endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/network_device/data.yaml +17 -0
  70. endoreg_db/data/network_device_type/data.yaml +8 -0
  71. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  72. endoreg_db/data/pdf_type/data.yaml +28 -28
  73. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  74. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  75. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  76. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  77. endoreg_db/data/profession/data.yaml +70 -70
  78. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  79. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  80. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  81. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  82. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  83. endoreg_db/data/unit/concentration.yaml +92 -92
  84. endoreg_db/data/unit/data.yaml +17 -17
  85. endoreg_db/data/unit/length.yaml +30 -30
  86. endoreg_db/data/unit/misc.yaml +19 -19
  87. endoreg_db/data/unit/rate.yaml +5 -5
  88. endoreg_db/data/unit/time.yaml +12 -12
  89. endoreg_db/data/unit/volume.yaml +35 -35
  90. endoreg_db/data/unit/weight.yaml +37 -37
  91. endoreg_db/data/waste/data.yaml +11 -11
  92. endoreg_db/forms/__init__.py +2 -2
  93. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  94. endoreg_db/forms/settings/__init__.py +8 -8
  95. endoreg_db/forms/unit.py +5 -5
  96. endoreg_db/management/commands/_load_model_template.py +40 -40
  97. endoreg_db/management/commands/delete_all.py +18 -18
  98. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  99. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  100. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  101. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  102. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  103. endoreg_db/management/commands/import_legacy_images.py +94 -94
  104. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  105. endoreg_db/management/commands/load_active_model_data.py +44 -44
  106. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  107. endoreg_db/management/commands/load_base_db_data.py +132 -128
  108. endoreg_db/management/commands/load_center_data.py +42 -42
  109. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  110. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  111. endoreg_db/management/commands/load_disease_data.py +39 -39
  112. endoreg_db/management/commands/load_distribution_data.py +65 -65
  113. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  114. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  115. endoreg_db/management/commands/load_event_data.py +40 -40
  116. endoreg_db/management/commands/load_examination_data.py +74 -74
  117. endoreg_db/management/commands/load_g_play_data.py +112 -112
  118. endoreg_db/management/commands/load_gender_data.py +43 -43
  119. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  120. endoreg_db/management/commands/load_information_source.py +44 -44
  121. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  122. endoreg_db/management/commands/load_label_data.py +66 -66
  123. endoreg_db/management/commands/load_medication_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  125. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  126. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  128. endoreg_db/management/commands/load_network_data.py +49 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  203. endoreg_db/models/__init__.py +75 -74
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +5 -5
  213. endoreg_db/models/case_template/case_template.py +81 -81
  214. endoreg_db/models/case_template/case_template_rule.py +276 -276
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  216. endoreg_db/models/case_template/case_template_type.py +27 -27
  217. endoreg_db/models/center/__init__.py +4 -4
  218. endoreg_db/models/center/center.py +24 -24
  219. endoreg_db/models/center/center_product.py +33 -33
  220. endoreg_db/models/center/center_resource.py +18 -18
  221. endoreg_db/models/center/center_waste.py +10 -10
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +55 -55
  243. endoreg_db/models/emission/emission_factor.py +19 -19
  244. endoreg_db/models/event.py +21 -21
  245. endoreg_db/models/examination/__init__.py +3 -3
  246. endoreg_db/models/examination/examination.py +26 -26
  247. endoreg_db/models/examination/examination_time.py +27 -27
  248. endoreg_db/models/examination/examination_time_type.py +24 -24
  249. endoreg_db/models/examination/examination_type.py +18 -18
  250. endoreg_db/models/hardware/__init__.py +1 -1
  251. endoreg_db/models/hardware/endoscope.py +44 -44
  252. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  253. endoreg_db/models/information_source.py +29 -29
  254. endoreg_db/models/label/label.py +84 -84
  255. endoreg_db/models/laboratory/lab_value.py +102 -102
  256. endoreg_db/models/legacy_data/__init__.py +3 -3
  257. endoreg_db/models/legacy_data/image.py +34 -34
  258. endoreg_db/models/medication/medication.py +148 -148
  259. endoreg_db/models/network/__init__.py +2 -0
  260. endoreg_db/models/network/network_device.py +27 -0
  261. endoreg_db/models/network/network_device_type.py +23 -0
  262. endoreg_db/models/other/__init__.py +4 -4
  263. endoreg_db/models/other/distribution.py +215 -215
  264. endoreg_db/models/other/material.py +16 -16
  265. endoreg_db/models/other/resource.py +17 -17
  266. endoreg_db/models/other/transport_route.py +20 -20
  267. endoreg_db/models/other/waste.py +20 -20
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +6 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -22
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +7 -7
  278. endoreg_db/models/persons/patient/case/case.py +30 -30
  279. endoreg_db/models/persons/patient/patient.py +216 -216
  280. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  281. endoreg_db/models/persons/patient/patient_event.py +22 -22
  282. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  283. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  284. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  285. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  286. endoreg_db/models/persons/person.py +31 -31
  287. endoreg_db/models/persons/portal_user_information.py +27 -27
  288. endoreg_db/models/prediction/__init__.py +1 -1
  289. endoreg_db/models/prediction/image_classification.py +37 -37
  290. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  291. endoreg_db/models/product/__init__.py +4 -4
  292. endoreg_db/models/product/product.py +97 -97
  293. endoreg_db/models/product/product_group.py +19 -19
  294. endoreg_db/models/product/product_material.py +24 -24
  295. endoreg_db/models/product/product_weight.py +26 -26
  296. endoreg_db/models/product/reference_product.py +99 -99
  297. endoreg_db/models/questionnaires/__init__.py +114 -114
  298. endoreg_db/models/quiz/__init__.py +1 -1
  299. endoreg_db/models/quiz/quiz_answer.py +41 -41
  300. endoreg_db/models/quiz/quiz_question.py +54 -54
  301. endoreg_db/models/report_reader/__init__.py +1 -1
  302. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  303. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  304. endoreg_db/models/rules/__init__.py +4 -4
  305. endoreg_db/models/rules/rule.py +23 -23
  306. endoreg_db/models/rules/rule_applicator.py +224 -224
  307. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  308. endoreg_db/models/rules/rule_type.py +21 -21
  309. endoreg_db/models/rules/ruleset.py +19 -19
  310. endoreg_db/models/unit.py +21 -21
  311. endoreg_db/queries/__init__.py +4 -4
  312. endoreg_db/queries/annotations/__init__.py +2 -2
  313. endoreg_db/queries/annotations/legacy.py +159 -159
  314. endoreg_db/queries/get/__init__.py +5 -5
  315. endoreg_db/queries/get/center.py +42 -42
  316. endoreg_db/queries/get/model.py +13 -13
  317. endoreg_db/queries/get/patient.py +14 -14
  318. endoreg_db/queries/get/patient_examination.py +20 -20
  319. endoreg_db/queries/get/report_file.py +33 -33
  320. endoreg_db/queries/get/video.py +31 -31
  321. endoreg_db/serializers/__init__.py +9 -9
  322. endoreg_db/serializers/ai_model.py +18 -18
  323. endoreg_db/serializers/annotation.py +17 -17
  324. endoreg_db/serializers/center.py +11 -11
  325. endoreg_db/serializers/examination.py +32 -32
  326. endoreg_db/serializers/frame.py +13 -13
  327. endoreg_db/serializers/hardware.py +20 -20
  328. endoreg_db/serializers/label.py +22 -22
  329. endoreg_db/serializers/patient.py +10 -10
  330. endoreg_db/serializers/prediction.py +15 -15
  331. endoreg_db/serializers/report_file.py +7 -7
  332. endoreg_db/serializers/video.py +27 -27
  333. endoreg_db/tests.py +3 -3
  334. endoreg_db/utils/cropping.py +28 -28
  335. endoreg_db/utils/dataloader.py +92 -92
  336. endoreg_db/utils/file_operations.py +30 -30
  337. endoreg_db/utils/hashs.py +33 -33
  338. endoreg_db/utils/legacy_ocr.py +201 -201
  339. endoreg_db/utils/ocr.py +197 -197
  340. endoreg_db/utils/uuid.py +4 -4
  341. endoreg_db/utils/video_metadata.py +87 -87
  342. endoreg_db/views.py +3 -3
  343. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
  344. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
  345. endoreg_db-0.3.7.dist-info/RECORD +363 -0
  346. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
  347. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,148 +1,148 @@
1
- from django.db import models
2
-
3
- class MedicationManager(models.Manager):
4
- def get_by_natural_key(self, name):
5
- return self.get(name=name)
6
-
7
- class Medication(models.Model):
8
- name = models.CharField(max_length=255, unique=True)
9
- name_de = models.CharField(max_length=255, blank=True, null=True)
10
- name_en = models.CharField(max_length=255, blank=True, null=True)
11
- adapt_to_renal_function = models.BooleanField(default = False)
12
- adapt_to_hepatic_function = models.BooleanField(default=False)
13
- adapt_to_indication = models.BooleanField(default=False)
14
- adapt_to_age = models.BooleanField(default=False)
15
- adapt_to_weight = models.BooleanField(default=False)
16
- adapt_to_risk = models.BooleanField(default=False)
17
- default_unit = models.ForeignKey('Unit', on_delete=models.CASCADE)
18
-
19
-
20
- objects = MedicationManager()
21
-
22
- def natural_key(self):
23
- return (self.name,)
24
-
25
- def __str__(self):
26
- return self.name
27
-
28
- class MedicationScheduleManager(models.Manager):
29
- def get_by_natural_key(self, name):
30
- return self.get(name=name)
31
-
32
- class MedicationSchedule(models.Model):
33
- name = models.CharField(max_length=255)
34
- name_de = models.CharField(max_length=255, blank=True, null=True)
35
- name_en = models.CharField(max_length=255, blank=True, null=True)
36
- description = models.TextField(blank=True, null=True)
37
- medication = models.ForeignKey("Medication", on_delete=models.CASCADE)
38
- unit = models.ForeignKey("Unit", on_delete=models.CASCADE)
39
- therapy_duration_d = models.FloatField(blank=True, null=True)
40
- dose = models.FloatField()
41
- intake_times = models.ManyToManyField(
42
- "MedicationIntakeTime",
43
- )
44
-
45
- objects = MedicationScheduleManager()
46
-
47
- def natural_key(self):
48
- return (self.name,)
49
-
50
- def __str__(self):
51
- return self.name
52
-
53
-
54
- class MedicationIntakeTimeManager(models.Manager):
55
- def get_by_natural_key(self, name):
56
- return self.get(name=name)
57
-
58
- class MedicationIntakeTime(models.Model):
59
- name = models.CharField(max_length=255)
60
- name_de = models.CharField(max_length=255, blank=True, null=True)
61
- name_en = models.CharField(max_length=255, blank=True, null=True)
62
- repeats = models.CharField(max_length=20, default = "daily")
63
- time = models.TimeField()
64
-
65
- objects = MedicationIntakeTimeManager()
66
-
67
- def natural_key(self):
68
- return (self.name,)
69
-
70
- def __str__(self):
71
- return self.name
72
-
73
- # IMPLEMENT MEDICATION INDICATION TYPE
74
- class MedicationIndicationTypeManager(models.Manager):
75
- def get_by_natural_key(self, name):
76
- return self.get(name=name)
77
-
78
- class MedicationIndicationType(models.Model):
79
- name = models.CharField(max_length=255, unique=True)
80
- name_de = models.CharField(max_length=255, blank=True, null=True)
81
- name_en = models.CharField(max_length=255, blank=True, null=True)
82
-
83
- objects = MedicationIndicationTypeManager()
84
-
85
- def natural_key(self):
86
- return (self.name,)
87
-
88
- def __str__(self):
89
- return self.name
90
-
91
- @classmethod
92
- def get_random_indication_by_type(cls, name) -> "MedicationIndication":
93
- return cls.objects.get(name=name).medication_indications.order_by('?').first()
94
-
95
-
96
- def get_random_medication_indication(self):
97
- from endoreg_db.models import MedicationIndication
98
- return MedicationIndication.objects.filter(indication_type=self).order_by('?').first()
99
-
100
-
101
- class MedicationIndicationManager(models.Manager):
102
- def get_by_natural_key(self, name):
103
- return self.get(name=name)
104
-
105
- class MedicationIndication(models.Model):
106
- name = models.CharField(max_length=255, unique=True)
107
- indication_type = models.ForeignKey(
108
- "MedicationIndicationType", on_delete=models.CASCADE, related_name="medication_indications"
109
- )
110
- medication_schedules = models.ManyToManyField(
111
- "MedicationSchedule"
112
- )
113
- diseases = models.ManyToManyField(
114
- "Disease"
115
- )
116
- events = models.ManyToManyField(
117
- "Event"
118
- )
119
- classification_choices = models.ManyToManyField(
120
- "DiseaseClassificationChoice"
121
- )
122
- sources = models.ManyToManyField(
123
- "InformationSource"
124
- )
125
-
126
- def get_indication_links(self):
127
- links = {
128
- "medication_schedules": self.medication_schedules,
129
- "diseases": self.diseases,
130
- "events": self.events,
131
- "classification_choices": self.classification_choices
132
- }
133
-
134
- objects = MedicationIndicationManager()
135
-
136
- def natural_key(self):
137
- return (self.name,)
138
-
139
- def __str__(self):
140
- return self.name
141
-
142
- def create_patient_medication_schedules(self, patient):
143
- from endoreg_db.models import PatientMedicationSchedule
144
- for medication_schedule in self.medication_schedules.all():
145
- PatientMedicationSchedule.objects.create(
146
- patient=patient,
147
- medication_schedule=medication_schedule
148
- )
1
+ from django.db import models
2
+
3
+ class MedicationManager(models.Manager):
4
+ def get_by_natural_key(self, name):
5
+ return self.get(name=name)
6
+
7
+ class Medication(models.Model):
8
+ name = models.CharField(max_length=255, unique=True)
9
+ name_de = models.CharField(max_length=255, blank=True, null=True)
10
+ name_en = models.CharField(max_length=255, blank=True, null=True)
11
+ adapt_to_renal_function = models.BooleanField(default = False)
12
+ adapt_to_hepatic_function = models.BooleanField(default=False)
13
+ adapt_to_indication = models.BooleanField(default=False)
14
+ adapt_to_age = models.BooleanField(default=False)
15
+ adapt_to_weight = models.BooleanField(default=False)
16
+ adapt_to_risk = models.BooleanField(default=False)
17
+ default_unit = models.ForeignKey('Unit', on_delete=models.CASCADE)
18
+
19
+
20
+ objects = MedicationManager()
21
+
22
+ def natural_key(self):
23
+ return (self.name,)
24
+
25
+ def __str__(self):
26
+ return self.name
27
+
28
+ class MedicationScheduleManager(models.Manager):
29
+ def get_by_natural_key(self, name):
30
+ return self.get(name=name)
31
+
32
+ class MedicationSchedule(models.Model):
33
+ name = models.CharField(max_length=255)
34
+ name_de = models.CharField(max_length=255, blank=True, null=True)
35
+ name_en = models.CharField(max_length=255, blank=True, null=True)
36
+ description = models.TextField(blank=True, null=True)
37
+ medication = models.ForeignKey("Medication", on_delete=models.CASCADE)
38
+ unit = models.ForeignKey("Unit", on_delete=models.CASCADE)
39
+ therapy_duration_d = models.FloatField(blank=True, null=True)
40
+ dose = models.FloatField()
41
+ intake_times = models.ManyToManyField(
42
+ "MedicationIntakeTime",
43
+ )
44
+
45
+ objects = MedicationScheduleManager()
46
+
47
+ def natural_key(self):
48
+ return (self.name,)
49
+
50
+ def __str__(self):
51
+ return self.name
52
+
53
+
54
+ class MedicationIntakeTimeManager(models.Manager):
55
+ def get_by_natural_key(self, name):
56
+ return self.get(name=name)
57
+
58
+ class MedicationIntakeTime(models.Model):
59
+ name = models.CharField(max_length=255)
60
+ name_de = models.CharField(max_length=255, blank=True, null=True)
61
+ name_en = models.CharField(max_length=255, blank=True, null=True)
62
+ repeats = models.CharField(max_length=20, default = "daily")
63
+ time = models.TimeField()
64
+
65
+ objects = MedicationIntakeTimeManager()
66
+
67
+ def natural_key(self):
68
+ return (self.name,)
69
+
70
+ def __str__(self):
71
+ return self.name
72
+
73
+ # IMPLEMENT MEDICATION INDICATION TYPE
74
+ class MedicationIndicationTypeManager(models.Manager):
75
+ def get_by_natural_key(self, name):
76
+ return self.get(name=name)
77
+
78
+ class MedicationIndicationType(models.Model):
79
+ name = models.CharField(max_length=255, unique=True)
80
+ name_de = models.CharField(max_length=255, blank=True, null=True)
81
+ name_en = models.CharField(max_length=255, blank=True, null=True)
82
+
83
+ objects = MedicationIndicationTypeManager()
84
+
85
+ def natural_key(self):
86
+ return (self.name,)
87
+
88
+ def __str__(self):
89
+ return self.name
90
+
91
+ @classmethod
92
+ def get_random_indication_by_type(cls, name) -> "MedicationIndication":
93
+ return cls.objects.get(name=name).medication_indications.order_by('?').first()
94
+
95
+
96
+ def get_random_medication_indication(self):
97
+ from endoreg_db.models import MedicationIndication
98
+ return MedicationIndication.objects.filter(indication_type=self).order_by('?').first()
99
+
100
+
101
+ class MedicationIndicationManager(models.Manager):
102
+ def get_by_natural_key(self, name):
103
+ return self.get(name=name)
104
+
105
+ class MedicationIndication(models.Model):
106
+ name = models.CharField(max_length=255, unique=True)
107
+ indication_type = models.ForeignKey(
108
+ "MedicationIndicationType", on_delete=models.CASCADE, related_name="medication_indications"
109
+ )
110
+ medication_schedules = models.ManyToManyField(
111
+ "MedicationSchedule"
112
+ )
113
+ diseases = models.ManyToManyField(
114
+ "Disease"
115
+ )
116
+ events = models.ManyToManyField(
117
+ "Event"
118
+ )
119
+ classification_choices = models.ManyToManyField(
120
+ "DiseaseClassificationChoice"
121
+ )
122
+ sources = models.ManyToManyField(
123
+ "InformationSource"
124
+ )
125
+
126
+ def get_indication_links(self):
127
+ links = {
128
+ "medication_schedules": self.medication_schedules,
129
+ "diseases": self.diseases,
130
+ "events": self.events,
131
+ "classification_choices": self.classification_choices
132
+ }
133
+
134
+ objects = MedicationIndicationManager()
135
+
136
+ def natural_key(self):
137
+ return (self.name,)
138
+
139
+ def __str__(self):
140
+ return self.name
141
+
142
+ def create_patient_medication_schedules(self, patient):
143
+ from endoreg_db.models import PatientMedicationSchedule
144
+ for medication_schedule in self.medication_schedules.all():
145
+ PatientMedicationSchedule.objects.create(
146
+ patient=patient,
147
+ medication_schedule=medication_schedule
148
+ )
@@ -0,0 +1,2 @@
1
+ from .network_device import NetworkDevice
2
+ from .network_device_type import NetworkDeviceType
@@ -0,0 +1,27 @@
1
+ # Django db class to store network devices (e.g., servers, clients, switches, etc.)
2
+
3
+ from django.db import models
4
+
5
+ class NetworkDeviceManager(models.Manager):
6
+ # Custom manager for NetworkDevice; defines name as natural key
7
+ def get_by_natural_key(self, name):
8
+ return self.get(name=name)
9
+
10
+ class NetworkDevice(models.Model):
11
+ name = models.CharField(max_length=255)
12
+ ip = models.GenericIPAddressField(blank=True, null=True)
13
+ description = models.CharField(max_length=255)
14
+ device_type = models.ForeignKey("NetworkDeviceType", on_delete=models.CASCADE)
15
+ created = models.DateTimeField(auto_now_add=True)
16
+ updated = models.DateTimeField(auto_now=True)
17
+ objects = NetworkDeviceManager()
18
+
19
+ def __str__(self):
20
+ return self.name
21
+
22
+ class Meta:
23
+ db_table = 'network_devices'
24
+ ordering = ['name']
25
+
26
+ def natural_key(self):
27
+ return (self.name,)
@@ -0,0 +1,23 @@
1
+ # Django db class to store network device types (e.g., server, client, switch, etc.)
2
+
3
+ from django.db import models
4
+
5
+ class NetworkDeviceTypeManager(models.Model):
6
+ # Custom manager for NetworkDeviceType; defines name as natural key
7
+ def get_by_natural_key(self, name):
8
+ return self.get(name=name)
9
+
10
+ class NetworkDeviceType(models.Model):
11
+ name = models.CharField(max_length=255)
12
+ description = models.CharField(max_length=255)
13
+ created = models.DateTimeField(auto_now_add=True)
14
+ updated = models.DateTimeField(auto_now=True)
15
+ objects = NetworkDeviceTypeManager()
16
+
17
+ def __str__(self):
18
+ return self.name
19
+
20
+ class Meta:
21
+ db_table = 'network_device_types'
22
+ ordering = ['name']
23
+
@@ -1,5 +1,5 @@
1
- from .material import Material
2
- from .resource import Resource
3
- from .transport_route import TransportRoute
4
- from .waste import Waste
1
+ from .material import Material
2
+ from .resource import Resource
3
+ from .transport_route import TransportRoute
4
+ from .waste import Waste
5
5
  from .distribution import *