus/events.py +38 -0
  272. src/harness/src/openharness/channels/bus/queue.py +44 -0
  273. src/harness/src/openharness/channels/impl/__init__.py +6 -0
  274. src/harness/src/openharness/channels/impl/base.py +141 -0
  275. src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
  276. src/harness/src/openharness/channels/impl/discord.py +311 -0
  277. src/harness/src/openharness/channels/impl/email.py +410 -0
  278. src/harness/src/openharness/channels/impl/feishu.py +1342 -0
  279. src/harness/src/openharness/channels/impl/manager.py +257 -0
  280. src/harness/src/openharness/channels/impl/matrix.py +700 -0
  281. src/harness/src/openharness/channels/impl/mochat.py +897 -0
  282. src/harness/src/openharness/channels/impl/qq.py +141 -0
  283. src/harness/src/openharness/channels/impl/slack.py +284 -0
  284. src/harness/src/openharness/channels/impl/telegram.py +525 -0
  285. src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
  286. src/harness/src/openharness/cli.py +2551 -0
  287. src/harness/src/openharness/commands/__init__.py +21 -0
  288. src/harness/src/openharness/commands/registry.py +2783 -0
  289. src/harness/src/openharness/config/__init__.py +34 -0
  290. src/harness/src/openharness/config/paths.py +160 -0
  291. src/harness/src/openharness/config/schema.py +119 -0
  292. src/harness/src/openharness/config/settings.py +1104 -0
  293. src/harness/src/openharness/coordinator/__init__.py +12 -0
  294. src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
  295. src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
  296. src/harness/src/openharness/engine/__init__.py +80 -0
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  533. src/pipeline/science_run.py +918 -0
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  537. src/pipeline/sh_graph_provenance.py +648 -0
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  541. src/pipeline/survey_gap_adjudication.py +647 -0
  542. src/pipeline/survey_gap_candidates.py +840 -0
  543. src/pipeline/survey_gap_ledger.py +683 -0
  544. src/pipeline/survey_gap_triage.py +401 -0
  545. src/pipeline/survey_handoff_persistence.py +481 -0
  546. src/pipeline/survey_handoff_projection.py +457 -0
  547. src/pipeline/survey_idea_handoff.py +1112 -0
  548. src/pipeline/survey_idea_loader.py +289 -0
  549. src/research_run_ids.py +11 -0
@@ -0,0 +1,327 @@
1
+ """Prompts for evidence-bounded, post-draft survey visualisation.
2
+
3
+ The image model is deliberately given a compact ``VisualBrief`` instead of the
4
+ whole survey. This keeps generated figures tied to an auditable part of the
5
+ finished manuscript and prevents the image model from inventing a second,
6
+ untraced narrative.
7
+ """
8
+
9
+ from __future__ import annotations
10
+
11
+ import json
12
+ from typing import Any, Mapping
13
+
14
+
15
+ FIGURE_TYPE_LAYOUT_INSTRUCTIONS = {
16
+ "overview_framework": (
17
+ "Build a polished scientific visual abstract with one central thesis or system "
18
+ "anchor, surrounding evidence and process modules, and a visually distinct "
19
+ "outcome or interface region. Use nested regions, varied module scales, "
20
+ "symbolic icons, structured connectors, and a compact semantic strip. Avoid "
21
+ "a flat row of identical boxes."
22
+ ),
23
+ "mechanism": (
24
+ "Build a visually rich causal systems map rather than a simple linear flowchart. "
25
+ "Place the dominant mechanism or outcome as a central anchor, arrange upstream "
26
+ "drivers as an asymmetric evidence cluster, and place intermediate processes "
27
+ "as layered or nested modules. Use solid connectors for direct support, dashed "
28
+ "or translucent connectors for qualified or unresolved relations, and include "
29
+ "one restrained inset, symbolic icon, or uncertainty region when supported by "
30
+ "the supplied content. Avoid repeated equal-sized cards."
31
+ ),
32
+ "causal_pathway": "Arrange supplied drivers, mediators, and outcomes into a readable causal pathway; keep qualified or unresolved links visibly distinct.",
33
+ "evidence_to_inference": "Organize three levels: source observations or cited evidence, intermediate analysis or theory, and survey-level inference; never turn background context into direct evidence.",
34
+ "method_comparison": "Use balanced parallel panels or converging pathways for the supplied approaches; show inputs, analytical focus, contribution, and stated limitation without unsupported ranking.",
35
+ "multiscale_synthesis": "Show supplied scales, levels, stages, or system layers in a clear nested or progressive arrangement; connect levels only where explicitly supported.",
36
+ "conceptual_workflow": "Arrange supplied conceptual stages into a practical workflow with a clear beginning, intermediate steps, and outcome.",
37
+ "research_landscape": "Map supplied approaches, themes, or evidence clusters as a conceptual landscape, not a quantitative ranking or bibliometric chart.",
38
+ "future_roadmap": "Organize established foundations, present limitations, and explicitly stated future directions into a forward-looking roadmap; show open questions as muted or dashed elements.",
39
+ }
40
+
41
+
42
+ VISUAL_CANDIDATE_PLANNER = """You are the visual editor for a completed academic survey.
43
+
44
+ Choose only the sections where a conceptual scientific figure would materially improve
45
+ reader understanding. This is a multidisciplinary task: do not assume a specific field.
46
+ Prefer a small, diverse figure set over an image after every heading.
47
+
48
+ Allowed figure types:
49
+ {allowed_figure_types}
50
+
51
+ Survey title:
52
+ {survey_title}
53
+
54
+ Approved outline context:
55
+ {outline_context}
56
+
57
+ Sections (paragraph indices restart at 1 inside each section):
58
+ {sections}
59
+
60
+ Task:
61
+ Aim for {min_figures} to {max_figures} candidates when the survey has enough eligible
62
+ material; never force a weak candidate merely to hit the target. A candidate is allowed only when it can
63
+ integrate multiple supplied paragraphs or at least three supplied entities/processes.
64
+ Choose distinct knowledge functions across the survey where possible. Do not select the
65
+ references section. Do not select a section that only lists papers, definitions, or
66
+ unsupported speculation. Do not choose a data chart when exact data are required.
67
+ {numeric_chart_policy}
68
+
69
+ Return exactly one JSON object in this schema:
70
+ {schema}
71
+
72
+ Use English for every reader-facing string. Do not add scientific facts absent from the
73
+ supplied section excerpts. ``source_paragraph_indices`` must identify the supplied
74
+ paragraphs that justify the proposed figure."""
75
+
76
+
77
+ VISUAL_BRIEF_BUILDER = """You are preparing a tightly evidence-bounded visual brief for a
78
+ publication-ready conceptual scientific figure in an academic survey.
79
+
80
+ Survey title: {survey_title}
81
+ Section title: {section_title}
82
+ Selected figure type: {figure_type}
83
+ Proposed purpose: {proposed_message}
84
+
85
+ Approved outline context for this section:
86
+ {outline_context}
87
+
88
+ The only survey paragraphs that may supply scientific content are below:
89
+ {source_paragraphs}
90
+
91
+ Evidence-plan context (this gives permitted evidence boundaries, not extra facts):
92
+ {evidence_context}
93
+
94
+ Task:
95
+ Create one concise but visually specific art-direction brief. It must explain
96
+ relationships already present in the supplied paragraphs, and it must make explicit
97
+ uncertainty, qualification, or evidence gaps when the paragraphs state them. It must
98
+ never introduce new measurements, numerical values, causal links, instruments,
99
+ entities, biological structures, physical processes, or comparative rankings.
100
+
101
+ The composition_en field must be an actionable visual blueprint, not a generic sentence
102
+ such as "Use a left-to-right layout." Specify:
103
+ 1. the dominant focal anchor;
104
+ 2. the main spatial arrangement;
105
+ 3. the hierarchy between primary, secondary, and uncertain relationships;
106
+ 4. at least one supported visual motif, such as an inset panel, symbolic icon,
107
+ layered region, loop, bridge, scale transition, or localized zoom;
108
+ 5. the connector language: solid, dashed, translucent, branching, converging, or looping;
109
+ 6. how colour and depth distinguish the major semantic roles;
110
+ 7. a controlled label budget using short English labels only.
111
+
112
+ Prefer a visually rich editorial infographic or systems map over a generic three-column
113
+ flowchart. Avoid equal-width repeated cards and avoid an empty canvas. Keep the layout
114
+ readable and evidence-bounded.
115
+
116
+ All reader-facing content must be English. Write a concise English caption and English
117
+ alt text. Caption text will be placed beneath the image, not drawn into the image.
118
+
119
+ For every relation, include an exact contiguous quote from the supplied source paragraphs,
120
+ retaining the source language, and the paragraph index containing that quote. The program, not you, derives
121
+ the evidence support kind from the evidence plan and claim trace. Do not return a relation
122
+ that cannot be grounded by an exact supplied quote.
123
+
124
+ Return exactly one JSON object in this schema:
125
+ {schema}"""
126
+
127
+
128
+ VISUAL_BRIEF_REPAIR = """Repair one rejected visual brief for a completed academic survey.
129
+
130
+ Survey title: {survey_title}
131
+ Section title: {section_title}
132
+ Selected figure type: {figure_type}
133
+
134
+ Source paragraphs (the only permitted scientific source):
135
+ {source_paragraphs}
136
+
137
+ Evidence-plan context:
138
+ {evidence_context}
139
+
140
+ Original brief response:
141
+ {original_payload}
142
+
143
+ Deterministic validation findings:
144
+ {rejection_reasons}
145
+
146
+ Return one corrected JSON object using this schema:
147
+ {schema}
148
+
149
+ Repair format and grounding only. Preserve the supplied scientific meaning. Every
150
+ relation must use an exact contiguous quote from one supplied paragraph and the correct
151
+ paragraph index. Do not invent entities, mechanisms, measurements, citations, or causal
152
+ links. Reader-facing fields must be concise English; source_quote must retain the source
153
+ paragraph language. The composition_en field must be an actionable art-direction
154
+ blueprint: name the focal anchor, spatial arrangement, visual hierarchy, connector
155
+ styles, one supported visual motif, and a short-label budget. Do not replace it with a
156
+ generic phrase such as "Use a left-to-right layout." Caption, alt text, and overlay
157
+ labels may be minimal, because the program supplies safe English fallbacks when they
158
+ are absent."""
159
+
160
+
161
+ ARTICLE_STYLE_PLANNER = """You are the art director for one multidisciplinary academic
162
+ survey. Create a single coherent visual style profile for polished scientific
163
+ infographics and systems maps that every figure in this survey will reuse.
164
+
165
+ Survey title: {survey_title}
166
+ Planned figures:
167
+ {figure_summaries}
168
+
169
+ Choose a palette appropriate to the topic, suitable for a rigorous, high-impact
170
+ scientific visual abstract: print-friendly, colour-blind-aware, layered enough to
171
+ support visual hierarchy, and readable on a light background. The palette must have
172
+ exactly these semantic roles:
173
+ background, ink, primary, secondary, accent, uncertainty. Return six valid #RRGGBB
174
+ hex colours. Do not choose a palette per figure; this one palette will be locked for the
175
+ whole survey.
176
+
177
+ The visual language should support controlled density, asymmetric but balanced layouts,
178
+ varied module scales, nested regions, symbolic icons, inset details, and distinct
179
+ connector styles. It should feel like an editorial scientific infographic rather than a
180
+ generic slide-deck flowchart. Keep the style coherent across figures without forcing
181
+ every figure into the same geometry.
182
+
183
+ Return exactly one JSON object in this schema:
184
+ {schema}
185
+
186
+ All prose values must be English."""
187
+
188
+
189
+ IMAGE_PROMPT = """Create a publication-ready conceptual scientific figure for an academic survey.
190
+
191
+ Figure type:
192
+ {figure_type}
193
+
194
+ Central message:
195
+ {main_message}
196
+
197
+ Scientific content that must be represented:
198
+ {relations}
199
+
200
+ Relationship rendering guidance:
201
+ {relation_guidance}
202
+
203
+ Entities or modules to include:
204
+ {entities}
205
+
206
+ Exact visible label inventory:
207
+ {exact_visible_labels}
208
+
209
+ Typography and layout protocol:
210
+ The inventory above is the only permitted reader-facing text. Copy each supplied label
211
+ character-for-character, including spelling, capitalization, hyphens, apostrophes, slashes,
212
+ underscores, and scientific symbols. Do not paraphrase, translate, abbreviate, pluralize,
213
+ correct, or merge labels. Do not render the surrounding JSON/list punctuation or quotation
214
+ marks. Do not render the full relation sentences, uncertainty sentences, evidence metadata,
215
+ Paper IDs, SH IDs, or any other prompt text. The entities/modules list is semantic guidance
216
+ only; render an entity name only when the exact same string appears in the inventory. If a
217
+ label cannot be rendered clearly, omit that label rather than inventing a replacement.
218
+
219
+ Use one short label per module, with a consistent readable sans-serif typeface, generous
220
+ letter spacing, strong contrast, and sufficient size for 100% PDF readability. Keep labels
221
+ inside their module boundaries with ample padding; never overlap labels, connectors, icons,
222
+ or panel borders. Do not create a legend, title, paragraph, axis, table, footnote, or caption
223
+ unless its exact text appears in the inventory.
224
+
225
+ Uncertainties or evidence boundaries to show:
226
+ {uncertainties}
227
+
228
+ Composition:
229
+ {composition}
230
+
231
+ Figure-type layout requirements:
232
+ {figure_type_layout}
233
+
234
+ Article-wide visual style:
235
+ {visual_language}
236
+
237
+ Locked article palette:
238
+ - Background: {background}
239
+ - Linework: {ink}
240
+ - Primary evidence-supported pathway: {primary}
241
+ - Secondary process or comparison group: {secondary}
242
+ - Key focal entity: {accent}
243
+ - Uncertainty or qualified relation: {uncertainty}
244
+
245
+ Visual language:
246
+ A visually rich editorial scientific infographic suitable for a high-impact
247
+ multidisciplinary research journal. Make it feel like a polished visual abstract or
248
+ systems-map poster, not a basic flowchart or presentation slide.
249
+
250
+ Create a clear focal hierarchy: one dominant visual anchor, two to four secondary
251
+ modules with different visual weights, and one restrained uncertainty or limitation
252
+ region. Build hierarchy through scale, position, layered panels, subtle tonal
253
+ backgrounds, symbolic icons, selective accent colour, and different connector weights.
254
+
255
+ Prefer an asymmetric but balanced composition. Combine grouped modules, inset details,
256
+ nested regions, branching or converging pathways, feedback loops, scale transitions, or
257
+ a compact semantic strip whenever supported by the supplied content. Use controlled
258
+ density: information-rich, visually layered, and detailed, while remaining readable at
259
+ 50% scale in a PDF.
260
+
261
+ Do not repeat identical rounded rectangles and do not use a default three-column layout.
262
+
263
+ Text constraints:
264
+ Render only the exact labels from the inventory, preferably as 1–5 word labels. Never add
265
+ decorative pseudo-text or plausible-looking terminology. Before finalizing, perform an
266
+ internal character-by-character check against the inventory; if any character is uncertain,
267
+ leave that label out. Keep all reader-facing text sparse and subordinate to the visual
268
+ structure. Leave clean visual space for the separate English caption and programmatic labels.
269
+
270
+ Scientific constraints:
271
+ This is a conceptual synthesis of the supplied survey content, not a new empirical result.
272
+ Do not invent quantitative data, experimental measurements, causal mechanisms, instruments,
273
+ model properties, or conclusions. Use solid prominent pathways only for directly supported
274
+ relationships. Use restrained secondary pathways for qualified contributions. Use muted,
275
+ dashed, or translucent elements for explicit uncertainty, evidence gaps, or background context.
276
+
277
+ Negative prompt:
278
+ No photorealistic laboratory scene, no stock-photo appearance, no science-fiction aesthetic,
279
+ no neon palette, no rainbow gradient, no illegible text, no fake chart, no invented numerical
280
+ data, no fictional equation, no paper citation, no journal logo, no misspelled words, no
281
+ invented labels, no text outside the exact label inventory, no fake legend, and no tiny or
282
+ overlapping text.
283
+
284
+ Layout requirements:
285
+ - Do not use a flat sequence of equal-width boxes.
286
+ - Do not use a default left-to-right three-column flowchart.
287
+ - Establish one dominant anchor near the visual center or upper center.
288
+ - Use an asymmetric but balanced arrangement.
289
+ - Combine at least three of the following when scientifically appropriate: grouped
290
+ modules, nested regions, inset detail, symbolic icons, branching pathways, converging
291
+ pathways, feedback loops, layered backgrounds, scale transitions, or a compact
292
+ semantic strip.
293
+ - Use solid primary-colour pathways for direct evidence-supported relations.
294
+ - Use thinner, dashed, or translucent pathways for qualified, indirect, contextual, or
295
+ uncertain relations.
296
+ - Use the accent colour sparingly for the key focal entity or conclusion.
297
+ - Reserve muted grey-blue tones for context and uncertainty.
298
+ - Keep the figure readable at 50% scale in a PDF.
299
+
300
+ Output: landscape 4:3, high resolution, balanced margins, suitable for PDF and Markdown.
301
+ """
302
+
303
+
304
+ VISION_QC_PROMPT = """Review this generated academic figure against the supplied figure brief.
305
+ The assessment is advisory: accept the image unless there is a clear factual, readability,
306
+ or style failure.
307
+
308
+ Figure brief:
309
+ {brief}
310
+
311
+ Locked article palette:
312
+ {palette}
313
+
314
+ Return exactly one JSON object with this schema:
315
+ {schema}
316
+
317
+ Reject only if the image has a major issue such as invented numerical data, fake readable
318
+ citations, an unsupported central relation, dense or garbled visible text, an obviously
319
+ incompatible palette, watermark/logo, or an unusable composition. Minor artistic variation
320
+ is acceptable. Do not reject merely because the image does not contain labels; labels are
321
+ added separately."""
322
+
323
+
324
+ def json_schema_text(schema: Mapping[str, Any]) -> str:
325
+ """Render schemas consistently without introducing markdown fences."""
326
+
327
+ return json.dumps(schema, ensure_ascii=False, sort_keys=True, indent=2)