qwen-sci 0.2.2__py3-none-any.whl

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Files changed (549) hide show
  1. qwen_sci-0.2.2.dist-info/METADATA +492 -0
  2. qwen_sci-0.2.2.dist-info/RECORD +549 -0
  3. qwen_sci-0.2.2.dist-info/WHEEL +4 -0
  4. qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
  5. qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
  6. src/1.txt +1 -0
  7. src/__init__.py +1 -0
  8. src/__main__.py +5 -0
  9. src/agents/__init__.py +1 -0
  10. src/agents/experiment_design_agent/__init__.py +268 -0
  11. src/agents/experiment_design_agent/artifacts.py +747 -0
  12. src/agents/experiment_design_agent/cache.py +319 -0
  13. src/agents/experiment_design_agent/completeness.py +130 -0
  14. src/agents/experiment_design_agent/contracts.py +771 -0
  15. src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
  16. src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
  17. src/agents/experiment_design_agent/discipline_catalog.py +178 -0
  18. src/agents/experiment_design_agent/evidence_cards.py +338 -0
  19. src/agents/experiment_design_agent/evidence_planner.py +452 -0
  20. src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
  21. src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
  22. src/agents/experiment_design_agent/idea_adapter.py +100 -0
  23. src/agents/experiment_design_agent/idea_intake.py +87 -0
  24. src/agents/experiment_design_agent/llm_json.py +328 -0
  25. src/agents/experiment_design_agent/orchestrator.py +1220 -0
  26. src/agents/experiment_design_agent/reasoning_context.py +183 -0
  27. src/agents/experiment_design_agent/reasoning_validation.py +546 -0
  28. src/agents/experiment_design_agent/run.py +481 -0
  29. src/agents/experiment_design_agent/run_logging.py +292 -0
  30. src/agents/experiment_design_agent/scope_gate.py +198 -0
  31. src/agents/experiment_design_agent/study_type_composer.py +1360 -0
  32. src/agents/experiment_design_agent/survey_evidence.py +1381 -0
  33. src/agents/experiment_design_agent/template_router.py +195 -0
  34. src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
  35. src/agents/idea_agent/__init__.py +1 -0
  36. src/agents/idea_agent/agent/__init__.py +6 -0
  37. src/agents/idea_agent/agent/artifacts.py +308 -0
  38. src/agents/idea_agent/agent/base.py +122 -0
  39. src/agents/idea_agent/agent/ligagent.py +488 -0
  40. src/agents/idea_agent/agent/mcts.py +2060 -0
  41. src/agents/idea_agent/agent/prompts/__init__.py +48 -0
  42. src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
  43. src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
  44. src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
  45. src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
  46. src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
  47. src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
  48. src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
  49. src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
  50. src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
  51. src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
  52. src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
  53. src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
  54. src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
  55. src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
  56. src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
  57. src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
  58. src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
  59. src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
  60. src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
  61. src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
  62. src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
  63. src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
  64. src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
  65. src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
  66. src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
  67. src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
  68. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
  69. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
  70. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
  71. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
  72. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
  73. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
  74. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
  75. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
  76. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
  77. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
  78. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
  79. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
  80. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
  81. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
  82. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
  83. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
  84. src/agents/idea_agent/example/idea_result.json +900 -0
  85. src/agents/idea_agent/run.py +276 -0
  86. src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
  87. src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
  88. src/agents/idea_agent/tests/test_idea_debate.py +480 -0
  89. src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
  90. src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
  91. src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
  92. src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
  93. src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
  94. src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
  95. src/agents/idea_agent/tests/test_result_persistence.py +183 -0
  96. src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
  97. src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
  98. src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
  99. src/agents/idea_agent/utils/core/__init__.py +1 -0
  100. src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
  101. src/agents/idea_agent/utils/core/chat_errors.py +95 -0
  102. src/agents/idea_agent/utils/core/chat_router.py +130 -0
  103. src/agents/idea_agent/utils/core/chat_transport.py +188 -0
  104. src/agents/idea_agent/utils/core/config_loader.py +166 -0
  105. src/agents/idea_agent/utils/core/json_utils.py +28 -0
  106. src/agents/idea_agent/utils/core/logger.py +287 -0
  107. src/agents/idea_agent/utils/core/progress.py +58 -0
  108. src/agents/idea_agent/utils/core/response_parsing.py +57 -0
  109. src/agents/idea_agent/utils/core/run_inputs.py +198 -0
  110. src/agents/idea_agent/utils/mcts/__init__.py +1 -0
  111. src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
  112. src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
  113. src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
  114. src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
  115. src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
  116. src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
  117. src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
  118. src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
  119. src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
  120. src/agents/idea_agent/utils/papers/__init__.py +1 -0
  121. src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
  122. src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
  123. src/agents/idea_agent/utils/prompting/__init__.py +1 -0
  124. src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
  125. src/agents/idea_agent/utils/workflow/__init__.py +1 -0
  126. src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
  127. src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
  128. src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
  129. src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
  130. src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
  131. src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
  132. src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
  133. src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
  134. src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
  135. src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
  136. src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
  137. src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
  138. src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
  139. src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
  140. src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
  141. src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
  142. src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
  143. src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
  144. src/agents/research_plan_author/__init__.py +50 -0
  145. src/agents/research_plan_author/artifacts.py +270 -0
  146. src/agents/research_plan_author/authoring_blueprint.py +1246 -0
  147. src/agents/research_plan_author/bibtex_renderer.py +252 -0
  148. src/agents/research_plan_author/contract_repair.py +131 -0
  149. src/agents/research_plan_author/contracts.py +745 -0
  150. src/agents/research_plan_author/cross_section_editor.py +232 -0
  151. src/agents/research_plan_author/document_quality.py +987 -0
  152. src/agents/research_plan_author/idea_evolution.py +223 -0
  153. src/agents/research_plan_author/input_loader.py +76 -0
  154. src/agents/research_plan_author/latex_compiler.py +260 -0
  155. src/agents/research_plan_author/latex_safety.py +159 -0
  156. src/agents/research_plan_author/llm_json.py +74 -0
  157. src/agents/research_plan_author/markdown_renderer.py +275 -0
  158. src/agents/research_plan_author/pdf_validator.py +149 -0
  159. src/agents/research_plan_author/render.py +166 -0
  160. src/agents/research_plan_author/render_artifacts.py +187 -0
  161. src/agents/research_plan_author/run.py +765 -0
  162. src/agents/research_plan_author/run_logging.py +209 -0
  163. src/agents/research_plan_author/section_cache.py +184 -0
  164. src/agents/research_plan_author/section_composer.py +1764 -0
  165. src/agents/research_plan_author/section_router.py +209 -0
  166. src/agents/research_plan_author/semantic_validator.py +254 -0
  167. src/agents/research_plan_author/source_bundle.py +46 -0
  168. src/agents/research_plan_author/source_registry.py +208 -0
  169. src/agents/research_plan_author/survey_source_loader.py +137 -0
  170. src/agents/research_plan_author/template_adapter.py +173 -0
  171. src/agents/research_plan_author/template_profile.py +204 -0
  172. src/agents/research_plan_author/tex_renderer.py +496 -0
  173. src/agents/research_plan_author/theory_presentation.py +134 -0
  174. src/agents/research_plan_author/theory_spine.py +703 -0
  175. src/agents/survey_agent/Dockerfile +54 -0
  176. src/agents/survey_agent/README.md +350 -0
  177. src/agents/survey_agent/config/deep_survey.yaml +217 -0
  178. src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
  179. src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
  180. src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
  181. src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
  182. src/agents/survey_agent/env_report.md +348 -0
  183. src/agents/survey_agent/modules/__init__.py +0 -0
  184. src/agents/survey_agent/modules/code_collector.py +2194 -0
  185. src/agents/survey_agent/modules/code_report_generator.py +1282 -0
  186. src/agents/survey_agent/modules/data_manager.py +1713 -0
  187. src/agents/survey_agent/modules/database.py +167 -0
  188. src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
  189. src/agents/survey_agent/modules/fulltext_http.py +134 -0
  190. src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
  191. src/agents/survey_agent/modules/judge.py +434 -0
  192. src/agents/survey_agent/modules/outcome_RAG.py +236 -0
  193. src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
  194. src/agents/survey_agent/modules/pe.py +1729 -0
  195. src/agents/survey_agent/modules/pseudo_creator.py +782 -0
  196. src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
  197. src/agents/survey_agent/modules/refine_agent.py +1952 -0
  198. src/agents/survey_agent/modules/survey_generator.py +5691 -0
  199. src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
  200. src/agents/survey_agent/modules/visual_prompts.py +327 -0
  201. src/agents/survey_agent/modules/work_analyzer.py +2750 -0
  202. src/agents/survey_agent/modules/work_collector.py +5649 -0
  203. src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
  204. src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
  205. src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
  206. src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
  207. src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
  208. src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
  209. src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
  210. src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
  211. src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
  212. src/agents/survey_agent/utils/__init__.py +0 -0
  213. src/agents/survey_agent/utils/ablation_utils.py +317 -0
  214. src/agents/survey_agent/utils/api_call.py +2518 -0
  215. src/agents/survey_agent/utils/chat_utils.py +82 -0
  216. src/agents/survey_agent/utils/config_utils.py +70 -0
  217. src/agents/survey_agent/utils/convert_to_md.py +29 -0
  218. src/agents/survey_agent/utils/err_info.py +24 -0
  219. src/agents/survey_agent/utils/file_utils.py +176 -0
  220. src/agents/survey_agent/utils/gpu_utils.py +145 -0
  221. src/agents/survey_agent/utils/graph_visualizer.py +279 -0
  222. src/agents/survey_agent/utils/html_utils.py +181 -0
  223. src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
  224. src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
  225. src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
  226. src/agents/survey_agent/utils/mineru_utils.py +396 -0
  227. src/agents/survey_agent/utils/paper.py +144 -0
  228. src/agents/survey_agent/utils/read_yaml.py +15 -0
  229. src/agents/survey_agent/utils/repo_utils.py +167 -0
  230. src/agents/survey_agent/utils/rich_logger.py +77 -0
  231. src/agents/survey_agent/utils/step2v2.py +874 -0
  232. src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
  233. src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
  234. src/agents/survey_agent/utils/utils.py +118 -0
  235. src/agents/survey_agent/utils/work.py +2 -0
  236. src/cli.py +1611 -0
  237. src/config/__init__.py +213 -0
  238. src/config/default.yaml +1122 -0
  239. src/harness/LICENSE +21 -0
  240. src/harness/VENDORED.md +14 -0
  241. src/harness/src/__init__.py +0 -0
  242. src/harness/src/openharness/__init__.py +0 -0
  243. src/harness/src/openharness/__main__.py +6 -0
  244. src/harness/src/openharness/api/__init__.py +21 -0
  245. src/harness/src/openharness/api/client.py +281 -0
  246. src/harness/src/openharness/api/codex_client.py +407 -0
  247. src/harness/src/openharness/api/copilot_auth.py +240 -0
  248. src/harness/src/openharness/api/copilot_client.py +134 -0
  249. src/harness/src/openharness/api/errors.py +19 -0
  250. src/harness/src/openharness/api/openai_client.py +577 -0
  251. src/harness/src/openharness/api/provider.py +186 -0
  252. src/harness/src/openharness/api/registry.py +437 -0
  253. src/harness/src/openharness/api/usage.py +17 -0
  254. src/harness/src/openharness/auth/__init__.py +29 -0
  255. src/harness/src/openharness/auth/external.py +610 -0
  256. src/harness/src/openharness/auth/flows.py +189 -0
  257. src/harness/src/openharness/auth/manager.py +482 -0
  258. src/harness/src/openharness/auth/storage.py +269 -0
  259. src/harness/src/openharness/autopilot/__init__.py +23 -0
  260. src/harness/src/openharness/autopilot/service.py +2239 -0
  261. src/harness/src/openharness/autopilot/types.py +91 -0
  262. src/harness/src/openharness/bridge/__init__.py +20 -0
  263. src/harness/src/openharness/bridge/manager.py +106 -0
  264. src/harness/src/openharness/bridge/session_runner.py +46 -0
  265. src/harness/src/openharness/bridge/types.py +37 -0
  266. src/harness/src/openharness/bridge/work_secret.py +41 -0
  267. src/harness/src/openharness/channels/UPSTREAM +6 -0
  268. src/harness/src/openharness/channels/__init__.py +22 -0
  269. src/harness/src/openharness/channels/adapter.py +131 -0
  270. src/harness/src/openharness/channels/bus/__init__.py +6 -0
  271. src/harness/src/openharness/channels/bus/events.py +38 -0
  272. src/harness/src/openharness/channels/bus/queue.py +44 -0
  273. src/harness/src/openharness/channels/impl/__init__.py +6 -0
  274. src/harness/src/openharness/channels/impl/base.py +141 -0
  275. src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
  276. src/harness/src/openharness/channels/impl/discord.py +311 -0
  277. src/harness/src/openharness/channels/impl/email.py +410 -0
  278. src/harness/src/openharness/channels/impl/feishu.py +1342 -0
  279. src/harness/src/openharness/channels/impl/manager.py +257 -0
  280. src/harness/src/openharness/channels/impl/matrix.py +700 -0
  281. src/harness/src/openharness/channels/impl/mochat.py +897 -0
  282. src/harness/src/openharness/channels/impl/qq.py +141 -0
  283. src/harness/src/openharness/channels/impl/slack.py +284 -0
  284. src/harness/src/openharness/channels/impl/telegram.py +525 -0
  285. src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
  286. src/harness/src/openharness/cli.py +2551 -0
  287. src/harness/src/openharness/commands/__init__.py +21 -0
  288. src/harness/src/openharness/commands/registry.py +2783 -0
  289. src/harness/src/openharness/config/__init__.py +34 -0
  290. src/harness/src/openharness/config/paths.py +160 -0
  291. src/harness/src/openharness/config/schema.py +119 -0
  292. src/harness/src/openharness/config/settings.py +1104 -0
  293. src/harness/src/openharness/coordinator/__init__.py +12 -0
  294. src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
  295. src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
  296. src/harness/src/openharness/engine/__init__.py +80 -0
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  440. src/harness/src/openharness/tools/notebook_edit_tool.py +97 -0
  441. src/harness/src/openharness/tools/read_mcp_resource_tool.py +38 -0
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  444. src/harness/src/openharness/tools/skill_tool.py +43 -0
  445. src/harness/src/openharness/tools/sleep_tool.py +32 -0
  446. src/harness/src/openharness/tools/task_create_tool.py +56 -0
  447. src/harness/src/openharness/tools/task_get_tool.py +33 -0
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  452. src/harness/src/openharness/tools/team_create_tool.py +31 -0
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  454. src/harness/src/openharness/tools/todo_write_tool.py +46 -0
  455. src/harness/src/openharness/tools/tool_search_tool.py +38 -0
  456. src/harness/src/openharness/tools/web_fetch_tool.py +117 -0
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  460. src/harness/src/openharness/ui/backend_host.py +941 -0
  461. src/harness/src/openharness/ui/coordinator_drain.py +198 -0
  462. src/harness/src/openharness/ui/input.py +32 -0
  463. src/harness/src/openharness/ui/output.py +265 -0
  464. src/harness/src/openharness/ui/permission_dialog.py +14 -0
  465. src/harness/src/openharness/ui/protocol.py +247 -0
  466. src/harness/src/openharness/ui/react_launcher.py +179 -0
  467. src/harness/src/openharness/ui/runtime.py +799 -0
  468. src/harness/src/openharness/ui/textual_app.py +495 -0
  469. src/harness/src/openharness/utils/__init__.py +0 -0
  470. src/harness/src/openharness/utils/file_lock.py +86 -0
  471. src/harness/src/openharness/utils/fs.py +98 -0
  472. src/harness/src/openharness/utils/helpers.py +77 -0
  473. src/harness/src/openharness/utils/network_guard.py +340 -0
  474. src/harness/src/openharness/utils/shell.py +147 -0
  475. src/harness/src/openharness/vim/__init__.py +5 -0
  476. src/harness/src/openharness/vim/transitions.py +8 -0
  477. src/harness/src/openharness/voice/__init__.py +7 -0
  478. src/harness/src/openharness/voice/keyterms.py +10 -0
  479. src/harness/src/openharness/voice/stream_stt.py +8 -0
  480. src/harness/src/openharness/voice/voice_mode.py +44 -0
  481. src/llm/__init__.py +29 -0
  482. src/llm/image_generation.py +402 -0
  483. src/llm/provider_registry.py +419 -0
  484. src/llm/runtime_env.py +64 -0
  485. src/llm/structured_output.py +131 -0
  486. src/llm/vision.py +198 -0
  487. src/memory/__init__.py +2 -0
  488. src/memory/api/__init__.py +1 -0
  489. src/memory/api/base_memory_system_api.py +98 -0
  490. src/memory/api/base_symbolic_memory_system_api.py +190 -0
  491. src/memory/api/base_vector_memory_system_api.py +116 -0
  492. src/memory/api/faiss_memory_system_api.py +228 -0
  493. src/memory/api/slot_process_api.py +827 -0
  494. src/memory/api/symbolic_memory_system_api.py +572 -0
  495. src/memory/memory_system/__init__.py +48 -0
  496. src/memory/memory_system/component_taxonomy.py +430 -0
  497. src/memory/memory_system/llm.py +437 -0
  498. src/memory/memory_system/models.py +168 -0
  499. src/memory/memory_system/user_prompt.py +418 -0
  500. src/memory/memory_system/utils.py +282 -0
  501. src/memory/memory_system/vectorstore.py +311 -0
  502. src/memory/memory_system/working_slot.py +99 -0
  503. src/pipeline/__init__.py +129 -0
  504. src/pipeline/contracts.py +531 -0
  505. src/pipeline/discipline_taxonomy.py +916 -0
  506. src/pipeline/evidence_coverage_ledger.py +1150 -0
  507. src/pipeline/evidence_refinement.py +620 -0
  508. src/pipeline/experiment_to_symbolic.py +137 -0
  509. src/pipeline/multimodal_evidence/__init__.py +28 -0
  510. src/pipeline/multimodal_evidence/capabilities.py +107 -0
  511. src/pipeline/multimodal_evidence/claims.py +135 -0
  512. src/pipeline/multimodal_evidence/contract.py +291 -0
  513. src/pipeline/multimodal_evidence/data_sh_compiler.py +505 -0
  514. src/pipeline/multimodal_evidence/handoff_binding.py +135 -0
  515. src/pipeline/multimodal_evidence/manifest.py +254 -0
  516. src/pipeline/multimodal_evidence/native_analysis.py +479 -0
  517. src/pipeline/multimodal_evidence/perception.py +277 -0
  518. src/pipeline/multimodal_evidence/query_binding.py +65 -0
  519. src/pipeline/multimodal_evidence/rendering.py +120 -0
  520. src/pipeline/multimodal_evidence/safety.py +42 -0
  521. src/pipeline/multimodal_evidence/sampling.py +69 -0
  522. src/pipeline/multimodal_evidence/service.py +148 -0
  523. src/pipeline/multimodal_evidence/survey_integration.py +460 -0
  524. src/pipeline/paper_identity.py +52 -0
  525. src/pipeline/research_design_inventory.py +338 -0
  526. src/pipeline/research_domain_resolution.py +669 -0
  527. src/pipeline/research_identity.py +548 -0
  528. src/pipeline/research_question_contract.py +646 -0
  529. src/pipeline/retrieval_lanes.py +889 -0
  530. src/pipeline/run_loop.py +862 -0
  531. src/pipeline/science_events.py +30 -0
  532. src/pipeline/science_manifests.py +602 -0
  533. src/pipeline/science_run.py +918 -0
  534. src/pipeline/science_stages.py +709 -0
  535. src/pipeline/science_workflow.py +807 -0
  536. src/pipeline/sh_cluster_projection.py +306 -0
  537. src/pipeline/sh_graph_provenance.py +648 -0
  538. src/pipeline/subhypothesis_decomposition.py +392 -0
  539. src/pipeline/subhypothesis_evidence.py +856 -0
  540. src/pipeline/survey_evidence_plan.py +858 -0
  541. src/pipeline/survey_gap_adjudication.py +647 -0
  542. src/pipeline/survey_gap_candidates.py +840 -0
  543. src/pipeline/survey_gap_ledger.py +683 -0
  544. src/pipeline/survey_gap_triage.py +401 -0
  545. src/pipeline/survey_handoff_persistence.py +481 -0
  546. src/pipeline/survey_handoff_projection.py +457 -0
  547. src/pipeline/survey_idea_handoff.py +1112 -0
  548. src/pipeline/survey_idea_loader.py +289 -0
  549. src/research_run_ids.py +11 -0
@@ -0,0 +1,95 @@
1
+ from __future__ import annotations
2
+
3
+ import json
4
+ from typing import Any, Mapping
5
+
6
+
7
+ def _stringify(value: Any) -> str:
8
+ return str(value or "").strip()
9
+
10
+
11
+ def _pick_header(headers: Any, key: str) -> str:
12
+ if not isinstance(headers, Mapping):
13
+ return ""
14
+ return _stringify(headers.get(key) or headers.get(key.title()))
15
+
16
+
17
+ def format_chat_retry_error(exc: Exception) -> str:
18
+ body = getattr(exc, "body", None)
19
+ error = body.get("error") if isinstance(body, Mapping) else None
20
+ response = getattr(exc, "response", None)
21
+ headers = getattr(response, "headers", None)
22
+
23
+ status_code = getattr(exc, "status_code", None)
24
+ error_type = _stringify(
25
+ (error.get("type") if isinstance(error, Mapping) else None) or getattr(exc, "type", None)
26
+ )
27
+ error_code = _stringify(
28
+ (error.get("code") if isinstance(error, Mapping) else None) or getattr(exc, "code", None)
29
+ )
30
+ error_param = _stringify(
31
+ (error.get("param") if isinstance(error, Mapping) else None) or getattr(exc, "param", None)
32
+ )
33
+ request_id = _stringify(
34
+ getattr(exc, "request_id", None)
35
+ or (error.get("request_id") if isinstance(error, Mapping) else None)
36
+ or (body.get("request_id") if isinstance(body, Mapping) else None)
37
+ or _pick_header(headers, "x-request-id")
38
+ or _pick_header(headers, "request-id")
39
+ )
40
+ message = _stringify(
41
+ (error.get("message") if isinstance(error, Mapping) else None)
42
+ or (body.get("message") if isinstance(body, Mapping) else None)
43
+ or exc
44
+ )
45
+
46
+ parts = [exc.__class__.__name__]
47
+ if status_code is not None:
48
+ parts.append(f"status={status_code}")
49
+ if error_type:
50
+ parts.append(f"type={error_type}")
51
+ if error_code:
52
+ parts.append(f"code={error_code}")
53
+ if error_param:
54
+ parts.append(f"param={error_param}")
55
+ if request_id:
56
+ parts.append(f"request_id={request_id}")
57
+ if message:
58
+ parts.append(f"message={message}")
59
+ if isinstance(body, Mapping):
60
+ parts.append(f"body={json.dumps(body, ensure_ascii=True, sort_keys=True)}")
61
+
62
+ retry_after = _pick_header(headers, "retry-after")
63
+ server = _pick_header(headers, "server")
64
+ if retry_after:
65
+ parts.append(f"retry_after={retry_after}")
66
+ if server:
67
+ parts.append(f"server={server}")
68
+
69
+ return "; ".join(parts)
70
+
71
+
72
+ def is_non_retryable_chat_error(exc: Exception) -> bool:
73
+ """Return true for deterministic client/request errors such as oversized input."""
74
+
75
+ status = getattr(exc, "status_code", None)
76
+ try:
77
+ status_value = int(status) if status is not None else None
78
+ except (TypeError, ValueError):
79
+ status_value = None
80
+ if status_value is not None:
81
+ if status_value in {408, 409, 425, 429}:
82
+ return False
83
+ if 400 <= status_value < 500:
84
+ return True
85
+ detail = format_chat_retry_error(exc).casefold()
86
+ return (
87
+ "invalid_parameter_error" in detail
88
+ or "range of input length" in detail
89
+ or "context length" in detail
90
+ or "maximum context" in detail
91
+ or "chat prompt must not be empty" in detail
92
+ )
93
+
94
+
95
+ __all__ = ["format_chat_retry_error", "is_non_retryable_chat_error"]
@@ -0,0 +1,130 @@
1
+ from __future__ import annotations
2
+
3
+ from typing import Any, Dict, Mapping
4
+
5
+ from src.llm.provider_registry import resolve_model
6
+
7
+
8
+ HIGH_REASONING_STAGES = frozenset(
9
+ {
10
+ "advanced_analysis",
11
+ "algorithm_alignment",
12
+ "algorithm_structuring",
13
+ "experiment_findings_extraction",
14
+ "idea_fusion",
15
+ "mcts_expand",
16
+ "re_analysis_replan",
17
+ "scientific_materialization",
18
+ }
19
+ )
20
+
21
+
22
+ def _is_gpt5_family(model: str) -> bool:
23
+ normalized = str(model or "").strip().lower()
24
+ return normalized.startswith("gpt-5")
25
+
26
+
27
+ def _is_gemini_3_pro_family(model: str) -> bool:
28
+ normalized = str(model or "").strip().lower()
29
+ return normalized.startswith(("gemini-3-pro", "gemini-3.1-pro"))
30
+
31
+
32
+ def _is_claude_opus_4_6_family(model: str) -> bool:
33
+ normalized = str(model or "").strip().lower()
34
+ return normalized.startswith("claude-opus-4-6")
35
+
36
+
37
+ def _is_claude_sonnet_4_6_family(model: str) -> bool:
38
+ normalized = str(model or "").strip().lower()
39
+ return normalized.startswith("claude-sonnet-4-6")
40
+
41
+
42
+ def _is_deepseek_v3_2_family(model: str) -> bool:
43
+ normalized = str(model or "").strip().lower()
44
+ return normalized.startswith("deepseek-v3.2")
45
+
46
+
47
+ def _is_kimi_k2_5_family(model: str) -> bool:
48
+ normalized = str(model or "").strip().lower()
49
+ return normalized.startswith("kimi-k2.5")
50
+
51
+
52
+ def _is_glm_5_family(model: str) -> bool:
53
+ normalized = str(model or "").strip().lower()
54
+ return normalized.startswith("glm-5")
55
+
56
+
57
+ def _qwen_api_style(model: str) -> str | None:
58
+ normalized = str(model or "").strip().lower()
59
+ if normalized.startswith("qwen3-max"):
60
+ return "responses"
61
+ if normalized.startswith(("qwen3.", "qwen3-")):
62
+ return "chat_completions"
63
+ return None
64
+
65
+
66
+ def _strip_gpt_only_parameters(request_kwargs: Dict[str, Any]) -> None:
67
+ for key in ("reasoning", "reasoning_effort", "verbosity", "service_tier"):
68
+ request_kwargs.pop(key, None)
69
+
70
+
71
+ def prepare_ligagent_chat_request(
72
+ *,
73
+ model: str,
74
+ stage: str,
75
+ kwargs: Mapping[str, Any],
76
+ config: Any = None,
77
+ ) -> tuple[str, Dict[str, Any]]:
78
+ resolved_model = str(model or "").strip()
79
+ if not resolved_model:
80
+ raise ValueError("LigAgent chat requires a non-empty model name.")
81
+
82
+ request_kwargs = dict(kwargs)
83
+
84
+ qwen_style = _qwen_api_style(resolved_model)
85
+ if qwen_style is not None:
86
+ _strip_gpt_only_parameters(request_kwargs)
87
+ return resolved_model, request_kwargs
88
+
89
+ try:
90
+ model_spec = resolve_model(config, resolved_model)
91
+ except (ValueError, TypeError):
92
+ model_spec = None
93
+ if model_spec is not None:
94
+ if model_spec.provider == "qwen":
95
+ if model_spec.api_style not in {"chat_completions", "responses"}:
96
+ raise ValueError(
97
+ f"Unsupported LigAgent chat model protocol: {resolved_model} "
98
+ f"({model_spec.api_style})"
99
+ )
100
+ _strip_gpt_only_parameters(request_kwargs)
101
+ return resolved_model, request_kwargs
102
+ if model_spec.provider != "openai" and model_spec.api_style in {"chat_completions", "responses"}:
103
+ return resolved_model, request_kwargs
104
+
105
+ if _is_gpt5_family(resolved_model):
106
+ request_kwargs["temperature"] = 1.0
107
+ request_kwargs["reasoning"] = {
108
+ "effort": "high" if stage in HIGH_REASONING_STAGES else "low"
109
+ }
110
+ return resolved_model, request_kwargs
111
+
112
+ if _is_gemini_3_pro_family(resolved_model):
113
+ return resolved_model, request_kwargs
114
+
115
+ if _is_claude_opus_4_6_family(resolved_model):
116
+ return resolved_model, request_kwargs
117
+
118
+ if _is_claude_sonnet_4_6_family(resolved_model):
119
+ return resolved_model, request_kwargs
120
+
121
+ if _is_deepseek_v3_2_family(resolved_model):
122
+ return resolved_model, request_kwargs
123
+
124
+ if _is_kimi_k2_5_family(resolved_model):
125
+ return resolved_model, request_kwargs
126
+
127
+ if _is_glm_5_family(resolved_model):
128
+ return resolved_model, request_kwargs
129
+
130
+ raise ValueError(f"Unsupported LigAgent chat model: {resolved_model}")
@@ -0,0 +1,188 @@
1
+ from __future__ import annotations
2
+
3
+ from typing import Any, Dict, Mapping, Optional
4
+ from urllib.parse import urlparse
5
+
6
+ from src.llm.provider_registry import clamp_output_tokens, resolve_model
7
+
8
+ _SUPPORTED_API_STYLES = {"auto", "responses", "chat_completions"}
9
+
10
+
11
+ def normalize_api_style(api_style: Optional[str]) -> str:
12
+ style = str(api_style or "auto").strip().lower()
13
+ if style not in _SUPPORTED_API_STYLES:
14
+ supported = ", ".join(sorted(_SUPPORTED_API_STYLES))
15
+ raise ValueError(f"Unsupported OPENAI_API_STYLE '{style}'. Expected one of: {supported}.")
16
+ return style
17
+
18
+
19
+ def _model_prefers_chat_completions(model: Optional[str]) -> bool:
20
+ normalized = str(model or "").strip().lower()
21
+ return (
22
+ normalized.startswith(("gemini-3-pro", "gemini-3.1-pro"))
23
+ or normalized.startswith("claude-opus-4-6")
24
+ or normalized.startswith("claude-sonnet-4-6")
25
+ or normalized.startswith("deepseek-v3.2")
26
+ or normalized.startswith("kimi-k2.5")
27
+ or normalized.startswith("glm-5")
28
+ )
29
+
30
+
31
+ def _model_prefers_responses(model: Optional[str]) -> bool:
32
+ normalized = str(model or "").strip().lower()
33
+ return normalized.startswith(("gpt-5", "o1", "o3", "o4"))
34
+
35
+
36
+ def resolve_chat_transport(
37
+ base_url: Optional[str],
38
+ api_style: Optional[str] = "auto",
39
+ model: Optional[str] = None,
40
+ config: Any = None,
41
+ ) -> str:
42
+ style = normalize_api_style(api_style)
43
+ if style != "auto":
44
+ return style
45
+
46
+ if model:
47
+ try:
48
+ return resolve_model(config, str(model)).api_style
49
+ except (ValueError, TypeError):
50
+ pass
51
+
52
+ if _model_prefers_chat_completions(model):
53
+ return "chat_completions"
54
+ if _model_prefers_responses(model):
55
+ return "responses"
56
+
57
+ normalized = str(base_url or "").strip().rstrip("/")
58
+ if not normalized:
59
+ return "responses"
60
+
61
+ parsed = urlparse(normalized)
62
+ if "dashscope.aliyuncs.com" in (parsed.netloc or ""):
63
+ return "chat_completions"
64
+ return "responses"
65
+
66
+
67
+ def ensure_default_max_output_tokens(
68
+ kwargs: Mapping[str, Any],
69
+ default_max_output_tokens: int,
70
+ ) -> Dict[str, Any]:
71
+ normalized = dict(kwargs)
72
+ has_token_limit = any(
73
+ key in normalized
74
+ for key in ("max_output_tokens", "max_tokens", "max_completion_tokens")
75
+ )
76
+ if not has_token_limit:
77
+ normalized["max_output_tokens"] = default_max_output_tokens
78
+ return normalized
79
+
80
+
81
+ def normalize_responses_kwargs(
82
+ kwargs: Mapping[str, Any],
83
+ *,
84
+ strip_gpt_parameters: bool = False,
85
+ ) -> Dict[str, Any]:
86
+ normalized = dict(kwargs)
87
+ if "max_output_tokens" not in normalized:
88
+ if "max_completion_tokens" in normalized:
89
+ normalized["max_output_tokens"] = normalized.pop("max_completion_tokens")
90
+ elif "max_tokens" in normalized:
91
+ normalized["max_output_tokens"] = normalized.pop("max_tokens")
92
+ normalized.pop("max_completion_tokens", None)
93
+ normalized.pop("max_tokens", None)
94
+ if strip_gpt_parameters:
95
+ normalized.pop("reasoning", None)
96
+ normalized.pop("reasoning_effort", None)
97
+ normalized.pop("verbosity", None)
98
+ normalized.pop("service_tier", None)
99
+ return normalized
100
+
101
+
102
+ def normalize_chat_completions_kwargs(
103
+ kwargs: Mapping[str, Any],
104
+ *,
105
+ strip_reasoning: bool = True,
106
+ ) -> Dict[str, Any]:
107
+ normalized = dict(kwargs)
108
+ if strip_reasoning:
109
+ normalized.pop("reasoning", None)
110
+ normalized.pop("reasoning_effort", None)
111
+ normalized.pop("verbosity", None)
112
+ normalized.pop("service_tier", None)
113
+ if "max_tokens" not in normalized and "max_completion_tokens" in normalized:
114
+ normalized["max_tokens"] = normalized.pop("max_completion_tokens")
115
+ else:
116
+ normalized.pop("max_completion_tokens", None)
117
+ if "max_tokens" not in normalized and "max_completion_tokens" not in normalized:
118
+ max_output_tokens = normalized.pop("max_output_tokens", None)
119
+ if max_output_tokens is not None:
120
+ normalized["max_tokens"] = max_output_tokens
121
+ else:
122
+ normalized.pop("max_output_tokens", None)
123
+ return normalized
124
+
125
+
126
+ def clamp_chat_output_tokens(
127
+ config: Any,
128
+ model: str,
129
+ kwargs: Mapping[str, Any],
130
+ ) -> Dict[str, Any]:
131
+ normalized = dict(kwargs)
132
+ token_keys = ("max_output_tokens", "max_tokens", "max_completion_tokens")
133
+ for key in token_keys:
134
+ if key in normalized:
135
+ normalized[key] = clamp_output_tokens(config, model, normalized[key])
136
+ break
137
+ return normalized
138
+
139
+
140
+ def extract_text_content(content: Any) -> str:
141
+ if isinstance(content, str):
142
+ return content.strip()
143
+ if not isinstance(content, list):
144
+ return ""
145
+
146
+ fragments = []
147
+ for part in content:
148
+ if isinstance(part, str):
149
+ if part.strip():
150
+ fragments.append(part.strip())
151
+ continue
152
+ if isinstance(part, Mapping):
153
+ part_type = str(part.get("type", "")).lower()
154
+ text = part.get("text")
155
+ if text and part_type in {"text", "output_text", "input_text"}:
156
+ fragments.append(str(text).strip())
157
+ continue
158
+ text = getattr(part, "text", None)
159
+ if text:
160
+ fragments.append(str(text).strip())
161
+
162
+ return "\n".join(fragment for fragment in fragments if fragment).strip()
163
+
164
+
165
+ def extract_response_text(response: Any) -> str:
166
+ output_text = getattr(response, "output_text", None)
167
+ if isinstance(output_text, str) and output_text.strip():
168
+ return output_text.strip()
169
+
170
+ choices = getattr(response, "choices", None)
171
+ if choices:
172
+ message = getattr(choices[0], "message", None)
173
+ content = getattr(message, "content", None)
174
+ text = extract_text_content(content)
175
+ if text:
176
+ return text
177
+
178
+ output = getattr(response, "output", None)
179
+ if isinstance(output, list):
180
+ for item in output:
181
+ content = getattr(item, "content", None)
182
+ if content is None and isinstance(item, Mapping):
183
+ content = item.get("content")
184
+ text = extract_text_content(content)
185
+ if text:
186
+ return text
187
+
188
+ raise ValueError("LLM response did not include any text content.")
@@ -0,0 +1,166 @@
1
+ """Configuration loading helpers for Idea Agent runtime defaults and overrides."""
2
+
3
+ from __future__ import annotations
4
+
5
+ import os
6
+ import re
7
+ from collections.abc import Mapping
8
+ from pathlib import Path
9
+ from typing import Any, Optional
10
+
11
+ from omegaconf import OmegaConf
12
+
13
+ DEFAULT_CONFIG_PATH = (
14
+ Path(__file__).resolve().parents[4] / "config" / "default.yaml"
15
+ )
16
+ REPO_ROOT = Path(__file__).resolve().parents[5]
17
+ _REPO_ROOT_TOKEN = "__REPO_ROOT__"
18
+ _WORKSPACE_TOKEN = "__WORKSPACE__"
19
+
20
+
21
+ def _resolve_config_path(config_path: Optional[str]) -> Path:
22
+ if config_path:
23
+ path = Path(config_path)
24
+ else:
25
+ env_path = os.getenv("IDEA_AGENT_CONFIG")
26
+ path = Path(env_path) if env_path else DEFAULT_CONFIG_PATH
27
+ return path.expanduser().resolve()
28
+
29
+
30
+ def _preprocess_yaml_content(content: str) -> str:
31
+ env_pattern = re.compile(r"\$\{env:([^}]+)\}")
32
+ content = env_pattern.sub(lambda match: os.environ.get(match.group(1), ""), content)
33
+
34
+ oc_env_pattern = re.compile(r"\$\{oc\.env:([^,}]+)(?:,([^}]*))?\}")
35
+ content = oc_env_pattern.sub(
36
+ lambda match: os.environ.get(match.group(1), match.group(2) or ""),
37
+ content,
38
+ )
39
+
40
+ content = content.replace("${repo_root}", _REPO_ROOT_TOKEN)
41
+ content = content.replace("${workspace}", _WORKSPACE_TOKEN)
42
+ return content
43
+
44
+
45
+ def _load_yaml_config(path: Path) -> Any:
46
+ raw_content = _preprocess_yaml_content(path.read_text(encoding="utf-8"))
47
+ return OmegaConf.create(raw_content)
48
+
49
+
50
+ def _recursive_apply(value: Any, transform) -> Any:
51
+ if OmegaConf.is_dict(value):
52
+ result = OmegaConf.create()
53
+ for key in value:
54
+ result[key] = _recursive_apply(value[key], transform)
55
+ return result
56
+ if OmegaConf.is_list(value):
57
+ return [_recursive_apply(item, transform) for item in value]
58
+ return transform(value)
59
+
60
+
61
+ def _resolve_custom_placeholders(config: Any) -> Any:
62
+ repo_root = str(REPO_ROOT.resolve())
63
+ workspace_root = OmegaConf.select(config, "workspace.root")
64
+ if workspace_root is None:
65
+ workspace = str((REPO_ROOT / "workspace").resolve())
66
+ else:
67
+ workspace = str(workspace_root).replace(_REPO_ROOT_TOKEN, repo_root)
68
+
69
+ def _transform(value: Any) -> Any:
70
+ if isinstance(value, str):
71
+ return value.replace(_REPO_ROOT_TOKEN, repo_root).replace(_WORKSPACE_TOKEN, workspace)
72
+ return value
73
+
74
+ return _recursive_apply(config, _transform)
75
+
76
+
77
+ def _load_defaults(defaults: list[Any], base_dir: Path) -> Any:
78
+ merged = OmegaConf.create()
79
+ for entry in defaults or []:
80
+ if isinstance(entry, str):
81
+ if entry in ("_self_", "self"):
82
+ continue
83
+ if "/" in entry:
84
+ group, name = entry.split("/", 1)
85
+ candidate = base_dir / group / f"{name}.yaml"
86
+ else:
87
+ candidate = base_dir / f"{entry}.yaml"
88
+ elif isinstance(entry, Mapping):
89
+ candidate = None
90
+ for group, name in entry.items():
91
+ if group in ("_self_", "self"):
92
+ continue
93
+ candidate = base_dir / group / f"{name}.yaml"
94
+ break
95
+ else:
96
+ candidate = None
97
+
98
+ if candidate and candidate.exists():
99
+ merged = OmegaConf.merge(merged, _load_yaml_config(candidate))
100
+ return merged
101
+
102
+
103
+ def load_project_config(config_path: Optional[str] = None) -> Any:
104
+ path = _resolve_config_path(config_path)
105
+ if not path.exists():
106
+ raise FileNotFoundError(f"Idea agent config not found at {path}")
107
+ config = _load_yaml_config(path)
108
+ defaults = config.get("defaults") if isinstance(config, dict) or hasattr(config, "get") else None
109
+ if not defaults:
110
+ return _resolve_custom_placeholders(config)
111
+ merged = _load_defaults(defaults, path.parent)
112
+ without_defaults = OmegaConf.create({k: v for k, v in config.items() if k != "defaults"})
113
+ return _resolve_custom_placeholders(OmegaConf.merge(merged, without_defaults))
114
+
115
+
116
+ def load_idea_agent_config(config_path: Optional[str] = None) -> Any:
117
+ config = load_project_config(config_path)
118
+ idea_config = config.get("idea") if hasattr(config, "get") else None
119
+ if idea_config is not None:
120
+ return idea_config
121
+ return config
122
+
123
+
124
+ def get_config_value(config: Optional[Any], key: str, default: Any) -> Any:
125
+ if config is None:
126
+ return default
127
+ try:
128
+ value = OmegaConf.select(config, key)
129
+ except Exception:
130
+ value = None
131
+ return default if value is None else value
132
+
133
+
134
+ def get_workspace_root(config: Optional[Any] = None) -> Path:
135
+ workspace_root = get_config_value(config, "workspace.root", None)
136
+ if workspace_root in (None, "", "None"):
137
+ try:
138
+ project_config = load_project_config()
139
+ except Exception:
140
+ project_config = None
141
+ workspace_root = get_config_value(project_config, "workspace.root", None)
142
+ if workspace_root in (None, "", "None"):
143
+ return (REPO_ROOT / "workspace").resolve()
144
+ return Path(str(workspace_root)).expanduser().resolve()
145
+
146
+
147
+ def resolve_workspace_path(path_value: Any, config: Optional[Any] = None) -> str:
148
+ raw = str(path_value or "").strip()
149
+ if not raw:
150
+ return raw
151
+ candidate = Path(raw).expanduser()
152
+ if candidate.is_absolute():
153
+ return str(candidate.resolve())
154
+
155
+ repo_root = REPO_ROOT.resolve()
156
+ workspace_root = get_workspace_root(config)
157
+
158
+ for root in (repo_root, workspace_root):
159
+ resolved = (root / candidate).resolve()
160
+ if resolved.exists():
161
+ return str(resolved)
162
+
163
+ repo_relative_roots = {"src", "models", "data", "database", "docs", "graph", "tests"}
164
+ anchor = candidate.parts[0] if candidate.parts else ""
165
+ base_dir = repo_root if anchor in repo_relative_roots else workspace_root
166
+ return str((base_dir / candidate).resolve())
@@ -0,0 +1,28 @@
1
+ """Shared JSON formatting and file helpers for Idea Agent."""
2
+
3
+ from __future__ import annotations
4
+
5
+ import json
6
+ from pathlib import Path
7
+ from typing import Any
8
+
9
+
10
+ def pretty_json(value: Any) -> str:
11
+ return json.dumps(value, ensure_ascii=False, indent=2)
12
+
13
+
14
+ def compact_json(value: Any, *, sort_keys: bool = False) -> str:
15
+ return json.dumps(
16
+ value,
17
+ ensure_ascii=False,
18
+ separators=(",", ":"),
19
+ sort_keys=sort_keys,
20
+ )
21
+
22
+
23
+ def read_json_file(path: Path) -> Any:
24
+ return json.loads(Path(path).read_text(encoding="utf-8"))
25
+
26
+
27
+ def write_json_file(path: Path, payload: Any) -> None:
28
+ Path(path).write_text(pretty_json(payload) + "\n", encoding="utf-8")