qwen-sci 0.2.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- qwen_sci-0.2.2.dist-info/METADATA +492 -0
- qwen_sci-0.2.2.dist-info/RECORD +549 -0
- qwen_sci-0.2.2.dist-info/WHEEL +4 -0
- qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
- qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
- src/1.txt +1 -0
- src/__init__.py +1 -0
- src/__main__.py +5 -0
- src/agents/__init__.py +1 -0
- src/agents/experiment_design_agent/__init__.py +268 -0
- src/agents/experiment_design_agent/artifacts.py +747 -0
- src/agents/experiment_design_agent/cache.py +319 -0
- src/agents/experiment_design_agent/completeness.py +130 -0
- src/agents/experiment_design_agent/contracts.py +771 -0
- src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
- src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
- src/agents/experiment_design_agent/discipline_catalog.py +178 -0
- src/agents/experiment_design_agent/evidence_cards.py +338 -0
- src/agents/experiment_design_agent/evidence_planner.py +452 -0
- src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
- src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
- src/agents/experiment_design_agent/idea_adapter.py +100 -0
- src/agents/experiment_design_agent/idea_intake.py +87 -0
- src/agents/experiment_design_agent/llm_json.py +328 -0
- src/agents/experiment_design_agent/orchestrator.py +1220 -0
- src/agents/experiment_design_agent/reasoning_context.py +183 -0
- src/agents/experiment_design_agent/reasoning_validation.py +546 -0
- src/agents/experiment_design_agent/run.py +481 -0
- src/agents/experiment_design_agent/run_logging.py +292 -0
- src/agents/experiment_design_agent/scope_gate.py +198 -0
- src/agents/experiment_design_agent/study_type_composer.py +1360 -0
- src/agents/experiment_design_agent/survey_evidence.py +1381 -0
- src/agents/experiment_design_agent/template_router.py +195 -0
- src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
- src/agents/idea_agent/__init__.py +1 -0
- src/agents/idea_agent/agent/__init__.py +6 -0
- src/agents/idea_agent/agent/artifacts.py +308 -0
- src/agents/idea_agent/agent/base.py +122 -0
- src/agents/idea_agent/agent/ligagent.py +488 -0
- src/agents/idea_agent/agent/mcts.py +2060 -0
- src/agents/idea_agent/agent/prompts/__init__.py +48 -0
- src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
- src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
- src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
- src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
- src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
- src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
- src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
- src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
- src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
- src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
- src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
- src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
- src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
- src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
- src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
- src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
- src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
- src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
- src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
- src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
- src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
- src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
- src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
- src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
- src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
- src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
- src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
- src/agents/idea_agent/example/idea_result.json +900 -0
- src/agents/idea_agent/run.py +276 -0
- src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
- src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
- src/agents/idea_agent/tests/test_idea_debate.py +480 -0
- src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
- src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
- src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
- src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
- src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
- src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
- src/agents/idea_agent/tests/test_result_persistence.py +183 -0
- src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
- src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
- src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
- src/agents/idea_agent/utils/core/__init__.py +1 -0
- src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
- src/agents/idea_agent/utils/core/chat_errors.py +95 -0
- src/agents/idea_agent/utils/core/chat_router.py +130 -0
- src/agents/idea_agent/utils/core/chat_transport.py +188 -0
- src/agents/idea_agent/utils/core/config_loader.py +166 -0
- src/agents/idea_agent/utils/core/json_utils.py +28 -0
- src/agents/idea_agent/utils/core/logger.py +287 -0
- src/agents/idea_agent/utils/core/progress.py +58 -0
- src/agents/idea_agent/utils/core/response_parsing.py +57 -0
- src/agents/idea_agent/utils/core/run_inputs.py +198 -0
- src/agents/idea_agent/utils/mcts/__init__.py +1 -0
- src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
- src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
- src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
- src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
- src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
- src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
- src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
- src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
- src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
- src/agents/idea_agent/utils/papers/__init__.py +1 -0
- src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
- src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
- src/agents/idea_agent/utils/prompting/__init__.py +1 -0
- src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
- src/agents/idea_agent/utils/workflow/__init__.py +1 -0
- src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
- src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
- src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
- src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
- src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
- src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
- src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
- src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
- src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
- src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
- src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
- src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
- src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
- src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
- src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
- src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
- src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
- src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
- src/agents/research_plan_author/__init__.py +50 -0
- src/agents/research_plan_author/artifacts.py +270 -0
- src/agents/research_plan_author/authoring_blueprint.py +1246 -0
- src/agents/research_plan_author/bibtex_renderer.py +252 -0
- src/agents/research_plan_author/contract_repair.py +131 -0
- src/agents/research_plan_author/contracts.py +745 -0
- src/agents/research_plan_author/cross_section_editor.py +232 -0
- src/agents/research_plan_author/document_quality.py +987 -0
- src/agents/research_plan_author/idea_evolution.py +223 -0
- src/agents/research_plan_author/input_loader.py +76 -0
- src/agents/research_plan_author/latex_compiler.py +260 -0
- src/agents/research_plan_author/latex_safety.py +159 -0
- src/agents/research_plan_author/llm_json.py +74 -0
- src/agents/research_plan_author/markdown_renderer.py +275 -0
- src/agents/research_plan_author/pdf_validator.py +149 -0
- src/agents/research_plan_author/render.py +166 -0
- src/agents/research_plan_author/render_artifacts.py +187 -0
- src/agents/research_plan_author/run.py +765 -0
- src/agents/research_plan_author/run_logging.py +209 -0
- src/agents/research_plan_author/section_cache.py +184 -0
- src/agents/research_plan_author/section_composer.py +1764 -0
- src/agents/research_plan_author/section_router.py +209 -0
- src/agents/research_plan_author/semantic_validator.py +254 -0
- src/agents/research_plan_author/source_bundle.py +46 -0
- src/agents/research_plan_author/source_registry.py +208 -0
- src/agents/research_plan_author/survey_source_loader.py +137 -0
- src/agents/research_plan_author/template_adapter.py +173 -0
- src/agents/research_plan_author/template_profile.py +204 -0
- src/agents/research_plan_author/tex_renderer.py +496 -0
- src/agents/research_plan_author/theory_presentation.py +134 -0
- src/agents/research_plan_author/theory_spine.py +703 -0
- src/agents/survey_agent/Dockerfile +54 -0
- src/agents/survey_agent/README.md +350 -0
- src/agents/survey_agent/config/deep_survey.yaml +217 -0
- src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
- src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
- src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
- src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
- src/agents/survey_agent/env_report.md +348 -0
- src/agents/survey_agent/modules/__init__.py +0 -0
- src/agents/survey_agent/modules/code_collector.py +2194 -0
- src/agents/survey_agent/modules/code_report_generator.py +1282 -0
- src/agents/survey_agent/modules/data_manager.py +1713 -0
- src/agents/survey_agent/modules/database.py +167 -0
- src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
- src/agents/survey_agent/modules/fulltext_http.py +134 -0
- src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
- src/agents/survey_agent/modules/judge.py +434 -0
- src/agents/survey_agent/modules/outcome_RAG.py +236 -0
- src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
- src/agents/survey_agent/modules/pe.py +1729 -0
- src/agents/survey_agent/modules/pseudo_creator.py +782 -0
- src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
- src/agents/survey_agent/modules/refine_agent.py +1952 -0
- src/agents/survey_agent/modules/survey_generator.py +5691 -0
- src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
- src/agents/survey_agent/modules/visual_prompts.py +327 -0
- src/agents/survey_agent/modules/work_analyzer.py +2750 -0
- src/agents/survey_agent/modules/work_collector.py +5649 -0
- src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
- src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
- src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
- src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
- src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
- src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
- src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
- src/agents/survey_agent/utils/__init__.py +0 -0
- src/agents/survey_agent/utils/ablation_utils.py +317 -0
- src/agents/survey_agent/utils/api_call.py +2518 -0
- src/agents/survey_agent/utils/chat_utils.py +82 -0
- src/agents/survey_agent/utils/config_utils.py +70 -0
- src/agents/survey_agent/utils/convert_to_md.py +29 -0
- src/agents/survey_agent/utils/err_info.py +24 -0
- src/agents/survey_agent/utils/file_utils.py +176 -0
- src/agents/survey_agent/utils/gpu_utils.py +145 -0
- src/agents/survey_agent/utils/graph_visualizer.py +279 -0
- src/agents/survey_agent/utils/html_utils.py +181 -0
- src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
- src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
- src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
- src/agents/survey_agent/utils/mineru_utils.py +396 -0
- src/agents/survey_agent/utils/paper.py +144 -0
- src/agents/survey_agent/utils/read_yaml.py +15 -0
- src/agents/survey_agent/utils/repo_utils.py +167 -0
- src/agents/survey_agent/utils/rich_logger.py +77 -0
- src/agents/survey_agent/utils/step2v2.py +874 -0
- src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
- src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
- src/agents/survey_agent/utils/utils.py +118 -0
- src/agents/survey_agent/utils/work.py +2 -0
- src/cli.py +1611 -0
- src/config/__init__.py +213 -0
- src/config/default.yaml +1122 -0
- src/harness/LICENSE +21 -0
- src/harness/VENDORED.md +14 -0
- src/harness/src/__init__.py +0 -0
- src/harness/src/openharness/__init__.py +0 -0
- src/harness/src/openharness/__main__.py +6 -0
- src/harness/src/openharness/api/__init__.py +21 -0
- src/harness/src/openharness/api/client.py +281 -0
- src/harness/src/openharness/api/codex_client.py +407 -0
- src/harness/src/openharness/api/copilot_auth.py +240 -0
- src/harness/src/openharness/api/copilot_client.py +134 -0
- src/harness/src/openharness/api/errors.py +19 -0
- src/harness/src/openharness/api/openai_client.py +577 -0
- src/harness/src/openharness/api/provider.py +186 -0
- src/harness/src/openharness/api/registry.py +437 -0
- src/harness/src/openharness/api/usage.py +17 -0
- src/harness/src/openharness/auth/__init__.py +29 -0
- src/harness/src/openharness/auth/external.py +610 -0
- src/harness/src/openharness/auth/flows.py +189 -0
- src/harness/src/openharness/auth/manager.py +482 -0
- src/harness/src/openharness/auth/storage.py +269 -0
- src/harness/src/openharness/autopilot/__init__.py +23 -0
- src/harness/src/openharness/autopilot/service.py +2239 -0
- src/harness/src/openharness/autopilot/types.py +91 -0
- src/harness/src/openharness/bridge/__init__.py +20 -0
- src/harness/src/openharness/bridge/manager.py +106 -0
- src/harness/src/openharness/bridge/session_runner.py +46 -0
- src/harness/src/openharness/bridge/types.py +37 -0
- src/harness/src/openharness/bridge/work_secret.py +41 -0
- src/harness/src/openharness/channels/UPSTREAM +6 -0
- src/harness/src/openharness/channels/__init__.py +22 -0
- src/harness/src/openharness/channels/adapter.py +131 -0
- src/harness/src/openharness/channels/bus/__init__.py +6 -0
- src/harness/src/openharness/channels/bus/events.py +38 -0
- src/harness/src/openharness/channels/bus/queue.py +44 -0
- src/harness/src/openharness/channels/impl/__init__.py +6 -0
- src/harness/src/openharness/channels/impl/base.py +141 -0
- src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
- src/harness/src/openharness/channels/impl/discord.py +311 -0
- src/harness/src/openharness/channels/impl/email.py +410 -0
- src/harness/src/openharness/channels/impl/feishu.py +1342 -0
- src/harness/src/openharness/channels/impl/manager.py +257 -0
- src/harness/src/openharness/channels/impl/matrix.py +700 -0
- src/harness/src/openharness/channels/impl/mochat.py +897 -0
- src/harness/src/openharness/channels/impl/qq.py +141 -0
- src/harness/src/openharness/channels/impl/slack.py +284 -0
- src/harness/src/openharness/channels/impl/telegram.py +525 -0
- src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
- src/harness/src/openharness/cli.py +2551 -0
- src/harness/src/openharness/commands/__init__.py +21 -0
- src/harness/src/openharness/commands/registry.py +2783 -0
- src/harness/src/openharness/config/__init__.py +34 -0
- src/harness/src/openharness/config/paths.py +160 -0
- src/harness/src/openharness/config/schema.py +119 -0
- src/harness/src/openharness/config/settings.py +1104 -0
- src/harness/src/openharness/coordinator/__init__.py +12 -0
- src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
- src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
- src/harness/src/openharness/engine/__init__.py +80 -0
- src/harness/src/openharness/engine/cost_tracker.py +24 -0
- src/harness/src/openharness/engine/messages.py +222 -0
- src/harness/src/openharness/engine/query.py +1188 -0
- src/harness/src/openharness/engine/query_engine.py +313 -0
- src/harness/src/openharness/engine/stream_events.py +90 -0
- src/harness/src/openharness/hooks/__init__.py +50 -0
- src/harness/src/openharness/hooks/events.py +20 -0
- src/harness/src/openharness/hooks/executor.py +242 -0
- src/harness/src/openharness/hooks/hot_reload.py +31 -0
- src/harness/src/openharness/hooks/loader.py +68 -0
- src/harness/src/openharness/hooks/schemas.py +66 -0
- src/harness/src/openharness/hooks/types.py +38 -0
- src/harness/src/openharness/keybindings/__init__.py +14 -0
- src/harness/src/openharness/keybindings/default_bindings.py +11 -0
- src/harness/src/openharness/keybindings/loader.py +22 -0
- src/harness/src/openharness/keybindings/parser.py +18 -0
- src/harness/src/openharness/keybindings/resolver.py +13 -0
- src/harness/src/openharness/mcp/__init__.py +79 -0
- src/harness/src/openharness/mcp/client.py +298 -0
- src/harness/src/openharness/mcp/config.py +16 -0
- src/harness/src/openharness/mcp/types.py +76 -0
- src/harness/src/openharness/memory/__init__.py +25 -0
- src/harness/src/openharness/memory/agent.py +91 -0
- src/harness/src/openharness/memory/manager.py +183 -0
- src/harness/src/openharness/memory/memdir.py +52 -0
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- src/harness/src/openharness/tasks/stop_task.py +11 -0
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- src/harness/src/openharness/tools/ask_user_question_tool.py +46 -0
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- src/harness/src/openharness/tools/bash_tool.py +259 -0
- src/harness/src/openharness/tools/brief_tool.py +33 -0
- src/harness/src/openharness/tools/config_tool.py +54 -0
- src/harness/src/openharness/tools/cron_create_tool.py +105 -0
- src/harness/src/openharness/tools/cron_delete_tool.py +32 -0
- src/harness/src/openharness/tools/cron_list_tool.py +69 -0
- src/harness/src/openharness/tools/cron_toggle_tool.py +37 -0
- src/harness/src/openharness/tools/enter_plan_mode_tool.py +28 -0
- src/harness/src/openharness/tools/enter_worktree_tool.py +80 -0
- src/harness/src/openharness/tools/exit_plan_mode_tool.py +28 -0
- src/harness/src/openharness/tools/exit_worktree_tool.py +42 -0
- src/harness/src/openharness/tools/file_edit_tool.py +95 -0
- src/harness/src/openharness/tools/file_read_tool.py +72 -0
- src/harness/src/openharness/tools/file_write_tool.py +87 -0
- src/harness/src/openharness/tools/glob_tool.py +175 -0
- src/harness/src/openharness/tools/grep_tool.py +374 -0
- src/harness/src/openharness/tools/image_generation_tool.py +447 -0
- src/harness/src/openharness/tools/image_to_text_tool.py +237 -0
- src/harness/src/openharness/tools/list_mcp_resources_tool.py +36 -0
- src/harness/src/openharness/tools/lsp_tool.py +154 -0
- src/harness/src/openharness/tools/mcp_auth_tool.py +71 -0
- src/harness/src/openharness/tools/mcp_tool.py +72 -0
- src/harness/src/openharness/tools/notebook_edit_tool.py +97 -0
- src/harness/src/openharness/tools/read_mcp_resource_tool.py +38 -0
- src/harness/src/openharness/tools/remote_trigger_tool.py +74 -0
- src/harness/src/openharness/tools/send_message_tool.py +58 -0
- src/harness/src/openharness/tools/skill_tool.py +43 -0
- src/harness/src/openharness/tools/sleep_tool.py +32 -0
- src/harness/src/openharness/tools/task_create_tool.py +56 -0
- src/harness/src/openharness/tools/task_get_tool.py +33 -0
- src/harness/src/openharness/tools/task_list_tool.py +35 -0
- src/harness/src/openharness/tools/task_output_tool.py +35 -0
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- src/harness/src/openharness/tools/task_update_tool.py +50 -0
- src/harness/src/openharness/tools/team_create_tool.py +31 -0
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- src/harness/src/openharness/tools/todo_write_tool.py +46 -0
- src/harness/src/openharness/tools/tool_search_tool.py +38 -0
- src/harness/src/openharness/tools/web_fetch_tool.py +117 -0
- src/harness/src/openharness/tools/web_search_tool.py +119 -0
- src/harness/src/openharness/ui/__init__.py +5 -0
- src/harness/src/openharness/ui/app.py +320 -0
- src/harness/src/openharness/ui/backend_host.py +941 -0
- src/harness/src/openharness/ui/coordinator_drain.py +198 -0
- src/harness/src/openharness/ui/input.py +32 -0
- src/harness/src/openharness/ui/output.py +265 -0
- src/harness/src/openharness/ui/permission_dialog.py +14 -0
- src/harness/src/openharness/ui/protocol.py +247 -0
- src/harness/src/openharness/ui/react_launcher.py +179 -0
- src/harness/src/openharness/ui/runtime.py +799 -0
- src/harness/src/openharness/ui/textual_app.py +495 -0
- src/harness/src/openharness/utils/__init__.py +0 -0
- src/harness/src/openharness/utils/file_lock.py +86 -0
- src/harness/src/openharness/utils/fs.py +98 -0
- src/harness/src/openharness/utils/helpers.py +77 -0
- src/harness/src/openharness/utils/network_guard.py +340 -0
- src/harness/src/openharness/utils/shell.py +147 -0
- src/harness/src/openharness/vim/__init__.py +5 -0
- src/harness/src/openharness/vim/transitions.py +8 -0
- src/harness/src/openharness/voice/__init__.py +7 -0
- src/harness/src/openharness/voice/keyterms.py +10 -0
- src/harness/src/openharness/voice/stream_stt.py +8 -0
- src/harness/src/openharness/voice/voice_mode.py +44 -0
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- src/llm/image_generation.py +402 -0
- src/llm/provider_registry.py +419 -0
- src/llm/runtime_env.py +64 -0
- src/llm/structured_output.py +131 -0
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- src/pipeline/sh_graph_provenance.py +648 -0
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- src/pipeline/survey_evidence_plan.py +858 -0
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- src/pipeline/survey_idea_handoff.py +1112 -0
- src/pipeline/survey_idea_loader.py +289 -0
- src/research_run_ids.py +11 -0
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"target_object",
|
|
100
|
+
"target_condition",
|
|
101
|
+
"direct_observation",
|
|
102
|
+
),
|
|
103
|
+
"required_scope": (
|
|
104
|
+
"research_object",
|
|
105
|
+
"condition_or_regime",
|
|
106
|
+
"outcome_or_construct",
|
|
107
|
+
),
|
|
108
|
+
},
|
|
109
|
+
"COMPARATIVE_EVALUATION": {
|
|
110
|
+
"required_slots": (
|
|
111
|
+
"candidate",
|
|
112
|
+
"comparator",
|
|
113
|
+
"comparison_condition",
|
|
114
|
+
"comparable_endpoint",
|
|
115
|
+
),
|
|
116
|
+
"required_scope": (
|
|
117
|
+
"research_object",
|
|
118
|
+
"comparison_frame",
|
|
119
|
+
"outcome_or_construct",
|
|
120
|
+
),
|
|
121
|
+
},
|
|
122
|
+
"MECHANISM_EXPLANATION": {
|
|
123
|
+
"required_slots": (
|
|
124
|
+
"input_or_condition",
|
|
125
|
+
"common_outcome",
|
|
126
|
+
"candidate_mechanism",
|
|
127
|
+
"discriminating_observation",
|
|
128
|
+
),
|
|
129
|
+
"required_scope": (
|
|
130
|
+
"research_object",
|
|
131
|
+
"intervention_or_input",
|
|
132
|
+
"outcome_or_construct",
|
|
133
|
+
),
|
|
134
|
+
},
|
|
135
|
+
"BOUNDARY_HETEROGENEITY": {
|
|
136
|
+
"required_slots": (
|
|
137
|
+
"base_relation",
|
|
138
|
+
"boundary_variable",
|
|
139
|
+
"condition_a",
|
|
140
|
+
"condition_b",
|
|
141
|
+
"comparable_endpoint",
|
|
142
|
+
),
|
|
143
|
+
"required_scope": (
|
|
144
|
+
"research_object",
|
|
145
|
+
"condition_or_regime",
|
|
146
|
+
"outcome_or_construct",
|
|
147
|
+
),
|
|
148
|
+
},
|
|
149
|
+
"REPLICATION_CONTRADICTION": {
|
|
150
|
+
"required_slots": (
|
|
151
|
+
"shared_claim",
|
|
152
|
+
"result_a",
|
|
153
|
+
"result_b",
|
|
154
|
+
"comparability_axes",
|
|
155
|
+
),
|
|
156
|
+
"required_scope": ("research_object", "outcome_or_construct"),
|
|
157
|
+
},
|
|
158
|
+
"MEASUREMENT_VALIDITY": {
|
|
159
|
+
"required_slots": (
|
|
160
|
+
"construct",
|
|
161
|
+
"proxy_or_measure",
|
|
162
|
+
"reference_or_target_measure",
|
|
163
|
+
"mapping_or_calibration",
|
|
164
|
+
),
|
|
165
|
+
"required_scope": (
|
|
166
|
+
"research_object",
|
|
167
|
+
"outcome_or_construct",
|
|
168
|
+
"measurement_or_endpoint",
|
|
169
|
+
),
|
|
170
|
+
},
|
|
171
|
+
"GENERALIZATION_TRANSPORT": {
|
|
172
|
+
"required_slots": (
|
|
173
|
+
"source_system",
|
|
174
|
+
"target_system",
|
|
175
|
+
"shift_or_variation",
|
|
176
|
+
"external_validation",
|
|
177
|
+
),
|
|
178
|
+
"required_scope": (
|
|
179
|
+
"research_object",
|
|
180
|
+
"population_or_system",
|
|
181
|
+
"condition_or_regime",
|
|
182
|
+
"outcome_or_construct",
|
|
183
|
+
),
|
|
184
|
+
},
|
|
185
|
+
"METHOD_DESIGN": {
|
|
186
|
+
"required_slots": (
|
|
187
|
+
"current_method_or_design",
|
|
188
|
+
"failure_or_bias",
|
|
189
|
+
"alternative_design",
|
|
190
|
+
"evaluation_criterion",
|
|
191
|
+
),
|
|
192
|
+
"required_scope": (
|
|
193
|
+
"research_object",
|
|
194
|
+
"method_or_design",
|
|
195
|
+
"outcome_or_construct",
|
|
196
|
+
),
|
|
197
|
+
},
|
|
198
|
+
"DATA_COVERAGE": {
|
|
199
|
+
"required_slots": (
|
|
200
|
+
"required_variable",
|
|
201
|
+
"coverage_range",
|
|
202
|
+
"missing_range",
|
|
203
|
+
"impact_on_claim",
|
|
204
|
+
),
|
|
205
|
+
"required_scope": (
|
|
206
|
+
"research_object",
|
|
207
|
+
"dataset_or_corpus",
|
|
208
|
+
"outcome_or_construct",
|
|
209
|
+
),
|
|
210
|
+
},
|
|
211
|
+
"THEORY_MODEL_VALIDITY": {
|
|
212
|
+
"required_slots": (
|
|
213
|
+
"formal_claim",
|
|
214
|
+
"assumption",
|
|
215
|
+
"validity_domain",
|
|
216
|
+
"falsification_or_counterexample",
|
|
217
|
+
),
|
|
218
|
+
"required_scope": (
|
|
219
|
+
"research_object",
|
|
220
|
+
"theoretical_assumptions",
|
|
221
|
+
"outcome_or_construct",
|
|
222
|
+
),
|
|
223
|
+
},
|
|
224
|
+
}
|
|
225
|
+
|
|
226
|
+
_ALLOWED_FIELDS = frozenset(
|
|
227
|
+
{
|
|
228
|
+
"schema_version",
|
|
229
|
+
"sub_hypothesis_id",
|
|
230
|
+
"title",
|
|
231
|
+
"question",
|
|
232
|
+
"question_kind",
|
|
233
|
+
"scientific_scope",
|
|
234
|
+
"required_slots",
|
|
235
|
+
"slot_definitions",
|
|
236
|
+
"research_role",
|
|
237
|
+
"challenge_target",
|
|
238
|
+
"design_basis_ids",
|
|
239
|
+
"allowed_evidence_scope",
|
|
240
|
+
"excluded_evidence_scope",
|
|
241
|
+
"exclusion_terms",
|
|
242
|
+
}
|
|
243
|
+
)
|
|
244
|
+
_SLOT_DEFINITION_FIELDS = frozenset(
|
|
245
|
+
{
|
|
246
|
+
"meaning",
|
|
247
|
+
"retrieval_concepts",
|
|
248
|
+
"retrieval_query_variants",
|
|
249
|
+
"minimum_evidence",
|
|
250
|
+
"admission_rule",
|
|
251
|
+
}
|
|
252
|
+
)
|
|
253
|
+
_RETRIEVAL_QUERY_VARIANT_FIELDS = frozenset(
|
|
254
|
+
{"variant_id", "purpose", "query_terms", "preferred_disciplines"}
|
|
255
|
+
)
|
|
256
|
+
|
|
257
|
+
|
|
258
|
+
def _text(value: Any, *, limit: int = 1000) -> str:
|
|
259
|
+
return re.sub(r"\s+", " ", str(value or "").strip())[:limit]
|
|
260
|
+
|
|
261
|
+
|
|
262
|
+
def _mapping(value: Any) -> dict[str, Any]:
|
|
263
|
+
return dict(value) if isinstance(value, Mapping) else {}
|
|
264
|
+
|
|
265
|
+
|
|
266
|
+
def _texts(value: Any, *, limit: int = 12) -> list[str]:
|
|
267
|
+
values = value if isinstance(value, Sequence) and not isinstance(value, (str, bytes)) else [value]
|
|
268
|
+
result: list[str] = []
|
|
269
|
+
seen: set[str] = set()
|
|
270
|
+
for value in values:
|
|
271
|
+
item = _text(value, limit=240)
|
|
272
|
+
key = item.casefold()
|
|
273
|
+
if not item or key in seen:
|
|
274
|
+
continue
|
|
275
|
+
seen.add(key)
|
|
276
|
+
result.append(item)
|
|
277
|
+
if len(result) >= limit:
|
|
278
|
+
break
|
|
279
|
+
return result
|
|
280
|
+
|
|
281
|
+
|
|
282
|
+
def _variant_id(value: Any, *, fallback: str) -> str:
|
|
283
|
+
normalized = re.sub(r"[^a-z0-9]+", "_", _text(value, limit=100).casefold()).strip("_")
|
|
284
|
+
return normalized[:80] or fallback
|
|
285
|
+
|
|
286
|
+
|
|
287
|
+
def _retrieval_query_variants(
|
|
288
|
+
value: Any,
|
|
289
|
+
*,
|
|
290
|
+
slot: str,
|
|
291
|
+
errors: list[str],
|
|
292
|
+
warnings: list[str],
|
|
293
|
+
) -> list[dict[str, Any]]:
|
|
294
|
+
"""Normalize optional, alternative retrieval paths for one SH slot.
|
|
295
|
+
|
|
296
|
+
Variants are candidate-discovery entry points. They must remain short and
|
|
297
|
+
independently meaningful, so they never encode an all-concepts evidence
|
|
298
|
+
requirement for a paper.
|
|
299
|
+
"""
|
|
300
|
+
|
|
301
|
+
if value is None:
|
|
302
|
+
return []
|
|
303
|
+
if not isinstance(value, Sequence) or isinstance(value, (str, bytes)):
|
|
304
|
+
errors.append(f"retrieval_query_variants_must_be_a_list:{slot}")
|
|
305
|
+
return []
|
|
306
|
+
if len(value) > MAX_RETRIEVAL_QUERY_VARIANTS_PER_SLOT:
|
|
307
|
+
errors.append(f"too_many_retrieval_query_variants:{slot}")
|
|
308
|
+
|
|
309
|
+
variants: list[dict[str, Any]] = []
|
|
310
|
+
seen_ids: set[str] = set()
|
|
311
|
+
for index, raw_variant in enumerate(value[:MAX_RETRIEVAL_QUERY_VARIANTS_PER_SLOT], start=1):
|
|
312
|
+
if not isinstance(raw_variant, Mapping):
|
|
313
|
+
errors.append(f"retrieval_query_variant_must_be_an_object:{slot}:{index}")
|
|
314
|
+
continue
|
|
315
|
+
unknown_fields = sorted(
|
|
316
|
+
key for key in raw_variant if key not in _RETRIEVAL_QUERY_VARIANT_FIELDS
|
|
317
|
+
)
|
|
318
|
+
errors.extend(
|
|
319
|
+
f"unsupported_retrieval_query_variant_field:{slot}:{field}"
|
|
320
|
+
for field in unknown_fields
|
|
321
|
+
)
|
|
322
|
+
variant_id = _variant_id(
|
|
323
|
+
raw_variant.get("variant_id"),
|
|
324
|
+
fallback=f"variant_{index}",
|
|
325
|
+
)
|
|
326
|
+
if variant_id in seen_ids:
|
|
327
|
+
errors.append(f"duplicate_retrieval_query_variant_id:{slot}:{variant_id}")
|
|
328
|
+
seen_ids.add(variant_id)
|
|
329
|
+
purpose = _text(raw_variant.get("purpose"), limit=240)
|
|
330
|
+
raw_terms = raw_variant.get("query_terms")
|
|
331
|
+
if not isinstance(raw_terms, Sequence) or isinstance(raw_terms, (str, bytes)):
|
|
332
|
+
errors.append(f"retrieval_query_variant_terms_must_be_a_list:{slot}:{variant_id}")
|
|
333
|
+
query_terms: list[str] = []
|
|
334
|
+
else:
|
|
335
|
+
query_terms = _texts(raw_terms, limit=MAX_RETRIEVAL_QUERY_TERMS_PER_VARIANT)
|
|
336
|
+
supplied_term_count = len(
|
|
337
|
+
[item for item in raw_terms if _text(item, limit=240)]
|
|
338
|
+
)
|
|
339
|
+
if not (
|
|
340
|
+
MIN_RETRIEVAL_QUERY_TERMS_PER_VARIANT
|
|
341
|
+
<= supplied_term_count
|
|
342
|
+
<= MAX_RETRIEVAL_QUERY_TERMS_PER_VARIANT
|
|
343
|
+
):
|
|
344
|
+
errors.append(f"invalid_retrieval_query_variant_term_count:{slot}:{variant_id}")
|
|
345
|
+
|
|
346
|
+
raw_disciplines = raw_variant.get("preferred_disciplines", [])
|
|
347
|
+
if isinstance(raw_disciplines, (str, bytes)):
|
|
348
|
+
# This is an optional precision hint. A scalar model output must not
|
|
349
|
+
# invalidate an otherwise usable SH or suppress its broad lane.
|
|
350
|
+
raw_disciplines = [raw_disciplines]
|
|
351
|
+
warnings.append(
|
|
352
|
+
f"coerced_retrieval_query_variant_discipline_to_list:{slot}:{variant_id}"
|
|
353
|
+
)
|
|
354
|
+
elif not isinstance(raw_disciplines, Sequence):
|
|
355
|
+
raw_disciplines = []
|
|
356
|
+
warnings.append(
|
|
357
|
+
f"dropped_malformed_retrieval_query_variant_disciplines:{slot}:{variant_id}"
|
|
358
|
+
)
|
|
359
|
+
preferred_disciplines: list[str] = []
|
|
360
|
+
for discipline in _texts(raw_disciplines, limit=3):
|
|
361
|
+
canonical = canonicalize_discipline_key(discipline)
|
|
362
|
+
if not canonical:
|
|
363
|
+
# preferred_disciplines only narrows an optional precision lane.
|
|
364
|
+
# Keep discovery viable by dropping an unrecognised suggestion;
|
|
365
|
+
# the unfiltered broad lane is still generated for this variant.
|
|
366
|
+
warnings.append(
|
|
367
|
+
f"dropped_unsupported_retrieval_query_variant_discipline:{slot}:{discipline}"
|
|
368
|
+
)
|
|
369
|
+
continue
|
|
370
|
+
if canonical not in preferred_disciplines:
|
|
371
|
+
preferred_disciplines.append(canonical)
|
|
372
|
+
|
|
373
|
+
if not purpose:
|
|
374
|
+
errors.append(f"missing_retrieval_query_variant_purpose:{slot}:{variant_id}")
|
|
375
|
+
if not query_terms:
|
|
376
|
+
errors.append(f"missing_retrieval_query_variant_terms:{slot}:{variant_id}")
|
|
377
|
+
variants.append(
|
|
378
|
+
{
|
|
379
|
+
"variant_id": variant_id,
|
|
380
|
+
"purpose": purpose,
|
|
381
|
+
"query_terms": query_terms,
|
|
382
|
+
"preferred_disciplines": preferred_disciplines,
|
|
383
|
+
}
|
|
384
|
+
)
|
|
385
|
+
return variants
|
|
386
|
+
|
|
387
|
+
|
|
388
|
+
def _normalized_research_role(
|
|
389
|
+
value: Any,
|
|
390
|
+
*,
|
|
391
|
+
question_kind: str,
|
|
392
|
+
warnings: list[str],
|
|
393
|
+
) -> str:
|
|
394
|
+
"""Return a supported reporting role without making LLM wording a hard gate."""
|
|
395
|
+
|
|
396
|
+
supplied = _text(value, limit=80).upper()
|
|
397
|
+
normalized = re.sub(r"[^A-Z0-9]+", "_", supplied).strip("_")
|
|
398
|
+
resolved = _RESEARCH_ROLE_ALIASES.get(normalized, normalized)
|
|
399
|
+
if resolved in SUPPORTED_RESEARCH_ROLES:
|
|
400
|
+
if supplied and resolved != supplied:
|
|
401
|
+
warnings.append(f"normalized_research_role:{supplied}:{resolved}")
|
|
402
|
+
return resolved
|
|
403
|
+
|
|
404
|
+
fallback = _RESEARCH_ROLE_FALLBACKS.get(question_kind, "PRIMARY_QUESTION")
|
|
405
|
+
warnings.append(
|
|
406
|
+
f"fallback_research_role:{supplied or '<missing>'}:{fallback}"
|
|
407
|
+
)
|
|
408
|
+
return fallback
|
|
409
|
+
|
|
410
|
+
|
|
411
|
+
def _scope(value: Any) -> tuple[dict[str, list[str]], list[str]]:
|
|
412
|
+
raw = _mapping(value)
|
|
413
|
+
unknown = sorted(key for key in raw if key not in SCIENTIFIC_SCOPE_KEYS)
|
|
414
|
+
return (
|
|
415
|
+
{key: _texts(raw.get(key), limit=8) for key in SCIENTIFIC_SCOPE_KEYS if _texts(raw.get(key), limit=8)},
|
|
416
|
+
unknown,
|
|
417
|
+
)
|
|
418
|
+
|
|
419
|
+
|
|
420
|
+
def _evidence_scope(value: Any) -> dict[str, Any]:
|
|
421
|
+
raw = _mapping(value)
|
|
422
|
+
result: dict[str, Any] = {}
|
|
423
|
+
for key in (
|
|
424
|
+
"date_range",
|
|
425
|
+
"languages",
|
|
426
|
+
"publication_types",
|
|
427
|
+
"providers",
|
|
428
|
+
"source_types",
|
|
429
|
+
"study_designs",
|
|
430
|
+
"contexts",
|
|
431
|
+
"notes",
|
|
432
|
+
):
|
|
433
|
+
item = raw.get(key)
|
|
434
|
+
if isinstance(item, Sequence) and not isinstance(item, (str, bytes)):
|
|
435
|
+
values = _texts(item, limit=8)
|
|
436
|
+
if values:
|
|
437
|
+
result[key] = values
|
|
438
|
+
elif _text(item, limit=240):
|
|
439
|
+
result[key] = _text(item, limit=240)
|
|
440
|
+
return result
|
|
441
|
+
|
|
442
|
+
|
|
443
|
+
def _question_errors(question: str) -> list[str]:
|
|
444
|
+
normalized = re.sub(r"[^a-z0-9\u4e00-\u9fff]+", " ", question.casefold()).strip()
|
|
445
|
+
if not normalized:
|
|
446
|
+
return ["missing_question"]
|
|
447
|
+
if len(normalized) < 12:
|
|
448
|
+
return ["question_not_independently_answerable"]
|
|
449
|
+
return []
|
|
450
|
+
|
|
451
|
+
|
|
452
|
+
def normalize_science_subhypothesis_v2(
|
|
453
|
+
value: Any,
|
|
454
|
+
*,
|
|
455
|
+
design_inventory: Mapping[str, Any] | None,
|
|
456
|
+
project_context: Mapping[str, Any] | None = None,
|
|
457
|
+
) -> dict[str, Any]:
|
|
458
|
+
"""Validate and normalize only the v2 SH contract; no legacy conversion."""
|
|
459
|
+
|
|
460
|
+
raw = _mapping(value)
|
|
461
|
+
errors: list[str] = []
|
|
462
|
+
warnings: list[str] = []
|
|
463
|
+
if not isinstance(value, Mapping):
|
|
464
|
+
errors.append("subhypothesis_must_be_an_object")
|
|
465
|
+
unknown_fields = sorted(key for key in raw if key not in _ALLOWED_FIELDS)
|
|
466
|
+
errors.extend(f"unsupported_field:{field}" for field in unknown_fields)
|
|
467
|
+
if raw.get("schema_version") != SCIENCE_SUBHYPOTHESIS_SCHEMA_VERSION:
|
|
468
|
+
errors.append("invalid_schema_version")
|
|
469
|
+
|
|
470
|
+
identifier = _text(raw.get("sub_hypothesis_id"), limit=120)
|
|
471
|
+
if not identifier:
|
|
472
|
+
errors.append("missing_sub_hypothesis_id")
|
|
473
|
+
question = _text(raw.get("question"), limit=1800)
|
|
474
|
+
errors.extend(_question_errors(question))
|
|
475
|
+
title = _text(raw.get("title"), limit=180)
|
|
476
|
+
|
|
477
|
+
question_kind = _text(raw.get("question_kind"), limit=80).upper()
|
|
478
|
+
if question_kind not in SUPPORTED_QUESTION_KINDS:
|
|
479
|
+
errors.append("unsupported_question_kind")
|
|
480
|
+
specification = QUESTION_KIND_SPECS.get(question_kind, {})
|
|
481
|
+
|
|
482
|
+
scientific_scope, unknown_scope_fields = _scope(raw.get("scientific_scope"))
|
|
483
|
+
errors.extend(f"unsupported_scope_field:{field}" for field in unknown_scope_fields)
|
|
484
|
+
if not isinstance(raw.get("scientific_scope"), Mapping):
|
|
485
|
+
errors.append("scientific_scope_must_be_an_object")
|
|
486
|
+
for field in specification.get("required_scope", ()):
|
|
487
|
+
if not scientific_scope.get(field):
|
|
488
|
+
errors.append(f"missing_required_scope:{field}")
|
|
489
|
+
|
|
490
|
+
raw_required_slots = raw.get("required_slots")
|
|
491
|
+
required_slot_values = (
|
|
492
|
+
[_text(item, limit=240) for item in raw_required_slots]
|
|
493
|
+
if isinstance(raw_required_slots, Sequence) and not isinstance(raw_required_slots, (str, bytes))
|
|
494
|
+
else []
|
|
495
|
+
)
|
|
496
|
+
required_slots = _texts(required_slot_values, limit=16)
|
|
497
|
+
if not isinstance(raw_required_slots, Sequence) or isinstance(raw_required_slots, (str, bytes)):
|
|
498
|
+
errors.append("required_slots_must_be_a_list")
|
|
499
|
+
nonempty_raw_slots = [item for item in required_slot_values if item]
|
|
500
|
+
if len(nonempty_raw_slots) != len({item.casefold() for item in nonempty_raw_slots}):
|
|
501
|
+
errors.append("duplicate_required_slot")
|
|
502
|
+
for slot in specification.get("required_slots", ()):
|
|
503
|
+
if slot not in required_slots:
|
|
504
|
+
errors.append(f"missing_required_slot:{slot}")
|
|
505
|
+
|
|
506
|
+
raw_definitions = _mapping(raw.get("slot_definitions"))
|
|
507
|
+
if not isinstance(raw.get("slot_definitions"), Mapping):
|
|
508
|
+
errors.append("slot_definitions_must_be_an_object")
|
|
509
|
+
slot_definitions: dict[str, dict[str, Any]] = {}
|
|
510
|
+
for slot in required_slots:
|
|
511
|
+
definition = _mapping(raw_definitions.get(slot))
|
|
512
|
+
if not definition:
|
|
513
|
+
errors.append(f"missing_slot_definition:{slot}")
|
|
514
|
+
continue
|
|
515
|
+
unknown_definition_fields = sorted(
|
|
516
|
+
key for key in definition if key not in _SLOT_DEFINITION_FIELDS
|
|
517
|
+
)
|
|
518
|
+
errors.extend(
|
|
519
|
+
f"unsupported_slot_definition_field:{slot}:{field}"
|
|
520
|
+
for field in unknown_definition_fields
|
|
521
|
+
)
|
|
522
|
+
normalized_definition = {
|
|
523
|
+
"meaning": _text(definition.get("meaning"), limit=700),
|
|
524
|
+
"retrieval_concepts": _texts(definition.get("retrieval_concepts"), limit=10),
|
|
525
|
+
"retrieval_query_variants": _retrieval_query_variants(
|
|
526
|
+
definition.get("retrieval_query_variants"),
|
|
527
|
+
slot=slot,
|
|
528
|
+
errors=errors,
|
|
529
|
+
warnings=warnings,
|
|
530
|
+
),
|
|
531
|
+
"minimum_evidence": _text(definition.get("minimum_evidence"), limit=700),
|
|
532
|
+
"admission_rule": _text(definition.get("admission_rule"), limit=700),
|
|
533
|
+
}
|
|
534
|
+
for field in ("meaning", "retrieval_concepts", "minimum_evidence", "admission_rule"):
|
|
535
|
+
item = normalized_definition[field]
|
|
536
|
+
if not item:
|
|
537
|
+
errors.append(f"missing_slot_definition_value:{slot}:{field}")
|
|
538
|
+
slot_definitions[slot] = normalized_definition
|
|
539
|
+
for extra_slot in sorted(key for key in raw_definitions if key not in required_slots):
|
|
540
|
+
errors.append(f"unexpected_slot_definition:{extra_slot}")
|
|
541
|
+
|
|
542
|
+
research_role = _normalized_research_role(
|
|
543
|
+
raw.get("research_role"),
|
|
544
|
+
question_kind=question_kind,
|
|
545
|
+
warnings=warnings,
|
|
546
|
+
)
|
|
547
|
+
challenge_target = _text(raw.get("challenge_target"), limit=1200)
|
|
548
|
+
if not challenge_target:
|
|
549
|
+
errors.append("missing_challenge_target")
|
|
550
|
+
|
|
551
|
+
raw_design_basis_ids = raw.get("design_basis_ids")
|
|
552
|
+
raw_basis_id_values = (
|
|
553
|
+
[_text(item, limit=80) for item in raw_design_basis_ids]
|
|
554
|
+
if isinstance(raw_design_basis_ids, Sequence) and not isinstance(raw_design_basis_ids, (str, bytes))
|
|
555
|
+
else []
|
|
556
|
+
)
|
|
557
|
+
design_basis_ids = _texts(raw_basis_id_values, limit=10)
|
|
558
|
+
if not isinstance(raw_design_basis_ids, Sequence) or isinstance(raw_design_basis_ids, (str, bytes)):
|
|
559
|
+
errors.append("design_basis_ids_must_be_a_list")
|
|
560
|
+
nonempty_raw_basis_ids = [item for item in raw_basis_id_values if item]
|
|
561
|
+
if len(nonempty_raw_basis_ids) != len({item.casefold() for item in nonempty_raw_basis_ids}):
|
|
562
|
+
errors.append("duplicate_design_basis_id")
|
|
563
|
+
if not design_basis_ids:
|
|
564
|
+
errors.append("missing_design_basis_ids")
|
|
565
|
+
inventory_ids: set[str] = set()
|
|
566
|
+
try:
|
|
567
|
+
inventory = validate_research_design_inventory(
|
|
568
|
+
design_inventory,
|
|
569
|
+
project_context=project_context,
|
|
570
|
+
)
|
|
571
|
+
inventory_ids = {
|
|
572
|
+
_text(item.get("id"), limit=80)
|
|
573
|
+
for item in inventory.get("design_basis", [])
|
|
574
|
+
if isinstance(item, Mapping)
|
|
575
|
+
}
|
|
576
|
+
except ValueError as exc:
|
|
577
|
+
errors.append(f"invalid_design_inventory:{str(exc)}")
|
|
578
|
+
inventory = {}
|
|
579
|
+
unknown_basis_ids = [identifier for identifier in design_basis_ids if identifier not in inventory_ids]
|
|
580
|
+
errors.extend(f"unknown_design_basis_id:{identifier}" for identifier in unknown_basis_ids)
|
|
581
|
+
|
|
582
|
+
return {
|
|
583
|
+
"schema_version": SCIENCE_SUBHYPOTHESIS_SCHEMA_VERSION,
|
|
584
|
+
"sub_hypothesis_id": identifier,
|
|
585
|
+
"title": title,
|
|
586
|
+
"question": question,
|
|
587
|
+
"question_kind": question_kind,
|
|
588
|
+
"scientific_scope": scientific_scope,
|
|
589
|
+
"required_slots": required_slots,
|
|
590
|
+
"slot_definitions": slot_definitions,
|
|
591
|
+
"research_role": research_role,
|
|
592
|
+
"challenge_target": challenge_target,
|
|
593
|
+
"design_basis_ids": design_basis_ids,
|
|
594
|
+
"allowed_evidence_scope": _evidence_scope(raw.get("allowed_evidence_scope")),
|
|
595
|
+
"excluded_evidence_scope": _evidence_scope(raw.get("excluded_evidence_scope")),
|
|
596
|
+
"exclusion_terms": _texts(raw.get("exclusion_terms"), limit=10),
|
|
597
|
+
"validation": {
|
|
598
|
+
"valid": not errors,
|
|
599
|
+
"errors": errors,
|
|
600
|
+
"warnings": warnings,
|
|
601
|
+
"unknown_fields": unknown_fields,
|
|
602
|
+
"inventory_schema_version": _text(
|
|
603
|
+
_mapping(design_inventory).get("schema_version"), limit=80
|
|
604
|
+
),
|
|
605
|
+
"required_inventory_schema_version": RESEARCH_DESIGN_INVENTORY_SCHEMA_VERSION,
|
|
606
|
+
},
|
|
607
|
+
}
|
|
608
|
+
|
|
609
|
+
|
|
610
|
+
def science_subhypothesis_v2_prompt_contract() -> dict[str, Any]:
|
|
611
|
+
"""Return the literal shape emitted by automatic SH decomposition prompts."""
|
|
612
|
+
|
|
613
|
+
return {
|
|
614
|
+
"schema_version": SCIENCE_SUBHYPOTHESIS_SCHEMA_VERSION,
|
|
615
|
+
"sub_hypothesis_id": "SH1",
|
|
616
|
+
"title": "short evidence-focused title",
|
|
617
|
+
"question": "an independently answerable scientific evidence question",
|
|
618
|
+
"question_kind": "one supported question kind",
|
|
619
|
+
"scientific_scope": {"research_object": ["source-grounded scope value"]},
|
|
620
|
+
"required_slots": ["all slots required by question_kind"],
|
|
621
|
+
"slot_definitions": {
|
|
622
|
+
"one_required_slot": {
|
|
623
|
+
"meaning": "what the slot denotes for this question",
|
|
624
|
+
"retrieval_concepts": ["concise searchable terms"],
|
|
625
|
+
"retrieval_query_variants": [
|
|
626
|
+
{
|
|
627
|
+
"variant_id": "baseline_observation",
|
|
628
|
+
"purpose": "broad candidate recall for this slot",
|
|
629
|
+
"query_terms": [
|
|
630
|
+
"canonical system phrase",
|
|
631
|
+
"canonical outcome phrase",
|
|
632
|
+
],
|
|
633
|
+
"preferred_disciplines": ["materials_science"],
|
|
634
|
+
}
|
|
635
|
+
],
|
|
636
|
+
"minimum_evidence": "minimum evidence needed for this slot",
|
|
637
|
+
"admission_rule": "what makes a retrieved work admissible",
|
|
638
|
+
}
|
|
639
|
+
},
|
|
640
|
+
"research_role": "one supported role",
|
|
641
|
+
"challenge_target": "the claim, assumption, or relation this question can challenge",
|
|
642
|
+
"design_basis_ids": ["DB1"],
|
|
643
|
+
"allowed_evidence_scope": {},
|
|
644
|
+
"excluded_evidence_scope": {},
|
|
645
|
+
"exclusion_terms": [],
|
|
646
|
+
}
|