qwen-sci 0.2.2__py3-none-any.whl

qwen_sci-0.2.2.dist-info/licenses/LICENSE

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+MIT License
+
+Copyright (c) 2026 OpenDFM
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

src/1.txt

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+qwensci

src/__init__.py

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+"""Research Agent System."""

src/__main__.py

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+from src.cli import main
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())

src/agents/__init__.py

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+"""Agents module."""

src/agents/experiment_design_agent/__init__.py

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+"""Contracts and policy primitives for the design-only experiment agent."""
+
+from .contracts import (
+    EVIDENCE_BUNDLE_SCHEMA,
+    EVIDENCE_BUNDLE_SCHEMA_VERSION,
+    EXPERIMENT_DESIGN_SCHEMA,
+    EXPERIMENT_DESIGN_SCHEMA_VERSION,
+    OUTCOME_BRANCH_SCHEMA,
+    OUTCOME_BRANCH_SCHEMA_VERSION,
+    RESEARCH_BRIEF_SCHEMA,
+    RESEARCH_BRIEF_SCHEMA_VERSION,
+    build_research_brief_from_idea_result,
+    validate_evidence_bundle,
+    validate_experiment_design,
+    validate_outcome_branch,
+    validate_research_brief,
+)
+from .cache import (
+    EXPERIMENT_DESIGN_CACHE_SCHEMA_VERSION,
+    EXPERIMENT_DESIGN_RUN_MANIFEST_SCHEMA_VERSION,
+    ExperimentDesignCache,
+)
+from .artifacts import (
+    ARTIFACT_SCHEMA_VERSION,
+    AUTHOR_HANDOFF_SCHEMA_VERSION,
+    ArtifactError,
+    ArtifactValidationError,
+    ArtifactWriteError,
+    ExperimentDesignArtifactPaths,
+    ExperimentDesignArtifactWriter,
+    build_author_handoff,
+    generate_timestamp,
+    render_markdown,
+    write_experiment_design_artifacts,
+)
+from .discipline_catalog import (
+    DESIGN_ONLY,
+    DIGITAL_EXECUTION_ELIGIBLE,
+    EXCLUDED_DISCIPLINE_IDS,
+    PERMITTED_DISCIPLINE_IDS,
+    resolve_design_scope,
+    resolve_execution_policy,
+)
+from .completeness import (
+    COMPLETENESS_REPORT_SCHEMA_VERSION,
+    FIELD_SOURCE_STATUSES,
+    CompletenessValidator,
+)
+from .evidence_planner import (
+    EVIDENCE_RETRIEVAL_PLAN_SCHEMA_VERSION,
+    EVIDENCE_RETRIEVAL_PLANNER_PROMPT,
+    EvidenceRetrievalPlanner,
+    build_evidence_retrieval_planner_prompt,
+)
+from .evidence_cards import (
+    EVIDENCE_CARD_EXTRACTOR_PROMPT,
+    FIELD_SLOT_REQUIREMENTS,
+    EvidenceCardExtractor,
+    build_evidence_card_extractor_prompt,
+    build_field_evidence_ledger,
+    build_traceable_evidence_bundle,
+)
+from .idea_adapter import IdeaResultAdapter, adapt_idea_result, adapt_idea_result_path
+from .idea_intake import (
+    AUDIT_ARTIFACT_NAMES,
+    MAIN_ARTIFACT_NAME,
+    load_idea_artifact_bundle,
+    load_idea_result_and_audit_sources,
+)
+from .counterexample_analyzer import (
+    COUNTEREXAMPLE_ANALYSIS_SCHEMA_VERSION,
+    COUNTEREXAMPLE_ANALYZER_PROMPT,
+    CounterexampleAnalyzer,
+    build_counterexample_analyzer_prompt,
+    not_applicable_counterexample_analysis,
+)
+from .formal_reasoning_planner import (
+    FORMAL_REASONING_CONTRACT_REPAIR_PROMPT,
+    FORMAL_REASONING_PLAN_SCHEMA_VERSION,
+    FORMAL_REASONING_REPAIR_PATCH_SCHEMA_VERSION,
+    FORMAL_REASONING_PLANNER_PROMPT,
+    FORMAL_REASONING_REPAIR_AUDIT_SCHEMA_VERSION,
+    FormalReasoningPlanContractError,
+    FormalReasoningPlanner,
+    build_formal_reasoning_contract_repair_prompt,
+    build_formal_reasoning_planner_prompt,
+    not_applicable_formal_reasoning_plan,
+)
+from .llm_json import (
+    JSON_OBJECT_RESPONSE_FORMAT,
+    RequiredJsonLLMError,
+    build_default_json_llm_call,
+    call_required_json,
+)
+from .reasoning_context import (
+    REASONING_CONTEXT_SCHEMA,
+    REASONING_CONTEXT_SCHEMA_VERSION,
+    build_reasoning_context_from_brief,
+    build_reasoning_context_from_idea_result,
+)
+from .reasoning_validation import (
+    validate_counterexample_analysis,
+    validate_formal_reasoning_plan,
+    validate_reasoning_artifacts,
+    validate_variable_claim_model,
+)
+from .orchestrator import (
+    DESIGN_PREPARATION_SCHEMA_VERSION,
+    DESIGN_RUN_SCHEMA_VERSION,
+    ExperimentDesignOrchestrator,
+)
+from .scope_gate import SCOPE_GATE_SCHEMA_VERSION, ScopeAndSafetyGate
+from .study_type_composer import (
+    STUDY_TYPE_TEMPLATE_COMPOSER_CONTRACT_REPAIR_PROMPT,
+    STUDY_TYPE_TEMPLATE_COMPOSER_PROMPTS,
+    STUDY_TYPE_TEMPLATE_COMPOSER_SCHEMA_VERSION,
+    StudyTypeTemplateComposer,
+    build_study_type_template_composer_contract_repair_prompt,
+    build_study_type_template_composer_prompt,
+)
+from .variable_claim_extractor import (
+    VARIABLE_CLAIM_EXTRACTOR_PROMPT,
+    VARIABLE_CLAIM_MODEL_SCHEMA_VERSION,
+    VariableClaimExtractor,
+    build_variable_claim_extractor_prompt,
+)
+from .survey_evidence import (
+    SURVEY_EVIDENCE_ADAPTATION_SCHEMA_VERSION,
+    SURVEY_EVIDENCE_COLLECTION_SCHEMA_VERSION,
+    OpenAlexWorksClient,
+    ProviderQueryError,
+    ProviderUnavailable,
+    SemanticScholarWorksClient,
+    SurveyArtifactAdapter,
+    SurveyEvidenceAdapter,
+    SurveyEvidenceCollector,
+)
+from .fulltext_acquisition import (
+    FULLTEXT_ACQUISITION_SCHEMA_VERSION,
+    SurveyCompatibleFulltextAcquirer,
+)
+from .design_evidence_paper_screener import (
+    DESIGN_EVIDENCE_PAPER_SCREEN_SCHEMA_VERSION,
+    DESIGN_EVIDENCE_SCREENING_AUDIT_SCHEMA_VERSION,
+    DESIGN_EVIDENCE_PAPER_SCREENER_PROMPT,
+    DesignEvidencePaperScreeningError,
+    DesignEvidencePaperScreener,
+    build_design_evidence_paper_screener_prompt,
+)
+from .template_router import TEMPLATE_ROUTING_SCHEMA_VERSION, TemplateRouter, get_template_profile
+
+__all__ = [
+    "DESIGN_ONLY",
+    "DESIGN_PREPARATION_SCHEMA_VERSION",
+    "DESIGN_RUN_SCHEMA_VERSION",
+    "DIGITAL_EXECUTION_ELIGIBLE",
+    "ARTIFACT_SCHEMA_VERSION",
+    "AUTHOR_HANDOFF_SCHEMA_VERSION",
+    "ArtifactError",
+    "ArtifactValidationError",
+    "ArtifactWriteError",
+    "ExperimentDesignArtifactPaths",
+    "ExperimentDesignArtifactWriter",
+    "COMPLETENESS_REPORT_SCHEMA_VERSION",
+    "EXPERIMENT_DESIGN_CACHE_SCHEMA_VERSION",
+    "EXPERIMENT_DESIGN_RUN_MANIFEST_SCHEMA_VERSION",
+    "ExperimentDesignCache",
+    "EVIDENCE_BUNDLE_SCHEMA",
+    "EVIDENCE_BUNDLE_SCHEMA_VERSION",
+    "EVIDENCE_CARD_EXTRACTOR_PROMPT",
+    "EvidenceCardExtractor",
+    "COUNTEREXAMPLE_ANALYSIS_SCHEMA_VERSION",
+    "COUNTEREXAMPLE_ANALYZER_PROMPT",
+    "CounterexampleAnalyzer",
+    "EVIDENCE_RETRIEVAL_PLAN_SCHEMA_VERSION",
+    "EVIDENCE_RETRIEVAL_PLANNER_PROMPT",
+    "FORMAL_REASONING_PLAN_SCHEMA_VERSION",
+    "FORMAL_REASONING_REPAIR_PATCH_SCHEMA_VERSION",
+    "FORMAL_REASONING_REPAIR_AUDIT_SCHEMA_VERSION",
+    "FORMAL_REASONING_PLANNER_PROMPT",
+    "FORMAL_REASONING_CONTRACT_REPAIR_PROMPT",
+    "FormalReasoningPlanContractError",
+    "FormalReasoningPlanner",
+    "EXCLUDED_DISCIPLINE_IDS",
+    "EXPERIMENT_DESIGN_SCHEMA",
+    "EXPERIMENT_DESIGN_SCHEMA_VERSION",
+    "ExperimentDesignOrchestrator",
+    "EvidenceRetrievalPlanner",
+    "FIELD_SLOT_REQUIREMENTS",
+    "FIELD_SOURCE_STATUSES",
+    "IdeaResultAdapter",
+    "MAIN_ARTIFACT_NAME",
+    "AUDIT_ARTIFACT_NAMES",
+    "JSON_OBJECT_RESPONSE_FORMAT",
+    "OUTCOME_BRANCH_SCHEMA",
+    "OUTCOME_BRANCH_SCHEMA_VERSION",
+    "PERMITTED_DISCIPLINE_IDS",
+    "RESEARCH_BRIEF_SCHEMA",
+    "RESEARCH_BRIEF_SCHEMA_VERSION",
+    "REASONING_CONTEXT_SCHEMA",
+    "REASONING_CONTEXT_SCHEMA_VERSION",
+    "RequiredJsonLLMError",
+    "SCOPE_GATE_SCHEMA_VERSION",
+    "ScopeAndSafetyGate",
+    "STUDY_TYPE_TEMPLATE_COMPOSER_CONTRACT_REPAIR_PROMPT",
+    "STUDY_TYPE_TEMPLATE_COMPOSER_PROMPTS",
+    "STUDY_TYPE_TEMPLATE_COMPOSER_SCHEMA_VERSION",
+    "StudyTypeTemplateComposer",
+    "VARIABLE_CLAIM_EXTRACTOR_PROMPT",
+    "VARIABLE_CLAIM_MODEL_SCHEMA_VERSION",
+    "VariableClaimExtractor",
+    "SURVEY_EVIDENCE_ADAPTATION_SCHEMA_VERSION",
+    "SURVEY_EVIDENCE_COLLECTION_SCHEMA_VERSION",
+    "FULLTEXT_ACQUISITION_SCHEMA_VERSION",
+    "DESIGN_EVIDENCE_PAPER_SCREEN_SCHEMA_VERSION",
+    "DESIGN_EVIDENCE_SCREENING_AUDIT_SCHEMA_VERSION",
+    "DESIGN_EVIDENCE_PAPER_SCREENER_PROMPT",
+    "SemanticScholarWorksClient",
+    "SurveyArtifactAdapter",
+    "SurveyEvidenceAdapter",
+    "SurveyEvidenceCollector",
+    "SurveyCompatibleFulltextAcquirer",
+    "DesignEvidencePaperScreeningError",
+    "DesignEvidencePaperScreener",
+    "TEMPLATE_ROUTING_SCHEMA_VERSION",
+    "TemplateRouter",
+    "CompletenessValidator",
+    "adapt_idea_result",
+    "build_counterexample_analyzer_prompt",
+    "build_evidence_card_extractor_prompt",
+    "build_formal_reasoning_planner_prompt",
+    "build_formal_reasoning_contract_repair_prompt",
+    "build_research_brief_from_idea_result",
+    "build_reasoning_context_from_brief",
+    "build_reasoning_context_from_idea_result",
+    "build_study_type_template_composer_contract_repair_prompt",
+    "build_study_type_template_composer_prompt",
+    "build_variable_claim_extractor_prompt",
+    "build_field_evidence_ledger",
+    "build_traceable_evidence_bundle",
+    "build_evidence_retrieval_planner_prompt",
+    "build_design_evidence_paper_screener_prompt",
+    "build_author_handoff",
+    "generate_timestamp",
+    "render_markdown",
+    "write_experiment_design_artifacts",
+    "get_template_profile",
+    "call_required_json",
+    "build_default_json_llm_call",
+    "adapt_idea_result_path",
+    "load_idea_artifact_bundle",
+    "load_idea_result_and_audit_sources",
+    "not_applicable_counterexample_analysis",
+    "not_applicable_formal_reasoning_plan",
+    "OpenAlexWorksClient",
+    "ProviderQueryError",
+    "ProviderUnavailable",
+    "resolve_design_scope",
+    "resolve_execution_policy",
+    "validate_evidence_bundle",
+    "validate_experiment_design",
+    "validate_counterexample_analysis",
+    "validate_formal_reasoning_plan",
+    "validate_reasoning_artifacts",
+    "validate_variable_claim_model",
+    "validate_outcome_branch",
+    "validate_research_brief",
+]