qwen-sci 0.2.2__py3-none-any.whl

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Files changed (549) hide show
  1. qwen_sci-0.2.2.dist-info/METADATA +492 -0
  2. qwen_sci-0.2.2.dist-info/RECORD +549 -0
  3. qwen_sci-0.2.2.dist-info/WHEEL +4 -0
  4. qwen_sci-0.2.2.dist-info/entry_points.txt +6 -0
  5. qwen_sci-0.2.2.dist-info/licenses/LICENSE +21 -0
  6. src/1.txt +1 -0
  7. src/__init__.py +1 -0
  8. src/__main__.py +5 -0
  9. src/agents/__init__.py +1 -0
  10. src/agents/experiment_design_agent/__init__.py +268 -0
  11. src/agents/experiment_design_agent/artifacts.py +747 -0
  12. src/agents/experiment_design_agent/cache.py +319 -0
  13. src/agents/experiment_design_agent/completeness.py +130 -0
  14. src/agents/experiment_design_agent/contracts.py +771 -0
  15. src/agents/experiment_design_agent/counterexample_analyzer.py +187 -0
  16. src/agents/experiment_design_agent/design_evidence_paper_screener.py +470 -0
  17. src/agents/experiment_design_agent/discipline_catalog.py +178 -0
  18. src/agents/experiment_design_agent/evidence_cards.py +338 -0
  19. src/agents/experiment_design_agent/evidence_planner.py +452 -0
  20. src/agents/experiment_design_agent/formal_reasoning_planner.py +884 -0
  21. src/agents/experiment_design_agent/fulltext_acquisition.py +863 -0
  22. src/agents/experiment_design_agent/idea_adapter.py +100 -0
  23. src/agents/experiment_design_agent/idea_intake.py +87 -0
  24. src/agents/experiment_design_agent/llm_json.py +328 -0
  25. src/agents/experiment_design_agent/orchestrator.py +1220 -0
  26. src/agents/experiment_design_agent/reasoning_context.py +183 -0
  27. src/agents/experiment_design_agent/reasoning_validation.py +546 -0
  28. src/agents/experiment_design_agent/run.py +481 -0
  29. src/agents/experiment_design_agent/run_logging.py +292 -0
  30. src/agents/experiment_design_agent/scope_gate.py +198 -0
  31. src/agents/experiment_design_agent/study_type_composer.py +1360 -0
  32. src/agents/experiment_design_agent/survey_evidence.py +1381 -0
  33. src/agents/experiment_design_agent/template_router.py +195 -0
  34. src/agents/experiment_design_agent/variable_claim_extractor.py +93 -0
  35. src/agents/idea_agent/__init__.py +1 -0
  36. src/agents/idea_agent/agent/__init__.py +6 -0
  37. src/agents/idea_agent/agent/artifacts.py +308 -0
  38. src/agents/idea_agent/agent/base.py +122 -0
  39. src/agents/idea_agent/agent/ligagent.py +488 -0
  40. src/agents/idea_agent/agent/mcts.py +2060 -0
  41. src/agents/idea_agent/agent/prompts/__init__.py +48 -0
  42. src/agents/idea_agent/agent/prompts/advanced_analysis.py +235 -0
  43. src/agents/idea_agent/agent/prompts/algorithm_alignment.py +55 -0
  44. src/agents/idea_agent/agent/prompts/algorithm_structuring.py +48 -0
  45. src/agents/idea_agent/agent/prompts/component_extraction.py +62 -0
  46. src/agents/idea_agent/agent/prompts/component_novelty_evaluation.py +54 -0
  47. src/agents/idea_agent/agent/prompts/experiment_findings_extraction.py +39 -0
  48. src/agents/idea_agent/agent/prompts/idea_fusion.py +295 -0
  49. src/agents/idea_agent/agent/prompts/idea_introduction.py +30 -0
  50. src/agents/idea_agent/agent/prompts/idea_result_alignment.py +39 -0
  51. src/agents/idea_agent/agent/prompts/input_interpreter.py +52 -0
  52. src/agents/idea_agent/agent/prompts/keynote_ops.py +78 -0
  53. src/agents/idea_agent/agent/prompts/mcts_evaluation.py +235 -0
  54. src/agents/idea_agent/agent/prompts/mcts_generation.py +140 -0
  55. src/agents/idea_agent/agent/prompts/mechanism_commit_query.py +99 -0
  56. src/agents/idea_agent/agent/prompts/memory_selection.py +0 -0
  57. src/agents/idea_agent/agent/prompts/prompt_modes.py +16 -0
  58. src/agents/idea_agent/agent/prompts/rag_query.py +34 -0
  59. src/agents/idea_agent/agent/prompts/re_analysis_replan.py +48 -0
  60. src/agents/idea_agent/agent/prompts/reference_grounding.py +34 -0
  61. src/agents/idea_agent/agent/prompts/root_domain_classification.py +32 -0
  62. src/agents/idea_agent/agent/prompts/scientific_debate.py +88 -0
  63. src/agents/idea_agent/agent/prompts/scientific_materialization.py +45 -0
  64. src/agents/idea_agent/agent/prompts/skill_instantiation.py +193 -0
  65. src/agents/idea_agent/agent/prompts/theory_transfer_query.py +93 -0
  66. src/agents/idea_agent/agent/prompts/topic_background.py +15 -0
  67. src/agents/idea_agent/agent/skills/DEFAULT_SKILL_TEMPLATES.json +263 -0
  68. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/SKILL.md +40 -0
  69. src/agents/idea_agent/agent/skills/edit_operator_skills/alternative-path-contrast/references/contrast_patterns.md +22 -0
  70. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/SKILL.md +40 -0
  71. src/agents/idea_agent/agent/skills/edit_operator_skills/feedback-closed-loop/references/mechanism_cards.md +24 -0
  72. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/SKILL.md +39 -0
  73. src/agents/idea_agent/agent/skills/edit_operator_skills/hierarchical-decomposition/references/hierarchy_patterns.md +22 -0
  74. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/SKILL.md +39 -0
  75. src/agents/idea_agent/agent/skills/edit_operator_skills/mechanism-commit-innovation/references/mechanism_commit_patterns.md +24 -0
  76. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/SKILL.md +39 -0
  77. src/agents/idea_agent/agent/skills/edit_operator_skills/multi-scale-coordinator/references/coordination_patterns.md +22 -0
  78. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/SKILL.md +41 -0
  79. src/agents/idea_agent/agent/skills/edit_operator_skills/speculative-execution-with-repair/references/speculation_patterns.md +22 -0
  80. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/SKILL.md +39 -0
  81. src/agents/idea_agent/agent/skills/edit_operator_skills/surgical-modularity/references/modularity_patterns.md +22 -0
  82. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/SKILL.md +40 -0
  83. src/agents/idea_agent/agent/skills/edit_operator_skills/theory-transfer-injection/references/transfer_patterns.md +24 -0
  84. src/agents/idea_agent/example/idea_result.json +900 -0
  85. src/agents/idea_agent/run.py +276 -0
  86. src/agents/idea_agent/tests/test_advanced_analysis_contract.py +90 -0
  87. src/agents/idea_agent/tests/test_gap_hypothesis_bridge.py +166 -0
  88. src/agents/idea_agent/tests/test_idea_debate.py +480 -0
  89. src/agents/idea_agent/tests/test_idea_result_v5.py +99 -0
  90. src/agents/idea_agent/tests/test_idea_synthesis.py +92 -0
  91. src/agents/idea_agent/tests/test_mature_idea_sources.py +27 -0
  92. src/agents/idea_agent/tests/test_multimodal_idea_integration.py +386 -0
  93. src/agents/idea_agent/tests/test_profile_materialization_and_scoring.py +219 -0
  94. src/agents/idea_agent/tests/test_profile_native_skill_rendering.py +122 -0
  95. src/agents/idea_agent/tests/test_result_persistence.py +183 -0
  96. src/agents/idea_agent/tests/test_scientific_intervention_profiles.py +241 -0
  97. src/agents/idea_agent/tests/test_scientific_rubric_and_prompts.py +559 -0
  98. src/agents/idea_agent/tests/test_strict_json_object_responses.py +48 -0
  99. src/agents/idea_agent/utils/core/__init__.py +1 -0
  100. src/agents/idea_agent/utils/core/ablation_inputs.py +60 -0
  101. src/agents/idea_agent/utils/core/chat_errors.py +95 -0
  102. src/agents/idea_agent/utils/core/chat_router.py +130 -0
  103. src/agents/idea_agent/utils/core/chat_transport.py +188 -0
  104. src/agents/idea_agent/utils/core/config_loader.py +166 -0
  105. src/agents/idea_agent/utils/core/json_utils.py +28 -0
  106. src/agents/idea_agent/utils/core/logger.py +287 -0
  107. src/agents/idea_agent/utils/core/progress.py +58 -0
  108. src/agents/idea_agent/utils/core/response_parsing.py +57 -0
  109. src/agents/idea_agent/utils/core/run_inputs.py +198 -0
  110. src/agents/idea_agent/utils/mcts/__init__.py +1 -0
  111. src/agents/idea_agent/utils/mcts/component_novelty.py +342 -0
  112. src/agents/idea_agent/utils/mcts/defect_registry.py +302 -0
  113. src/agents/idea_agent/utils/mcts/idea_routes.py +61 -0
  114. src/agents/idea_agent/utils/mcts/idea_taste_presets.py +312 -0
  115. src/agents/idea_agent/utils/mcts/mcts_helpers.py +738 -0
  116. src/agents/idea_agent/utils/mcts/mcts_runtime.py +3000 -0
  117. src/agents/idea_agent/utils/mcts/scientific_intervention_ontology.py +1561 -0
  118. src/agents/idea_agent/utils/mcts/scientific_rubric.py +211 -0
  119. src/agents/idea_agent/utils/mcts/skill_parsing.py +92 -0
  120. src/agents/idea_agent/utils/papers/__init__.py +1 -0
  121. src/agents/idea_agent/utils/papers/paper_graph_vector_store.py +499 -0
  122. src/agents/idea_agent/utils/papers/paper_repository.py +372 -0
  123. src/agents/idea_agent/utils/prompting/__init__.py +1 -0
  124. src/agents/idea_agent/utils/prompting/prompt_views.py +637 -0
  125. src/agents/idea_agent/utils/workflow/__init__.py +1 -0
  126. src/agents/idea_agent/utils/workflow/advanced_analysis_contract.py +244 -0
  127. src/agents/idea_agent/utils/workflow/gap_hypothesis_bridge.py +461 -0
  128. src/agents/idea_agent/utils/workflow/idea_contract.py +426 -0
  129. src/agents/idea_agent/utils/workflow/idea_debate.py +1238 -0
  130. src/agents/idea_agent/utils/workflow/idea_diversity.py +163 -0
  131. src/agents/idea_agent/utils/workflow/idea_fusion.py +889 -0
  132. src/agents/idea_agent/utils/workflow/idea_helpers.py +478 -0
  133. src/agents/idea_agent/utils/workflow/idea_portfolio.py +422 -0
  134. src/agents/idea_agent/utils/workflow/idea_synthesis.py +482 -0
  135. src/agents/idea_agent/utils/workflow/ligagent_flow.py +581 -0
  136. src/agents/idea_agent/utils/workflow/ligagent_handlers.py +1836 -0
  137. src/agents/idea_agent/utils/workflow/ligagent_helpers.py +1331 -0
  138. src/agents/idea_agent/utils/workflow/ligagent_utils.py +322 -0
  139. src/agents/idea_agent/utils/workflow/mature_idea_sources.py +648 -0
  140. src/agents/idea_agent/utils/workflow/multimodal_data_anchoring.py +578 -0
  141. src/agents/idea_agent/utils/workflow/result_persistence.py +774 -0
  142. src/agents/idea_agent/utils/workflow/stage_contract.py +76 -0
  143. src/agents/idea_agent/utils/workflow/workflow_runtime.py +288 -0
  144. src/agents/research_plan_author/__init__.py +50 -0
  145. src/agents/research_plan_author/artifacts.py +270 -0
  146. src/agents/research_plan_author/authoring_blueprint.py +1246 -0
  147. src/agents/research_plan_author/bibtex_renderer.py +252 -0
  148. src/agents/research_plan_author/contract_repair.py +131 -0
  149. src/agents/research_plan_author/contracts.py +745 -0
  150. src/agents/research_plan_author/cross_section_editor.py +232 -0
  151. src/agents/research_plan_author/document_quality.py +987 -0
  152. src/agents/research_plan_author/idea_evolution.py +223 -0
  153. src/agents/research_plan_author/input_loader.py +76 -0
  154. src/agents/research_plan_author/latex_compiler.py +260 -0
  155. src/agents/research_plan_author/latex_safety.py +159 -0
  156. src/agents/research_plan_author/llm_json.py +74 -0
  157. src/agents/research_plan_author/markdown_renderer.py +275 -0
  158. src/agents/research_plan_author/pdf_validator.py +149 -0
  159. src/agents/research_plan_author/render.py +166 -0
  160. src/agents/research_plan_author/render_artifacts.py +187 -0
  161. src/agents/research_plan_author/run.py +765 -0
  162. src/agents/research_plan_author/run_logging.py +209 -0
  163. src/agents/research_plan_author/section_cache.py +184 -0
  164. src/agents/research_plan_author/section_composer.py +1764 -0
  165. src/agents/research_plan_author/section_router.py +209 -0
  166. src/agents/research_plan_author/semantic_validator.py +254 -0
  167. src/agents/research_plan_author/source_bundle.py +46 -0
  168. src/agents/research_plan_author/source_registry.py +208 -0
  169. src/agents/research_plan_author/survey_source_loader.py +137 -0
  170. src/agents/research_plan_author/template_adapter.py +173 -0
  171. src/agents/research_plan_author/template_profile.py +204 -0
  172. src/agents/research_plan_author/tex_renderer.py +496 -0
  173. src/agents/research_plan_author/theory_presentation.py +134 -0
  174. src/agents/research_plan_author/theory_spine.py +703 -0
  175. src/agents/survey_agent/Dockerfile +54 -0
  176. src/agents/survey_agent/README.md +350 -0
  177. src/agents/survey_agent/config/deep_survey.yaml +217 -0
  178. src/agents/survey_agent/config/deep_survey_batch.yaml +176 -0
  179. src/agents/survey_agent/config/deep_survey_fast.yaml +183 -0
  180. src/agents/survey_agent/config/evaluate_baseline.yaml +197 -0
  181. src/agents/survey_agent/config/outcomeRAG.yaml +159 -0
  182. src/agents/survey_agent/env_report.md +348 -0
  183. src/agents/survey_agent/modules/__init__.py +0 -0
  184. src/agents/survey_agent/modules/code_collector.py +2194 -0
  185. src/agents/survey_agent/modules/code_report_generator.py +1282 -0
  186. src/agents/survey_agent/modules/data_manager.py +1713 -0
  187. src/agents/survey_agent/modules/database.py +167 -0
  188. src/agents/survey_agent/modules/fulltext_download_cache.py +462 -0
  189. src/agents/survey_agent/modules/fulltext_http.py +134 -0
  190. src/agents/survey_agent/modules/fulltext_resolution.py +749 -0
  191. src/agents/survey_agent/modules/judge.py +434 -0
  192. src/agents/survey_agent/modules/outcome_RAG.py +236 -0
  193. src/agents/survey_agent/modules/paper_graph_retriever.py +1075 -0
  194. src/agents/survey_agent/modules/pe.py +1729 -0
  195. src/agents/survey_agent/modules/pseudo_creator.py +782 -0
  196. src/agents/survey_agent/modules/pseudo_reviser.py +537 -0
  197. src/agents/survey_agent/modules/refine_agent.py +1952 -0
  198. src/agents/survey_agent/modules/survey_generator.py +5691 -0
  199. src/agents/survey_agent/modules/survey_visualizer.py +1817 -0
  200. src/agents/survey_agent/modules/visual_prompts.py +327 -0
  201. src/agents/survey_agent/modules/work_analyzer.py +2750 -0
  202. src/agents/survey_agent/modules/work_collector.py +5649 -0
  203. src/agents/survey_agent/scripts/baseline_evaluation.py +411 -0
  204. src/agents/survey_agent/scripts/run_deep_survey.py +224 -0
  205. src/agents/survey_agent/scripts/run_deep_survey_adapter.py +407 -0
  206. src/agents/survey_agent/scripts/run_deep_survey_adapter_with_input.py +409 -0
  207. src/agents/survey_agent/scripts/run_deep_survey_batch.py +228 -0
  208. src/agents/survey_agent/scripts/run_deep_survey_batch_arg.py +243 -0
  209. src/agents/survey_agent/scripts/run_deep_survey_batch_settings.py +218 -0
  210. src/agents/survey_agent/scripts/run_keynotes_gen.py +128 -0
  211. src/agents/survey_agent/scripts/run_work_clusters.py +140 -0
  212. src/agents/survey_agent/utils/__init__.py +0 -0
  213. src/agents/survey_agent/utils/ablation_utils.py +317 -0
  214. src/agents/survey_agent/utils/api_call.py +2518 -0
  215. src/agents/survey_agent/utils/chat_utils.py +82 -0
  216. src/agents/survey_agent/utils/config_utils.py +70 -0
  217. src/agents/survey_agent/utils/convert_to_md.py +29 -0
  218. src/agents/survey_agent/utils/err_info.py +24 -0
  219. src/agents/survey_agent/utils/file_utils.py +176 -0
  220. src/agents/survey_agent/utils/gpu_utils.py +145 -0
  221. src/agents/survey_agent/utils/graph_visualizer.py +279 -0
  222. src/agents/survey_agent/utils/html_utils.py +181 -0
  223. src/agents/survey_agent/utils/latex_generator_intra_cluster.py +529 -0
  224. src/agents/survey_agent/utils/latex_generator_relation_table.py +193 -0
  225. src/agents/survey_agent/utils/mineru_section_packer.py +334 -0
  226. src/agents/survey_agent/utils/mineru_utils.py +396 -0
  227. src/agents/survey_agent/utils/paper.py +144 -0
  228. src/agents/survey_agent/utils/read_yaml.py +15 -0
  229. src/agents/survey_agent/utils/repo_utils.py +167 -0
  230. src/agents/survey_agent/utils/rich_logger.py +77 -0
  231. src/agents/survey_agent/utils/step2v2.py +874 -0
  232. src/agents/survey_agent/utils/step2v2_extractor.py +856 -0
  233. src/agents/survey_agent/utils/topic_survey_storage.py +309 -0
  234. src/agents/survey_agent/utils/utils.py +118 -0
  235. src/agents/survey_agent/utils/work.py +2 -0
  236. src/cli.py +1611 -0
  237. src/config/__init__.py +213 -0
  238. src/config/default.yaml +1122 -0
  239. src/harness/LICENSE +21 -0
  240. src/harness/VENDORED.md +14 -0
  241. src/harness/src/__init__.py +0 -0
  242. src/harness/src/openharness/__init__.py +0 -0
  243. src/harness/src/openharness/__main__.py +6 -0
  244. src/harness/src/openharness/api/__init__.py +21 -0
  245. src/harness/src/openharness/api/client.py +281 -0
  246. src/harness/src/openharness/api/codex_client.py +407 -0
  247. src/harness/src/openharness/api/copilot_auth.py +240 -0
  248. src/harness/src/openharness/api/copilot_client.py +134 -0
  249. src/harness/src/openharness/api/errors.py +19 -0
  250. src/harness/src/openharness/api/openai_client.py +577 -0
  251. src/harness/src/openharness/api/provider.py +186 -0
  252. src/harness/src/openharness/api/registry.py +437 -0
  253. src/harness/src/openharness/api/usage.py +17 -0
  254. src/harness/src/openharness/auth/__init__.py +29 -0
  255. src/harness/src/openharness/auth/external.py +610 -0
  256. src/harness/src/openharness/auth/flows.py +189 -0
  257. src/harness/src/openharness/auth/manager.py +482 -0
  258. src/harness/src/openharness/auth/storage.py +269 -0
  259. src/harness/src/openharness/autopilot/__init__.py +23 -0
  260. src/harness/src/openharness/autopilot/service.py +2239 -0
  261. src/harness/src/openharness/autopilot/types.py +91 -0
  262. src/harness/src/openharness/bridge/__init__.py +20 -0
  263. src/harness/src/openharness/bridge/manager.py +106 -0
  264. src/harness/src/openharness/bridge/session_runner.py +46 -0
  265. src/harness/src/openharness/bridge/types.py +37 -0
  266. src/harness/src/openharness/bridge/work_secret.py +41 -0
  267. src/harness/src/openharness/channels/UPSTREAM +6 -0
  268. src/harness/src/openharness/channels/__init__.py +22 -0
  269. src/harness/src/openharness/channels/adapter.py +131 -0
  270. src/harness/src/openharness/channels/bus/__init__.py +6 -0
  271. src/harness/src/openharness/channels/bus/events.py +38 -0
  272. src/harness/src/openharness/channels/bus/queue.py +44 -0
  273. src/harness/src/openharness/channels/impl/__init__.py +6 -0
  274. src/harness/src/openharness/channels/impl/base.py +141 -0
  275. src/harness/src/openharness/channels/impl/dingtalk.py +445 -0
  276. src/harness/src/openharness/channels/impl/discord.py +311 -0
  277. src/harness/src/openharness/channels/impl/email.py +410 -0
  278. src/harness/src/openharness/channels/impl/feishu.py +1342 -0
  279. src/harness/src/openharness/channels/impl/manager.py +257 -0
  280. src/harness/src/openharness/channels/impl/matrix.py +700 -0
  281. src/harness/src/openharness/channels/impl/mochat.py +897 -0
  282. src/harness/src/openharness/channels/impl/qq.py +141 -0
  283. src/harness/src/openharness/channels/impl/slack.py +284 -0
  284. src/harness/src/openharness/channels/impl/telegram.py +525 -0
  285. src/harness/src/openharness/channels/impl/whatsapp.py +159 -0
  286. src/harness/src/openharness/cli.py +2551 -0
  287. src/harness/src/openharness/commands/__init__.py +21 -0
  288. src/harness/src/openharness/commands/registry.py +2783 -0
  289. src/harness/src/openharness/config/__init__.py +34 -0
  290. src/harness/src/openharness/config/paths.py +160 -0
  291. src/harness/src/openharness/config/schema.py +119 -0
  292. src/harness/src/openharness/config/settings.py +1104 -0
  293. src/harness/src/openharness/coordinator/__init__.py +12 -0
  294. src/harness/src/openharness/coordinator/agent_definitions.py +975 -0
  295. src/harness/src/openharness/coordinator/coordinator_mode.py +520 -0
  296. src/harness/src/openharness/engine/__init__.py +80 -0
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  549. src/research_run_ids.py +11 -0
@@ -0,0 +1,374 @@
1
+ """Content search tool with a pure-Python fallback."""
2
+
3
+ from __future__ import annotations
4
+
5
+ import asyncio
6
+ import re
7
+ import shutil
8
+ from pathlib import Path
9
+
10
+ from pydantic import BaseModel, Field
11
+
12
+ from openharness.tools.base import BaseTool, ToolExecutionContext, ToolResult
13
+
14
+
15
+ class GrepToolInput(BaseModel):
16
+ """Arguments for the grep tool."""
17
+
18
+ pattern: str = Field(description="Regular expression to search for")
19
+ root: str | None = Field(
20
+ default=None,
21
+ description="Search root directory or file. For multiple roots, call grep separately per root.",
22
+ )
23
+ file_glob: str = Field(default="**/*")
24
+ case_sensitive: bool = Field(default=True)
25
+ limit: int = Field(default=200, ge=1, le=2000)
26
+ timeout_seconds: int = Field(default=20, ge=1, le=120)
27
+
28
+
29
+ class GrepTool(BaseTool):
30
+ """Search text files for a regex pattern."""
31
+
32
+ name = "grep"
33
+ description = "Search file contents with a regular expression."
34
+ input_model = GrepToolInput
35
+
36
+ def is_read_only(self, arguments: GrepToolInput) -> bool:
37
+ del arguments
38
+ return True
39
+
40
+ async def execute(self, arguments: GrepToolInput, context: ToolExecutionContext) -> ToolResult:
41
+ root = _resolve_path(context.cwd, arguments.root) if arguments.root else context.cwd
42
+ if not root.exists():
43
+ return ToolResult(
44
+ output=(
45
+ f"Search root does not exist: {root}\n"
46
+ "If you intended multiple roots, call grep separately for each root."
47
+ ),
48
+ is_error=True,
49
+ )
50
+ if root.is_file():
51
+ display_base = _display_base(root, context.cwd)
52
+ matches = await _rg_grep_file(
53
+ path=root,
54
+ pattern=arguments.pattern,
55
+ case_sensitive=arguments.case_sensitive,
56
+ limit=arguments.limit,
57
+ display_base=display_base,
58
+ timeout_seconds=arguments.timeout_seconds,
59
+ )
60
+ if matches is not None:
61
+ return _format_rg_result(matches, arguments.timeout_seconds)
62
+
63
+ return ToolResult(
64
+ output=_python_grep_files(
65
+ paths=[root],
66
+ pattern=arguments.pattern,
67
+ case_sensitive=arguments.case_sensitive,
68
+ limit=arguments.limit,
69
+ display_base=display_base,
70
+ )
71
+ )
72
+
73
+ # Prefer ripgrep for performance; fallback to Python when unavailable.
74
+ matches = await _rg_grep(
75
+ root=root,
76
+ pattern=arguments.pattern,
77
+ file_glob=arguments.file_glob,
78
+ case_sensitive=arguments.case_sensitive,
79
+ limit=arguments.limit,
80
+ timeout_seconds=arguments.timeout_seconds,
81
+ )
82
+ if matches is not None:
83
+ return _format_rg_result(matches, arguments.timeout_seconds)
84
+
85
+ # Python fallback (kept for portability).
86
+ return ToolResult(
87
+ output=_python_grep_files(
88
+ paths=root.glob(arguments.file_glob),
89
+ pattern=arguments.pattern,
90
+ case_sensitive=arguments.case_sensitive,
91
+ limit=arguments.limit,
92
+ display_base=root,
93
+ )
94
+ )
95
+
96
+
97
+ def _display_base(path: Path, cwd: Path) -> Path:
98
+ try:
99
+ path.relative_to(cwd)
100
+ except ValueError:
101
+ return path.parent
102
+ return cwd
103
+
104
+
105
+ def _python_grep_files(
106
+ *,
107
+ paths,
108
+ pattern: str,
109
+ case_sensitive: bool,
110
+ limit: int,
111
+ display_base: Path,
112
+ ) -> str:
113
+ # Python fallback (kept for portability).
114
+ flags = 0 if case_sensitive else re.IGNORECASE
115
+ try:
116
+ compiled = re.compile(pattern, flags)
117
+ except re.error as exc:
118
+ return f"(invalid regex pattern '{pattern}': {exc})"
119
+ collected: list[str] = []
120
+
121
+ for path in paths:
122
+ if len(collected) >= limit:
123
+ break
124
+ if not path.is_file():
125
+ continue
126
+ try:
127
+ raw = path.read_bytes()
128
+ except OSError:
129
+ continue
130
+ if b"\x00" in raw:
131
+ continue
132
+ text = raw.decode("utf-8", errors="replace")
133
+ for line_no, line in enumerate(text.splitlines(), start=1):
134
+ if compiled.search(line):
135
+ collected.append(f"{_format_path(path, display_base)}:{line_no}:{line}")
136
+ if len(collected) >= limit:
137
+ break
138
+
139
+ if not collected:
140
+ return "(no matches)"
141
+ return "\n".join(collected)
142
+
143
+
144
+ def _resolve_path(base: Path, candidate: str | None) -> Path:
145
+ path = Path(candidate or ".").expanduser()
146
+ if not path.is_absolute():
147
+ path = base / path
148
+ return path.resolve()
149
+
150
+
151
+ def _format_rg_result(matches: list[str], timeout_seconds: int) -> ToolResult:
152
+ timed_out = bool(matches and matches[-1] == _timeout_marker(timeout_seconds))
153
+ rendered = matches[:-1] if timed_out else matches
154
+ output = "\n".join(rendered) if rendered else "(no matches)"
155
+ if timed_out:
156
+ output = (
157
+ f"{output}\n\n[grep timed out after {timeout_seconds} seconds]"
158
+ if output != "(no matches)"
159
+ else f"[grep timed out after {timeout_seconds} seconds]"
160
+ )
161
+ return ToolResult(output=output, is_error=timed_out)
162
+
163
+
164
+ async def _rg_grep(
165
+ *,
166
+ root: Path,
167
+ pattern: str,
168
+ file_glob: str,
169
+ case_sensitive: bool,
170
+ limit: int,
171
+ timeout_seconds: int,
172
+ ) -> list[str] | None:
173
+ """Return matches using ripgrep, or None if ripgrep is unavailable."""
174
+ rg = shutil.which("rg")
175
+ if not rg:
176
+ return None
177
+
178
+ include_hidden = (root / ".git").exists() or (root / ".gitignore").exists()
179
+ cmd: list[str] = [
180
+ rg,
181
+ "--no-heading",
182
+ "--line-number",
183
+ "--color",
184
+ "never",
185
+ ]
186
+ if include_hidden:
187
+ cmd.append("--hidden")
188
+ if not case_sensitive:
189
+ cmd.append("-i")
190
+ if file_glob:
191
+ cmd.extend(["--glob", file_glob])
192
+ # `--` ensures patterns like `-foo` aren't parsed as flags.
193
+ cmd.extend(["--", pattern, "."])
194
+
195
+ from openharness.sandbox.session import get_docker_sandbox
196
+
197
+ session = get_docker_sandbox()
198
+ if session is not None and session.is_running:
199
+ process = await session.exec_command(
200
+ cmd,
201
+ cwd=root,
202
+ stdout=asyncio.subprocess.PIPE,
203
+ stderr=asyncio.subprocess.DEVNULL,
204
+ )
205
+ else:
206
+ process = await asyncio.create_subprocess_exec(
207
+ *cmd,
208
+ cwd=str(root),
209
+ stdout=asyncio.subprocess.PIPE,
210
+ stderr=asyncio.subprocess.DEVNULL,
211
+ limit=8 * 1024 * 1024, # 8 MB per line — avoids LimitOverrunError on long lines
212
+ )
213
+
214
+ matches: list[str] = []
215
+ try:
216
+ await asyncio.wait_for(
217
+ _collect_rg_matches(process, matches, limit=limit),
218
+ timeout=timeout_seconds,
219
+ )
220
+ except asyncio.TimeoutError:
221
+ matches.append(_timeout_marker(timeout_seconds))
222
+ await _terminate_process(process)
223
+ except asyncio.CancelledError:
224
+ await _terminate_process(process)
225
+ raise
226
+ finally:
227
+ if len(matches) >= limit and process.returncode is None:
228
+ await _terminate_process(process)
229
+ elif process.returncode is None:
230
+ await process.wait()
231
+
232
+ # rg exits 0 when matches are found, 1 when none are found.
233
+ # Any other return code indicates an error; fall back to Python.
234
+ if process.returncode in {0, 1, -15, -9}:
235
+ return matches
236
+ return None
237
+
238
+
239
+ async def _rg_grep_file(
240
+ *,
241
+ path: Path,
242
+ pattern: str,
243
+ case_sensitive: bool,
244
+ limit: int,
245
+ display_base: Path,
246
+ timeout_seconds: int,
247
+ ) -> list[str] | None:
248
+ rg = shutil.which("rg")
249
+ if not rg:
250
+ return None
251
+
252
+ cmd: list[str] = [
253
+ rg,
254
+ "--no-heading",
255
+ "--line-number",
256
+ "--color",
257
+ "never",
258
+ ]
259
+ if not case_sensitive:
260
+ cmd.append("-i")
261
+ cmd.extend(["--", pattern, path.name])
262
+
263
+ from openharness.sandbox.session import get_docker_sandbox
264
+
265
+ session = get_docker_sandbox()
266
+ if session is not None and session.is_running:
267
+ process = await session.exec_command(
268
+ cmd,
269
+ cwd=path.parent,
270
+ stdout=asyncio.subprocess.PIPE,
271
+ stderr=asyncio.subprocess.DEVNULL,
272
+ )
273
+ else:
274
+ process = await asyncio.create_subprocess_exec(
275
+ *cmd,
276
+ cwd=str(path.parent),
277
+ stdout=asyncio.subprocess.PIPE,
278
+ stderr=asyncio.subprocess.DEVNULL,
279
+ limit=8 * 1024 * 1024, # 8 MB per line — avoids LimitOverrunError on long lines
280
+ )
281
+
282
+ matches: list[str] = []
283
+ try:
284
+ await asyncio.wait_for(
285
+ _collect_rg_file_matches(
286
+ process,
287
+ matches,
288
+ limit=limit,
289
+ path=path,
290
+ display_base=display_base,
291
+ ),
292
+ timeout=timeout_seconds,
293
+ )
294
+ except asyncio.TimeoutError:
295
+ matches.append(_timeout_marker(timeout_seconds))
296
+ await _terminate_process(process)
297
+ except asyncio.CancelledError:
298
+ await _terminate_process(process)
299
+ raise
300
+ finally:
301
+ if len(matches) >= limit and process.returncode is None:
302
+ await _terminate_process(process)
303
+ elif process.returncode is None:
304
+ await process.wait()
305
+
306
+ if process.returncode in {0, 1, -15, -9}:
307
+ return matches
308
+ return None
309
+
310
+
311
+ def _timeout_marker(timeout_seconds: int) -> str:
312
+ return f"__OPENHARNESS_GREP_TIMEOUT__:{timeout_seconds}"
313
+
314
+
315
+ async def _collect_rg_matches(
316
+ process: asyncio.subprocess.Process,
317
+ matches: list[str],
318
+ *,
319
+ limit: int,
320
+ ) -> None:
321
+ assert process.stdout is not None
322
+ while len(matches) < limit:
323
+ try:
324
+ raw = await process.stdout.readline()
325
+ except ValueError:
326
+ # Line exceeded the stream buffer limit; skip it and continue.
327
+ continue
328
+ if not raw:
329
+ break
330
+ line = raw.decode("utf-8", errors="replace").rstrip("\n")
331
+ if line:
332
+ matches.append(line)
333
+
334
+
335
+ async def _collect_rg_file_matches(
336
+ process: asyncio.subprocess.Process,
337
+ matches: list[str],
338
+ *,
339
+ limit: int,
340
+ path: Path,
341
+ display_base: Path,
342
+ ) -> None:
343
+ assert process.stdout is not None
344
+ while len(matches) < limit:
345
+ try:
346
+ raw = await process.stdout.readline()
347
+ except ValueError:
348
+ # Line exceeded the stream buffer limit; skip it and continue.
349
+ continue
350
+ if not raw:
351
+ break
352
+ line = raw.decode("utf-8", errors="replace").rstrip("\n")
353
+ if not line:
354
+ continue
355
+ matches.append(f"{_format_path(path, display_base)}:{line}")
356
+
357
+
358
+ async def _terminate_process(process: asyncio.subprocess.Process) -> None:
359
+ if process.returncode is not None:
360
+ return
361
+ process.terminate()
362
+ try:
363
+ await asyncio.wait_for(process.wait(), timeout=2.0)
364
+ except asyncio.TimeoutError:
365
+ process.kill()
366
+ await process.wait()
367
+ return None
368
+
369
+
370
+ def _format_path(path: Path, display_base: Path) -> str:
371
+ try:
372
+ return str(path.relative_to(display_base))
373
+ except ValueError:
374
+ return str(path)