endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/network_device/data.yaml +17 -0
  70. endoreg_db/data/network_device_type/data.yaml +8 -0
  71. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  72. endoreg_db/data/pdf_type/data.yaml +28 -28
  73. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  74. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  75. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  76. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  77. endoreg_db/data/profession/data.yaml +70 -70
  78. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  79. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  80. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  81. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  82. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  83. endoreg_db/data/unit/concentration.yaml +92 -92
  84. endoreg_db/data/unit/data.yaml +17 -17
  85. endoreg_db/data/unit/length.yaml +30 -30
  86. endoreg_db/data/unit/misc.yaml +19 -19
  87. endoreg_db/data/unit/rate.yaml +5 -5
  88. endoreg_db/data/unit/time.yaml +12 -12
  89. endoreg_db/data/unit/volume.yaml +35 -35
  90. endoreg_db/data/unit/weight.yaml +37 -37
  91. endoreg_db/data/waste/data.yaml +11 -11
  92. endoreg_db/forms/__init__.py +2 -2
  93. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  94. endoreg_db/forms/settings/__init__.py +8 -8
  95. endoreg_db/forms/unit.py +5 -5
  96. endoreg_db/management/commands/_load_model_template.py +40 -40
  97. endoreg_db/management/commands/delete_all.py +18 -18
  98. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  99. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  100. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  101. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  102. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  103. endoreg_db/management/commands/import_legacy_images.py +94 -94
  104. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  105. endoreg_db/management/commands/load_active_model_data.py +44 -44
  106. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  107. endoreg_db/management/commands/load_base_db_data.py +132 -128
  108. endoreg_db/management/commands/load_center_data.py +42 -42
  109. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  110. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  111. endoreg_db/management/commands/load_disease_data.py +39 -39
  112. endoreg_db/management/commands/load_distribution_data.py +65 -65
  113. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  114. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  115. endoreg_db/management/commands/load_event_data.py +40 -40
  116. endoreg_db/management/commands/load_examination_data.py +74 -74
  117. endoreg_db/management/commands/load_g_play_data.py +112 -112
  118. endoreg_db/management/commands/load_gender_data.py +43 -43
  119. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  120. endoreg_db/management/commands/load_information_source.py +44 -44
  121. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  122. endoreg_db/management/commands/load_label_data.py +66 -66
  123. endoreg_db/management/commands/load_medication_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  125. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  126. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  128. endoreg_db/management/commands/load_network_data.py +49 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  203. endoreg_db/models/__init__.py +75 -74
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +5 -5
  213. endoreg_db/models/case_template/case_template.py +81 -81
  214. endoreg_db/models/case_template/case_template_rule.py +276 -276
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  216. endoreg_db/models/case_template/case_template_type.py +27 -27
  217. endoreg_db/models/center/__init__.py +4 -4
  218. endoreg_db/models/center/center.py +24 -24
  219. endoreg_db/models/center/center_product.py +33 -33
  220. endoreg_db/models/center/center_resource.py +18 -18
  221. endoreg_db/models/center/center_waste.py +10 -10
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +55 -55
  243. endoreg_db/models/emission/emission_factor.py +19 -19
  244. endoreg_db/models/event.py +21 -21
  245. endoreg_db/models/examination/__init__.py +3 -3
  246. endoreg_db/models/examination/examination.py +26 -26
  247. endoreg_db/models/examination/examination_time.py +27 -27
  248. endoreg_db/models/examination/examination_time_type.py +24 -24
  249. endoreg_db/models/examination/examination_type.py +18 -18
  250. endoreg_db/models/hardware/__init__.py +1 -1
  251. endoreg_db/models/hardware/endoscope.py +44 -44
  252. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  253. endoreg_db/models/information_source.py +29 -29
  254. endoreg_db/models/label/label.py +84 -84
  255. endoreg_db/models/laboratory/lab_value.py +102 -102
  256. endoreg_db/models/legacy_data/__init__.py +3 -3
  257. endoreg_db/models/legacy_data/image.py +34 -34
  258. endoreg_db/models/medication/medication.py +148 -148
  259. endoreg_db/models/network/__init__.py +2 -0
  260. endoreg_db/models/network/network_device.py +27 -0
  261. endoreg_db/models/network/network_device_type.py +23 -0
  262. endoreg_db/models/other/__init__.py +4 -4
  263. endoreg_db/models/other/distribution.py +215 -215
  264. endoreg_db/models/other/material.py +16 -16
  265. endoreg_db/models/other/resource.py +17 -17
  266. endoreg_db/models/other/transport_route.py +20 -20
  267. endoreg_db/models/other/waste.py +20 -20
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +6 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -22
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +7 -7
  278. endoreg_db/models/persons/patient/case/case.py +30 -30
  279. endoreg_db/models/persons/patient/patient.py +216 -216
  280. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  281. endoreg_db/models/persons/patient/patient_event.py +22 -22
  282. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  283. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  284. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  285. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  286. endoreg_db/models/persons/person.py +31 -31
  287. endoreg_db/models/persons/portal_user_information.py +27 -27
  288. endoreg_db/models/prediction/__init__.py +1 -1
  289. endoreg_db/models/prediction/image_classification.py +37 -37
  290. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  291. endoreg_db/models/product/__init__.py +4 -4
  292. endoreg_db/models/product/product.py +97 -97
  293. endoreg_db/models/product/product_group.py +19 -19
  294. endoreg_db/models/product/product_material.py +24 -24
  295. endoreg_db/models/product/product_weight.py +26 -26
  296. endoreg_db/models/product/reference_product.py +99 -99
  297. endoreg_db/models/questionnaires/__init__.py +114 -114
  298. endoreg_db/models/quiz/__init__.py +1 -1
  299. endoreg_db/models/quiz/quiz_answer.py +41 -41
  300. endoreg_db/models/quiz/quiz_question.py +54 -54
  301. endoreg_db/models/report_reader/__init__.py +1 -1
  302. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  303. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  304. endoreg_db/models/rules/__init__.py +4 -4
  305. endoreg_db/models/rules/rule.py +23 -23
  306. endoreg_db/models/rules/rule_applicator.py +224 -224
  307. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  308. endoreg_db/models/rules/rule_type.py +21 -21
  309. endoreg_db/models/rules/ruleset.py +19 -19
  310. endoreg_db/models/unit.py +21 -21
  311. endoreg_db/queries/__init__.py +4 -4
  312. endoreg_db/queries/annotations/__init__.py +2 -2
  313. endoreg_db/queries/annotations/legacy.py +159 -159
  314. endoreg_db/queries/get/__init__.py +5 -5
  315. endoreg_db/queries/get/center.py +42 -42
  316. endoreg_db/queries/get/model.py +13 -13
  317. endoreg_db/queries/get/patient.py +14 -14
  318. endoreg_db/queries/get/patient_examination.py +20 -20
  319. endoreg_db/queries/get/report_file.py +33 -33
  320. endoreg_db/queries/get/video.py +31 -31
  321. endoreg_db/serializers/__init__.py +9 -9
  322. endoreg_db/serializers/ai_model.py +18 -18
  323. endoreg_db/serializers/annotation.py +17 -17
  324. endoreg_db/serializers/center.py +11 -11
  325. endoreg_db/serializers/examination.py +32 -32
  326. endoreg_db/serializers/frame.py +13 -13
  327. endoreg_db/serializers/hardware.py +20 -20
  328. endoreg_db/serializers/label.py +22 -22
  329. endoreg_db/serializers/patient.py +10 -10
  330. endoreg_db/serializers/prediction.py +15 -15
  331. endoreg_db/serializers/report_file.py +7 -7
  332. endoreg_db/serializers/video.py +27 -27
  333. endoreg_db/tests.py +3 -3
  334. endoreg_db/utils/cropping.py +28 -28
  335. endoreg_db/utils/dataloader.py +92 -92
  336. endoreg_db/utils/file_operations.py +30 -30
  337. endoreg_db/utils/hashs.py +33 -33
  338. endoreg_db/utils/legacy_ocr.py +201 -201
  339. endoreg_db/utils/ocr.py +197 -197
  340. endoreg_db/utils/uuid.py +4 -4
  341. endoreg_db/utils/video_metadata.py +87 -87
  342. endoreg_db/views.py +3 -3
  343. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
  344. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
  345. endoreg_db-0.3.7.dist-info/RECORD +363 -0
  346. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
  347. endoreg_db-0.3.6.dist-info/RECORD +0 -357
endoreg_db/data/label/label/data.yaml CHANGED
@@ -1,62 +1,62 @@
1
- # labels are: "appendix", "ileocecal_valve", "polyp", "water_jet", "digital_chromo_endoscopy", "instrument", "wound", "blood", "ileum", "low_quality", "clip", "outside"
2
-
3
- - model: endoreg_db.Label
4
- fields:
5
- name: "appendix"
6
- label_type: "classification"
7
-
8
- - model: endoreg_db.Label
9
- fields:
10
- name: "ileocecal_valve"
11
- label_type: "classification"
12
-
13
- - model: endoreg_db.Label
14
- fields:
15
- name: "polyp"
16
- label_type: "classification"
17
-
18
- - model: endoreg_db.Label
19
- fields:
20
- name: "water_jet"
21
- label_type: "classification"
22
-
23
- - model: endoreg_db.Label
24
- fields:
25
- name: "digital_chromo_endoscopy"
26
- label_type: "classification"
27
-
28
- - model: endoreg_db.Label
29
- fields:
30
- name: "instrument"
31
- label_type: "classification"
32
-
33
- - model: endoreg_db.Label
34
- fields:
35
- name: "wound"
36
- label_type: "classification"
37
-
38
- - model: endoreg_db.Label
39
- fields:
40
- name: "blood"
41
- label_type: "classification"
42
-
43
- - model: endoreg_db.Label
44
- fields:
45
- name: "ileum"
46
- label_type: "classification"
47
-
48
- - model: endoreg_db.Label
49
- fields:
50
- name: "low_quality"
51
- label_type: "classification"
52
-
53
- - model: endoreg_db.Label
54
- fields:
55
- name: "clip"
56
- label_type: "classification"
57
-
58
- - model: endoreg_db.Label
59
- fields:
60
- name: "outside"
61
- label_type: "classification"
62
-
1
+ # labels are: "appendix", "ileocecal_valve", "polyp", "water_jet", "digital_chromo_endoscopy", "instrument", "wound", "blood", "ileum", "low_quality", "clip", "outside"
2
+
3
+ - model: endoreg_db.Label
4
+ fields:
5
+ name: "appendix"
6
+ label_type: "classification"
7
+
8
+ - model: endoreg_db.Label
9
+ fields:
10
+ name: "ileocecal_valve"
11
+ label_type: "classification"
12
+
13
+ - model: endoreg_db.Label
14
+ fields:
15
+ name: "polyp"
16
+ label_type: "classification"
17
+
18
+ - model: endoreg_db.Label
19
+ fields:
20
+ name: "water_jet"
21
+ label_type: "classification"
22
+
23
+ - model: endoreg_db.Label
24
+ fields:
25
+ name: "digital_chromo_endoscopy"
26
+ label_type: "classification"
27
+
28
+ - model: endoreg_db.Label
29
+ fields:
30
+ name: "instrument"
31
+ label_type: "classification"
32
+
33
+ - model: endoreg_db.Label
34
+ fields:
35
+ name: "wound"
36
+ label_type: "classification"
37
+
38
+ - model: endoreg_db.Label
39
+ fields:
40
+ name: "blood"
41
+ label_type: "classification"
42
+
43
+ - model: endoreg_db.Label
44
+ fields:
45
+ name: "ileum"
46
+ label_type: "classification"
47
+
48
+ - model: endoreg_db.Label
49
+ fields:
50
+ name: "low_quality"
51
+ label_type: "classification"
52
+
53
+ - model: endoreg_db.Label
54
+ fields:
55
+ name: "clip"
56
+ label_type: "classification"
57
+
58
+ - model: endoreg_db.Label
59
+ fields:
60
+ name: "outside"
61
+ label_type: "classification"
62
+
endoreg_db/data/label/label-set/data.yaml CHANGED
@@ -1,18 +1,18 @@
1
- - model: endoreg_db.LabelSet
2
- fields:
3
- name: "multilabel_classification"
4
- version: 0
5
- labels: [
6
- "appendix",
7
- "ileocecal_valve",
8
- "polyp",
9
- "water_jet",
10
- "digital_chromo_endoscopy",
11
- "instrument",
12
- "wound",
13
- "blood",
14
- "ileum",
15
- "low_quality",
16
- "clip",
17
- "outside",
1
+ - model: endoreg_db.LabelSet
2
+ fields:
3
+ name: "multilabel_classification"
4
+ version: 0
5
+ labels: [
6
+ "appendix",
7
+ "ileocecal_valve",
8
+ "polyp",
9
+ "water_jet",
10
+ "digital_chromo_endoscopy",
11
+ "instrument",
12
+ "wound",
13
+ "blood",
14
+ "ileum",
15
+ "low_quality",
16
+ "clip",
17
+ "outside",
18
18
  ]
endoreg_db/data/label/label-type/data.yaml CHANGED
@@ -1,7 +1,7 @@
1
- - model: endoreg_db.LabelType
2
- fields:
3
- name: "classification"
4
-
5
- - model: endoreg_db.LabelType
6
- fields:
1
+ - model: endoreg_db.LabelType
2
+ fields:
3
+ name: "classification"
4
+
5
+ - model: endoreg_db.LabelType
6
+ fields:
7
7
  name: "object_detection"
endoreg_db/data/medication/anticoagulation.yaml CHANGED
@@ -1,65 +1,65 @@
1
- - models: endoreg_db.models.medication
2
- fields:
3
- name: "apixaban"
4
- name_de: "Apixaban"
5
- name_en: "Apixaban"
6
- adapt_to_renal_function: true
7
- adapt_to_hepatic_function: true
8
- adapt_to_indication: true
9
- adapt_to_age: true
10
- adapt_to_weight: false
11
- adapt_to_risk: true
12
- default_unit: "miligram"
13
-
14
- - models: endoreg_db.models.medication
15
- fields:
16
- name: "dabigatran"
17
- name_de: "Dabigatran"
18
- name_en: "Dabigatran"
19
- adapt_to_renal_function: true
20
- adapt_to_hepatic_function: true
21
- adapt_to_indication: true
22
- adapt_to_age: true
23
- adapt_to_weight: false
24
- adapt_to_risk: true
25
- default_unit: "miligram"
26
-
27
- - models: endoreg_db.models.medication
28
- fields:
29
- name: "edoxaban"
30
- name_de: "Edoxaban"
31
- name_en: "Edoxaban"
32
- adapt_to_renal_function: true
33
- adapt_to_hepatic_function: true
34
- adapt_to_indication: true
35
- adapt_to_age: true
36
- adapt_to_weight: false
37
- adapt_to_risk: true
38
- default_unit: "miligram"
39
-
40
- - models: endoreg_db.models.medication
41
- fields:
42
- name: "rivaroxaban"
43
- name_de: "Rivaroxaban"
44
- name_en: "Rivaroxaban"
45
- adapt_to_renal_function: true
46
- adapt_to_hepatic_function: true
47
- adapt_to_indication: true
48
- adapt_to_age: true
49
- adapt_to_weight: false
50
- adapt_to_risk: true
51
- default_unit: "miligram"
52
-
53
- - models: endoreg_db.models.medication
54
- fields:
55
- name: "enoxaparin"
56
- name_de: "Enoxaparin"
57
- name_en: "Enoxaparin"
58
- adapt_to_renal_function: true
59
- adapt_to_hepatic_function: false
60
- adapt_to_indication: true
61
- adapt_to_age: false
62
- adapt_to_weight: true
63
- adapt_to_risk: true
64
- default_unit: "miligram"
1
+ - models: endoreg_db.models.medication
2
+ fields:
3
+ name: "apixaban"
4
+ name_de: "Apixaban"
5
+ name_en: "Apixaban"
6
+ adapt_to_renal_function: true
7
+ adapt_to_hepatic_function: true
8
+ adapt_to_indication: true
9
+ adapt_to_age: true
10
+ adapt_to_weight: false
11
+ adapt_to_risk: true
12
+ default_unit: "miligram"
13
+
14
+ - models: endoreg_db.models.medication
15
+ fields:
16
+ name: "dabigatran"
17
+ name_de: "Dabigatran"
18
+ name_en: "Dabigatran"
19
+ adapt_to_renal_function: true
20
+ adapt_to_hepatic_function: true
21
+ adapt_to_indication: true
22
+ adapt_to_age: true
23
+ adapt_to_weight: false
24
+ adapt_to_risk: true
25
+ default_unit: "miligram"
26
+
27
+ - models: endoreg_db.models.medication
28
+ fields:
29
+ name: "edoxaban"
30
+ name_de: "Edoxaban"
31
+ name_en: "Edoxaban"
32
+ adapt_to_renal_function: true
33
+ adapt_to_hepatic_function: true
34
+ adapt_to_indication: true
35
+ adapt_to_age: true
36
+ adapt_to_weight: false
37
+ adapt_to_risk: true
38
+ default_unit: "miligram"
39
+
40
+ - models: endoreg_db.models.medication
41
+ fields:
42
+ name: "rivaroxaban"
43
+ name_de: "Rivaroxaban"
44
+ name_en: "Rivaroxaban"
45
+ adapt_to_renal_function: true
46
+ adapt_to_hepatic_function: true
47
+ adapt_to_indication: true
48
+ adapt_to_age: true
49
+ adapt_to_weight: false
50
+ adapt_to_risk: true
51
+ default_unit: "miligram"
52
+
53
+ - models: endoreg_db.models.medication
54
+ fields:
55
+ name: "enoxaparin"
56
+ name_de: "Enoxaparin"
57
+ name_en: "Enoxaparin"
58
+ adapt_to_renal_function: true
59
+ adapt_to_hepatic_function: false
60
+ adapt_to_indication: true
61
+ adapt_to_age: false
62
+ adapt_to_weight: true
63
+ adapt_to_risk: true
64
+ default_unit: "miligram"
65
65
 
endoreg_db/data/medication/tah.yaml CHANGED
@@ -1,70 +1,70 @@
1
- # ASS
2
- - models: endoreg_db.models.medication
3
- fields:
4
- name: "aspirin"
5
- name_de: "Aspririn"
6
- name_en: "Aspirin"
7
- adapt_to_renal_function: false
8
- adapt_to_hepatic_function: false
9
- adapt_to_indication: true
10
- adapt_to_age: false
11
- adapt_to_weight: false
12
- adapt_to_risk: false
13
- default_unit: "miligram"
14
-
15
- # Clopidogrel
16
- - models: endoreg_db.models.medication
17
- fields:
18
- name: "clopidogrel"
19
- name_de: "Clopidogrel"
20
- name_en: "Clopidogrel"
21
- adapt_to_renal_function: false
22
- adapt_to_hepatic_function: false
23
- adapt_to_indication: true
24
- adapt_to_age: false
25
- adapt_to_weight: false
26
- adapt_to_risk: false
27
- default_unit: "miligram"
28
-
29
- # Prasugrel
30
- - models: endoreg_db.models.medication
31
- fields:
32
- name: "prasugrel"
33
- name_de: "Prasugrel"
34
- name_en: "Prasugrel"
35
- adapt_to_renal_function: false
36
- adapt_to_hepatic_function: false
37
- adapt_to_indication: true
38
- adapt_to_age: false
39
- adapt_to_weight: false
40
- adapt_to_risk: false
41
- default_unit: "miligram"
42
-
43
-
44
- # Ticagrelor
45
- - models: endoreg_db.models.medication
46
- fields:
47
- name: "ticagrelor"
48
- name_de: "Ticagrelor"
49
- name_en: "Ticagrelor"
50
- adapt_to_renal_function: false
51
- adapt_to_hepatic_function: true
52
- adapt_to_indication: true
53
- adapt_to_age: false
54
- adapt_to_weight: false
55
- adapt_to_risk: false
56
- default_unit: "miligram"
57
-
58
- # Tirofiban
59
- - models: endoreg_db.models.medication
60
- fields:
61
- name: "tirofiban"
62
- name_de: "Tirofiban"
63
- name_en: Tirofiban"
64
- adapt_to_renal_function: true
65
- adapt_to_hepatic_function: true
66
- adapt_to_indication: true
67
- adapt_to_age: false
68
- adapt_to_weight: false
69
- adapt_to_risk: false
1
+ # ASS
2
+ - models: endoreg_db.models.medication
3
+ fields:
4
+ name: "aspirin"
5
+ name_de: "Aspririn"
6
+ name_en: "Aspirin"
7
+ adapt_to_renal_function: false
8
+ adapt_to_hepatic_function: false
9
+ adapt_to_indication: true
10
+ adapt_to_age: false
11
+ adapt_to_weight: false
12
+ adapt_to_risk: false
13
+ default_unit: "miligram"
14
+
15
+ # Clopidogrel
16
+ - models: endoreg_db.models.medication
17
+ fields:
18
+ name: "clopidogrel"
19
+ name_de: "Clopidogrel"
20
+ name_en: "Clopidogrel"
21
+ adapt_to_renal_function: false
22
+ adapt_to_hepatic_function: false
23
+ adapt_to_indication: true
24
+ adapt_to_age: false
25
+ adapt_to_weight: false
26
+ adapt_to_risk: false
27
+ default_unit: "miligram"
28
+
29
+ # Prasugrel
30
+ - models: endoreg_db.models.medication
31
+ fields:
32
+ name: "prasugrel"
33
+ name_de: "Prasugrel"
34
+ name_en: "Prasugrel"
35
+ adapt_to_renal_function: false
36
+ adapt_to_hepatic_function: false
37
+ adapt_to_indication: true
38
+ adapt_to_age: false
39
+ adapt_to_weight: false
40
+ adapt_to_risk: false
41
+ default_unit: "miligram"
42
+
43
+
44
+ # Ticagrelor
45
+ - models: endoreg_db.models.medication
46
+ fields:
47
+ name: "ticagrelor"
48
+ name_de: "Ticagrelor"
49
+ name_en: "Ticagrelor"
50
+ adapt_to_renal_function: false
51
+ adapt_to_hepatic_function: true
52
+ adapt_to_indication: true
53
+ adapt_to_age: false
54
+ adapt_to_weight: false
55
+ adapt_to_risk: false
56
+ default_unit: "miligram"
57
+
58
+ # Tirofiban
59
+ - models: endoreg_db.models.medication
60
+ fields:
61
+ name: "tirofiban"
62
+ name_de: "Tirofiban"
63
+ name_en: Tirofiban"
64
+ adapt_to_renal_function: true
65
+ adapt_to_hepatic_function: true
66
+ adapt_to_indication: true
67
+ adapt_to_age: false
68
+ adapt_to_weight: false
69
+ adapt_to_risk: false
70
70
  default_unit: "miligram"