qwen-sci 0.2.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- qwen_sci-0.2.2.dist-info/METADATA +492 -0
- qwen_sci-0.2.2.dist-info/RECORD +549 -0
- qwen_sci-0.2.2.dist-info/WHEEL +4 -0
- qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
- qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
- src/1.txt +1 -0
- src/__init__.py +1 -0
- src/__main__.py +5 -0
- src/agents/__init__.py +1 -0
- src/agents/experiment_design_agent/__init__.py +268 -0
- src/agents/experiment_design_agent/artifacts.py +747 -0
- src/agents/experiment_design_agent/cache.py +319 -0
- src/agents/experiment_design_agent/completeness.py +130 -0
- src/agents/experiment_design_agent/contracts.py +771 -0
- src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
- src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
- src/agents/experiment_design_agent/discipline_catalog.py +178 -0
- src/agents/experiment_design_agent/evidence_cards.py +338 -0
- src/agents/experiment_design_agent/evidence_planner.py +452 -0
- src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
- src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
- src/agents/experiment_design_agent/idea_adapter.py +100 -0
- src/agents/experiment_design_agent/idea_intake.py +87 -0
- src/agents/experiment_design_agent/llm_json.py +328 -0
- src/agents/experiment_design_agent/orchestrator.py +1220 -0
- src/agents/experiment_design_agent/reasoning_context.py +183 -0
- src/agents/experiment_design_agent/reasoning_validation.py +546 -0
- src/agents/experiment_design_agent/run.py +481 -0
- src/agents/experiment_design_agent/run_logging.py +292 -0
- src/agents/experiment_design_agent/scope_gate.py +198 -0
- src/agents/experiment_design_agent/study_type_composer.py +1360 -0
- src/agents/experiment_design_agent/survey_evidence.py +1381 -0
- src/agents/experiment_design_agent/template_router.py +195 -0
- src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
- src/agents/idea_agent/__init__.py +1 -0
- src/agents/idea_agent/agent/__init__.py +6 -0
- src/agents/idea_agent/agent/artifacts.py +308 -0
- src/agents/idea_agent/agent/base.py +122 -0
- src/agents/idea_agent/agent/ligagent.py +488 -0
- src/agents/idea_agent/agent/mcts.py +2060 -0
- src/agents/idea_agent/agent/prompts/__init__.py +48 -0
- src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
- src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
- src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
- src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
- src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
- src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
- src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
- src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
- src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
- src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
- src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
- src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
- src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
- src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
- src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
- src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
- src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
- src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
- src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
- src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
- src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
- src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
- src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
- src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
- src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
- src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
- src/agents/idea_agent/example/idea_result.json +900 -0
- src/agents/idea_agent/run.py +276 -0
- src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
- src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
- src/agents/idea_agent/tests/test_idea_debate.py +480 -0
- src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
- src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
- src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
- src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
- src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
- src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
- src/agents/idea_agent/tests/test_result_persistence.py +183 -0
- src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
- src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
- src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
- src/agents/idea_agent/utils/core/__init__.py +1 -0
- src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
- src/agents/idea_agent/utils/core/chat_errors.py +95 -0
- src/agents/idea_agent/utils/core/chat_router.py +130 -0
- src/agents/idea_agent/utils/core/chat_transport.py +188 -0
- src/agents/idea_agent/utils/core/config_loader.py +166 -0
- src/agents/idea_agent/utils/core/json_utils.py +28 -0
- src/agents/idea_agent/utils/core/logger.py +287 -0
- src/agents/idea_agent/utils/core/progress.py +58 -0
- src/agents/idea_agent/utils/core/response_parsing.py +57 -0
- src/agents/idea_agent/utils/core/run_inputs.py +198 -0
- src/agents/idea_agent/utils/mcts/__init__.py +1 -0
- src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
- src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
- src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
- src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
- src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
- src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
- src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
- src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
- src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
- src/agents/idea_agent/utils/papers/__init__.py +1 -0
- src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
- src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
- src/agents/idea_agent/utils/prompting/__init__.py +1 -0
- src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
- src/agents/idea_agent/utils/workflow/__init__.py +1 -0
- src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
- src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
- src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
- src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
- src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
- src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
- src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
- src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
- src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
- src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
- src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
- src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
- src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
- src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
- src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
- src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
- src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
- src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
- src/agents/research_plan_author/__init__.py +50 -0
- src/agents/research_plan_author/artifacts.py +270 -0
- src/agents/research_plan_author/authoring_blueprint.py +1246 -0
- src/agents/research_plan_author/bibtex_renderer.py +252 -0
- src/agents/research_plan_author/contract_repair.py +131 -0
- src/agents/research_plan_author/contracts.py +745 -0
- src/agents/research_plan_author/cross_section_editor.py +232 -0
- src/agents/research_plan_author/document_quality.py +987 -0
- src/agents/research_plan_author/idea_evolution.py +223 -0
- src/agents/research_plan_author/input_loader.py +76 -0
- src/agents/research_plan_author/latex_compiler.py +260 -0
- src/agents/research_plan_author/latex_safety.py +159 -0
- src/agents/research_plan_author/llm_json.py +74 -0
- src/agents/research_plan_author/markdown_renderer.py +275 -0
- src/agents/research_plan_author/pdf_validator.py +149 -0
- src/agents/research_plan_author/render.py +166 -0
- src/agents/research_plan_author/render_artifacts.py +187 -0
- src/agents/research_plan_author/run.py +765 -0
- src/agents/research_plan_author/run_logging.py +209 -0
- src/agents/research_plan_author/section_cache.py +184 -0
- src/agents/research_plan_author/section_composer.py +1764 -0
- src/agents/research_plan_author/section_router.py +209 -0
- src/agents/research_plan_author/semantic_validator.py +254 -0
- src/agents/research_plan_author/source_bundle.py +46 -0
- src/agents/research_plan_author/source_registry.py +208 -0
- src/agents/research_plan_author/survey_source_loader.py +137 -0
- src/agents/research_plan_author/template_adapter.py +173 -0
- src/agents/research_plan_author/template_profile.py +204 -0
- src/agents/research_plan_author/tex_renderer.py +496 -0
- src/agents/research_plan_author/theory_presentation.py +134 -0
- src/agents/research_plan_author/theory_spine.py +703 -0
- src/agents/survey_agent/Dockerfile +54 -0
- src/agents/survey_agent/README.md +350 -0
- src/agents/survey_agent/config/deep_survey.yaml +217 -0
- src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
- src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
- src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
- src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
- src/agents/survey_agent/env_report.md +348 -0
- src/agents/survey_agent/modules/__init__.py +0 -0
- src/agents/survey_agent/modules/code_collector.py +2194 -0
- src/agents/survey_agent/modules/code_report_generator.py +1282 -0
- src/agents/survey_agent/modules/data_manager.py +1713 -0
- src/agents/survey_agent/modules/database.py +167 -0
- src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
- src/agents/survey_agent/modules/fulltext_http.py +134 -0
- src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
- src/agents/survey_agent/modules/judge.py +434 -0
- src/agents/survey_agent/modules/outcome_RAG.py +236 -0
- src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
- src/agents/survey_agent/modules/pe.py +1729 -0
- src/agents/survey_agent/modules/pseudo_creator.py +782 -0
- src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
- src/agents/survey_agent/modules/refine_agent.py +1952 -0
- src/agents/survey_agent/modules/survey_generator.py +5691 -0
- src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
- src/agents/survey_agent/modules/visual_prompts.py +327 -0
- src/agents/survey_agent/modules/work_analyzer.py +2750 -0
- src/agents/survey_agent/modules/work_collector.py +5649 -0
- src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
- src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
- src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
- src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
- src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
- src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
- src/agents/survey_agent/utils/__init__.py +0 -0
- src/agents/survey_agent/utils/ablation_utils.py +317 -0
- src/agents/survey_agent/utils/api_call.py +2518 -0
- src/agents/survey_agent/utils/chat_utils.py +82 -0
- src/agents/survey_agent/utils/config_utils.py +70 -0
- src/agents/survey_agent/utils/convert_to_md.py +29 -0
- src/agents/survey_agent/utils/err_info.py +24 -0
- src/agents/survey_agent/utils/file_utils.py +176 -0
- src/agents/survey_agent/utils/gpu_utils.py +145 -0
- src/agents/survey_agent/utils/graph_visualizer.py +279 -0
- src/agents/survey_agent/utils/html_utils.py +181 -0
- src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
- src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
- src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
- src/agents/survey_agent/utils/mineru_utils.py +396 -0
- src/agents/survey_agent/utils/paper.py +144 -0
- src/agents/survey_agent/utils/read_yaml.py +15 -0
- src/agents/survey_agent/utils/repo_utils.py +167 -0
- src/agents/survey_agent/utils/rich_logger.py +77 -0
- src/agents/survey_agent/utils/step2v2.py +874 -0
- src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
- src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
- src/agents/survey_agent/utils/utils.py +118 -0
- src/agents/survey_agent/utils/work.py +2 -0
- src/cli.py +1611 -0
- src/config/__init__.py +213 -0
- src/config/default.yaml +1122 -0
- src/harness/LICENSE +21 -0
- src/harness/VENDORED.md +14 -0
- src/harness/src/__init__.py +0 -0
- src/harness/src/openharness/__init__.py +0 -0
- src/harness/src/openharness/__main__.py +6 -0
- src/harness/src/openharness/api/__init__.py +21 -0
- src/harness/src/openharness/api/client.py +281 -0
- src/harness/src/openharness/api/codex_client.py +407 -0
- src/harness/src/openharness/api/copilot_auth.py +240 -0
- src/harness/src/openharness/api/copilot_client.py +134 -0
- src/harness/src/openharness/api/errors.py +19 -0
- src/harness/src/openharness/api/openai_client.py +577 -0
- src/harness/src/openharness/api/provider.py +186 -0
- src/harness/src/openharness/api/registry.py +437 -0
- src/harness/src/openharness/api/usage.py +17 -0
- src/harness/src/openharness/auth/__init__.py +29 -0
- src/harness/src/openharness/auth/external.py +610 -0
- src/harness/src/openharness/auth/flows.py +189 -0
- src/harness/src/openharness/auth/manager.py +482 -0
- src/harness/src/openharness/auth/storage.py +269 -0
- src/harness/src/openharness/autopilot/__init__.py +23 -0
- src/harness/src/openharness/autopilot/service.py +2239 -0
- src/harness/src/openharness/autopilot/types.py +91 -0
- src/harness/src/openharness/bridge/__init__.py +20 -0
- src/harness/src/openharness/bridge/manager.py +106 -0
- src/harness/src/openharness/bridge/session_runner.py +46 -0
- src/harness/src/openharness/bridge/types.py +37 -0
- src/harness/src/openharness/bridge/work_secret.py +41 -0
- src/harness/src/openharness/channels/UPSTREAM +6 -0
- src/harness/src/openharness/channels/__init__.py +22 -0
- src/harness/src/openharness/channels/adapter.py +131 -0
- src/harness/src/openharness/channels/bus/__init__.py +6 -0
- src/harness/src/openharness/channels/bus/events.py +38 -0
- src/harness/src/openharness/channels/bus/queue.py +44 -0
- src/harness/src/openharness/channels/impl/__init__.py +6 -0
- src/harness/src/openharness/channels/impl/base.py +141 -0
- src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
- src/harness/src/openharness/channels/impl/discord.py +311 -0
- src/harness/src/openharness/channels/impl/email.py +410 -0
- src/harness/src/openharness/channels/impl/feishu.py +1342 -0
- src/harness/src/openharness/channels/impl/manager.py +257 -0
- src/harness/src/openharness/channels/impl/matrix.py +700 -0
- src/harness/src/openharness/channels/impl/mochat.py +897 -0
- src/harness/src/openharness/channels/impl/qq.py +141 -0
- src/harness/src/openharness/channels/impl/slack.py +284 -0
- src/harness/src/openharness/channels/impl/telegram.py +525 -0
- src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
- src/harness/src/openharness/cli.py +2551 -0
- src/harness/src/openharness/commands/__init__.py +21 -0
- src/harness/src/openharness/commands/registry.py +2783 -0
- src/harness/src/openharness/config/__init__.py +34 -0
- src/harness/src/openharness/config/paths.py +160 -0
- src/harness/src/openharness/config/schema.py +119 -0
- src/harness/src/openharness/config/settings.py +1104 -0
- src/harness/src/openharness/coordinator/__init__.py +12 -0
- src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
- src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
- src/harness/src/openharness/engine/__init__.py +80 -0
- src/harness/src/openharness/engine/cost_tracker.py +24 -0
- src/harness/src/openharness/engine/messages.py +222 -0
- src/harness/src/openharness/engine/query.py +1188 -0
- src/harness/src/openharness/engine/query_engine.py +313 -0
- src/harness/src/openharness/engine/stream_events.py +90 -0
- src/harness/src/openharness/hooks/__init__.py +50 -0
- src/harness/src/openharness/hooks/events.py +20 -0
- src/harness/src/openharness/hooks/executor.py +242 -0
- src/harness/src/openharness/hooks/hot_reload.py +31 -0
- src/harness/src/openharness/hooks/loader.py +68 -0
- src/harness/src/openharness/hooks/schemas.py +66 -0
- src/harness/src/openharness/hooks/types.py +38 -0
- src/harness/src/openharness/keybindings/__init__.py +14 -0
- src/harness/src/openharness/keybindings/default_bindings.py +11 -0
- src/harness/src/openharness/keybindings/loader.py +22 -0
- src/harness/src/openharness/keybindings/parser.py +18 -0
- src/harness/src/openharness/keybindings/resolver.py +13 -0
- src/harness/src/openharness/mcp/__init__.py +79 -0
- src/harness/src/openharness/mcp/client.py +298 -0
- src/harness/src/openharness/mcp/config.py +16 -0
- src/harness/src/openharness/mcp/types.py +76 -0
- src/harness/src/openharness/memory/__init__.py +25 -0
- src/harness/src/openharness/memory/agent.py +91 -0
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"""Legal open-access full-text candidate resolution.
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("url_for_pdf", "metadata.url_for_pdf", "pdf"),
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fields used by common scholarly APIs.
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for key in ("is_oa", "isOpenAccess", "open_access", "openAccess"):
|
|
100
|
+
value = paper.get(key)
|
|
101
|
+
if _is_truthy_oa_value(value):
|
|
102
|
+
return f"metadata.{key}"
|
|
103
|
+
if isinstance(value, Mapping):
|
|
104
|
+
if _is_truthy_oa_value(value.get("is_oa")) or _is_truthy_oa_value(
|
|
105
|
+
value.get("isOpenAccess")
|
|
106
|
+
):
|
|
107
|
+
return f"metadata.{key}.is_oa"
|
|
108
|
+
oa_status = str(value.get("oa_status") or value.get("status") or "").strip()
|
|
109
|
+
if oa_status.casefold() in {"gold", "green", "hybrid", "bronze", "open"}:
|
|
110
|
+
return f"metadata.{key}.oa_status"
|
|
111
|
+
return ""
|
|
112
|
+
|
|
113
|
+
|
|
114
|
+
def _generic_metadata_values(
|
|
115
|
+
paper: Mapping[str, Any],
|
|
116
|
+
) -> Iterable[tuple[str, str, str, str]]:
|
|
117
|
+
"""Yield standardized generic full-text fields from top-level metadata.
|
|
118
|
+
|
|
119
|
+
The pipeline deliberately does not scan arbitrary nested dictionaries for
|
|
120
|
+
strings resembling URLs. That would make an unrelated publisher URL look
|
|
121
|
+
like a declared full-text route. Only documented interchange field names
|
|
122
|
+
are accepted, first at the top level and then in ``fulltext``/``full_text``
|
|
123
|
+
containers used by external collectors.
|
|
124
|
+
"""
|
|
125
|
+
containers: list[tuple[str, Mapping[str, Any]]] = [("", paper)]
|
|
126
|
+
for container_name in ("fulltext", "full_text"):
|
|
127
|
+
container = paper.get(container_name)
|
|
128
|
+
if isinstance(container, Mapping):
|
|
129
|
+
containers.append((f"{container_name}.", container))
|
|
130
|
+
for prefix, container in containers:
|
|
131
|
+
for key, source, route_type in _GENERIC_METADATA_URL_FIELDS:
|
|
132
|
+
value = str(container.get(key) or "").strip()
|
|
133
|
+
if value:
|
|
134
|
+
# The field name is separately persisted so provenance can
|
|
135
|
+
# explain how this route entered the candidate queue.
|
|
136
|
+
yield f"{prefix}{key}", source, route_type, value
|
|
137
|
+
|
|
138
|
+
|
|
139
|
+
def _add_candidate(
|
|
140
|
+
candidates_by_url: dict[str, dict[str, Any]],
|
|
141
|
+
candidate: Mapping[str, Any],
|
|
142
|
+
) -> None:
|
|
143
|
+
normalized_url = normalize_http_url(candidate.get("url"))
|
|
144
|
+
if not normalized_url:
|
|
145
|
+
return
|
|
146
|
+
normalized = dict(candidate)
|
|
147
|
+
normalized["url"] = normalized_url
|
|
148
|
+
normalized["kind"] = "landing_page" if normalized.get("kind") == "landing_page" else "pdf"
|
|
149
|
+
# A DOI resolver URL is a metadata/redirect route, never the PDF bytes
|
|
150
|
+
# themselves. Treat a provider-mislabelled DOI URL as a bounded landing
|
|
151
|
+
# page so it is not requested with a PDF Range header.
|
|
152
|
+
parsed = urlsplit(normalized_url)
|
|
153
|
+
if normalized["kind"] == "pdf" and parsed.netloc.casefold() in {"doi.org", "dx.doi.org"}:
|
|
154
|
+
normalized["kind"] = "landing_page"
|
|
155
|
+
normalized["priority"] = int(normalized.get("priority") or 0)
|
|
156
|
+
normalized["source"] = str(normalized.get("source") or "unknown")
|
|
157
|
+
# `normalize_http_url()` lower-cases only scheme/host. Never lowercase the
|
|
158
|
+
# entire URL here: paths and signed query parameters may be case-sensitive.
|
|
159
|
+
key = normalized_url
|
|
160
|
+
existing = candidates_by_url.get(key)
|
|
161
|
+
if existing is None:
|
|
162
|
+
normalized["sources"] = [normalized["source"]]
|
|
163
|
+
candidates_by_url[key] = normalized
|
|
164
|
+
return
|
|
165
|
+
|
|
166
|
+
existing_sources = list(existing.get("sources") or [existing.get("source")])
|
|
167
|
+
if normalized["source"] not in existing_sources:
|
|
168
|
+
existing_sources.append(normalized["source"])
|
|
169
|
+
existing["sources"] = existing_sources
|
|
170
|
+
if (normalized["priority"], normalized["kind"] != "pdf") < (
|
|
171
|
+
int(existing.get("priority") or 0),
|
|
172
|
+
existing.get("kind") != "pdf",
|
|
173
|
+
):
|
|
174
|
+
existing.update(
|
|
175
|
+
{
|
|
176
|
+
key: value
|
|
177
|
+
for key, value in normalized.items()
|
|
178
|
+
if value not in (None, "", [], {})
|
|
179
|
+
}
|
|
180
|
+
)
|
|
181
|
+
existing["sources"] = existing_sources
|
|
182
|
+
|
|
183
|
+
|
|
184
|
+
def resolve_fulltext_candidates(
|
|
185
|
+
paper: Mapping[str, Any],
|
|
186
|
+
*,
|
|
187
|
+
unpaywall_api: Any,
|
|
188
|
+
include_all_unpaywall_locations: bool = True,
|
|
189
|
+
include_generic_metadata_urls: bool = True,
|
|
190
|
+
include_doi_landing_fallback: bool = True,
|
|
191
|
+
) -> dict[str, Any]:
|
|
192
|
+
"""Build ordered, legal OA candidates without fetching PDF bytes.
|
|
193
|
+
|
|
194
|
+
Candidate sources are alternative acquisition routes. They are not a
|
|
195
|
+
conjunctive relevance rule and a failed candidate must never change the
|
|
196
|
+
paper's project/SH semantic assessment.
|
|
197
|
+
"""
|
|
198
|
+
paper = paper if isinstance(paper, Mapping) else {}
|
|
199
|
+
doi = _paper_doi(paper, unpaywall_api)
|
|
200
|
+
candidates_by_url: dict[str, dict[str, Any]] = {}
|
|
201
|
+
disabled_candidates: list[dict[str, Any]] = []
|
|
202
|
+
unpaywall_status = "not_requested"
|
|
203
|
+
unpaywall_candidate_count = 0
|
|
204
|
+
|
|
205
|
+
if doi and unpaywall_api is not None:
|
|
206
|
+
try:
|
|
207
|
+
get_candidates = getattr(unpaywall_api, "get_oa_candidates", None)
|
|
208
|
+
if callable(get_candidates):
|
|
209
|
+
unpaywall_candidates = list(get_candidates(doi) or [])
|
|
210
|
+
else:
|
|
211
|
+
legacy_url = str(unpaywall_api.get_oa_pdf_url(doi) or "")
|
|
212
|
+
unpaywall_candidates = (
|
|
213
|
+
[
|
|
214
|
+
{
|
|
215
|
+
"url": legacy_url,
|
|
216
|
+
"kind": "pdf",
|
|
217
|
+
"source": "unpaywall.legacy_best_pdf",
|
|
218
|
+
"priority": OA_PRIORITY_UNPAYWALL_BEST,
|
|
219
|
+
}
|
|
220
|
+
]
|
|
221
|
+
if legacy_url
|
|
222
|
+
else []
|
|
223
|
+
)
|
|
224
|
+
unpaywall_status = "resolved" if unpaywall_candidates else "no_open_access_location"
|
|
225
|
+
unpaywall_candidate_count = sum(
|
|
226
|
+
1
|
|
227
|
+
for candidate in unpaywall_candidates
|
|
228
|
+
if str(candidate.get("source") or "").startswith("unpaywall.")
|
|
229
|
+
)
|
|
230
|
+
if not include_all_unpaywall_locations:
|
|
231
|
+
unpaywall_candidates = [
|
|
232
|
+
candidate
|
|
233
|
+
for candidate in unpaywall_candidates
|
|
234
|
+
if str(candidate.get("source") or "")
|
|
235
|
+
in {"unpaywall.best_oa_location", "unpaywall.legacy_best_pdf"}
|
|
236
|
+
]
|
|
237
|
+
for candidate in unpaywall_candidates:
|
|
238
|
+
if isinstance(candidate, Mapping):
|
|
239
|
+
_add_candidate(candidates_by_url, candidate)
|
|
240
|
+
except Exception as exc: # provider failures should not block other OA sources
|
|
241
|
+
unpaywall_status = "lookup_failed"
|
|
242
|
+
unpaywall_error = type(exc).__name__
|
|
243
|
+
else:
|
|
244
|
+
unpaywall_error = ""
|
|
245
|
+
else:
|
|
246
|
+
unpaywall_error = ""
|
|
247
|
+
|
|
248
|
+
openalex_locations = paper.get("openalex_oa_locations")
|
|
249
|
+
if isinstance(openalex_locations, Iterable) and not isinstance(
|
|
250
|
+
openalex_locations, (str, bytes, Mapping)
|
|
251
|
+
):
|
|
252
|
+
for location in openalex_locations:
|
|
253
|
+
if not isinstance(location, Mapping):
|
|
254
|
+
continue
|
|
255
|
+
source = str(location.get("source") or "openalex.oa_locations")
|
|
256
|
+
default_priority = (
|
|
257
|
+
OA_PRIORITY_OPENALEX_BEST
|
|
258
|
+
if source == "openalex.best_oa_location"
|
|
259
|
+
else OA_PRIORITY_OPENALEX_OTHER
|
|
260
|
+
)
|
|
261
|
+
try:
|
|
262
|
+
priority = int(location.get("priority", default_priority) or default_priority)
|
|
263
|
+
except (TypeError, ValueError):
|
|
264
|
+
priority = default_priority
|
|
265
|
+
common = {
|
|
266
|
+
"source": source,
|
|
267
|
+
"priority": priority,
|
|
268
|
+
"version": str(location.get("version") or ""),
|
|
269
|
+
"license": str(location.get("license") or ""),
|
|
270
|
+
"host_type": str(location.get("host_type") or ""),
|
|
271
|
+
"evidence": str(location.get("evidence") or "openalex.oa_location"),
|
|
272
|
+
"oa_evidence": "openalex.oa_location",
|
|
273
|
+
}
|
|
274
|
+
pdf_url = location.get("pdf_url") or location.get("url_for_pdf")
|
|
275
|
+
if pdf_url:
|
|
276
|
+
_add_candidate(
|
|
277
|
+
candidates_by_url,
|
|
278
|
+
{**common, "url": pdf_url, "kind": "pdf"},
|
|
279
|
+
)
|
|
280
|
+
landing_url = location.get("landing_page_url") or location.get("url")
|
|
281
|
+
if landing_url and str(landing_url).strip() != str(pdf_url or "").strip():
|
|
282
|
+
_add_candidate(
|
|
283
|
+
candidates_by_url,
|
|
284
|
+
{**common, "url": landing_url, "kind": "landing_page"},
|
|
285
|
+
)
|
|
286
|
+
|
|
287
|
+
external_ids = _external_ids(paper)
|
|
288
|
+
arxiv_id = str(external_ids.get("ArXiv") or external_ids.get("arXiv") or "").strip()
|
|
289
|
+
if arxiv_id:
|
|
290
|
+
_add_candidate(
|
|
291
|
+
candidates_by_url,
|
|
292
|
+
{
|
|
293
|
+
"url": f"https://arxiv.org/pdf/{arxiv_id}.pdf",
|
|
294
|
+
"kind": "pdf",
|
|
295
|
+
"source": "identifier.arxiv",
|
|
296
|
+
"priority": OA_PRIORITY_IDENTIFIER_REPOSITORY,
|
|
297
|
+
"version": "preprint",
|
|
298
|
+
},
|
|
299
|
+
)
|
|
300
|
+
_add_candidate(
|
|
301
|
+
candidates_by_url,
|
|
302
|
+
{
|
|
303
|
+
"url": f"https://export.arxiv.org/pdf/{arxiv_id}.pdf",
|
|
304
|
+
"kind": "pdf",
|
|
305
|
+
"source": "identifier.arxiv_mirror",
|
|
306
|
+
"priority": OA_PRIORITY_IDENTIFIER_REPOSITORY + 1,
|
|
307
|
+
"version": "preprint",
|
|
308
|
+
},
|
|
309
|
+
)
|
|
310
|
+
|
|
311
|
+
pmcid = str(
|
|
312
|
+
paper.get("pmcid")
|
|
313
|
+
or external_ids.get("PMCID")
|
|
314
|
+
or external_ids.get("pmcid")
|
|
315
|
+
or external_ids.get("PMC")
|
|
316
|
+
or ""
|
|
317
|
+
).strip()
|
|
318
|
+
if pmcid:
|
|
319
|
+
canonical_pmcid = pmcid.upper()
|
|
320
|
+
if not canonical_pmcid.startswith("PMC"):
|
|
321
|
+
canonical_pmcid = f"PMC{canonical_pmcid}"
|
|
322
|
+
_add_candidate(
|
|
323
|
+
candidates_by_url,
|
|
324
|
+
{
|
|
325
|
+
"url": f"https://pmc.ncbi.nlm.nih.gov/articles/{canonical_pmcid}/pdf/",
|
|
326
|
+
"kind": "pdf",
|
|
327
|
+
"source": "identifier.pmc",
|
|
328
|
+
"priority": OA_PRIORITY_IDENTIFIER_REPOSITORY,
|
|
329
|
+
"version": "open_access_repository",
|
|
330
|
+
},
|
|
331
|
+
)
|
|
332
|
+
|
|
333
|
+
for key, source in (
|
|
334
|
+
("repository_pdf", "metadata.repository"),
|
|
335
|
+
("repository_url", "metadata.repository"),
|
|
336
|
+
("accepted_manuscript_url", "metadata.accepted_manuscript"),
|
|
337
|
+
("author_manuscript_url", "metadata.author_manuscript"),
|
|
338
|
+
("open_repository_url", "metadata.open_repository"),
|
|
339
|
+
):
|
|
340
|
+
value = paper.get(key)
|
|
341
|
+
url = normalize_http_url(value)
|
|
342
|
+
if not url:
|
|
343
|
+
continue
|
|
344
|
+
_add_candidate(
|
|
345
|
+
candidates_by_url,
|
|
346
|
+
{
|
|
347
|
+
"url": url,
|
|
348
|
+
"kind": "pdf" if urlsplit(url).path.lower().endswith(".pdf") else "landing_page",
|
|
349
|
+
"source": source,
|
|
350
|
+
"priority": OA_PRIORITY_METADATA_REPOSITORY,
|
|
351
|
+
},
|
|
352
|
+
)
|
|
353
|
+
|
|
354
|
+
generic_metadata_oa_evidence = _explicit_oa_evidence(paper)
|
|
355
|
+
if include_generic_metadata_urls:
|
|
356
|
+
for field_name, source, route_type, raw_url in _generic_metadata_values(paper):
|
|
357
|
+
url = normalize_http_url(raw_url)
|
|
358
|
+
if not url:
|
|
359
|
+
continue
|
|
360
|
+
path_looks_like_pdf = urlsplit(url).path.lower().endswith(".pdf")
|
|
361
|
+
is_direct_pdf = route_type == "pdf" or (
|
|
362
|
+
route_type == "auto" and path_looks_like_pdf
|
|
363
|
+
)
|
|
364
|
+
if is_direct_pdf:
|
|
365
|
+
_add_candidate(
|
|
366
|
+
candidates_by_url,
|
|
367
|
+
{
|
|
368
|
+
"url": url,
|
|
369
|
+
"kind": "pdf",
|
|
370
|
+
"source": source,
|
|
371
|
+
"priority": OA_PRIORITY_GENERIC_METADATA,
|
|
372
|
+
"metadata_field": field_name,
|
|
373
|
+
"oa_evidence": generic_metadata_oa_evidence or "declared_pdf_url",
|
|
374
|
+
},
|
|
375
|
+
)
|
|
376
|
+
continue
|
|
377
|
+
if generic_metadata_oa_evidence:
|
|
378
|
+
_add_candidate(
|
|
379
|
+
candidates_by_url,
|
|
380
|
+
{
|
|
381
|
+
"url": url,
|
|
382
|
+
"kind": "landing_page",
|
|
383
|
+
"source": source,
|
|
384
|
+
"priority": OA_PRIORITY_GENERIC_METADATA + 1,
|
|
385
|
+
"metadata_field": field_name,
|
|
386
|
+
"oa_evidence": generic_metadata_oa_evidence,
|
|
387
|
+
},
|
|
388
|
+
)
|
|
389
|
+
continue
|
|
390
|
+
# Preserve the reason why a declared URL was not fetched. It is
|
|
391
|
+
# valuable provenance, and avoids quietly turning generic
|
|
392
|
+
# publisher metadata into an unrestricted landing-page crawler.
|
|
393
|
+
disabled_candidates.append(
|
|
394
|
+
{
|
|
395
|
+
"url": url,
|
|
396
|
+
"kind": "landing_page",
|
|
397
|
+
"source": source,
|
|
398
|
+
"priority": OA_PRIORITY_GENERIC_METADATA + 1,
|
|
399
|
+
"metadata_field": field_name,
|
|
400
|
+
"status": "landing_recovery_requires_explicit_oa",
|
|
401
|
+
}
|
|
402
|
+
)
|
|
403
|
+
|
|
404
|
+
open_access_pdf = paper.get("openAccessPdf")
|
|
405
|
+
if isinstance(open_access_pdf, Mapping):
|
|
406
|
+
_add_candidate(
|
|
407
|
+
candidates_by_url,
|
|
408
|
+
{
|
|
409
|
+
"url": open_access_pdf.get("url"),
|
|
410
|
+
"kind": "pdf",
|
|
411
|
+
"source": "provider.open_access_pdf",
|
|
412
|
+
"priority": OA_PRIORITY_PROVIDER_URL,
|
|
413
|
+
},
|
|
414
|
+
)
|
|
415
|
+
|
|
416
|
+
# A DOI resolver is a bounded public metadata lookup, not a method for
|
|
417
|
+
# probing subscription routes. It is scheduled immediately after the
|
|
418
|
+
# Unpaywall routes, then before generic/provider metadata alternatives.
|
|
419
|
+
# It is activated only with a concrete OA declaration: either Unpaywall
|
|
420
|
+
# returned an OA location or incoming metadata explicitly said the work is
|
|
421
|
+
# OA.
|
|
422
|
+
doi_oa_evidence = (
|
|
423
|
+
"unpaywall.oa_location"
|
|
424
|
+
if unpaywall_status == "resolved"
|
|
425
|
+
else generic_metadata_oa_evidence
|
|
426
|
+
)
|
|
427
|
+
if doi and include_doi_landing_fallback and doi_oa_evidence:
|
|
428
|
+
_add_candidate(
|
|
429
|
+
candidates_by_url,
|
|
430
|
+
{
|
|
431
|
+
"url": f"https://doi.org/{quote(doi, safe='/')}",
|
|
432
|
+
"kind": "landing_page",
|
|
433
|
+
"source": "doi.landing_fallback",
|
|
434
|
+
"priority": OA_PRIORITY_DOI_LANDING,
|
|
435
|
+
"doi": doi,
|
|
436
|
+
"oa_evidence": doi_oa_evidence,
|
|
437
|
+
},
|
|
438
|
+
)
|
|
439
|
+
candidates = sorted(
|
|
440
|
+
candidates_by_url.values(),
|
|
441
|
+
key=lambda candidate: (
|
|
442
|
+
int(candidate.get("priority") or 0),
|
|
443
|
+
0 if candidate.get("kind") == "pdf" else 1,
|
|
444
|
+
str(candidate.get("url") or ""),
|
|
445
|
+
),
|
|
446
|
+
)
|
|
447
|
+
return {
|
|
448
|
+
"schema_version": "fulltext_resolution_v2",
|
|
449
|
+
"paper_id": str(paper.get("paperId") or paper.get("paper_id") or ""),
|
|
450
|
+
"doi": doi,
|
|
451
|
+
"candidates": candidates,
|
|
452
|
+
"deferred_candidates": [],
|
|
453
|
+
"disabled_candidates": disabled_candidates,
|
|
454
|
+
"unpaywall": {
|
|
455
|
+
"status": unpaywall_status,
|
|
456
|
+
"candidate_count": unpaywall_candidate_count,
|
|
457
|
+
**({"error": unpaywall_error} if unpaywall_error else {}),
|
|
458
|
+
},
|
|
459
|
+
}
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
class _DeclaredPdfLinkParser(HTMLParser):
|
|
463
|
+
"""Extract bounded, article-shaped PDF links from an already approved OA page."""
|
|
464
|
+
|
|
465
|
+
def __init__(self) -> None:
|
|
466
|
+
super().__init__(convert_charrefs=True)
|
|
467
|
+
self.pdf_links: list[str] = []
|
|
468
|
+
|
|
469
|
+
def handle_starttag(self, tag: str, attrs: Iterable[tuple[str, str | None]]) -> None:
|
|
470
|
+
attributes = {str(key).lower(): str(value or "") for key, value in attrs}
|
|
471
|
+
tag = tag.lower()
|
|
472
|
+
if tag == "meta":
|
|
473
|
+
meta_name = (
|
|
474
|
+
attributes.get("name", "")
|
|
475
|
+
or attributes.get("property", "")
|
|
476
|
+
or attributes.get("itemprop", "")
|
|
477
|
+
).lower()
|
|
478
|
+
if meta_name in {
|
|
479
|
+
"citation_pdf_url",
|
|
480
|
+
"eprints.document_url",
|
|
481
|
+
"bepress_citation_pdf_url",
|
|
482
|
+
}:
|
|
483
|
+
self.pdf_links.append(attributes.get("content", ""))
|
|
484
|
+
return
|
|
485
|
+
if tag == "link" and "application/pdf" in attributes.get("type", "").lower():
|
|
486
|
+
self.pdf_links.append(attributes.get("href", ""))
|
|
487
|
+
return
|
|
488
|
+
if tag == "a":
|
|
489
|
+
href = attributes.get("href", "")
|
|
490
|
+
parsed = urlsplit(href)
|
|
491
|
+
# Repository pages often expose a generic PDF anchor. A
|
|
492
|
+
# supplementary PDF, however, is not a substitute for the article.
|
|
493
|
+
# Keep the fallback conservative and never promote it to full text.
|
|
494
|
+
link_context = " ".join(
|
|
495
|
+
(
|
|
496
|
+
href,
|
|
497
|
+
attributes.get("title", ""),
|
|
498
|
+
attributes.get("aria-label", ""),
|
|
499
|
+
attributes.get("class", ""),
|
|
500
|
+
)
|
|
501
|
+
).lower()
|
|
502
|
+
is_supplement = any(
|
|
503
|
+
marker in link_context
|
|
504
|
+
for marker in ("supplement", "supporting-information", "supporting_information")
|
|
505
|
+
)
|
|
506
|
+
is_pdf_path = parsed.path.lower().endswith(".pdf")
|
|
507
|
+
is_pdf_type = "application/pdf" in attributes.get("type", "").lower()
|
|
508
|
+
is_article_download = (
|
|
509
|
+
"download" in attributes
|
|
510
|
+
and any(marker in link_context for marker in ("pdf", "manuscript", "fulltext", "full-text"))
|
|
511
|
+
)
|
|
512
|
+
if not is_supplement and (is_pdf_path or is_pdf_type or is_article_download):
|
|
513
|
+
self.pdf_links.append(href)
|
|
514
|
+
|
|
515
|
+
|
|
516
|
+
def _landing_recovery_permitted(candidate: Mapping[str, Any]) -> bool:
|
|
517
|
+
"""Allow recovery only from explicit, lawful OA/repository routes."""
|
|
518
|
+
|
|
519
|
+
if str(candidate.get("kind") or "") != "landing_page":
|
|
520
|
+
return False
|
|
521
|
+
source = str(candidate.get("source") or "").casefold()
|
|
522
|
+
# DOI resolution is deliberately more restrictive than a landing page
|
|
523
|
+
# already supplied by Unpaywall: the caller must have retained a concrete
|
|
524
|
+
# OA declaration in the candidate provenance.
|
|
525
|
+
if source == "doi.landing_fallback":
|
|
526
|
+
return bool(str(candidate.get("oa_evidence") or "").strip())
|
|
527
|
+
if source.startswith(("metadata.full_text", "metadata.fulltext", "metadata.landing_page", "metadata.url_for_landing_page")):
|
|
528
|
+
return bool(str(candidate.get("oa_evidence") or "").strip())
|
|
529
|
+
allowed_prefixes = (
|
|
530
|
+
"unpaywall.",
|
|
531
|
+
"identifier.arxiv",
|
|
532
|
+
"identifier.pmc",
|
|
533
|
+
"metadata.repository",
|
|
534
|
+
"metadata.accepted_manuscript",
|
|
535
|
+
"metadata.author_manuscript",
|
|
536
|
+
"metadata.open_repository",
|
|
537
|
+
# OpenAlex has explicitly marked this URL as an OA full-text route.
|
|
538
|
+
"provider.open_access_pdf",
|
|
539
|
+
"openalex.",
|
|
540
|
+
)
|
|
541
|
+
return source.startswith(allowed_prefixes)
|
|
542
|
+
|
|
543
|
+
|
|
544
|
+
def _bounded_landing_get(
|
|
545
|
+
url: str,
|
|
546
|
+
*,
|
|
547
|
+
headers: Mapping[str, str],
|
|
548
|
+
timeout_seconds: float,
|
|
549
|
+
max_redirects: int,
|
|
550
|
+
http_client: Any = None,
|
|
551
|
+
) -> tuple[Any | None, dict[str, Any]]:
|
|
552
|
+
"""GET a public landing page with an explicit, small redirect budget.
|
|
553
|
+
|
|
554
|
+
Requests' default redirect policy is intentionally not used here. A DOI
|
|
555
|
+
can redirect through several providers; constraining hops keeps a fallback
|
|
556
|
+
from becoming an unbounded route explorer and records the actual terminal
|
|
557
|
+
URL for provenance.
|
|
558
|
+
"""
|
|
559
|
+
current_url = url
|
|
560
|
+
redirects = 0
|
|
561
|
+
while True:
|
|
562
|
+
try:
|
|
563
|
+
request_get = http_client.get if http_client is not None else requests.get
|
|
564
|
+
response = request_get(
|
|
565
|
+
current_url,
|
|
566
|
+
headers=dict(headers),
|
|
567
|
+
stream=True,
|
|
568
|
+
timeout=max(1.0, min(float(timeout_seconds), 30.0)),
|
|
569
|
+
allow_redirects=False,
|
|
570
|
+
)
|
|
571
|
+
except requests.Timeout as exc:
|
|
572
|
+
return None, {
|
|
573
|
+
"status": "timeout",
|
|
574
|
+
"http_status": None,
|
|
575
|
+
"final_url": current_url,
|
|
576
|
+
"error": str(exc)[:300],
|
|
577
|
+
"redirect_count": redirects,
|
|
578
|
+
}
|
|
579
|
+
except requests.RequestException as exc:
|
|
580
|
+
return None, {
|
|
581
|
+
"status": "network_error",
|
|
582
|
+
"http_status": None,
|
|
583
|
+
"final_url": current_url,
|
|
584
|
+
"error": str(exc)[:300],
|
|
585
|
+
"redirect_count": redirects,
|
|
586
|
+
}
|
|
587
|
+
|
|
588
|
+
status_code = int(getattr(response, "status_code", 0) or 0)
|
|
589
|
+
if status_code not in {301, 302, 303, 307, 308}:
|
|
590
|
+
return response, {
|
|
591
|
+
"status": "response",
|
|
592
|
+
"http_status": status_code,
|
|
593
|
+
"final_url": normalize_http_url(getattr(response, "url", "") or current_url),
|
|
594
|
+
"redirect_count": redirects,
|
|
595
|
+
}
|
|
596
|
+
|
|
597
|
+
location = str(getattr(response, "headers", {}).get("Location") or "").strip()
|
|
598
|
+
next_url = normalize_http_url(urljoin(current_url, location)) if location else ""
|
|
599
|
+
response.close()
|
|
600
|
+
if not next_url:
|
|
601
|
+
return None, {
|
|
602
|
+
"status": "redirect_without_location",
|
|
603
|
+
"http_status": status_code,
|
|
604
|
+
"final_url": current_url,
|
|
605
|
+
"redirect_count": redirects,
|
|
606
|
+
}
|
|
607
|
+
if redirects >= max(0, int(max_redirects)):
|
|
608
|
+
return None, {
|
|
609
|
+
"status": "redirect_limit_exceeded",
|
|
610
|
+
"http_status": status_code,
|
|
611
|
+
"final_url": current_url,
|
|
612
|
+
"redirect_count": redirects,
|
|
613
|
+
}
|
|
614
|
+
current_url = next_url
|
|
615
|
+
redirects += 1
|
|
616
|
+
|
|
617
|
+
|
|
618
|
+
def resolve_declared_pdf_links(
|
|
619
|
+
candidate: Mapping[str, Any],
|
|
620
|
+
*,
|
|
621
|
+
timeout_seconds: float = 12.0,
|
|
622
|
+
max_html_bytes: int = 1_500_000,
|
|
623
|
+
max_pdf_links: int = 8,
|
|
624
|
+
max_redirects: int = 3,
|
|
625
|
+
http_client: Any = None,
|
|
626
|
+
) -> dict[str, Any]:
|
|
627
|
+
"""Resolve one declared OA/repository landing page to bounded PDF links."""
|
|
628
|
+
if not _landing_recovery_permitted(candidate):
|
|
629
|
+
return {"status": "landing_recovery_not_permitted", "pdf_candidates": []}
|
|
630
|
+
url = normalize_http_url(candidate.get("url"))
|
|
631
|
+
if not url:
|
|
632
|
+
return {"status": "invalid_url", "pdf_candidates": []}
|
|
633
|
+
headers = {
|
|
634
|
+
"Accept": "text/html,application/xhtml+xml,application/pdf;q=0.8,*/*;q=0.2",
|
|
635
|
+
}
|
|
636
|
+
if http_client is None:
|
|
637
|
+
headers["User-Agent"] = "Xcientist/0.8 (academic OA full-text resolver)"
|
|
638
|
+
started_at = time.monotonic()
|
|
639
|
+
response, request_result = _bounded_landing_get(
|
|
640
|
+
url,
|
|
641
|
+
headers=headers,
|
|
642
|
+
timeout_seconds=timeout_seconds,
|
|
643
|
+
max_redirects=max_redirects,
|
|
644
|
+
http_client=http_client,
|
|
645
|
+
)
|
|
646
|
+
if response is None:
|
|
647
|
+
return {
|
|
648
|
+
**request_result,
|
|
649
|
+
"elapsed_seconds": round(time.monotonic() - started_at, 3),
|
|
650
|
+
"pdf_candidates": [],
|
|
651
|
+
}
|
|
652
|
+
|
|
653
|
+
final_url = str(request_result.get("final_url") or url)
|
|
654
|
+
status_code = int(request_result.get("http_status") or 0)
|
|
655
|
+
content_type = str(getattr(response, "headers", {}).get("Content-Type") or "").lower()
|
|
656
|
+
elapsed_seconds = round(time.monotonic() - started_at, 3)
|
|
657
|
+
if status_code == 404:
|
|
658
|
+
response.close()
|
|
659
|
+
return {
|
|
660
|
+
"status": "not_found",
|
|
661
|
+
"http_status": status_code,
|
|
662
|
+
"final_url": final_url,
|
|
663
|
+
"content_type": content_type,
|
|
664
|
+
"elapsed_seconds": elapsed_seconds,
|
|
665
|
+
"redirect_count": request_result.get("redirect_count", 0),
|
|
666
|
+
"pdf_candidates": [],
|
|
667
|
+
}
|
|
668
|
+
if status_code in {401, 403}:
|
|
669
|
+
response.close()
|
|
670
|
+
return {
|
|
671
|
+
"status": "access_denied",
|
|
672
|
+
"http_status": status_code,
|
|
673
|
+
"final_url": final_url,
|
|
674
|
+
"content_type": content_type,
|
|
675
|
+
"elapsed_seconds": elapsed_seconds,
|
|
676
|
+
"redirect_count": request_result.get("redirect_count", 0),
|
|
677
|
+
"pdf_candidates": [],
|
|
678
|
+
}
|
|
679
|
+
if status_code < 200 or status_code >= 300:
|
|
680
|
+
response.close()
|
|
681
|
+
return {
|
|
682
|
+
"status": "http_error",
|
|
683
|
+
"http_status": status_code,
|
|
684
|
+
"final_url": final_url,
|
|
685
|
+
"content_type": content_type,
|
|
686
|
+
"elapsed_seconds": elapsed_seconds,
|
|
687
|
+
"redirect_count": request_result.get("redirect_count", 0),
|
|
688
|
+
"pdf_candidates": [],
|
|
689
|
+
}
|
|
690
|
+
|
|
691
|
+
data = bytearray()
|
|
692
|
+
try:
|
|
693
|
+
for chunk in response.iter_content(chunk_size=64 * 1024):
|
|
694
|
+
if not chunk:
|
|
695
|
+
continue
|
|
696
|
+
data.extend(chunk)
|
|
697
|
+
if len(data) > max_html_bytes:
|
|
698
|
+
return {
|
|
699
|
+
"status": "landing_page_too_large",
|
|
700
|
+
"http_status": status_code,
|
|
701
|
+
"final_url": final_url,
|
|
702
|
+
"content_type": content_type,
|
|
703
|
+
"elapsed_seconds": elapsed_seconds,
|
|
704
|
+
"redirect_count": request_result.get("redirect_count", 0),
|
|
705
|
+
"pdf_candidates": [],
|
|
706
|
+
}
|
|
707
|
+
finally:
|
|
708
|
+
response.close()
|
|
709
|
+
|
|
710
|
+
raw = bytes(data)
|
|
711
|
+
if "application/pdf" in content_type or raw.lstrip().startswith(b"%PDF-"):
|
|
712
|
+
pdf_urls = [final_url]
|
|
713
|
+
status = "resolved_to_pdf"
|
|
714
|
+
else:
|
|
715
|
+
parser = _DeclaredPdfLinkParser()
|
|
716
|
+
parser.feed(raw.decode("utf-8", errors="replace"))
|
|
717
|
+
pdf_urls = []
|
|
718
|
+
seen: set[str] = set()
|
|
719
|
+
for href in parser.pdf_links:
|
|
720
|
+
resolved = normalize_http_url(urljoin(final_url, href))
|
|
721
|
+
if resolved and resolved not in seen:
|
|
722
|
+
seen.add(resolved)
|
|
723
|
+
pdf_urls.append(resolved)
|
|
724
|
+
if len(pdf_urls) >= max_pdf_links:
|
|
725
|
+
break
|
|
726
|
+
status = "pdf_links_found" if pdf_urls else "no_declared_pdf"
|
|
727
|
+
|
|
728
|
+
parent_source = str(candidate.get("source") or "landing_page")
|
|
729
|
+
priority = int(candidate.get("priority") or 0)
|
|
730
|
+
return {
|
|
731
|
+
"status": status,
|
|
732
|
+
"http_status": status_code,
|
|
733
|
+
"final_url": final_url,
|
|
734
|
+
"content_type": content_type,
|
|
735
|
+
"elapsed_seconds": elapsed_seconds,
|
|
736
|
+
"redirect_count": request_result.get("redirect_count", 0),
|
|
737
|
+
"pdf_candidates": [
|
|
738
|
+
{
|
|
739
|
+
"url": pdf_url,
|
|
740
|
+
"kind": "pdf",
|
|
741
|
+
"source": f"{parent_source}.declared_pdf",
|
|
742
|
+
"priority": priority,
|
|
743
|
+
"version": candidate.get("version", ""),
|
|
744
|
+
"license": candidate.get("license", ""),
|
|
745
|
+
"host_type": candidate.get("host_type", ""),
|
|
746
|
+
}
|
|
747
|
+
for pdf_url in pdf_urls
|
|
748
|
+
],
|
|
749
|
+
}
|