qwen-sci 0.2.2__py3-none-any.whl

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Files changed (549) hide show
  1. qwen_sci-0.2.2.dist-info/METADATA +492 -0
  2. qwen_sci-0.2.2.dist-info/RECORD +549 -0
  3. qwen_sci-0.2.2.dist-info/WHEEL +4 -0
  4. qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
  5. qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
  6. src/1.txt +1 -0
  7. src/__init__.py +1 -0
  8. src/__main__.py +5 -0
  9. src/agents/__init__.py +1 -0
  10. src/agents/experiment_design_agent/__init__.py +268 -0
  11. src/agents/experiment_design_agent/artifacts.py +747 -0
  12. src/agents/experiment_design_agent/cache.py +319 -0
  13. src/agents/experiment_design_agent/completeness.py +130 -0
  14. src/agents/experiment_design_agent/contracts.py +771 -0
  15. src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
  16. src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
  17. src/agents/experiment_design_agent/discipline_catalog.py +178 -0
  18. src/agents/experiment_design_agent/evidence_cards.py +338 -0
  19. src/agents/experiment_design_agent/evidence_planner.py +452 -0
  20. src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
  21. src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
  22. src/agents/experiment_design_agent/idea_adapter.py +100 -0
  23. src/agents/experiment_design_agent/idea_intake.py +87 -0
  24. src/agents/experiment_design_agent/llm_json.py +328 -0
  25. src/agents/experiment_design_agent/orchestrator.py +1220 -0
  26. src/agents/experiment_design_agent/reasoning_context.py +183 -0
  27. src/agents/experiment_design_agent/reasoning_validation.py +546 -0
  28. src/agents/experiment_design_agent/run.py +481 -0
  29. src/agents/experiment_design_agent/run_logging.py +292 -0
  30. src/agents/experiment_design_agent/scope_gate.py +198 -0
  31. src/agents/experiment_design_agent/study_type_composer.py +1360 -0
  32. src/agents/experiment_design_agent/survey_evidence.py +1381 -0
  33. src/agents/experiment_design_agent/template_router.py +195 -0
  34. src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
  35. src/agents/idea_agent/__init__.py +1 -0
  36. src/agents/idea_agent/agent/__init__.py +6 -0
  37. src/agents/idea_agent/agent/artifacts.py +308 -0
  38. src/agents/idea_agent/agent/base.py +122 -0
  39. src/agents/idea_agent/agent/ligagent.py +488 -0
  40. src/agents/idea_agent/agent/mcts.py +2060 -0
  41. src/agents/idea_agent/agent/prompts/__init__.py +48 -0
  42. src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
  43. src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
  44. src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
  45. src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
  46. src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
  47. src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
  48. src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
  49. src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
  50. src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
  51. src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
  52. src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
  53. src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
  54. src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
  55. src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
  56. src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
  57. src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
  58. src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
  59. src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
  60. src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
  61. src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
  62. src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
  63. src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
  64. src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
  65. src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
  66. src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
  67. src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
  68. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
  69. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
  70. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
  71. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
  72. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
  73. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
  74. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
  75. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
  76. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
  77. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
  78. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
  79. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
  80. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
  81. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
  82. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
  83. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
  84. src/agents/idea_agent/example/idea_result.json +900 -0
  85. src/agents/idea_agent/run.py +276 -0
  86. src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
  87. src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
  88. src/agents/idea_agent/tests/test_idea_debate.py +480 -0
  89. src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
  90. src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
  91. src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
  92. src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
  93. src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
  94. src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
  95. src/agents/idea_agent/tests/test_result_persistence.py +183 -0
  96. src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
  97. src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
  98. src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
  99. src/agents/idea_agent/utils/core/__init__.py +1 -0
  100. src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
  101. src/agents/idea_agent/utils/core/chat_errors.py +95 -0
  102. src/agents/idea_agent/utils/core/chat_router.py +130 -0
  103. src/agents/idea_agent/utils/core/chat_transport.py +188 -0
  104. src/agents/idea_agent/utils/core/config_loader.py +166 -0
  105. src/agents/idea_agent/utils/core/json_utils.py +28 -0
  106. src/agents/idea_agent/utils/core/logger.py +287 -0
  107. src/agents/idea_agent/utils/core/progress.py +58 -0
  108. src/agents/idea_agent/utils/core/response_parsing.py +57 -0
  109. src/agents/idea_agent/utils/core/run_inputs.py +198 -0
  110. src/agents/idea_agent/utils/mcts/__init__.py +1 -0
  111. src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
  112. src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
  113. src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
  114. src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
  115. src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
  116. src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
  117. src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
  118. src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
  119. src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
  120. src/agents/idea_agent/utils/papers/__init__.py +1 -0
  121. src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
  122. src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
  123. src/agents/idea_agent/utils/prompting/__init__.py +1 -0
  124. src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
  125. src/agents/idea_agent/utils/workflow/__init__.py +1 -0
  126. src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
  127. src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
  128. src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
  129. src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
  130. src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
  131. src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
  132. src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
  133. src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
  134. src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
  135. src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
  136. src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
  137. src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
  138. src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
  139. src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
  140. src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
  141. src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
  142. src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
  143. src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
  144. src/agents/research_plan_author/__init__.py +50 -0
  145. src/agents/research_plan_author/artifacts.py +270 -0
  146. src/agents/research_plan_author/authoring_blueprint.py +1246 -0
  147. src/agents/research_plan_author/bibtex_renderer.py +252 -0
  148. src/agents/research_plan_author/contract_repair.py +131 -0
  149. src/agents/research_plan_author/contracts.py +745 -0
  150. src/agents/research_plan_author/cross_section_editor.py +232 -0
  151. src/agents/research_plan_author/document_quality.py +987 -0
  152. src/agents/research_plan_author/idea_evolution.py +223 -0
  153. src/agents/research_plan_author/input_loader.py +76 -0
  154. src/agents/research_plan_author/latex_compiler.py +260 -0
  155. src/agents/research_plan_author/latex_safety.py +159 -0
  156. src/agents/research_plan_author/llm_json.py +74 -0
  157. src/agents/research_plan_author/markdown_renderer.py +275 -0
  158. src/agents/research_plan_author/pdf_validator.py +149 -0
  159. src/agents/research_plan_author/render.py +166 -0
  160. src/agents/research_plan_author/render_artifacts.py +187 -0
  161. src/agents/research_plan_author/run.py +765 -0
  162. src/agents/research_plan_author/run_logging.py +209 -0
  163. src/agents/research_plan_author/section_cache.py +184 -0
  164. src/agents/research_plan_author/section_composer.py +1764 -0
  165. src/agents/research_plan_author/section_router.py +209 -0
  166. src/agents/research_plan_author/semantic_validator.py +254 -0
  167. src/agents/research_plan_author/source_bundle.py +46 -0
  168. src/agents/research_plan_author/source_registry.py +208 -0
  169. src/agents/research_plan_author/survey_source_loader.py +137 -0
  170. src/agents/research_plan_author/template_adapter.py +173 -0
  171. src/agents/research_plan_author/template_profile.py +204 -0
  172. src/agents/research_plan_author/tex_renderer.py +496 -0
  173. src/agents/research_plan_author/theory_presentation.py +134 -0
  174. src/agents/research_plan_author/theory_spine.py +703 -0
  175. src/agents/survey_agent/Dockerfile +54 -0
  176. src/agents/survey_agent/README.md +350 -0
  177. src/agents/survey_agent/config/deep_survey.yaml +217 -0
  178. src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
  179. src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
  180. src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
  181. src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
  182. src/agents/survey_agent/env_report.md +348 -0
  183. src/agents/survey_agent/modules/__init__.py +0 -0
  184. src/agents/survey_agent/modules/code_collector.py +2194 -0
  185. src/agents/survey_agent/modules/code_report_generator.py +1282 -0
  186. src/agents/survey_agent/modules/data_manager.py +1713 -0
  187. src/agents/survey_agent/modules/database.py +167 -0
  188. src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
  189. src/agents/survey_agent/modules/fulltext_http.py +134 -0
  190. src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
  191. src/agents/survey_agent/modules/judge.py +434 -0
  192. src/agents/survey_agent/modules/outcome_RAG.py +236 -0
  193. src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
  194. src/agents/survey_agent/modules/pe.py +1729 -0
  195. src/agents/survey_agent/modules/pseudo_creator.py +782 -0
  196. src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
  197. src/agents/survey_agent/modules/refine_agent.py +1952 -0
  198. src/agents/survey_agent/modules/survey_generator.py +5691 -0
  199. src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
  200. src/agents/survey_agent/modules/visual_prompts.py +327 -0
  201. src/agents/survey_agent/modules/work_analyzer.py +2750 -0
  202. src/agents/survey_agent/modules/work_collector.py +5649 -0
  203. src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
  204. src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
  205. src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
  206. src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
  207. src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
  208. src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
  209. src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
  210. src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
  211. src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
  212. src/agents/survey_agent/utils/__init__.py +0 -0
  213. src/agents/survey_agent/utils/ablation_utils.py +317 -0
  214. src/agents/survey_agent/utils/api_call.py +2518 -0
  215. src/agents/survey_agent/utils/chat_utils.py +82 -0
  216. src/agents/survey_agent/utils/config_utils.py +70 -0
  217. src/agents/survey_agent/utils/convert_to_md.py +29 -0
  218. src/agents/survey_agent/utils/err_info.py +24 -0
  219. src/agents/survey_agent/utils/file_utils.py +176 -0
  220. src/agents/survey_agent/utils/gpu_utils.py +145 -0
  221. src/agents/survey_agent/utils/graph_visualizer.py +279 -0
  222. src/agents/survey_agent/utils/html_utils.py +181 -0
  223. src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
  224. src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
  225. src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
  226. src/agents/survey_agent/utils/mineru_utils.py +396 -0
  227. src/agents/survey_agent/utils/paper.py +144 -0
  228. src/agents/survey_agent/utils/read_yaml.py +15 -0
  229. src/agents/survey_agent/utils/repo_utils.py +167 -0
  230. src/agents/survey_agent/utils/rich_logger.py +77 -0
  231. src/agents/survey_agent/utils/step2v2.py +874 -0
  232. src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
  233. src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
  234. src/agents/survey_agent/utils/utils.py +118 -0
  235. src/agents/survey_agent/utils/work.py +2 -0
  236. src/cli.py +1611 -0
  237. src/config/__init__.py +213 -0
  238. src/config/default.yaml +1122 -0
  239. src/harness/LICENSE +21 -0
  240. src/harness/VENDORED.md +14 -0
  241. src/harness/src/__init__.py +0 -0
  242. src/harness/src/openharness/__init__.py +0 -0
  243. src/harness/src/openharness/__main__.py +6 -0
  244. src/harness/src/openharness/api/__init__.py +21 -0
  245. src/harness/src/openharness/api/client.py +281 -0
  246. src/harness/src/openharness/api/codex_client.py +407 -0
  247. src/harness/src/openharness/api/copilot_auth.py +240 -0
  248. src/harness/src/openharness/api/copilot_client.py +134 -0
  249. src/harness/src/openharness/api/errors.py +19 -0
  250. src/harness/src/openharness/api/openai_client.py +577 -0
  251. src/harness/src/openharness/api/provider.py +186 -0
  252. src/harness/src/openharness/api/registry.py +437 -0
  253. src/harness/src/openharness/api/usage.py +17 -0
  254. src/harness/src/openharness/auth/__init__.py +29 -0
  255. src/harness/src/openharness/auth/external.py +610 -0
  256. src/harness/src/openharness/auth/flows.py +189 -0
  257. src/harness/src/openharness/auth/manager.py +482 -0
  258. src/harness/src/openharness/auth/storage.py +269 -0
  259. src/harness/src/openharness/autopilot/__init__.py +23 -0
  260. src/harness/src/openharness/autopilot/service.py +2239 -0
  261. src/harness/src/openharness/autopilot/types.py +91 -0
  262. src/harness/src/openharness/bridge/__init__.py +20 -0
  263. src/harness/src/openharness/bridge/manager.py +106 -0
  264. src/harness/src/openharness/bridge/session_runner.py +46 -0
  265. src/harness/src/openharness/bridge/types.py +37 -0
  266. src/harness/src/openharness/bridge/work_secret.py +41 -0
  267. src/harness/src/openharness/channels/UPSTREAM +6 -0
  268. src/harness/src/openharness/channels/__init__.py +22 -0
  269. src/harness/src/openharness/channels/adapter.py +131 -0
  270. src/harness/src/openharness/channels/bus/__init__.py +6 -0
  271. src/harness/src/openharness/channels/bus/events.py +38 -0
  272. src/harness/src/openharness/channels/bus/queue.py +44 -0
  273. src/harness/src/openharness/channels/impl/__init__.py +6 -0
  274. src/harness/src/openharness/channels/impl/base.py +141 -0
  275. src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
  276. src/harness/src/openharness/channels/impl/discord.py +311 -0
  277. src/harness/src/openharness/channels/impl/email.py +410 -0
  278. src/harness/src/openharness/channels/impl/feishu.py +1342 -0
  279. src/harness/src/openharness/channels/impl/manager.py +257 -0
  280. src/harness/src/openharness/channels/impl/matrix.py +700 -0
  281. src/harness/src/openharness/channels/impl/mochat.py +897 -0
  282. src/harness/src/openharness/channels/impl/qq.py +141 -0
  283. src/harness/src/openharness/channels/impl/slack.py +284 -0
  284. src/harness/src/openharness/channels/impl/telegram.py +525 -0
  285. src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
  286. src/harness/src/openharness/cli.py +2551 -0
  287. src/harness/src/openharness/commands/__init__.py +21 -0
  288. src/harness/src/openharness/commands/registry.py +2783 -0
  289. src/harness/src/openharness/config/__init__.py +34 -0
  290. src/harness/src/openharness/config/paths.py +160 -0
  291. src/harness/src/openharness/config/schema.py +119 -0
  292. src/harness/src/openharness/config/settings.py +1104 -0
  293. src/harness/src/openharness/coordinator/__init__.py +12 -0
  294. src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
  295. src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
  296. src/harness/src/openharness/engine/__init__.py +80 -0
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  466. src/harness/src/openharness/ui/react_launcher.py +179 -0
  467. src/harness/src/openharness/ui/runtime.py +799 -0
  468. src/harness/src/openharness/ui/textual_app.py +495 -0
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  473. src/harness/src/openharness/utils/network_guard.py +340 -0
  474. src/harness/src/openharness/utils/shell.py +147 -0
  475. src/harness/src/openharness/vim/__init__.py +5 -0
  476. src/harness/src/openharness/vim/transitions.py +8 -0
  477. src/harness/src/openharness/voice/__init__.py +7 -0
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  483. src/llm/provider_registry.py +419 -0
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  486. src/llm/vision.py +198 -0
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  492. src/memory/api/faiss_memory_system_api.py +228 -0
  493. src/memory/api/slot_process_api.py +827 -0
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  497. src/memory/memory_system/llm.py +437 -0
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  499. src/memory/memory_system/user_prompt.py +418 -0
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  506. src/pipeline/evidence_coverage_ledger.py +1150 -0
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  511. src/pipeline/multimodal_evidence/claims.py +135 -0
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  513. src/pipeline/multimodal_evidence/data_sh_compiler.py +505 -0
  514. src/pipeline/multimodal_evidence/handoff_binding.py +135 -0
  515. src/pipeline/multimodal_evidence/manifest.py +254 -0
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  520. src/pipeline/multimodal_evidence/safety.py +42 -0
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  522. src/pipeline/multimodal_evidence/service.py +148 -0
  523. src/pipeline/multimodal_evidence/survey_integration.py +460 -0
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  530. src/pipeline/run_loop.py +862 -0
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  533. src/pipeline/science_run.py +918 -0
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  535. src/pipeline/science_workflow.py +807 -0
  536. src/pipeline/sh_cluster_projection.py +306 -0
  537. src/pipeline/sh_graph_provenance.py +648 -0
  538. src/pipeline/subhypothesis_decomposition.py +392 -0
  539. src/pipeline/subhypothesis_evidence.py +856 -0
  540. src/pipeline/survey_evidence_plan.py +858 -0
  541. src/pipeline/survey_gap_adjudication.py +647 -0
  542. src/pipeline/survey_gap_candidates.py +840 -0
  543. src/pipeline/survey_gap_ledger.py +683 -0
  544. src/pipeline/survey_gap_triage.py +401 -0
  545. src/pipeline/survey_handoff_persistence.py +481 -0
  546. src/pipeline/survey_handoff_projection.py +457 -0
  547. src/pipeline/survey_idea_handoff.py +1112 -0
  548. src/pipeline/survey_idea_loader.py +289 -0
  549. src/research_run_ids.py +11 -0
@@ -0,0 +1,287 @@
1
+ """Logging setup helpers for Idea Agent console and file output."""
2
+
3
+ from contextlib import contextmanager
4
+ from datetime import datetime
5
+ import logging
6
+ import os
7
+ from pathlib import Path
8
+ import sys
9
+ from typing import Dict, Iterator, Optional
10
+
11
+ from loguru import logger as _loguru_logger
12
+
13
+
14
+ _LOGGER_NAME = "LigAgent"
15
+ _MANAGED_LOGGER_PREFIX = "LigAgent"
16
+ _DEFAULT_LOG_DIR = os.path.join(os.path.dirname(os.path.abspath(__file__)), "..", "..", "logs")
17
+ _DEFAULT_LOG_DIR = os.path.normpath(_DEFAULT_LOG_DIR)
18
+ _DEFAULT_LOG_FILE = "ligagent.log"
19
+ _FILE_LOG_FORMAT = "{time:YYYY-MM-DD HH:mm:ss.SSS} | {level:<8} | {extra[logger_name]} | {message}"
20
+ _CONSOLE_LOG_FORMAT = (
21
+ "<green>{time:YYYY-MM-DD HH:mm:ss.SSS}</green> | "
22
+ "<level>{level:<8}</level> | "
23
+ "<cyan>{extra[logger_name]}</cyan> | "
24
+ "<level>{message}</level>"
25
+ )
26
+ _logger: Optional["LoguruCompatLogger"] = None
27
+ _loguru_runtime_ready = False
28
+ _fallback_sink_id: Optional[int] = None
29
+
30
+
31
+ def _normalize_level(level: int | str) -> str:
32
+ if isinstance(level, str):
33
+ text = level.strip().upper()
34
+ return text or "INFO"
35
+ if level >= logging.CRITICAL:
36
+ return "CRITICAL"
37
+ if level >= logging.ERROR:
38
+ return "ERROR"
39
+ if level >= logging.WARNING:
40
+ return "WARNING"
41
+ if level >= logging.INFO:
42
+ return "INFO"
43
+ if level >= logging.DEBUG:
44
+ return "DEBUG"
45
+ return "TRACE"
46
+
47
+
48
+ def _ensure_loguru_runtime() -> None:
49
+ global _fallback_sink_id, _loguru_runtime_ready
50
+ if _loguru_runtime_ready:
51
+ return
52
+ try:
53
+ _loguru_logger.remove(0)
54
+ except Exception:
55
+ pass
56
+ if _fallback_sink_id is None:
57
+ _fallback_sink_id = _loguru_logger.add(
58
+ sys.stderr,
59
+ level="DEBUG",
60
+ format=_CONSOLE_LOG_FORMAT,
61
+ colorize=True,
62
+ enqueue=True,
63
+ filter=lambda record: not str(record["extra"].get("logger_name", "")).startswith(
64
+ _MANAGED_LOGGER_PREFIX
65
+ ),
66
+ )
67
+ _loguru_runtime_ready = True
68
+
69
+
70
+ class LoguruCompatLogger:
71
+ """A small loguru-backed logger that preserves stdlib `%`-style call sites."""
72
+
73
+ def __init__(self, name: str, *, level: int | str = logging.INFO) -> None:
74
+ self.name = name
75
+ self.level = _normalize_level(level)
76
+ self._bound_logger = _loguru_logger.bind(logger_name=name)
77
+ self._desired_file_paths: list[str] = []
78
+ self._include_console = False
79
+ self._file_sink_ids: list[int] = []
80
+ self._console_sink_ids: list[int] = []
81
+ self._console_suspend_depth = 0
82
+
83
+ def setLevel(self, level: int | str) -> None:
84
+ normalized = _normalize_level(level)
85
+ if normalized == self.level:
86
+ return
87
+ self.level = normalized
88
+ if self.has_sinks():
89
+ self._rebuild_sinks()
90
+
91
+ def has_sinks(self) -> bool:
92
+ return bool(self._desired_file_paths or self._include_console)
93
+
94
+ def configure_sinks(
95
+ self,
96
+ *,
97
+ file_paths: list[str] | None = None,
98
+ include_console: bool | None = None,
99
+ ) -> None:
100
+ if file_paths is not None:
101
+ self._desired_file_paths = [str(Path(path)) for path in file_paths]
102
+ if include_console is not None:
103
+ self._include_console = bool(include_console)
104
+ self._rebuild_sinks()
105
+
106
+ def clear_sinks(self) -> None:
107
+ self._remove_sink_ids()
108
+ self._desired_file_paths = []
109
+ self._include_console = False
110
+
111
+ def _record_matches(self, record: dict) -> bool:
112
+ return record["extra"].get("logger_name") == self.name
113
+
114
+ def _console_filter(self, record: dict) -> bool:
115
+ return self._record_matches(record) and self._console_suspend_depth == 0
116
+
117
+ def _remove_sink_ids(self) -> None:
118
+ for sink_id in [*self._file_sink_ids, *self._console_sink_ids]:
119
+ try:
120
+ _loguru_logger.remove(sink_id)
121
+ except Exception:
122
+ pass
123
+ self._file_sink_ids.clear()
124
+ self._console_sink_ids.clear()
125
+
126
+ def _rebuild_sinks(self) -> None:
127
+ self._remove_sink_ids()
128
+ if not self.has_sinks():
129
+ return
130
+ _ensure_loguru_runtime()
131
+ for path in self._desired_file_paths:
132
+ sink_id = _loguru_logger.add(
133
+ path,
134
+ level=self.level,
135
+ format=_FILE_LOG_FORMAT,
136
+ rotation="5 MB",
137
+ retention=5,
138
+ encoding="utf-8",
139
+ enqueue=True,
140
+ filter=self._record_matches,
141
+ )
142
+ self._file_sink_ids.append(sink_id)
143
+ if self._include_console:
144
+ sink_id = _loguru_logger.add(
145
+ sys.stderr,
146
+ level=self.level,
147
+ format=_CONSOLE_LOG_FORMAT,
148
+ colorize=True,
149
+ enqueue=True,
150
+ filter=self._console_filter,
151
+ )
152
+ self._console_sink_ids.append(sink_id)
153
+
154
+ def _format_message(self, message: object, args: tuple[object, ...]) -> str:
155
+ text = str(message)
156
+ if not args:
157
+ return text
158
+ try:
159
+ return text % args
160
+ except Exception:
161
+ return f"{text} | args={args!r}"
162
+
163
+ def log(self, level: int | str, message: object, *args: object) -> None:
164
+ if not self.has_sinks():
165
+ return
166
+ _ensure_loguru_runtime()
167
+ self._bound_logger.log(_normalize_level(level), self._format_message(message, args))
168
+
169
+ def debug(self, message: object, *args: object) -> None:
170
+ self.log("DEBUG", message, *args)
171
+
172
+ def info(self, message: object, *args: object) -> None:
173
+ self.log("INFO", message, *args)
174
+
175
+ def warning(self, message: object, *args: object) -> None:
176
+ self.log("WARNING", message, *args)
177
+
178
+ def error(self, message: object, *args: object) -> None:
179
+ self.log("ERROR", message, *args)
180
+
181
+ def critical(self, message: object, *args: object) -> None:
182
+ self.log("CRITICAL", message, *args)
183
+
184
+ def exception(self, message: object, *args: object) -> None:
185
+ if not self.has_sinks():
186
+ return
187
+ _ensure_loguru_runtime()
188
+ self._bound_logger.opt(exception=True).error(self._format_message(message, args))
189
+
190
+ @contextmanager
191
+ def suspend_console(self) -> Iterator[None]:
192
+ self._console_suspend_depth += 1
193
+ try:
194
+ yield
195
+ finally:
196
+ self._console_suspend_depth = max(0, self._console_suspend_depth - 1)
197
+
198
+
199
+ def init_logger(
200
+ log_dir: Optional[str] = None,
201
+ filename: str = _DEFAULT_LOG_FILE,
202
+ level: int = logging.DEBUG,
203
+ include_console: bool = True,
204
+ include_timestamp: bool = True,
205
+ timestamp_format: str = "%Y%m%d_%H%M%S",
206
+ force_reinit: bool = False,
207
+ ) -> LoguruCompatLogger:
208
+ """
209
+ Initialize or re-configure the process-wide logger.
210
+ - Rotating file sink (5MB, 5 backups)
211
+ - Optional console sink
212
+ - Optional timestamp appended to filename (before file extension)
213
+ - Set force_reinit=True to rebuild sinks even if the logger already exists.
214
+ """
215
+ global _logger
216
+ logger = _logger or LoguruCompatLogger(_LOGGER_NAME, level=level)
217
+ logger.setLevel(level)
218
+
219
+ if force_reinit or not logger.has_sinks():
220
+ resolved_log_dir = log_dir or _DEFAULT_LOG_DIR
221
+ os.makedirs(resolved_log_dir, exist_ok=True)
222
+
223
+ resolved_filename = filename
224
+ if include_timestamp:
225
+ name, ext = os.path.splitext(filename)
226
+ if not ext:
227
+ ext = ".log"
228
+ ts = datetime.now().strftime(timestamp_format)
229
+ resolved_filename = f"{name}_{ts}{ext}"
230
+
231
+ file_path = os.path.join(resolved_log_dir, resolved_filename)
232
+ logger.configure_sinks(file_paths=[file_path], include_console=include_console)
233
+
234
+ _logger = logger
235
+ return logger
236
+
237
+
238
+ def get_logger() -> LoguruCompatLogger:
239
+ global _logger
240
+ if _logger is None:
241
+ _logger = LoguruCompatLogger(_LOGGER_NAME, level=logging.INFO)
242
+ return _logger
243
+
244
+
245
+ def normalize_mode_log_key(idea_taste_mode: Optional[str]) -> str:
246
+ return str(idea_taste_mode or "default").strip() or "default"
247
+
248
+
249
+ _LEGACY_MODE_TO_ROUTE = {
250
+ "moonshot_inventor": "premise_inversion",
251
+ "bridge_builder": "object_substitution",
252
+ "steady_engineer": "mechanism_replacement",
253
+ "ambitious_realist": "representation_shift",
254
+ "evidence_first": "verification_reversal",
255
+ }
256
+
257
+
258
+ def mode_log_filename(idea_taste_mode: Optional[str]) -> str:
259
+ raw_mode = normalize_mode_log_key(idea_taste_mode).lower()
260
+ route_id = _LEGACY_MODE_TO_ROUTE.get(raw_mode, raw_mode)
261
+ safe_route = "".join(ch if ch.isalnum() else "_" for ch in route_id).strip("_")
262
+ return f"mcts_{safe_route or 'default'}.log"
263
+
264
+
265
+ def get_or_create_mode_logger(
266
+ mode_loggers: Dict[str, LoguruCompatLogger],
267
+ base_logger: LoguruCompatLogger,
268
+ run_dir: Path,
269
+ idea_taste_mode: Optional[str],
270
+ ) -> LoguruCompatLogger:
271
+ mode_key = normalize_mode_log_key(idea_taste_mode)
272
+ existing = mode_loggers.get(mode_key)
273
+ if existing is not None:
274
+ return existing
275
+
276
+ mode_logger = LoguruCompatLogger(f"LigAgent.{mode_key}", level=base_logger.level)
277
+ log_path = run_dir / "logs" / mode_log_filename(idea_taste_mode)
278
+ log_path.parent.mkdir(parents=True, exist_ok=True)
279
+ mode_logger.configure_sinks(file_paths=[str(log_path)], include_console=False)
280
+ mode_loggers[mode_key] = mode_logger
281
+ return mode_logger
282
+
283
+
284
+ @contextmanager
285
+ def suspend_console_handlers(logger: LoguruCompatLogger) -> Iterator[None]:
286
+ with logger.suspend_console():
287
+ yield
@@ -0,0 +1,58 @@
1
+ """Rich progress helpers shared across Idea Agent workflows."""
2
+
3
+ from __future__ import annotations
4
+
5
+ from collections.abc import Iterable, Iterator
6
+ from typing import Optional, TypeVar
7
+
8
+ from rich.console import Console
9
+ from rich.progress import (
10
+ BarColumn,
11
+ MofNCompleteColumn,
12
+ Progress,
13
+ SpinnerColumn,
14
+ TaskProgressColumn,
15
+ TextColumn,
16
+ TimeElapsedColumn,
17
+ TimeRemainingColumn,
18
+ )
19
+
20
+
21
+ T = TypeVar("T")
22
+
23
+ _PROGRESS_CONSOLE = Console(stderr=False)
24
+
25
+
26
+ def create_progress(*, transient: bool = False) -> Progress:
27
+ return Progress(
28
+ SpinnerColumn(style="cyan"),
29
+ TextColumn("[progress.description]{task.description}"),
30
+ BarColumn(),
31
+ TaskProgressColumn(),
32
+ MofNCompleteColumn(),
33
+ TimeElapsedColumn(),
34
+ TimeRemainingColumn(),
35
+ console=_PROGRESS_CONSOLE,
36
+ transient=transient,
37
+ )
38
+
39
+
40
+ def iter_with_progress(
41
+ iterable: Iterable[T],
42
+ *,
43
+ description: str,
44
+ total: Optional[int] = None,
45
+ transient: bool = False,
46
+ ) -> Iterator[T]:
47
+ resolved_total = total
48
+ if resolved_total is None:
49
+ try:
50
+ resolved_total = len(iterable) # type: ignore[arg-type]
51
+ except TypeError:
52
+ resolved_total = None
53
+
54
+ with create_progress(transient=transient) as progress:
55
+ task_id = progress.add_task(description, total=resolved_total)
56
+ for item in iterable:
57
+ yield item
58
+ progress.advance(task_id)
@@ -0,0 +1,57 @@
1
+ """Shared response parsing helpers for Idea Agent LLM outputs."""
2
+
3
+ from __future__ import annotations
4
+
5
+ import json
6
+ from collections.abc import Mapping
7
+ from typing import Any, Dict
8
+
9
+
10
+ class JsonObjectResponseError(ValueError):
11
+ """Raised when a structured stage did not return one JSON object."""
12
+
13
+
14
+ def _strip_json_fence(raw: str) -> str:
15
+ text = (raw or "").strip()
16
+ if text.startswith("```"):
17
+ fence_end = text.find("\n")
18
+ if fence_end != -1:
19
+ text = text[fence_end + 1 :]
20
+ if text.endswith("```"):
21
+ text = text[: -3]
22
+ return text.strip()
23
+
24
+
25
+ def parse_json_response(raw: str) -> Any:
26
+ text = _strip_json_fence(raw)
27
+ if not text:
28
+ raise ValueError("Empty response")
29
+ try:
30
+ return json.loads(text)
31
+ except json.JSONDecodeError:
32
+ decoder = json.JSONDecoder()
33
+ for idx, ch in enumerate(text):
34
+ if ch in "{[":
35
+ try:
36
+ parsed, _ = decoder.raw_decode(text[idx:])
37
+ return parsed
38
+ except json.JSONDecodeError:
39
+ continue
40
+ raise ValueError(f"Unable to parse JSON from response: {text[:200]}")
41
+
42
+
43
+ def parse_json_object_response(raw: str) -> Dict[str, Any]:
44
+ """Parse exactly one top-level JSON object without permissive fragment recovery."""
45
+
46
+ text = _strip_json_fence(raw)
47
+ if not text:
48
+ raise JsonObjectResponseError("advanced analysis response was empty; expected one JSON object")
49
+ try:
50
+ parsed = json.loads(text)
51
+ except json.JSONDecodeError as exc:
52
+ raise JsonObjectResponseError(
53
+ "advanced analysis response must be one complete JSON object without prose or JSON fragments"
54
+ ) from exc
55
+ if not isinstance(parsed, Mapping):
56
+ raise JsonObjectResponseError("advanced analysis response must be a JSON object")
57
+ return dict(parsed)
@@ -0,0 +1,198 @@
1
+ import os
2
+ import re
3
+ from typing import Any, Dict, Optional
4
+
5
+ from src.agents.idea_agent.agent.base import AgentBase
6
+ from src.agents.idea_agent.agent.prompts.input_interpreter import INPUT_INTERPRETER_PROMPT
7
+ from src.agents.idea_agent.utils.core.config_loader import get_config_value
8
+ from src.agents.idea_agent.utils.core.response_parsing import parse_json_response
9
+ from src.agents.idea_agent.utils.workflow.idea_contract import (
10
+ mature_idea_legacy_text,
11
+ normalize_mature_ideas,
12
+ )
13
+
14
+
15
+ def clean_optional_text(value: Optional[str]) -> str:
16
+ return value.strip() if isinstance(value, str) else ""
17
+
18
+
19
+ def load_topic(topic: Optional[str]) -> str:
20
+ value = topic.strip() if isinstance(topic, str) else ""
21
+ if not value:
22
+ raise ValueError("run.topic must be a non-empty string.")
23
+ return value
24
+
25
+
26
+ def load_run_defaults(config: Optional[object], *, default_output_root: str) -> dict:
27
+ ablation_results_path = clean_optional_text(os.getenv("IDEA_AGENT_ABLATION_RESULTS_PATH"))
28
+ if not ablation_results_path:
29
+ ablation_results_path = clean_optional_text(
30
+ str(get_config_value(config, "run.ablation_results_path", "") or "")
31
+ )
32
+ return {
33
+ "input": get_config_value(config, "run.input", ""),
34
+ "topic": get_config_value(config, "run.topic", ""),
35
+ "mature_idea": get_config_value(config, "run.mature_idea", ""),
36
+ "mature_ideas": get_config_value(config, "run.mature_ideas", []),
37
+ "refinement_scope": get_config_value(config, "run.refinement_scope", ""),
38
+ "survey_manifest": clean_optional_text(
39
+ os.getenv("IDEA_AGENT_SURVEY_MANIFEST")
40
+ or str(get_config_value(config, "run.survey_manifest", "") or "")
41
+ ),
42
+ "ablation_results_path": ablation_results_path,
43
+ "output_root": get_config_value(config, "run.output_root", default_output_root),
44
+ "console_logs": get_config_value(config, "run.console_logs", False),
45
+ "rag_config": get_config_value(
46
+ config,
47
+ "run.rag_config",
48
+ "src/config/default.yaml",
49
+ ),
50
+ }
51
+
52
+
53
+ def _normalize_interpreter_source(value: Optional[str], *, allow_empty: bool = False) -> str:
54
+ cleaned = clean_optional_text(value).lower()
55
+ allowed = {"explicit", "inferred"}
56
+ if allow_empty:
57
+ allowed.add("empty")
58
+ return cleaned if cleaned in allowed else ("empty" if allow_empty else "inferred")
59
+
60
+
61
+ def _fallback_topic_from_input(input_text: str) -> str:
62
+ candidate = re.split(r"(?<=[.!?])\s+", input_text.strip(), maxsplit=1)[0].strip()
63
+ words = candidate.split()
64
+ if len(words) > 12:
65
+ candidate = " ".join(words[:12])
66
+ return candidate or "unspecified topic"
67
+
68
+
69
+ def _interpret_input_text(input_text: str, config: Optional[object]) -> Dict[str, object]:
70
+ normalized_input = clean_optional_text(input_text)
71
+ if not normalized_input:
72
+ return {
73
+ "topic": "",
74
+ "topic_source": "empty",
75
+ "mature_idea": "",
76
+ "mature_ideas": [],
77
+ "mature_idea_source": "empty",
78
+ "refinement_scope": "",
79
+ "refinement_scope_source": "empty",
80
+ "needs_grounding": True,
81
+ }
82
+
83
+ model = (
84
+ clean_optional_text(get_config_value(config, "run.input_interpreter_model", ""))
85
+ or clean_optional_text(get_config_value(config, "agent.model", ""))
86
+ or None
87
+ )
88
+ prompt = INPUT_INTERPRETER_PROMPT.format(input_text=normalized_input)
89
+ agent = AgentBase()
90
+ try:
91
+ response = agent.chat(prompt, model=model, temperature=0.1, max_output_tokens=4096)
92
+ payload = parse_json_response(response)
93
+ except Exception:
94
+ return {
95
+ "topic": _fallback_topic_from_input(normalized_input),
96
+ "topic_source": "inferred",
97
+ "mature_idea": "",
98
+ "mature_ideas": [],
99
+ "mature_idea_source": "empty",
100
+ "refinement_scope": "",
101
+ "refinement_scope_source": "empty",
102
+ "needs_grounding": True,
103
+ }
104
+
105
+ topic = clean_optional_text(payload.get("topic") if isinstance(payload, dict) else "")
106
+ if not topic:
107
+ topic = _fallback_topic_from_input(normalized_input)
108
+ interpreted_ideas = normalize_mature_ideas(
109
+ payload.get("mature_ideas") if isinstance(payload, dict) else [],
110
+ legacy_value=payload.get("mature_idea") if isinstance(payload, dict) else "",
111
+ default_source="input_interpreted",
112
+ )
113
+ return {
114
+ "topic": topic,
115
+ "topic_source": _normalize_interpreter_source(
116
+ payload.get("topic_source") if isinstance(payload, dict) else None
117
+ ),
118
+ "mature_idea": clean_optional_text(payload.get("mature_idea") if isinstance(payload, dict) else ""),
119
+ "mature_ideas": interpreted_ideas,
120
+ "mature_idea_source": _normalize_interpreter_source(
121
+ payload.get("mature_idea_source") if isinstance(payload, dict) else None,
122
+ allow_empty=True,
123
+ ),
124
+ "refinement_scope": clean_optional_text(
125
+ payload.get("refinement_scope") if isinstance(payload, dict) else ""
126
+ ),
127
+ "refinement_scope_source": _normalize_interpreter_source(
128
+ payload.get("refinement_scope_source") if isinstance(payload, dict) else None,
129
+ allow_empty=True,
130
+ ),
131
+ "needs_grounding": bool(payload.get("needs_grounding")) if isinstance(payload, dict) else True,
132
+ }
133
+
134
+
135
+ def resolve_run_inputs(config: Optional[object], *, default_output_root: str) -> Dict[str, object]:
136
+ defaults = load_run_defaults(config, default_output_root=default_output_root)
137
+ input_text = clean_optional_text(defaults["input"])
138
+ explicit_topic = clean_optional_text(defaults["topic"])
139
+ explicit_mature_idea = clean_optional_text(defaults["mature_idea"])
140
+ explicit_mature_ideas = normalize_mature_ideas(
141
+ defaults.get("mature_ideas"),
142
+ legacy_value=explicit_mature_idea,
143
+ default_source="config_explicit",
144
+ )
145
+ explicit_refinement_scope = clean_optional_text(defaults["refinement_scope"])
146
+ interpreted = (
147
+ _interpret_input_text(input_text, config)
148
+ if input_text and (not explicit_topic or not explicit_mature_ideas or not explicit_refinement_scope)
149
+ else {
150
+ "topic": "",
151
+ "topic_source": "empty",
152
+ "mature_idea": "",
153
+ "mature_ideas": [],
154
+ "mature_idea_source": "empty",
155
+ "refinement_scope": "",
156
+ "refinement_scope_source": "empty",
157
+ "needs_grounding": True,
158
+ }
159
+ )
160
+
161
+ topic = explicit_topic or clean_optional_text(str(interpreted.get("topic") or ""))
162
+ if not topic and not clean_optional_text(str(defaults.get("survey_manifest") or "")):
163
+ raise ValueError("run.topic must be non-empty, or run.input must contain an interpretable topic.")
164
+
165
+ interpreted_ideas = normalize_mature_ideas(
166
+ interpreted.get("mature_ideas"),
167
+ legacy_value=interpreted.get("mature_idea"),
168
+ default_source="input_interpreted",
169
+ )
170
+ mature_ideas = explicit_mature_ideas or interpreted_ideas
171
+ mature_idea = explicit_mature_idea or mature_idea_legacy_text(mature_ideas)
172
+ refinement_scope = explicit_refinement_scope or clean_optional_text(
173
+ str(interpreted.get("refinement_scope") or "")
174
+ )
175
+ interpreted_topic_source = str(interpreted.get("topic_source") or "inferred")
176
+ interpreted_mature_source = str(interpreted.get("mature_idea_source") or "empty")
177
+ interpreted_scope_source = str(interpreted.get("refinement_scope_source") or "empty")
178
+ return {
179
+ **defaults,
180
+ "topic": topic,
181
+ "mature_idea": mature_idea,
182
+ "mature_ideas": mature_ideas,
183
+ "refinement_scope": refinement_scope,
184
+ "ablation_results_path": clean_optional_text(str(defaults.get("ablation_results_path") or "")),
185
+ "input_text": input_text,
186
+ "topic_source": "config_explicit" if explicit_topic else f"input_{interpreted_topic_source}",
187
+ "mature_idea_source": (
188
+ "config_explicit"
189
+ if explicit_mature_idea or explicit_mature_ideas
190
+ else ("empty" if interpreted_mature_source == "empty" else f"input_{interpreted_mature_source}")
191
+ ),
192
+ "refinement_scope_source": (
193
+ "config_explicit"
194
+ if explicit_refinement_scope
195
+ else ("empty" if interpreted_scope_source == "empty" else f"input_{interpreted_scope_source}")
196
+ ),
197
+ "needs_grounding": bool(interpreted.get("needs_grounding", True)),
198
+ }
@@ -0,0 +1 @@
1
+ """Monte Carlo Tree Search support utilities for Idea Agent."""