qwen-sci 0.2.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- qwen_sci-0.2.2.dist-info/METADATA +492 -0
- qwen_sci-0.2.2.dist-info/RECORD +549 -0
- qwen_sci-0.2.2.dist-info/WHEEL +4 -0
- qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
- qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
- src/1.txt +1 -0
- src/__init__.py +1 -0
- src/__main__.py +5 -0
- src/agents/__init__.py +1 -0
- src/agents/experiment_design_agent/__init__.py +268 -0
- src/agents/experiment_design_agent/artifacts.py +747 -0
- src/agents/experiment_design_agent/cache.py +319 -0
- src/agents/experiment_design_agent/completeness.py +130 -0
- src/agents/experiment_design_agent/contracts.py +771 -0
- src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
- src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
- src/agents/experiment_design_agent/discipline_catalog.py +178 -0
- src/agents/experiment_design_agent/evidence_cards.py +338 -0
- src/agents/experiment_design_agent/evidence_planner.py +452 -0
- src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
- src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
- src/agents/experiment_design_agent/idea_adapter.py +100 -0
- src/agents/experiment_design_agent/idea_intake.py +87 -0
- src/agents/experiment_design_agent/llm_json.py +328 -0
- src/agents/experiment_design_agent/orchestrator.py +1220 -0
- src/agents/experiment_design_agent/reasoning_context.py +183 -0
- src/agents/experiment_design_agent/reasoning_validation.py +546 -0
- src/agents/experiment_design_agent/run.py +481 -0
- src/agents/experiment_design_agent/run_logging.py +292 -0
- src/agents/experiment_design_agent/scope_gate.py +198 -0
- src/agents/experiment_design_agent/study_type_composer.py +1360 -0
- src/agents/experiment_design_agent/survey_evidence.py +1381 -0
- src/agents/experiment_design_agent/template_router.py +195 -0
- src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
- src/agents/idea_agent/__init__.py +1 -0
- src/agents/idea_agent/agent/__init__.py +6 -0
- src/agents/idea_agent/agent/artifacts.py +308 -0
- src/agents/idea_agent/agent/base.py +122 -0
- src/agents/idea_agent/agent/ligagent.py +488 -0
- src/agents/idea_agent/agent/mcts.py +2060 -0
- src/agents/idea_agent/agent/prompts/__init__.py +48 -0
- src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
- src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
- src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
- src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
- src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
- src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
- src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
- src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
- src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
- src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
- src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
- src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
- src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
- src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
- src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
- src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
- src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
- src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
- src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
- src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
- src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
- src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
- src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
- src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
- src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
- src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
- src/agents/idea_agent/example/idea_result.json +900 -0
- src/agents/idea_agent/run.py +276 -0
- src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
- src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
- src/agents/idea_agent/tests/test_idea_debate.py +480 -0
- src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
- src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
- src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
- src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
- src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
- src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
- src/agents/idea_agent/tests/test_result_persistence.py +183 -0
- src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
- src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
- src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
- src/agents/idea_agent/utils/core/__init__.py +1 -0
- src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
- src/agents/idea_agent/utils/core/chat_errors.py +95 -0
- src/agents/idea_agent/utils/core/chat_router.py +130 -0
- src/agents/idea_agent/utils/core/chat_transport.py +188 -0
- src/agents/idea_agent/utils/core/config_loader.py +166 -0
- src/agents/idea_agent/utils/core/json_utils.py +28 -0
- src/agents/idea_agent/utils/core/logger.py +287 -0
- src/agents/idea_agent/utils/core/progress.py +58 -0
- src/agents/idea_agent/utils/core/response_parsing.py +57 -0
- src/agents/idea_agent/utils/core/run_inputs.py +198 -0
- src/agents/idea_agent/utils/mcts/__init__.py +1 -0
- src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
- src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
- src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
- src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
- src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
- src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
- src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
- src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
- src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
- src/agents/idea_agent/utils/papers/__init__.py +1 -0
- src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
- src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
- src/agents/idea_agent/utils/prompting/__init__.py +1 -0
- src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
- src/agents/idea_agent/utils/workflow/__init__.py +1 -0
- src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
- src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
- src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
- src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
- src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
- src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
- src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
- src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
- src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
- src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
- src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
- src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
- src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
- src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
- src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
- src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
- src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
- src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
- src/agents/research_plan_author/__init__.py +50 -0
- src/agents/research_plan_author/artifacts.py +270 -0
- src/agents/research_plan_author/authoring_blueprint.py +1246 -0
- src/agents/research_plan_author/bibtex_renderer.py +252 -0
- src/agents/research_plan_author/contract_repair.py +131 -0
- src/agents/research_plan_author/contracts.py +745 -0
- src/agents/research_plan_author/cross_section_editor.py +232 -0
- src/agents/research_plan_author/document_quality.py +987 -0
- src/agents/research_plan_author/idea_evolution.py +223 -0
- src/agents/research_plan_author/input_loader.py +76 -0
- src/agents/research_plan_author/latex_compiler.py +260 -0
- src/agents/research_plan_author/latex_safety.py +159 -0
- src/agents/research_plan_author/llm_json.py +74 -0
- src/agents/research_plan_author/markdown_renderer.py +275 -0
- src/agents/research_plan_author/pdf_validator.py +149 -0
- src/agents/research_plan_author/render.py +166 -0
- src/agents/research_plan_author/render_artifacts.py +187 -0
- src/agents/research_plan_author/run.py +765 -0
- src/agents/research_plan_author/run_logging.py +209 -0
- src/agents/research_plan_author/section_cache.py +184 -0
- src/agents/research_plan_author/section_composer.py +1764 -0
- src/agents/research_plan_author/section_router.py +209 -0
- src/agents/research_plan_author/semantic_validator.py +254 -0
- src/agents/research_plan_author/source_bundle.py +46 -0
- src/agents/research_plan_author/source_registry.py +208 -0
- src/agents/research_plan_author/survey_source_loader.py +137 -0
- src/agents/research_plan_author/template_adapter.py +173 -0
- src/agents/research_plan_author/template_profile.py +204 -0
- src/agents/research_plan_author/tex_renderer.py +496 -0
- src/agents/research_plan_author/theory_presentation.py +134 -0
- src/agents/research_plan_author/theory_spine.py +703 -0
- src/agents/survey_agent/Dockerfile +54 -0
- src/agents/survey_agent/README.md +350 -0
- src/agents/survey_agent/config/deep_survey.yaml +217 -0
- src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
- src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
- src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
- src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
- src/agents/survey_agent/env_report.md +348 -0
- src/agents/survey_agent/modules/__init__.py +0 -0
- src/agents/survey_agent/modules/code_collector.py +2194 -0
- src/agents/survey_agent/modules/code_report_generator.py +1282 -0
- src/agents/survey_agent/modules/data_manager.py +1713 -0
- src/agents/survey_agent/modules/database.py +167 -0
- src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
- src/agents/survey_agent/modules/fulltext_http.py +134 -0
- src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
- src/agents/survey_agent/modules/judge.py +434 -0
- src/agents/survey_agent/modules/outcome_RAG.py +236 -0
- src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
- src/agents/survey_agent/modules/pe.py +1729 -0
- src/agents/survey_agent/modules/pseudo_creator.py +782 -0
- src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
- src/agents/survey_agent/modules/refine_agent.py +1952 -0
- src/agents/survey_agent/modules/survey_generator.py +5691 -0
- src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
- src/agents/survey_agent/modules/visual_prompts.py +327 -0
- src/agents/survey_agent/modules/work_analyzer.py +2750 -0
- src/agents/survey_agent/modules/work_collector.py +5649 -0
- src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
- src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
- src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
- src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
- src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
- src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
- src/agents/survey_agent/utils/__init__.py +0 -0
- src/agents/survey_agent/utils/ablation_utils.py +317 -0
- src/agents/survey_agent/utils/api_call.py +2518 -0
- src/agents/survey_agent/utils/chat_utils.py +82 -0
- src/agents/survey_agent/utils/config_utils.py +70 -0
- src/agents/survey_agent/utils/convert_to_md.py +29 -0
- src/agents/survey_agent/utils/err_info.py +24 -0
- src/agents/survey_agent/utils/file_utils.py +176 -0
- src/agents/survey_agent/utils/gpu_utils.py +145 -0
- src/agents/survey_agent/utils/graph_visualizer.py +279 -0
- src/agents/survey_agent/utils/html_utils.py +181 -0
- src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
- src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
- src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
- src/agents/survey_agent/utils/mineru_utils.py +396 -0
- src/agents/survey_agent/utils/paper.py +144 -0
- src/agents/survey_agent/utils/read_yaml.py +15 -0
- src/agents/survey_agent/utils/repo_utils.py +167 -0
- src/agents/survey_agent/utils/rich_logger.py +77 -0
- src/agents/survey_agent/utils/step2v2.py +874 -0
- src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
- src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
- src/agents/survey_agent/utils/utils.py +118 -0
- src/agents/survey_agent/utils/work.py +2 -0
- src/cli.py +1611 -0
- src/config/__init__.py +213 -0
- src/config/default.yaml +1122 -0
- src/harness/LICENSE +21 -0
- src/harness/VENDORED.md +14 -0
- src/harness/src/__init__.py +0 -0
- src/harness/src/openharness/__init__.py +0 -0
- src/harness/src/openharness/__main__.py +6 -0
- src/harness/src/openharness/api/__init__.py +21 -0
- src/harness/src/openharness/api/client.py +281 -0
- src/harness/src/openharness/api/codex_client.py +407 -0
- src/harness/src/openharness/api/copilot_auth.py +240 -0
- src/harness/src/openharness/api/copilot_client.py +134 -0
- src/harness/src/openharness/api/errors.py +19 -0
- src/harness/src/openharness/api/openai_client.py +577 -0
- src/harness/src/openharness/api/provider.py +186 -0
- src/harness/src/openharness/api/registry.py +437 -0
- src/harness/src/openharness/api/usage.py +17 -0
- src/harness/src/openharness/auth/__init__.py +29 -0
- src/harness/src/openharness/auth/external.py +610 -0
- src/harness/src/openharness/auth/flows.py +189 -0
- src/harness/src/openharness/auth/manager.py +482 -0
- src/harness/src/openharness/auth/storage.py +269 -0
- src/harness/src/openharness/autopilot/__init__.py +23 -0
- src/harness/src/openharness/autopilot/service.py +2239 -0
- src/harness/src/openharness/autopilot/types.py +91 -0
- src/harness/src/openharness/bridge/__init__.py +20 -0
- src/harness/src/openharness/bridge/manager.py +106 -0
- src/harness/src/openharness/bridge/session_runner.py +46 -0
- src/harness/src/openharness/bridge/types.py +37 -0
- src/harness/src/openharness/bridge/work_secret.py +41 -0
- src/harness/src/openharness/channels/UPSTREAM +6 -0
- src/harness/src/openharness/channels/__init__.py +22 -0
- src/harness/src/openharness/channels/adapter.py +131 -0
- src/harness/src/openharness/channels/bus/__init__.py +6 -0
- src/harness/src/openharness/channels/bus/events.py +38 -0
- src/harness/src/openharness/channels/bus/queue.py +44 -0
- src/harness/src/openharness/channels/impl/__init__.py +6 -0
- src/harness/src/openharness/channels/impl/base.py +141 -0
- src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
- src/harness/src/openharness/channels/impl/discord.py +311 -0
- src/harness/src/openharness/channels/impl/email.py +410 -0
- src/harness/src/openharness/channels/impl/feishu.py +1342 -0
- src/harness/src/openharness/channels/impl/manager.py +257 -0
- src/harness/src/openharness/channels/impl/matrix.py +700 -0
- src/harness/src/openharness/channels/impl/mochat.py +897 -0
- src/harness/src/openharness/channels/impl/qq.py +141 -0
- src/harness/src/openharness/channels/impl/slack.py +284 -0
- src/harness/src/openharness/channels/impl/telegram.py +525 -0
- src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
- src/harness/src/openharness/cli.py +2551 -0
- src/harness/src/openharness/commands/__init__.py +21 -0
- src/harness/src/openharness/commands/registry.py +2783 -0
- src/harness/src/openharness/config/__init__.py +34 -0
- src/harness/src/openharness/config/paths.py +160 -0
- src/harness/src/openharness/config/schema.py +119 -0
- src/harness/src/openharness/config/settings.py +1104 -0
- src/harness/src/openharness/coordinator/__init__.py +12 -0
- src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
- src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
- src/harness/src/openharness/engine/__init__.py +80 -0
- src/harness/src/openharness/engine/cost_tracker.py +24 -0
- src/harness/src/openharness/engine/messages.py +222 -0
- src/harness/src/openharness/engine/query.py +1188 -0
- src/harness/src/openharness/engine/query_engine.py +313 -0
- src/harness/src/openharness/engine/stream_events.py +90 -0
- src/harness/src/openharness/hooks/__init__.py +50 -0
- src/harness/src/openharness/hooks/events.py +20 -0
- src/harness/src/openharness/hooks/executor.py +242 -0
- src/harness/src/openharness/hooks/hot_reload.py +31 -0
- src/harness/src/openharness/hooks/loader.py +68 -0
- src/harness/src/openharness/hooks/schemas.py +66 -0
- src/harness/src/openharness/hooks/types.py +38 -0
- src/harness/src/openharness/keybindings/__init__.py +14 -0
- src/harness/src/openharness/keybindings/default_bindings.py +11 -0
- src/harness/src/openharness/keybindings/loader.py +22 -0
- src/harness/src/openharness/keybindings/parser.py +18 -0
- src/harness/src/openharness/keybindings/resolver.py +13 -0
- src/harness/src/openharness/mcp/__init__.py +79 -0
- src/harness/src/openharness/mcp/client.py +298 -0
- src/harness/src/openharness/mcp/config.py +16 -0
- src/harness/src/openharness/mcp/types.py +76 -0
- src/harness/src/openharness/memory/__init__.py +25 -0
- src/harness/src/openharness/memory/agent.py +91 -0
- src/harness/src/openharness/memory/manager.py +183 -0
- src/harness/src/openharness/memory/memdir.py +52 -0
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- src/harness/src/openharness/swarm/team_lifecycle.py +910 -0
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- src/harness/src/openharness/tasks/manager.py +475 -0
- src/harness/src/openharness/tasks/stop_task.py +11 -0
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- src/harness/src/openharness/themes/builtin.py +89 -0
- src/harness/src/openharness/themes/loader.py +55 -0
- src/harness/src/openharness/themes/schema.py +54 -0
- src/harness/src/openharness/tools/__init__.py +107 -0
- src/harness/src/openharness/tools/agent_tool.py +141 -0
- src/harness/src/openharness/tools/ask_user_question_tool.py +46 -0
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- src/harness/src/openharness/tools/bash_tool.py +259 -0
- src/harness/src/openharness/tools/brief_tool.py +33 -0
- src/harness/src/openharness/tools/config_tool.py +54 -0
- src/harness/src/openharness/tools/cron_create_tool.py +105 -0
- src/harness/src/openharness/tools/cron_delete_tool.py +32 -0
- src/harness/src/openharness/tools/cron_list_tool.py +69 -0
- src/harness/src/openharness/tools/cron_toggle_tool.py +37 -0
- src/harness/src/openharness/tools/enter_plan_mode_tool.py +28 -0
- src/harness/src/openharness/tools/enter_worktree_tool.py +80 -0
- src/harness/src/openharness/tools/exit_plan_mode_tool.py +28 -0
- src/harness/src/openharness/tools/exit_worktree_tool.py +42 -0
- src/harness/src/openharness/tools/file_edit_tool.py +95 -0
- src/harness/src/openharness/tools/file_read_tool.py +72 -0
- src/harness/src/openharness/tools/file_write_tool.py +87 -0
- src/harness/src/openharness/tools/glob_tool.py +175 -0
- src/harness/src/openharness/tools/grep_tool.py +374 -0
- src/harness/src/openharness/tools/image_generation_tool.py +447 -0
- src/harness/src/openharness/tools/image_to_text_tool.py +237 -0
- src/harness/src/openharness/tools/list_mcp_resources_tool.py +36 -0
- src/harness/src/openharness/tools/lsp_tool.py +154 -0
- src/harness/src/openharness/tools/mcp_auth_tool.py +71 -0
- src/harness/src/openharness/tools/mcp_tool.py +72 -0
- src/harness/src/openharness/tools/notebook_edit_tool.py +97 -0
- src/harness/src/openharness/tools/read_mcp_resource_tool.py +38 -0
- src/harness/src/openharness/tools/remote_trigger_tool.py +74 -0
- src/harness/src/openharness/tools/send_message_tool.py +58 -0
- src/harness/src/openharness/tools/skill_tool.py +43 -0
- src/harness/src/openharness/tools/sleep_tool.py +32 -0
- src/harness/src/openharness/tools/task_create_tool.py +56 -0
- src/harness/src/openharness/tools/task_get_tool.py +33 -0
- src/harness/src/openharness/tools/task_list_tool.py +35 -0
- src/harness/src/openharness/tools/task_output_tool.py +35 -0
- src/harness/src/openharness/tools/task_stop_tool.py +30 -0
- src/harness/src/openharness/tools/task_update_tool.py +50 -0
- src/harness/src/openharness/tools/team_create_tool.py +31 -0
- src/harness/src/openharness/tools/team_delete_tool.py +30 -0
- src/harness/src/openharness/tools/todo_write_tool.py +46 -0
- src/harness/src/openharness/tools/tool_search_tool.py +38 -0
- src/harness/src/openharness/tools/web_fetch_tool.py +117 -0
- src/harness/src/openharness/tools/web_search_tool.py +119 -0
- src/harness/src/openharness/ui/__init__.py +5 -0
- src/harness/src/openharness/ui/app.py +320 -0
- src/harness/src/openharness/ui/backend_host.py +941 -0
- src/harness/src/openharness/ui/coordinator_drain.py +198 -0
- src/harness/src/openharness/ui/input.py +32 -0
- src/harness/src/openharness/ui/output.py +265 -0
- src/harness/src/openharness/ui/permission_dialog.py +14 -0
- src/harness/src/openharness/ui/protocol.py +247 -0
- src/harness/src/openharness/ui/react_launcher.py +179 -0
- src/harness/src/openharness/ui/runtime.py +799 -0
- src/harness/src/openharness/ui/textual_app.py +495 -0
- src/harness/src/openharness/utils/__init__.py +0 -0
- src/harness/src/openharness/utils/file_lock.py +86 -0
- src/harness/src/openharness/utils/fs.py +98 -0
- src/harness/src/openharness/utils/helpers.py +77 -0
- src/harness/src/openharness/utils/network_guard.py +340 -0
- src/harness/src/openharness/utils/shell.py +147 -0
- src/harness/src/openharness/vim/__init__.py +5 -0
- src/harness/src/openharness/vim/transitions.py +8 -0
- src/harness/src/openharness/voice/__init__.py +7 -0
- src/harness/src/openharness/voice/keyterms.py +10 -0
- src/harness/src/openharness/voice/stream_stt.py +8 -0
- src/harness/src/openharness/voice/voice_mode.py +44 -0
- src/llm/__init__.py +29 -0
- src/llm/image_generation.py +402 -0
- src/llm/provider_registry.py +419 -0
- src/llm/runtime_env.py +64 -0
- src/llm/structured_output.py +131 -0
- src/llm/vision.py +198 -0
- src/memory/__init__.py +2 -0
- src/memory/api/__init__.py +1 -0
- src/memory/api/base_memory_system_api.py +98 -0
- src/memory/api/base_symbolic_memory_system_api.py +190 -0
- src/memory/api/base_vector_memory_system_api.py +116 -0
- src/memory/api/faiss_memory_system_api.py +228 -0
- src/memory/api/slot_process_api.py +827 -0
- src/memory/api/symbolic_memory_system_api.py +572 -0
- src/memory/memory_system/__init__.py +48 -0
- src/memory/memory_system/component_taxonomy.py +430 -0
- src/memory/memory_system/llm.py +437 -0
- src/memory/memory_system/models.py +168 -0
- src/memory/memory_system/user_prompt.py +418 -0
- src/memory/memory_system/utils.py +282 -0
- src/memory/memory_system/vectorstore.py +311 -0
- src/memory/memory_system/working_slot.py +99 -0
- src/pipeline/__init__.py +129 -0
- src/pipeline/contracts.py +531 -0
- src/pipeline/discipline_taxonomy.py +916 -0
- src/pipeline/evidence_coverage_ledger.py +1150 -0
- src/pipeline/evidence_refinement.py +620 -0
- src/pipeline/experiment_to_symbolic.py +137 -0
- src/pipeline/multimodal_evidence/__init__.py +28 -0
- src/pipeline/multimodal_evidence/capabilities.py +107 -0
- src/pipeline/multimodal_evidence/claims.py +135 -0
- src/pipeline/multimodal_evidence/contract.py +291 -0
- src/pipeline/multimodal_evidence/data_sh_compiler.py +505 -0
- src/pipeline/multimodal_evidence/handoff_binding.py +135 -0
- src/pipeline/multimodal_evidence/manifest.py +254 -0
- src/pipeline/multimodal_evidence/native_analysis.py +479 -0
- src/pipeline/multimodal_evidence/perception.py +277 -0
- src/pipeline/multimodal_evidence/query_binding.py +65 -0
- src/pipeline/multimodal_evidence/rendering.py +120 -0
- src/pipeline/multimodal_evidence/safety.py +42 -0
- src/pipeline/multimodal_evidence/sampling.py +69 -0
- src/pipeline/multimodal_evidence/service.py +148 -0
- src/pipeline/multimodal_evidence/survey_integration.py +460 -0
- src/pipeline/paper_identity.py +52 -0
- src/pipeline/research_design_inventory.py +338 -0
- src/pipeline/research_domain_resolution.py +669 -0
- src/pipeline/research_identity.py +548 -0
- src/pipeline/research_question_contract.py +646 -0
- src/pipeline/retrieval_lanes.py +889 -0
- src/pipeline/run_loop.py +862 -0
- src/pipeline/science_events.py +30 -0
- src/pipeline/science_manifests.py +602 -0
- src/pipeline/science_run.py +918 -0
- src/pipeline/science_stages.py +709 -0
- src/pipeline/science_workflow.py +807 -0
- src/pipeline/sh_cluster_projection.py +306 -0
- src/pipeline/sh_graph_provenance.py +648 -0
- src/pipeline/subhypothesis_decomposition.py +392 -0
- src/pipeline/subhypothesis_evidence.py +856 -0
- src/pipeline/survey_evidence_plan.py +858 -0
- src/pipeline/survey_gap_adjudication.py +647 -0
- src/pipeline/survey_gap_candidates.py +840 -0
- src/pipeline/survey_gap_ledger.py +683 -0
- src/pipeline/survey_gap_triage.py +401 -0
- src/pipeline/survey_handoff_persistence.py +481 -0
- src/pipeline/survey_handoff_projection.py +457 -0
- src/pipeline/survey_idea_handoff.py +1112 -0
- src/pipeline/survey_idea_loader.py +289 -0
- src/research_run_ids.py +11 -0
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"""Generic route policies used to cross mature-idea seeds with search strategies."""
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route_id: str
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label: str
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IdeaRoutePolicy(
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IdeaRoutePolicy(
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"object_substitution", "Object substitution", "Replace the primary scientific object or level of description",
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IdeaRoutePolicy(
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IdeaRoutePolicy(
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+
return sum(float(weights.get(field_name, 0.0)) for field_name in SCORE_WEIGHT_FIELDS)
|
|
41
|
+
|
|
42
|
+
|
|
43
|
+
IDEA_TASTE_PRESETS: Dict[str, IdeaTastePreset] = {
|
|
44
|
+
"moonshot_inventor": IdeaTastePreset(
|
|
45
|
+
mode="moonshot_inventor",
|
|
46
|
+
label="Moonshot Inventor",
|
|
47
|
+
summary=(
|
|
48
|
+
"Prioritize 0-to-1 mechanisms and outsized upside, while tolerating "
|
|
49
|
+
"higher implementation risk and structural complexity."
|
|
50
|
+
),
|
|
51
|
+
weights={
|
|
52
|
+
"alignment_weight": 0.14,
|
|
53
|
+
"complexity_weight": 0.06,
|
|
54
|
+
"novelty_weight": 0.27,
|
|
55
|
+
"surprise_weight": 0.22,
|
|
56
|
+
"impact_weight": 0.18,
|
|
57
|
+
"feasibility_weight": 0.05,
|
|
58
|
+
"clarity_weight": 0.03,
|
|
59
|
+
"conciseness_weight": 0.02,
|
|
60
|
+
"risk_weight": 0.02,
|
|
61
|
+
"protocol_weight": 0.01,
|
|
62
|
+
},
|
|
63
|
+
skill_bias={
|
|
64
|
+
"mechanism-commit-innovation": 1.0,
|
|
65
|
+
"theory-transfer-injection": 0.7,
|
|
66
|
+
"alternative-path-contrast": 0.15,
|
|
67
|
+
"multi-scale-coordinator": 0.05,
|
|
68
|
+
"hierarchical-decomposition": 0.35,
|
|
69
|
+
"feedback-closed-loop": 0.05,
|
|
70
|
+
"surgical-modularity": 0.25,
|
|
71
|
+
"speculative-execution-with-repair": 0.2,
|
|
72
|
+
},
|
|
73
|
+
instantiation_guidance=(
|
|
74
|
+
"Prefer one bold mechanism-level move with outsized upside. Let the "
|
|
75
|
+
"core novelty live in the task-solving path, not in extra scaffolding."
|
|
76
|
+
),
|
|
77
|
+
),
|
|
78
|
+
"bridge_builder": IdeaTastePreset(
|
|
79
|
+
mode="bridge_builder",
|
|
80
|
+
label="Bridge Builder",
|
|
81
|
+
summary=(
|
|
82
|
+
"Favor cross-domain transfer: reusing strong ideas from domain A in "
|
|
83
|
+
"domain B, with less emphasis on raw novelty and more on fit."
|
|
84
|
+
),
|
|
85
|
+
weights={
|
|
86
|
+
"alignment_weight": 0.16,
|
|
87
|
+
"complexity_weight": 0.05,
|
|
88
|
+
"novelty_weight": 0.17,
|
|
89
|
+
"surprise_weight": 0.10,
|
|
90
|
+
"impact_weight": 0.18,
|
|
91
|
+
"feasibility_weight": 0.13,
|
|
92
|
+
"clarity_weight": 0.06,
|
|
93
|
+
"conciseness_weight": 0.02,
|
|
94
|
+
"risk_weight": 0.07,
|
|
95
|
+
"protocol_weight": 0.06,
|
|
96
|
+
},
|
|
97
|
+
skill_bias={
|
|
98
|
+
"theory-transfer-injection": 1.0,
|
|
99
|
+
"multi-scale-coordinator": 0.15,
|
|
100
|
+
"hierarchical-decomposition": 0.6,
|
|
101
|
+
"alternative-path-contrast": 0.15,
|
|
102
|
+
"feedback-closed-loop": 0.1,
|
|
103
|
+
"mechanism-commit-innovation": 0.25,
|
|
104
|
+
"surgical-modularity": 0.25,
|
|
105
|
+
"speculative-execution-with-repair": 0.15,
|
|
106
|
+
},
|
|
107
|
+
instantiation_guidance=(
|
|
108
|
+
"Emphasize the transferable principle, adaptation point, and fit to the "
|
|
109
|
+
"current domain. Make negative-transfer risks explicit."
|
|
110
|
+
),
|
|
111
|
+
),
|
|
112
|
+
"steady_engineer": IdeaTastePreset(
|
|
113
|
+
mode="steady_engineer",
|
|
114
|
+
label="Steady Engineer",
|
|
115
|
+
summary=(
|
|
116
|
+
"Optimize for stable, highly feasible ideas that are easy to execute "
|
|
117
|
+
"and less likely to fail."
|
|
118
|
+
),
|
|
119
|
+
weights={
|
|
120
|
+
"alignment_weight": 0.17,
|
|
121
|
+
"complexity_weight": 0.04,
|
|
122
|
+
"novelty_weight": 0.16,
|
|
123
|
+
"surprise_weight": 0.07,
|
|
124
|
+
"impact_weight": 0.18,
|
|
125
|
+
"feasibility_weight": 0.16,
|
|
126
|
+
"clarity_weight": 0.08,
|
|
127
|
+
"conciseness_weight": 0.02,
|
|
128
|
+
"risk_weight": 0.07,
|
|
129
|
+
"protocol_weight": 0.05,
|
|
130
|
+
},
|
|
131
|
+
skill_bias={
|
|
132
|
+
"surgical-modularity": 1.0,
|
|
133
|
+
"feedback-closed-loop": 0.35,
|
|
134
|
+
"hierarchical-decomposition": 0.45,
|
|
135
|
+
"alternative-path-contrast": 0.1,
|
|
136
|
+
"mechanism-commit-innovation": 0.3,
|
|
137
|
+
"multi-scale-coordinator": 0.05,
|
|
138
|
+
"speculative-execution-with-repair": 0.2,
|
|
139
|
+
"theory-transfer-injection": 0.15,
|
|
140
|
+
},
|
|
141
|
+
instantiation_guidance=(
|
|
142
|
+
"Favor minimal, well-scoped edits with clean interfaces and clear "
|
|
143
|
+
"validation. Avoid avoidable architectural sprawl."
|
|
144
|
+
),
|
|
145
|
+
),
|
|
146
|
+
"ambitious_realist": IdeaTastePreset(
|
|
147
|
+
mode="ambitious_realist",
|
|
148
|
+
label="Ambitious Realist",
|
|
149
|
+
summary=(
|
|
150
|
+
"Default search posture for high-upside ideas: strongly favor novelty "
|
|
151
|
+
"and impact, while keeping enough feasibility, alignment, and risk "
|
|
152
|
+
"control to avoid drifting into empty moonshots."
|
|
153
|
+
),
|
|
154
|
+
weights={
|
|
155
|
+
"alignment_weight": 0.15,
|
|
156
|
+
"complexity_weight": 0.05,
|
|
157
|
+
"novelty_weight": 0.22,
|
|
158
|
+
"surprise_weight": 0.14,
|
|
159
|
+
"impact_weight": 0.20,
|
|
160
|
+
"feasibility_weight": 0.08,
|
|
161
|
+
"clarity_weight": 0.06,
|
|
162
|
+
"conciseness_weight": 0.03,
|
|
163
|
+
"risk_weight": 0.05,
|
|
164
|
+
"protocol_weight": 0.02,
|
|
165
|
+
},
|
|
166
|
+
skill_bias={
|
|
167
|
+
"mechanism-commit-innovation": 1.0,
|
|
168
|
+
"theory-transfer-injection": 0.75,
|
|
169
|
+
"surgical-modularity": 0.55,
|
|
170
|
+
"multi-scale-coordinator": 0.08,
|
|
171
|
+
"hierarchical-decomposition": 0.4,
|
|
172
|
+
"alternative-path-contrast": 0.1,
|
|
173
|
+
"feedback-closed-loop": 0.08,
|
|
174
|
+
"speculative-execution-with-repair": 0.25,
|
|
175
|
+
},
|
|
176
|
+
instantiation_guidance=(
|
|
177
|
+
"Push for ambitious mechanisms with real upside, but keep the causal "
|
|
178
|
+
"story implementable and defensible."
|
|
179
|
+
),
|
|
180
|
+
),
|
|
181
|
+
"evidence_first": IdeaTastePreset(
|
|
182
|
+
mode="evidence_first",
|
|
183
|
+
label="Evidence First",
|
|
184
|
+
summary=(
|
|
185
|
+
"Prefer ideas that are easy to validate, ablate, and defend with "
|
|
186
|
+
"strong experimental evidence over flashy but brittle novelty."
|
|
187
|
+
),
|
|
188
|
+
weights={
|
|
189
|
+
"alignment_weight": 0.16,
|
|
190
|
+
"complexity_weight": 0.04,
|
|
191
|
+
"novelty_weight": 0.17,
|
|
192
|
+
"surprise_weight": 0.04,
|
|
193
|
+
"impact_weight": 0.16,
|
|
194
|
+
"feasibility_weight": 0.15,
|
|
195
|
+
"clarity_weight": 0.08,
|
|
196
|
+
"conciseness_weight": 0.02,
|
|
197
|
+
"risk_weight": 0.11,
|
|
198
|
+
"protocol_weight": 0.07,
|
|
199
|
+
},
|
|
200
|
+
skill_bias={
|
|
201
|
+
"surgical-modularity": 1.0,
|
|
202
|
+
"feedback-closed-loop": 0.35,
|
|
203
|
+
"alternative-path-contrast": 0.15,
|
|
204
|
+
"hierarchical-decomposition": 0.4,
|
|
205
|
+
"multi-scale-coordinator": 0.05,
|
|
206
|
+
"mechanism-commit-innovation": 0.25,
|
|
207
|
+
"theory-transfer-injection": 0.2,
|
|
208
|
+
"speculative-execution-with-repair": 0.2,
|
|
209
|
+
},
|
|
210
|
+
instantiation_guidance=(
|
|
211
|
+
"Prefer the lightest mechanism that yields strong ablations, stress "
|
|
212
|
+
"tests, and fair comparisons. Do not add novelty that cannot be cleanly validated."
|
|
213
|
+
),
|
|
214
|
+
),
|
|
215
|
+
}
|
|
216
|
+
|
|
217
|
+
|
|
218
|
+
def _add_scientific_weights_to_presets() -> None:
|
|
219
|
+
"""Extend legacy taste presets while preserving their relative priorities."""
|
|
220
|
+
scientific_weights = scientific_weight_defaults()
|
|
221
|
+
legacy_fields = SCORE_WEIGHT_FIELDS[: -len(scientific_weights)]
|
|
222
|
+
scientific_total = sum(scientific_weights.values())
|
|
223
|
+
legacy_total = 1.0 - scientific_total
|
|
224
|
+
for preset in IDEA_TASTE_PRESETS.values():
|
|
225
|
+
legacy_weights = {
|
|
226
|
+
field_name: max(0.0, float(preset.weights.get(field_name, 0.0)))
|
|
227
|
+
for field_name in legacy_fields
|
|
228
|
+
}
|
|
229
|
+
current_total = sum(legacy_weights.values())
|
|
230
|
+
if current_total <= 1e-9:
|
|
231
|
+
current_total = 1.0
|
|
232
|
+
for field_name in legacy_fields:
|
|
233
|
+
legacy_weights[field_name] = (
|
|
234
|
+
legacy_weights[field_name] / current_total * legacy_total
|
|
235
|
+
)
|
|
236
|
+
preset.weights.update(legacy_weights)
|
|
237
|
+
preset.weights.update(
|
|
238
|
+
{
|
|
239
|
+
field_name: value
|
|
240
|
+
for field_name, value in scientific_weights.items()
|
|
241
|
+
}
|
|
242
|
+
)
|
|
243
|
+
|
|
244
|
+
|
|
245
|
+
_add_scientific_weights_to_presets()
|
|
246
|
+
|
|
247
|
+
|
|
248
|
+
def list_idea_taste_presets() -> List[Dict[str, Any]]:
|
|
249
|
+
return [
|
|
250
|
+
{
|
|
251
|
+
"mode": preset.mode,
|
|
252
|
+
"label": preset.label,
|
|
253
|
+
"summary": preset.summary,
|
|
254
|
+
"weights": dict(preset.weights),
|
|
255
|
+
"skill_bias": dict(preset.skill_bias),
|
|
256
|
+
"instantiation_guidance": preset.instantiation_guidance,
|
|
257
|
+
}
|
|
258
|
+
for preset in IDEA_TASTE_PRESETS.values()
|
|
259
|
+
]
|
|
260
|
+
|
|
261
|
+
|
|
262
|
+
def get_idea_taste_preset(mode: Optional[str]) -> Optional[IdeaTastePreset]:
|
|
263
|
+
if mode is None:
|
|
264
|
+
return None
|
|
265
|
+
|
|
266
|
+
normalized = str(mode).strip().lower()
|
|
267
|
+
if not normalized:
|
|
268
|
+
return None
|
|
269
|
+
|
|
270
|
+
preset = IDEA_TASTE_PRESETS.get(normalized)
|
|
271
|
+
if preset is None:
|
|
272
|
+
available = ", ".join(sorted(IDEA_TASTE_PRESETS))
|
|
273
|
+
raise ValueError(
|
|
274
|
+
f"Unknown mcts.idea_taste_mode '{mode}'. Available presets: {available}"
|
|
275
|
+
)
|
|
276
|
+
|
|
277
|
+
missing = [
|
|
278
|
+
field_name for field_name in SCORE_WEIGHT_FIELDS if field_name not in preset.weights
|
|
279
|
+
]
|
|
280
|
+
if missing:
|
|
281
|
+
raise ValueError(
|
|
282
|
+
f"Idea taste preset '{preset.mode}' is missing score weights: "
|
|
283
|
+
f"{', '.join(missing)}"
|
|
284
|
+
)
|
|
285
|
+
|
|
286
|
+
if not isinstance(preset.skill_bias, dict):
|
|
287
|
+
raise ValueError(f"Idea taste preset '{preset.mode}' must define skill_bias as a dict.")
|
|
288
|
+
|
|
289
|
+
total = _weight_total(preset.weights)
|
|
290
|
+
if abs(total - 1.0) > 1e-6:
|
|
291
|
+
raise ValueError(
|
|
292
|
+
f"Idea taste preset '{preset.mode}' must have score weights summing to 1.0; got {total:.6f}."
|
|
293
|
+
)
|
|
294
|
+
|
|
295
|
+
for skill_name, raw_bias in preset.skill_bias.items():
|
|
296
|
+
try:
|
|
297
|
+
bias = float(raw_bias)
|
|
298
|
+
except (TypeError, ValueError) as exc:
|
|
299
|
+
raise ValueError(
|
|
300
|
+
f"Idea taste preset '{preset.mode}' has a non-numeric skill bias for '{skill_name}'."
|
|
301
|
+
) from exc
|
|
302
|
+
if not 0.0 <= bias <= 1.0:
|
|
303
|
+
raise ValueError(
|
|
304
|
+
f"Idea taste preset '{preset.mode}' has out-of-range skill bias for '{skill_name}': {bias}"
|
|
305
|
+
)
|
|
306
|
+
|
|
307
|
+
if not str(preset.instantiation_guidance).strip():
|
|
308
|
+
raise ValueError(
|
|
309
|
+
f"Idea taste preset '{preset.mode}' must define instantiation_guidance."
|
|
310
|
+
)
|
|
311
|
+
|
|
312
|
+
return preset
|