qwen-sci 0.2.2__py3-none-any.whl

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Files changed (549) hide show
  1. qwen_sci-0.2.2.dist-info/METADATA +492 -0
  2. qwen_sci-0.2.2.dist-info/RECORD +549 -0
  3. qwen_sci-0.2.2.dist-info/WHEEL +4 -0
  4. qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
  5. qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
  6. src/1.txt +1 -0
  7. src/__init__.py +1 -0
  8. src/__main__.py +5 -0
  9. src/agents/__init__.py +1 -0
  10. src/agents/experiment_design_agent/__init__.py +268 -0
  11. src/agents/experiment_design_agent/artifacts.py +747 -0
  12. src/agents/experiment_design_agent/cache.py +319 -0
  13. src/agents/experiment_design_agent/completeness.py +130 -0
  14. src/agents/experiment_design_agent/contracts.py +771 -0
  15. src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
  16. src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
  17. src/agents/experiment_design_agent/discipline_catalog.py +178 -0
  18. src/agents/experiment_design_agent/evidence_cards.py +338 -0
  19. src/agents/experiment_design_agent/evidence_planner.py +452 -0
  20. src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
  21. src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
  22. src/agents/experiment_design_agent/idea_adapter.py +100 -0
  23. src/agents/experiment_design_agent/idea_intake.py +87 -0
  24. src/agents/experiment_design_agent/llm_json.py +328 -0
  25. src/agents/experiment_design_agent/orchestrator.py +1220 -0
  26. src/agents/experiment_design_agent/reasoning_context.py +183 -0
  27. src/agents/experiment_design_agent/reasoning_validation.py +546 -0
  28. src/agents/experiment_design_agent/run.py +481 -0
  29. src/agents/experiment_design_agent/run_logging.py +292 -0
  30. src/agents/experiment_design_agent/scope_gate.py +198 -0
  31. src/agents/experiment_design_agent/study_type_composer.py +1360 -0
  32. src/agents/experiment_design_agent/survey_evidence.py +1381 -0
  33. src/agents/experiment_design_agent/template_router.py +195 -0
  34. src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
  35. src/agents/idea_agent/__init__.py +1 -0
  36. src/agents/idea_agent/agent/__init__.py +6 -0
  37. src/agents/idea_agent/agent/artifacts.py +308 -0
  38. src/agents/idea_agent/agent/base.py +122 -0
  39. src/agents/idea_agent/agent/ligagent.py +488 -0
  40. src/agents/idea_agent/agent/mcts.py +2060 -0
  41. src/agents/idea_agent/agent/prompts/__init__.py +48 -0
  42. src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
  43. src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
  44. src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
  45. src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
  46. src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
  47. src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
  48. src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
  49. src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
  50. src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
  51. src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
  52. src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
  53. src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
  54. src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
  55. src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
  56. src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
  57. src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
  58. src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
  59. src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
  60. src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
  61. src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
  62. src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
  63. src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
  64. src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
  65. src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
  66. src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
  67. src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
  68. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
  69. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
  70. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
  71. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
  72. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
  73. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
  74. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
  75. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
  76. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
  77. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
  78. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
  79. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
  80. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
  81. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
  82. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
  83. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
  84. src/agents/idea_agent/example/idea_result.json +900 -0
  85. src/agents/idea_agent/run.py +276 -0
  86. src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
  87. src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
  88. src/agents/idea_agent/tests/test_idea_debate.py +480 -0
  89. src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
  90. src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
  91. src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
  92. src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
  93. src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
  94. src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
  95. src/agents/idea_agent/tests/test_result_persistence.py +183 -0
  96. src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
  97. src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
  98. src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
  99. src/agents/idea_agent/utils/core/__init__.py +1 -0
  100. src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
  101. src/agents/idea_agent/utils/core/chat_errors.py +95 -0
  102. src/agents/idea_agent/utils/core/chat_router.py +130 -0
  103. src/agents/idea_agent/utils/core/chat_transport.py +188 -0
  104. src/agents/idea_agent/utils/core/config_loader.py +166 -0
  105. src/agents/idea_agent/utils/core/json_utils.py +28 -0
  106. src/agents/idea_agent/utils/core/logger.py +287 -0
  107. src/agents/idea_agent/utils/core/progress.py +58 -0
  108. src/agents/idea_agent/utils/core/response_parsing.py +57 -0
  109. src/agents/idea_agent/utils/core/run_inputs.py +198 -0
  110. src/agents/idea_agent/utils/mcts/__init__.py +1 -0
  111. src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
  112. src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
  113. src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
  114. src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
  115. src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
  116. src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
  117. src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
  118. src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
  119. src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
  120. src/agents/idea_agent/utils/papers/__init__.py +1 -0
  121. src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
  122. src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
  123. src/agents/idea_agent/utils/prompting/__init__.py +1 -0
  124. src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
  125. src/agents/idea_agent/utils/workflow/__init__.py +1 -0
  126. src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
  127. src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
  128. src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
  129. src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
  130. src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
  131. src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
  132. src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
  133. src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
  134. src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
  135. src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
  136. src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
  137. src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
  138. src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
  139. src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
  140. src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
  141. src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
  142. src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
  143. src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
  144. src/agents/research_plan_author/__init__.py +50 -0
  145. src/agents/research_plan_author/artifacts.py +270 -0
  146. src/agents/research_plan_author/authoring_blueprint.py +1246 -0
  147. src/agents/research_plan_author/bibtex_renderer.py +252 -0
  148. src/agents/research_plan_author/contract_repair.py +131 -0
  149. src/agents/research_plan_author/contracts.py +745 -0
  150. src/agents/research_plan_author/cross_section_editor.py +232 -0
  151. src/agents/research_plan_author/document_quality.py +987 -0
  152. src/agents/research_plan_author/idea_evolution.py +223 -0
  153. src/agents/research_plan_author/input_loader.py +76 -0
  154. src/agents/research_plan_author/latex_compiler.py +260 -0
  155. src/agents/research_plan_author/latex_safety.py +159 -0
  156. src/agents/research_plan_author/llm_json.py +74 -0
  157. src/agents/research_plan_author/markdown_renderer.py +275 -0
  158. src/agents/research_plan_author/pdf_validator.py +149 -0
  159. src/agents/research_plan_author/render.py +166 -0
  160. src/agents/research_plan_author/render_artifacts.py +187 -0
  161. src/agents/research_plan_author/run.py +765 -0
  162. src/agents/research_plan_author/run_logging.py +209 -0
  163. src/agents/research_plan_author/section_cache.py +184 -0
  164. src/agents/research_plan_author/section_composer.py +1764 -0
  165. src/agents/research_plan_author/section_router.py +209 -0
  166. src/agents/research_plan_author/semantic_validator.py +254 -0
  167. src/agents/research_plan_author/source_bundle.py +46 -0
  168. src/agents/research_plan_author/source_registry.py +208 -0
  169. src/agents/research_plan_author/survey_source_loader.py +137 -0
  170. src/agents/research_plan_author/template_adapter.py +173 -0
  171. src/agents/research_plan_author/template_profile.py +204 -0
  172. src/agents/research_plan_author/tex_renderer.py +496 -0
  173. src/agents/research_plan_author/theory_presentation.py +134 -0
  174. src/agents/research_plan_author/theory_spine.py +703 -0
  175. src/agents/survey_agent/Dockerfile +54 -0
  176. src/agents/survey_agent/README.md +350 -0
  177. src/agents/survey_agent/config/deep_survey.yaml +217 -0
  178. src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
  179. src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
  180. src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
  181. src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
  182. src/agents/survey_agent/env_report.md +348 -0
  183. src/agents/survey_agent/modules/__init__.py +0 -0
  184. src/agents/survey_agent/modules/code_collector.py +2194 -0
  185. src/agents/survey_agent/modules/code_report_generator.py +1282 -0
  186. src/agents/survey_agent/modules/data_manager.py +1713 -0
  187. src/agents/survey_agent/modules/database.py +167 -0
  188. src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
  189. src/agents/survey_agent/modules/fulltext_http.py +134 -0
  190. src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
  191. src/agents/survey_agent/modules/judge.py +434 -0
  192. src/agents/survey_agent/modules/outcome_RAG.py +236 -0
  193. src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
  194. src/agents/survey_agent/modules/pe.py +1729 -0
  195. src/agents/survey_agent/modules/pseudo_creator.py +782 -0
  196. src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
  197. src/agents/survey_agent/modules/refine_agent.py +1952 -0
  198. src/agents/survey_agent/modules/survey_generator.py +5691 -0
  199. src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
  200. src/agents/survey_agent/modules/visual_prompts.py +327 -0
  201. src/agents/survey_agent/modules/work_analyzer.py +2750 -0
  202. src/agents/survey_agent/modules/work_collector.py +5649 -0
  203. src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
  204. src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
  205. src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
  206. src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
  207. src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
  208. src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
  209. src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
  210. src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
  211. src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
  212. src/agents/survey_agent/utils/__init__.py +0 -0
  213. src/agents/survey_agent/utils/ablation_utils.py +317 -0
  214. src/agents/survey_agent/utils/api_call.py +2518 -0
  215. src/agents/survey_agent/utils/chat_utils.py +82 -0
  216. src/agents/survey_agent/utils/config_utils.py +70 -0
  217. src/agents/survey_agent/utils/convert_to_md.py +29 -0
  218. src/agents/survey_agent/utils/err_info.py +24 -0
  219. src/agents/survey_agent/utils/file_utils.py +176 -0
  220. src/agents/survey_agent/utils/gpu_utils.py +145 -0
  221. src/agents/survey_agent/utils/graph_visualizer.py +279 -0
  222. src/agents/survey_agent/utils/html_utils.py +181 -0
  223. src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
  224. src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
  225. src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
  226. src/agents/survey_agent/utils/mineru_utils.py +396 -0
  227. src/agents/survey_agent/utils/paper.py +144 -0
  228. src/agents/survey_agent/utils/read_yaml.py +15 -0
  229. src/agents/survey_agent/utils/repo_utils.py +167 -0
  230. src/agents/survey_agent/utils/rich_logger.py +77 -0
  231. src/agents/survey_agent/utils/step2v2.py +874 -0
  232. src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
  233. src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
  234. src/agents/survey_agent/utils/utils.py +118 -0
  235. src/agents/survey_agent/utils/work.py +2 -0
  236. src/cli.py +1611 -0
  237. src/config/__init__.py +213 -0
  238. src/config/default.yaml +1122 -0
  239. src/harness/LICENSE +21 -0
  240. src/harness/VENDORED.md +14 -0
  241. src/harness/src/__init__.py +0 -0
  242. src/harness/src/openharness/__init__.py +0 -0
  243. src/harness/src/openharness/__main__.py +6 -0
  244. src/harness/src/openharness/api/__init__.py +21 -0
  245. src/harness/src/openharness/api/client.py +281 -0
  246. src/harness/src/openharness/api/codex_client.py +407 -0
  247. src/harness/src/openharness/api/copilot_auth.py +240 -0
  248. src/harness/src/openharness/api/copilot_client.py +134 -0
  249. src/harness/src/openharness/api/errors.py +19 -0
  250. src/harness/src/openharness/api/openai_client.py +577 -0
  251. src/harness/src/openharness/api/provider.py +186 -0
  252. src/harness/src/openharness/api/registry.py +437 -0
  253. src/harness/src/openharness/api/usage.py +17 -0
  254. src/harness/src/openharness/auth/__init__.py +29 -0
  255. src/harness/src/openharness/auth/external.py +610 -0
  256. src/harness/src/openharness/auth/flows.py +189 -0
  257. src/harness/src/openharness/auth/manager.py +482 -0
  258. src/harness/src/openharness/auth/storage.py +269 -0
  259. src/harness/src/openharness/autopilot/__init__.py +23 -0
  260. src/harness/src/openharness/autopilot/service.py +2239 -0
  261. src/harness/src/openharness/autopilot/types.py +91 -0
  262. src/harness/src/openharness/bridge/__init__.py +20 -0
  263. src/harness/src/openharness/bridge/manager.py +106 -0
  264. src/harness/src/openharness/bridge/session_runner.py +46 -0
  265. src/harness/src/openharness/bridge/types.py +37 -0
  266. src/harness/src/openharness/bridge/work_secret.py +41 -0
  267. src/harness/src/openharness/channels/UPSTREAM +6 -0
  268. src/harness/src/openharness/channels/__init__.py +22 -0
  269. src/harness/src/openharness/channels/adapter.py +131 -0
  270. src/harness/src/openharness/channels/bus/__init__.py +6 -0
  271. src/harness/src/openharness/channels/bus/events.py +38 -0
  272. src/harness/src/openharness/channels/bus/queue.py +44 -0
  273. src/harness/src/openharness/channels/impl/__init__.py +6 -0
  274. src/harness/src/openharness/channels/impl/base.py +141 -0
  275. src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
  276. src/harness/src/openharness/channels/impl/discord.py +311 -0
  277. src/harness/src/openharness/channels/impl/email.py +410 -0
  278. src/harness/src/openharness/channels/impl/feishu.py +1342 -0
  279. src/harness/src/openharness/channels/impl/manager.py +257 -0
  280. src/harness/src/openharness/channels/impl/matrix.py +700 -0
  281. src/harness/src/openharness/channels/impl/mochat.py +897 -0
  282. src/harness/src/openharness/channels/impl/qq.py +141 -0
  283. src/harness/src/openharness/channels/impl/slack.py +284 -0
  284. src/harness/src/openharness/channels/impl/telegram.py +525 -0
  285. src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
  286. src/harness/src/openharness/cli.py +2551 -0
  287. src/harness/src/openharness/commands/__init__.py +21 -0
  288. src/harness/src/openharness/commands/registry.py +2783 -0
  289. src/harness/src/openharness/config/__init__.py +34 -0
  290. src/harness/src/openharness/config/paths.py +160 -0
  291. src/harness/src/openharness/config/schema.py +119 -0
  292. src/harness/src/openharness/config/settings.py +1104 -0
  293. src/harness/src/openharness/coordinator/__init__.py +12 -0
  294. src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
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+ src/agents/experiment_design_agent/run_logging.py,sha256=3QfglD33--EXTujt0GqfOEzK8NvQJ_-msYOXx1a9E9M,9808
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+ src/agents/experiment_design_agent/template_router.py,sha256=wSiPbEOT9uNTlx6xLEbtYDqnkaLyA_f66rVAAg1kCdE,9800
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+ src/agents/experiment_design_agent/variable_claim_extractor.py,sha256=VnRyJWkq9krkKhrh8Fm2PpokbFLsWbDrUewVuJyMD6Y,3863
32
+ src/agents/idea_agent/__init__.py,sha256=WGZ8lW-IksSgcsewC86N_5VZ1UAD43YAl9NuxVToUjg,25
33
+ src/agents/idea_agent/run.py,sha256=425WL78PDTwAyJk26MVJLTpDJzbhHHHWyYirfvVOOg8,10658
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+ src/agents/idea_agent/agent/__init__.py,sha256=Hfqql3ctyKfzJrayFPMPnmK3UNqIP89zRacD6T7i7Y0,128
35
+ src/agents/idea_agent/agent/artifacts.py,sha256=cZioJwQ6eeg7djbjZ8N9Wl0o7mkx18Xv1dxKsjKEI2E,12228
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+ src/agents/idea_agent/agent/base.py,sha256=XXedX3GdZNcBml7FJP54M8f6Bz4tG4ReWh1uc3zyreg,4647
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+ src/agents/idea_agent/agent/ligagent.py,sha256=AOBBlA63gExCTkIAoPeiz6naGb5J4xhUJv3Vwb02uLQ,21020
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+ src/agents/idea_agent/agent/mcts.py,sha256=JMg5clMUNyuouFZQW58Y6co4WhnIXoDa6Ui3Xt1yj4g,87637
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+ src/agents/idea_agent/agent/prompts/__init__.py,sha256=14oaXa_r7whom6oa9c2iyfOJRUlnWByxKmHxVfY3F4A,2639
40
+ src/agents/idea_agent/agent/prompts/advanced_analysis.py,sha256=BEo50g4xtSQ9Iqt2ajeTueAvHbus7bnciAqcIVSbk4w,19626
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+ src/agents/idea_agent/agent/prompts/algorithm_alignment.py,sha256=RgVMORO3dlHtLurZyM9vKp2cqgoRExCe8f9p-eaOxCc,2186
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+ src/agents/idea_agent/agent/prompts/algorithm_structuring.py,sha256=Rgz6MiG4Bti6i_ePw8x2A4fbVwwPMmnkDTdqno1djtQ,2167
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+ src/agents/idea_agent/agent/prompts/component_extraction.py,sha256=6AAr-ejKDnl-hdtLQQ-r2QKqNveNPfzEtO14fM8q4h8,4255
44
+ src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py,sha256=AbqxIMXsG7w0-6jFS-9wBD0lv1mwYZwBC0d8Ru86Ww0,3081
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+ src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py,sha256=xy_pvqY6c9Fu8sAmwtzu9_UrZ1oTuvEnUHXshovP320,1430
46
+ src/agents/idea_agent/agent/prompts/idea_fusion.py,sha256=UFJ30qa6H8VC85VwelO0UnmI1vgToGfVimyqyg48FJk,12314
47
+ src/agents/idea_agent/agent/prompts/idea_introduction.py,sha256=jZU7u11ay3_QIsobDSFRgEDhjm5qCzS-6zy-1MPN-fo,1860
48
+ src/agents/idea_agent/agent/prompts/idea_result_alignment.py,sha256=bujGqbYHyUa9nDTVxPrQC1JhvNPRFyEqnwLCAThkFek,1959
49
+ src/agents/idea_agent/agent/prompts/input_interpreter.py,sha256=qSOp4L23ROixQ7rMF7lUQqJXQaYi6N1gn8PWYrJNLP0,2314
50
+ src/agents/idea_agent/agent/prompts/keynote_ops.py,sha256=qMJKzp7ZgfvxiA_l5TT9Y_TA6PD72kRUYLbBhIu8dN0,1356
51
+ src/agents/idea_agent/agent/prompts/mcts_evaluation.py,sha256=iM0i4iKbi3Wivx2e6U9OJiR9fnCJSqs9Jo0Q70Ol-3s,17688
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+ src/agents/idea_agent/agent/prompts/mcts_generation.py,sha256=e0fylmLfbHnDxDoyBMvqZLyBYKVp0v0s9HRkUyF25Zs,10058
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+ src/agents/idea_agent/agent/prompts/mechanism_commit_query.py,sha256=6YMDUdc6c3QfPuk6kEfMO6cn7fw8_FKK9-TREjsjaQc,5278
54
+ src/agents/idea_agent/agent/prompts/memory_selection.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
55
+ src/agents/idea_agent/agent/prompts/prompt_modes.py,sha256=8rhFMTVPqGNOzv9i3CsmQW2IvqxH8YGUgQkAxfKVzvU,450
56
+ src/agents/idea_agent/agent/prompts/rag_query.py,sha256=1_VaZdOCl24Q3qwNk3f3ntqAuBDgwt7FfIiveEy8qPc,1847
57
+ src/agents/idea_agent/agent/prompts/re_analysis_replan.py,sha256=mnT69Nk8M05o-Y9hkKRb-1FZjBWyei1xm3I9MwCtKOM,2833
58
+ src/agents/idea_agent/agent/prompts/reference_grounding.py,sha256=EIHRFilF7oHoMnluhdsuz4YrQICOakezwHno0RcLxbk,917
59
+ src/agents/idea_agent/agent/prompts/root_domain_classification.py,sha256=OB9_ML3gJXZPdBhPs5PNPvA5ERSWHhPj-t0DVeZ2I-Q,1196
60
+ src/agents/idea_agent/agent/prompts/scientific_debate.py,sha256=6rENj-yyqj-VMNmpYRRBR7aXnmP8CCtOhHCagvq9kUM,3932
61
+ src/agents/idea_agent/agent/prompts/scientific_materialization.py,sha256=6Ar1Woa9-2PN6YVAeKijWl8FCwLtCVD2c3xgkv9uoFQ,2100
62
+ src/agents/idea_agent/agent/prompts/skill_instantiation.py,sha256=VJU1eIK3CvxM8Ffy-w3t_b65_vj9F2LxVdVVS31scJY,14117
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+ src/agents/idea_agent/agent/prompts/theory_transfer_query.py,sha256=J4IKHOzobxF_CiJEXm2xeDIeK1BruJXOBHeOne4LIRA,4375
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+ src/agents/idea_agent/agent/prompts/topic_background.py,sha256=vgel2gWCOXllH4kC-ljZLQjJO_5wPafzcAHhpZ6PhTM,583
65
+ src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json,sha256=9uHfk21BAcS8zZROH8SayknQnE7tPKu1BttUDbNJBO0,10034
66
+ src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md,sha256=xU3KxjA3HD8bHWe_r2DiqIypidWMrfdMy87j_2HwcbM,1204
67
+ src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md,sha256=lYT-oB5UW-IAnLWjdsRd6PC5WjAUHZ4n73mM1bC7naU,1662
68
+ src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md,sha256=gYWeEhJl6CTGO7Y7Hy-46X7sciLxZmJwldwmY-QwYoU,1016
69
+ src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md,sha256=fcOzPpX-ITSy8v-1ZTCr_gAveLO1xBHAoTSda5pZHW0,1781
70
+ src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md,sha256=S6_BwKR93d5VJ8WLF9WXhVCsx3wyd0U-uPqKcQCe0BY,1052
71
+ src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md,sha256=-SQoUXmZArIBzIdpsi4aLioQiT0ETI2XQjHmcPHfPts,1564
72
+ src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md,sha256=BdwCd54dP-PWZEApimk5xgLyqPBKrKWfzgDpORDvxvs,1205
73
+ src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md,sha256=0TgVCDiNBK2CcA4Zec1Pou0w-iKOlU__4NoPRtp7cdk,1819
74
+ src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md,sha256=fmLlh0BRzhnjI3j1GWpNKxsa_eD80VSHfwNyJKIG6yo,1113
75
+ src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md,sha256=-gQn91NJPhquDocXtSe0VNdwwyvwCFrTJzeIK3LAlQ8,1561
76
+ src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md,sha256=xPWVdXWigFEeB7o2dA1QHJtiMpQqVsCnRY7FTVKZjjA,1088
77
+ src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md,sha256=UdbhXcTFrWrXRqqoMn2qpR-qMTxFFCMyeRladrnMvus,1518
78
+ src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md,sha256=aUjY0exGP4fKQQ4X0r7tM6s28qcW8XYWBb99-Ru4sHE,920
79
+ src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md,sha256=L6ATTrUMhYRsAB7YsXQrgpNgD4KEkI3dQLsfGtoDn48,1540
80
+ src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md,sha256=tWW_oZOfsnygCpcuFU9IH5Vhx29SVOjSqfouTtp4hMM,1055
81
+ src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md,sha256=9liBTlNG77TxNLQIwMNi_rb8yGp5P5B2rxM9vlWQhxI,1781
82
+ src/agents/idea_agent/example/idea_result.json,sha256=3DmW6tF-jX5Qak7t0XvaqVH4lRV81ow2JeIoLvRuUjE,97673
83
+ src/agents/idea_agent/tests/test_advanced_analysis_contract.py,sha256=moiZ1QbNNHBBILzSDgCgTxAp1JpS2nJwPj5EvmjCtlc,4039
84
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85
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86
+ src/agents/idea_agent/tests/test_idea_result_v5.py,sha256=9NKEYTIop7km2cImJCYqIDlJAYX5KQEwBsP91AnFgBg,4422
87
+ src/agents/idea_agent/tests/test_idea_synthesis.py,sha256=7VQ51iNvNOpVMYTQhPbw2FRvID5LFMTwgwB06hAUGwg,3908
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89
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90
+ src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py,sha256=922b2PSCcIkVkFXinXSUaHEEeg_BTPN9MEzbN603Zh4,8003
91
+ src/agents/idea_agent/tests/test_profile_native_skill_rendering.py,sha256=GqJfv2fNzLOzWF423Is9LOOjk1m-_J7FAQHNVGjR0cw,4621
92
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93
+ src/agents/idea_agent/tests/test_scientific_intervention_profiles.py,sha256=mJCIT-zs8fmwuc8034awDr6LuK4mkpYs7X6YDPgn2iw,8529
94
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95
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96
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97
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98
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100
+ src/agents/idea_agent/utils/core/chat_transport.py,sha256=0fj6wxiC2FclQOswG5mUhmyS-ml_WC6gOBzazWe7gu8,6273
101
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102
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104
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105
+ src/agents/idea_agent/utils/core/response_parsing.py,sha256=Ubul3bqGP9agsgjAVyqjw-9S2mvxWKWCpaTv7flRM_U,1883
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108
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109
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110
+ src/agents/idea_agent/utils/mcts/idea_routes.py,sha256=dNfomWFTl5FWKfpY4LrTlLx4ecNJrmTH6xZkxJOftbw,3025
111
+ src/agents/idea_agent/utils/mcts/idea_taste_presets.py,sha256=y7Jhyw70sCyaO12-J1StHRF5RucJr09sIuoTRdzsmUE,10937
112
+ src/agents/idea_agent/utils/mcts/mcts_helpers.py,sha256=tGpVqtC-9J9dTPkeTYpyx0b3oWB9gn49y6GmGe51Xjg,25817
113
+ src/agents/idea_agent/utils/mcts/mcts_runtime.py,sha256=J1huFRC8dveP0ljCdzZdgAx--_5Ob9z43BFHwgD_DLY,125386
114
+ src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py,sha256=P24F_kjDmZTL3xjfKwZocgVn83-BfSV2H_npjiLJW5w,77492
115
+ src/agents/idea_agent/utils/mcts/scientific_rubric.py,sha256=6xsCBBBhZwwxZLkZc55T_kCsah9SAKCE_tQniexd95c,7726
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+ src/agents/idea_agent/utils/mcts/skill_parsing.py,sha256=qaOk9NaFpVqpSozPBsaYJSjf20JTczjJmW2ip9Ru0Ls,2998
117
+ src/agents/idea_agent/utils/papers/__init__.py,sha256=FRBf8XzN_zCMnp9JyxAuyuZt816xBbJgSuNoweB7XRc,72
118
+ src/agents/idea_agent/utils/papers/paper_graph_vector_store.py,sha256=rGDKyz3pdROKpZ9f50B3gmCptwtgaS6uhQtUMuRRZxE,17703
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+ src/agents/idea_agent/utils/papers/paper_repository.py,sha256=mx11JlCvzBJqgjP3q6yj3ymRAAD9CTeCzPdyIlvFHR8,14088
120
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121
+ src/agents/idea_agent/utils/prompting/prompt_views.py,sha256=RshTNTQYtBgTua_eSB_ad95mjtVjHv-xziOJrai760c,24798
122
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123
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125
+ src/agents/idea_agent/utils/workflow/idea_contract.py,sha256=okHnndZUOcctzme-C86A-mDJznOYlnKuvJSGnQXyV5E,15627
126
+ src/agents/idea_agent/utils/workflow/idea_debate.py,sha256=Fp0p7r9ehxHdmpDPp5j9gRG6yah-WI7zOXIVaI7YBG4,52382
127
+ src/agents/idea_agent/utils/workflow/idea_diversity.py,sha256=862DXQ3OV4AP4JSLBPR6-CAHuheaUGUMXB1RrkEcODs,6014
128
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129
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130
+ src/agents/idea_agent/utils/workflow/idea_portfolio.py,sha256=G5dtEg538OVls4PHairGDKrPrdmBQyWKJA0J5SHfvTw,18470
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132
+ src/agents/idea_agent/utils/workflow/ligagent_flow.py,sha256=IOST0hKJGZmgTtoY7NtxPynQJMIpgs_ckv-CbP647hQ,24480
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136
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137
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+ src/agents/idea_agent/utils/workflow/stage_contract.py,sha256=-yCfpm02HwQywjsFDGPY0Uq7x4TF8R4GKYM6eacgo-s,2018
140
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141
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142
+ src/agents/research_plan_author/artifacts.py,sha256=ltWS9snLS38v1cOzmLkAm9ZPCCSScPqug6x49ViLNjU,11692
143
+ src/agents/research_plan_author/authoring_blueprint.py,sha256=OOR99sTIgkKtuOOg1zYLXbDHtI3_KByMj-vLoexFglM,54970
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+ src/agents/research_plan_author/bibtex_renderer.py,sha256=nzF9pRRB-OZIFZHqOTKuWhY4WZ4BaGwjDooi5EhovsM,9238
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+ src/agents/research_plan_author/contract_repair.py,sha256=5MHOlq7455tUuudyNu95E4Of6oiSjmko2K4ghpGTVrU,5980
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+ src/agents/research_plan_author/contracts.py,sha256=A_IG7rgru9nYqBmT_KSXbM5_salO7TdOWUNMtmmQzNE,33387
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148
+ src/agents/research_plan_author/document_quality.py,sha256=xpfPvLj8d5Mf7kTOGdGyDWT-4375d86HxR74mYltj1I,49749
149
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+ src/pipeline/multimodal_evidence/safety.py,sha256=Ug9JU3todfgARDi9FMWyaFbhL4q9nVbxePovuBq0moA,1248
542
+ src/pipeline/multimodal_evidence/sampling.py,sha256=RJr0p2oLpHMV8eN0s09bvK9_i7QaQIgSdkcmSx4R6Nc,2853
543
+ src/pipeline/multimodal_evidence/service.py,sha256=U5VO5AXj2tZjwsC-9Vi8yjQwfB6zHC6-3Za6yS1Knp0,5936
544
+ src/pipeline/multimodal_evidence/survey_integration.py,sha256=62No1YLkAWLE-ko7wl1GoEGztoUpCJsT54_1EvDCKqs,17433
545
+ qwen_sci-0.2.2.dist-info/METADATA,sha256=aTwFc0HRIxPPVcQtSyQ3iCkLakDM7XhXNadfIN9Lz2A,22832
546
+ qwen_sci-0.2.2.dist-info/WHEEL,sha256=zOwg4jB6zX2kU910N-cMawjivD6tO8NEWvE12je1bVk,87
547
+ qwen_sci-0.2.2.dist-info/entry_points.txt,sha256=DKyyWnw0-mPU6yJjLCM4v4LqCytD0_PcEy2wtm6Gx_g,213
548
+ qwen_sci-0.2.2.dist-info/licenses/LICENSE,sha256=fOGRA1KWCx808ggmgCL4j-YYYQT3eC4ZNLeuWNwi1B0,1064
549
+ qwen_sci-0.2.2.dist-info/RECORD,,
@@ -0,0 +1,4 @@
1
+ Wheel-Version: 1.0
2
+ Generator: hatchling 1.32.0
3
+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
@@ -0,0 +1,6 @@
1
+ [console_scripts]
2
+ qwensci = src.cli:main
3
+ qwensci-doctor = src.cli:doctor_main
4
+ qwensci-idea = src.cli:idea_main
5
+ qwensci-install-mcp-wrappers = src.cli:install_mcp_wrappers_main
6
+ qwensci-survey = src.cli:survey_main