endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl
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- endoreg_db/admin.py +3 -3
- endoreg_db/apps.py +6 -6
- endoreg_db/data/__init__.py +67 -64
- endoreg_db/data/active_model/data.yaml +2 -2
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
- endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
- endoreg_db/data/case_template/template/base.yaml +7 -7
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
- endoreg_db/data/case_template/tmp/_rule_value +13 -13
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
- endoreg_db/data/center/data.yaml +59 -59
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
- endoreg_db/data/disease/cardiovascular.yaml +37 -37
- endoreg_db/data/disease/hepatology.yaml +4 -4
- endoreg_db/data/disease/misc.yaml +5 -5
- endoreg_db/data/disease/renal.yaml +4 -4
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
- endoreg_db/data/distribution/date/patient.yaml +6 -6
- endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
- endoreg_db/data/endoscope_type/data.yaml +10 -10
- endoreg_db/data/endoscopy_processor/data.yaml +45 -45
- endoreg_db/data/event/cardiology.yaml +27 -27
- endoreg_db/data/event/neurology.yaml +13 -13
- endoreg_db/data/event/surgery.yaml +12 -12
- endoreg_db/data/event/thrombembolism.yaml +19 -19
- endoreg_db/data/examination/examinations/data.yaml +65 -65
- endoreg_db/data/examination/time/data.yaml +47 -47
- endoreg_db/data/examination/time-type/data.yaml +7 -7
- endoreg_db/data/examination/type/data.yaml +5 -5
- endoreg_db/data/gender/data.yaml +18 -18
- endoreg_db/data/information_source/data.yaml +30 -30
- endoreg_db/data/information_source/medication.yaml +5 -5
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
- endoreg_db/data/lab_value/coagulation.yaml +48 -48
- endoreg_db/data/lab_value/electrolytes.yaml +189 -189
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
- endoreg_db/data/lab_value/hematology.yaml +169 -169
- endoreg_db/data/lab_value/hormones.yaml +53 -53
- endoreg_db/data/lab_value/lipids.yaml +44 -44
- endoreg_db/data/lab_value/misc.yaml +30 -30
- endoreg_db/data/lab_value/renal_function.yaml +10 -10
- endoreg_db/data/label/label/data.yaml +62 -62
- endoreg_db/data/label/label-set/data.yaml +17 -17
- endoreg_db/data/label/label-type/data.yaml +6 -6
- endoreg_db/data/medication/anticoagulation.yaml +64 -64
- endoreg_db/data/medication/tah.yaml +69 -69
- endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
- endoreg_db/data/medication_indication_type/data.yaml +10 -10
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
- endoreg_db/data/medication_intake_time/base.yaml +30 -30
- endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
- endoreg_db/data/medication_schedule/ass.yaml +12 -12
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
- endoreg_db/data/model_type/data.yaml +6 -6
- endoreg_db/data/network_device/data.yaml +17 -0
- endoreg_db/data/network_device_type/data.yaml +8 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
- endoreg_db/data/pdf_type/data.yaml +28 -28
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
- endoreg_db/data/profession/data.yaml +70 -70
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
- endoreg_db/data/unit/concentration.yaml +92 -92
- endoreg_db/data/unit/data.yaml +17 -17
- endoreg_db/data/unit/length.yaml +30 -30
- endoreg_db/data/unit/misc.yaml +19 -19
- endoreg_db/data/unit/rate.yaml +5 -5
- endoreg_db/data/unit/time.yaml +12 -12
- endoreg_db/data/unit/volume.yaml +35 -35
- endoreg_db/data/unit/weight.yaml +37 -37
- endoreg_db/data/waste/data.yaml +11 -11
- endoreg_db/forms/__init__.py +2 -2
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
- endoreg_db/forms/settings/__init__.py +8 -8
- endoreg_db/forms/unit.py +5 -5
- endoreg_db/management/commands/_load_model_template.py +40 -40
- endoreg_db/management/commands/delete_all.py +18 -18
- endoreg_db/management/commands/delete_legacy_images.py +19 -19
- endoreg_db/management/commands/delete_legacy_videos.py +16 -16
- endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
- endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
- endoreg_db/management/commands/fix_auth_permission.py +20 -20
- endoreg_db/management/commands/import_legacy_images.py +94 -94
- endoreg_db/management/commands/import_legacy_videos.py +76 -76
- endoreg_db/management/commands/load_active_model_data.py +44 -44
- endoreg_db/management/commands/load_ai_model_data.py +44 -44
- endoreg_db/management/commands/load_base_db_data.py +132 -128
- endoreg_db/management/commands/load_center_data.py +42 -42
- endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
- endoreg_db/management/commands/load_disease_classification_data.py +40 -40
- endoreg_db/management/commands/load_disease_data.py +39 -39
- endoreg_db/management/commands/load_distribution_data.py +65 -65
- endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
- endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
- endoreg_db/management/commands/load_event_data.py +40 -40
- endoreg_db/management/commands/load_examination_data.py +74 -74
- endoreg_db/management/commands/load_g_play_data.py +112 -112
- endoreg_db/management/commands/load_gender_data.py +43 -43
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
- endoreg_db/management/commands/load_information_source.py +44 -44
- endoreg_db/management/commands/load_lab_value_data.py +49 -49
- endoreg_db/management/commands/load_label_data.py +66 -66
- endoreg_db/management/commands/load_medication_data.py +40 -40
- endoreg_db/management/commands/load_medication_indication_data.py +62 -62
- endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
- endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
- endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
- endoreg_db/management/commands/load_network_data.py +49 -0
- endoreg_db/management/commands/load_pdf_type_data.py +60 -60
- endoreg_db/management/commands/load_profession_data.py +43 -43
- endoreg_db/management/commands/load_report_reader_flag.py +45 -45
- endoreg_db/management/commands/load_unit_data.py +45 -45
- endoreg_db/management/commands/load_user_groups.py +28 -28
- endoreg_db/management/commands/register_ai_model.py +65 -65
- endoreg_db/management/commands/reset_celery_schedule.py +9 -9
- endoreg_db/migrations/0001_initial.py +582 -582
- endoreg_db/migrations/0002_rawvideofile.py +26 -26
- endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
- endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
- endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
- endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
- endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
- endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
- endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
- endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
- endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
- endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
- endoreg_db/migrations/0013_rawpdffile.py +31 -31
- endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
- endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
- endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
- endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
- endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
- endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
- endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
- endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
- endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
- endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
- endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
- endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
- endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
- endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
- endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
- endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
- endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
- endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
- endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
- endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
- endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
- endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
- endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
- endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
- endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
- endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
- endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
- endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
- endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
- endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
- endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
- endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
- endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
- endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
- endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
- endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
- endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
- endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
- endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
- endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
- endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
- endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
- endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
- endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
- endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
- endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
- endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
- endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
- endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
- endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
- endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
- endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
- endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
- endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
- endoreg_db/models/__init__.py +75 -74
- endoreg_db/models/ai_model/__init__.py +3 -3
- endoreg_db/models/ai_model/active_model.py +9 -9
- endoreg_db/models/ai_model/model_meta.py +24 -24
- endoreg_db/models/ai_model/model_type.py +25 -25
- endoreg_db/models/ai_model/utils.py +8 -8
- endoreg_db/models/annotation/__init__.py +1 -1
- endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
- endoreg_db/models/annotation/image_classification.py +26 -26
- endoreg_db/models/case_template/__init__.py +5 -5
- endoreg_db/models/case_template/case_template.py +81 -81
- endoreg_db/models/case_template/case_template_rule.py +276 -276
- endoreg_db/models/case_template/case_template_rule_value.py +73 -73
- endoreg_db/models/case_template/case_template_type.py +27 -27
- endoreg_db/models/center/__init__.py +4 -4
- endoreg_db/models/center/center.py +24 -24
- endoreg_db/models/center/center_product.py +33 -33
- endoreg_db/models/center/center_resource.py +18 -18
- endoreg_db/models/center/center_waste.py +10 -10
- endoreg_db/models/data_file/__init__.py +5 -5
- endoreg_db/models/data_file/base_classes/__init__.py +2 -2
- endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
- endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
- endoreg_db/models/data_file/frame.py +45 -45
- endoreg_db/models/data_file/import_classes/__init__.py +31 -31
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
- endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
- endoreg_db/models/data_file/metadata/__init__.py +3 -3
- endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
- endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
- endoreg_db/models/data_file/metadata/video_meta.py +132 -132
- endoreg_db/models/data_file/report_file.py +89 -89
- endoreg_db/models/data_file/video/__init__.py +6 -6
- endoreg_db/models/data_file/video/import_meta.py +25 -25
- endoreg_db/models/data_file/video/video.py +25 -25
- endoreg_db/models/data_file/video_segment.py +107 -107
- endoreg_db/models/disease.py +55 -55
- endoreg_db/models/emission/emission_factor.py +19 -19
- endoreg_db/models/event.py +21 -21
- endoreg_db/models/examination/__init__.py +3 -3
- endoreg_db/models/examination/examination.py +26 -26
- endoreg_db/models/examination/examination_time.py +27 -27
- endoreg_db/models/examination/examination_time_type.py +24 -24
- endoreg_db/models/examination/examination_type.py +18 -18
- endoreg_db/models/hardware/__init__.py +1 -1
- endoreg_db/models/hardware/endoscope.py +44 -44
- endoreg_db/models/hardware/endoscopy_processor.py +143 -143
- endoreg_db/models/information_source.py +29 -29
- endoreg_db/models/label/label.py +84 -84
- endoreg_db/models/laboratory/lab_value.py +102 -102
- endoreg_db/models/legacy_data/__init__.py +3 -3
- endoreg_db/models/legacy_data/image.py +34 -34
- endoreg_db/models/medication/medication.py +148 -148
- endoreg_db/models/network/__init__.py +2 -0
- endoreg_db/models/network/network_device.py +27 -0
- endoreg_db/models/network/network_device_type.py +23 -0
- endoreg_db/models/other/__init__.py +4 -4
- endoreg_db/models/other/distribution.py +215 -215
- endoreg_db/models/other/material.py +16 -16
- endoreg_db/models/other/resource.py +17 -17
- endoreg_db/models/other/transport_route.py +20 -20
- endoreg_db/models/other/waste.py +20 -20
- endoreg_db/models/patient_examination/__init__.py +35 -35
- endoreg_db/models/permissions/__init__.py +44 -44
- endoreg_db/models/persons/__init__.py +6 -6
- endoreg_db/models/persons/examiner/__init__.py +1 -1
- endoreg_db/models/persons/examiner/examiner.py +15 -15
- endoreg_db/models/persons/examiner/examiner_type.py +1 -1
- endoreg_db/models/persons/first_name.py +17 -17
- endoreg_db/models/persons/gender.py +22 -22
- endoreg_db/models/persons/last_name.py +19 -19
- endoreg_db/models/persons/patient/__init__.py +7 -7
- endoreg_db/models/persons/patient/case/case.py +30 -30
- endoreg_db/models/persons/patient/patient.py +216 -216
- endoreg_db/models/persons/patient/patient_disease.py +16 -16
- endoreg_db/models/persons/patient/patient_event.py +22 -22
- endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
- endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
- endoreg_db/models/persons/patient/patient_medication.py +43 -43
- endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
- endoreg_db/models/persons/person.py +31 -31
- endoreg_db/models/persons/portal_user_information.py +27 -27
- endoreg_db/models/prediction/__init__.py +1 -1
- endoreg_db/models/prediction/image_classification.py +37 -37
- endoreg_db/models/prediction/video_prediction_meta.py +244 -244
- endoreg_db/models/product/__init__.py +4 -4
- endoreg_db/models/product/product.py +97 -97
- endoreg_db/models/product/product_group.py +19 -19
- endoreg_db/models/product/product_material.py +24 -24
- endoreg_db/models/product/product_weight.py +26 -26
- endoreg_db/models/product/reference_product.py +99 -99
- endoreg_db/models/questionnaires/__init__.py +114 -114
- endoreg_db/models/quiz/__init__.py +1 -1
- endoreg_db/models/quiz/quiz_answer.py +41 -41
- endoreg_db/models/quiz/quiz_question.py +54 -54
- endoreg_db/models/report_reader/__init__.py +1 -1
- endoreg_db/models/report_reader/report_reader_config.py +53 -53
- endoreg_db/models/report_reader/report_reader_flag.py +19 -19
- endoreg_db/models/rules/__init__.py +4 -4
- endoreg_db/models/rules/rule.py +23 -23
- endoreg_db/models/rules/rule_applicator.py +224 -224
- endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
- endoreg_db/models/rules/rule_type.py +21 -21
- endoreg_db/models/rules/ruleset.py +19 -19
- endoreg_db/models/unit.py +21 -21
- endoreg_db/queries/__init__.py +4 -4
- endoreg_db/queries/annotations/__init__.py +2 -2
- endoreg_db/queries/annotations/legacy.py +159 -159
- endoreg_db/queries/get/__init__.py +5 -5
- endoreg_db/queries/get/center.py +42 -42
- endoreg_db/queries/get/model.py +13 -13
- endoreg_db/queries/get/patient.py +14 -14
- endoreg_db/queries/get/patient_examination.py +20 -20
- endoreg_db/queries/get/report_file.py +33 -33
- endoreg_db/queries/get/video.py +31 -31
- endoreg_db/serializers/__init__.py +9 -9
- endoreg_db/serializers/ai_model.py +18 -18
- endoreg_db/serializers/annotation.py +17 -17
- endoreg_db/serializers/center.py +11 -11
- endoreg_db/serializers/examination.py +32 -32
- endoreg_db/serializers/frame.py +13 -13
- endoreg_db/serializers/hardware.py +20 -20
- endoreg_db/serializers/label.py +22 -22
- endoreg_db/serializers/patient.py +10 -10
- endoreg_db/serializers/prediction.py +15 -15
- endoreg_db/serializers/report_file.py +7 -7
- endoreg_db/serializers/video.py +27 -27
- endoreg_db/tests.py +3 -3
- endoreg_db/utils/cropping.py +28 -28
- endoreg_db/utils/dataloader.py +92 -92
- endoreg_db/utils/file_operations.py +30 -30
- endoreg_db/utils/hashs.py +33 -33
- endoreg_db/utils/legacy_ocr.py +201 -201
- endoreg_db/utils/ocr.py +197 -197
- endoreg_db/utils/uuid.py +4 -4
- endoreg_db/utils/video_metadata.py +87 -87
- endoreg_db/views.py +3 -3
- {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
- {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
- endoreg_db-0.3.7.dist-info/RECORD +363 -0
- {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
- endoreg_db-0.3.6.dist-info/RECORD +0 -357
endoreg_db/admin.py
CHANGED
|
@@ -1,3 +1,3 @@
|
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1
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-
from django.contrib import admin
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2
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-
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3
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-
# Register your models here.
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1
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+
from django.contrib import admin
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2
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+
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3
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+
# Register your models here.
|
endoreg_db/apps.py
CHANGED
|
@@ -1,6 +1,6 @@
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1
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-
from django.apps import AppConfig
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2
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3
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-
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4
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class EndoregDbConfig(AppConfig):
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default_auto_field = 'django.db.models.BigAutoField'
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6
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-
name = 'endoreg_db'
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1
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+
from django.apps import AppConfig
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2
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+
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3
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+
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class EndoregDbConfig(AppConfig):
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5
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default_auto_field = 'django.db.models.BigAutoField'
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6
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+
name = 'endoreg_db'
|
endoreg_db/data/__init__.py
CHANGED
|
@@ -1,65 +1,68 @@
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1
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-
from pathlib import Path
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2
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-
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3
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DATA_DIR = Path(__file__).parent
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4
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-
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5
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INFORMATION_DATA_DIR = DATA_DIR / "information_source"
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6
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-
UNIT_DATA_DIR = DATA_DIR / "unit"
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7
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-
CENTER_DATA_DIR = DATA_DIR / "center"
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8
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-
EXAMINATION_DATA_DIR = DATA_DIR / "examination"
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9
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-
LABEL_DATA_DIR = DATA_DIR / "label"
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10
|
-
MODEL_TYPE_DATA_DIR = DATA_DIR / "model_type"
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11
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-
ENDOSCOPY_PROCESSOR_DATA_DIR = DATA_DIR / "endoscopy_processor"
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12
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-
ENDOSCOPE_TYPE_DATA_DIR = DATA_DIR / "endoscope_type"
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13
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-
ACTIVE_MODEL_DATA_DIR = DATA_DIR / "active_model"
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14
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-
PROFESSION_DATA_DIR = DATA_DIR / "profession"
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15
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-
PDF_TYPE_DATA_DIR = DATA_DIR / "pdf_type"
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16
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-
REPORT_READER_FLAG_DATA_DIR = DATA_DIR / "report_reader_flag"
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17
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-
EVENT_DATA_DIR = DATA_DIR / "event"
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18
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-
GENDER_DATA_DIR = DATA_DIR / "gender"
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19
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-
|
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20
|
-
# Green Endoscopy Dashboard Stuffs
|
|
21
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-
CENTER_RESOURCE_DATA_DIR = DATA_DIR / "center_resource"
|
|
22
|
-
CENTER_WASTE_DATA_DIR = DATA_DIR / "center_waste"
|
|
23
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-
EMISSION_FACTOR_DATA_DIR = DATA_DIR / "emission_factor"
|
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24
|
-
MATERIAL_DATA_DIR = DATA_DIR / "material"
|
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25
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-
PRODUCT_DATA_DIR = DATA_DIR / "product"
|
|
26
|
-
PRODUCT_GROUP_DATA_DIR = DATA_DIR / "product_group"
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27
|
-
PRODUCT_MATERIAL_DATA_DIR = DATA_DIR / "product_material"
|
|
28
|
-
PRODUCT_WEIGHT_DATA_DIR = DATA_DIR / "product_weight"
|
|
29
|
-
REFERENCE_PRODUCT_DATA_DIR = DATA_DIR / "reference_product"
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30
|
-
RESOURCE_DATA_DIR = DATA_DIR / "resource"
|
|
31
|
-
WASTE_DATA_DIR = DATA_DIR / "waste"
|
|
32
|
-
TRANSPORT_ROUTE_DATA_DIR = DATA_DIR / "transport_route"
|
|
33
|
-
DISEASE_CLASSIFICATION_DATA_DIR = DATA_DIR / "disease_classification"
|
|
34
|
-
DISEASE_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "disease_classification_choice"
|
|
35
|
-
DISEASE_DATA_DIR = DATA_DIR / "disease"
|
|
36
|
-
MEDICATION_DATA_DIR = DATA_DIR / "medication"
|
|
37
|
-
MEDICATION_INDICATION_DATA_DIR = DATA_DIR / "medication_indication"
|
|
38
|
-
MEDICATION_INDICATION_TYPE_DATA_DIR = DATA_DIR / "medication_indication_type"
|
|
39
|
-
|
|
40
|
-
DISTRIBUTION_BASE_DIR = DATA_DIR / "distribution"
|
|
41
|
-
DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "single_categorical"
|
|
42
|
-
DISTRIBUTION_NUMERIC_DATA_DIR = DISTRIBUTION_BASE_DIR / "numeric"
|
|
43
|
-
DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "multiple_categorical"
|
|
44
|
-
DISTRIBUTION_DATE_DATA_DIR = DISTRIBUTION_BASE_DIR / "date"
|
|
45
|
-
|
|
46
|
-
# G-Play Stuffs
|
|
47
|
-
CASE_TEMPLATE_BASE_DIR = DATA_DIR / "case_template"
|
|
48
|
-
CASE_TEMPLATE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template"
|
|
49
|
-
CASE_TEMPLATE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template_type"
|
|
50
|
-
CASE_TEMPLATE_RULE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule"
|
|
51
|
-
CASE_TEMPLATE_RULE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_type"
|
|
52
|
-
CASE_TEMPLATE_RULE_VALUE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value"
|
|
53
|
-
CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value_type"
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
1
|
+
from pathlib import Path
|
|
2
|
+
|
|
3
|
+
DATA_DIR = Path(__file__).parent
|
|
4
|
+
|
|
5
|
+
INFORMATION_DATA_DIR = DATA_DIR / "information_source"
|
|
6
|
+
UNIT_DATA_DIR = DATA_DIR / "unit"
|
|
7
|
+
CENTER_DATA_DIR = DATA_DIR / "center"
|
|
8
|
+
EXAMINATION_DATA_DIR = DATA_DIR / "examination"
|
|
9
|
+
LABEL_DATA_DIR = DATA_DIR / "label"
|
|
10
|
+
MODEL_TYPE_DATA_DIR = DATA_DIR / "model_type"
|
|
11
|
+
ENDOSCOPY_PROCESSOR_DATA_DIR = DATA_DIR / "endoscopy_processor"
|
|
12
|
+
ENDOSCOPE_TYPE_DATA_DIR = DATA_DIR / "endoscope_type"
|
|
13
|
+
ACTIVE_MODEL_DATA_DIR = DATA_DIR / "active_model"
|
|
14
|
+
PROFESSION_DATA_DIR = DATA_DIR / "profession"
|
|
15
|
+
PDF_TYPE_DATA_DIR = DATA_DIR / "pdf_type"
|
|
16
|
+
REPORT_READER_FLAG_DATA_DIR = DATA_DIR / "report_reader_flag"
|
|
17
|
+
EVENT_DATA_DIR = DATA_DIR / "event"
|
|
18
|
+
GENDER_DATA_DIR = DATA_DIR / "gender"
|
|
19
|
+
|
|
20
|
+
# Green Endoscopy Dashboard Stuffs
|
|
21
|
+
CENTER_RESOURCE_DATA_DIR = DATA_DIR / "center_resource"
|
|
22
|
+
CENTER_WASTE_DATA_DIR = DATA_DIR / "center_waste"
|
|
23
|
+
EMISSION_FACTOR_DATA_DIR = DATA_DIR / "emission_factor"
|
|
24
|
+
MATERIAL_DATA_DIR = DATA_DIR / "material"
|
|
25
|
+
PRODUCT_DATA_DIR = DATA_DIR / "product"
|
|
26
|
+
PRODUCT_GROUP_DATA_DIR = DATA_DIR / "product_group"
|
|
27
|
+
PRODUCT_MATERIAL_DATA_DIR = DATA_DIR / "product_material"
|
|
28
|
+
PRODUCT_WEIGHT_DATA_DIR = DATA_DIR / "product_weight"
|
|
29
|
+
REFERENCE_PRODUCT_DATA_DIR = DATA_DIR / "reference_product"
|
|
30
|
+
RESOURCE_DATA_DIR = DATA_DIR / "resource"
|
|
31
|
+
WASTE_DATA_DIR = DATA_DIR / "waste"
|
|
32
|
+
TRANSPORT_ROUTE_DATA_DIR = DATA_DIR / "transport_route"
|
|
33
|
+
DISEASE_CLASSIFICATION_DATA_DIR = DATA_DIR / "disease_classification"
|
|
34
|
+
DISEASE_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "disease_classification_choice"
|
|
35
|
+
DISEASE_DATA_DIR = DATA_DIR / "disease"
|
|
36
|
+
MEDICATION_DATA_DIR = DATA_DIR / "medication"
|
|
37
|
+
MEDICATION_INDICATION_DATA_DIR = DATA_DIR / "medication_indication"
|
|
38
|
+
MEDICATION_INDICATION_TYPE_DATA_DIR = DATA_DIR / "medication_indication_type"
|
|
39
|
+
|
|
40
|
+
DISTRIBUTION_BASE_DIR = DATA_DIR / "distribution"
|
|
41
|
+
DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "single_categorical"
|
|
42
|
+
DISTRIBUTION_NUMERIC_DATA_DIR = DISTRIBUTION_BASE_DIR / "numeric"
|
|
43
|
+
DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "multiple_categorical"
|
|
44
|
+
DISTRIBUTION_DATE_DATA_DIR = DISTRIBUTION_BASE_DIR / "date"
|
|
45
|
+
|
|
46
|
+
# G-Play Stuffs
|
|
47
|
+
CASE_TEMPLATE_BASE_DIR = DATA_DIR / "case_template"
|
|
48
|
+
CASE_TEMPLATE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template"
|
|
49
|
+
CASE_TEMPLATE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template_type"
|
|
50
|
+
CASE_TEMPLATE_RULE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule"
|
|
51
|
+
CASE_TEMPLATE_RULE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_type"
|
|
52
|
+
CASE_TEMPLATE_RULE_VALUE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value"
|
|
53
|
+
CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value_type"
|
|
54
|
+
|
|
55
|
+
# NETWORK
|
|
56
|
+
NETWORK_DEVICE_DATA_DIR = DATA_DIR / "network_device"
|
|
57
|
+
NETWORK_DEVICE_TYPE_DATA_DIR = DATA_DIR / "network_device_type"
|
|
58
|
+
|
|
59
|
+
# To Do
|
|
60
|
+
LAB_VALUE_DATA_DIR = DATA_DIR / "lab_value"
|
|
61
|
+
PATIENT_LAB_SAMPLE_TYPE_DATA_DIR = DATA_DIR / "patient_lab_sample_type"
|
|
62
|
+
MEDICATION_SCHEDULE_DATA_DIR = DATA_DIR / "medication_schedule"
|
|
63
|
+
MEDICATION_INTAKE_TIME_DATA_DIR = DATA_DIR / "medication_intake_time"
|
|
64
|
+
|
|
65
|
+
|
|
66
|
+
RULE_TYPE_DATA_DIR = DATA_DIR / "rule_type"
|
|
67
|
+
RULE_ATTRIBUTE_DTYPE_DATA_DIR = DATA_DIR / "rule_attribute_dtype"
|
|
65
68
|
RULESET_DATA_DIR = DATA_DIR / "ruleset"
|
|
@@ -1,3 +1,3 @@
|
|
|
1
|
-
- model: endoreg_db.active_model
|
|
2
|
-
data:
|
|
1
|
+
- model: endoreg_db.active_model
|
|
2
|
+
data:
|
|
3
3
|
- name: "multilabel_image_classification"
|
|
@@ -1,167 +1,167 @@
|
|
|
1
|
-
- model: endoreg_db.case_template_rule
|
|
2
|
-
fields:
|
|
3
|
-
name: "patient_lab_sample-add_value-sodium-default"
|
|
4
|
-
rule_type: "create-object"
|
|
5
|
-
parent_model: "PatientLabSample"
|
|
6
|
-
parent_field: "sample"
|
|
7
|
-
target_model: "PatientLabValue"
|
|
8
|
-
extra_parameters: {
|
|
9
|
-
"create_method": {
|
|
10
|
-
"name": "create_lab_value_by_sample",
|
|
11
|
-
"kwargs": {
|
|
12
|
-
"lab_value_name": "sodium",
|
|
13
|
-
}
|
|
14
|
-
},
|
|
15
|
-
"actions": [
|
|
16
|
-
{
|
|
17
|
-
"name": "set_value_by_distribution",
|
|
18
|
-
"kwargs": {}
|
|
19
|
-
}
|
|
20
|
-
]
|
|
21
|
-
|
|
22
|
-
}
|
|
23
|
-
|
|
24
|
-
# potassium
|
|
25
|
-
- model: endoreg_db.case_template_rule
|
|
26
|
-
fields:
|
|
27
|
-
name: "patient_lab_sample-add_value-potassium-default"
|
|
28
|
-
rule_type: "create-object"
|
|
29
|
-
parent_model: "PatientLabSample"
|
|
30
|
-
parent_field: "sample"
|
|
31
|
-
target_model: "PatientLabValue"
|
|
32
|
-
extra_parameters: {
|
|
33
|
-
"create_method": {
|
|
34
|
-
"name": "create_lab_value_by_sample",
|
|
35
|
-
"kwargs": {
|
|
36
|
-
"lab_value_name": "potassium",
|
|
37
|
-
}
|
|
38
|
-
},
|
|
39
|
-
"actions": [
|
|
40
|
-
{
|
|
41
|
-
"name": "set_value_by_distribution",
|
|
42
|
-
"kwargs": {}
|
|
43
|
-
}
|
|
44
|
-
]
|
|
45
|
-
|
|
46
|
-
}
|
|
47
|
-
|
|
48
|
-
- model: endoreg_db.case_template_rule
|
|
49
|
-
fields:
|
|
50
|
-
name: "patient_lab_sample-add_value-hemoglobin-default"
|
|
51
|
-
rule_type: "create-object"
|
|
52
|
-
parent_model: "PatientLabSample"
|
|
53
|
-
parent_field: "sample"
|
|
54
|
-
target_model: "PatientLabValue"
|
|
55
|
-
extra_parameters: {
|
|
56
|
-
"create_method": {
|
|
57
|
-
"name": "create_lab_value_by_sample",
|
|
58
|
-
"kwargs": {
|
|
59
|
-
"lab_value_name": "hemoglobin",
|
|
60
|
-
}
|
|
61
|
-
},
|
|
62
|
-
"actions": [
|
|
63
|
-
{
|
|
64
|
-
"name": "set_value_by_distribution",
|
|
65
|
-
"kwargs": {}
|
|
66
|
-
}
|
|
67
|
-
]
|
|
68
|
-
|
|
69
|
-
}
|
|
70
|
-
|
|
71
|
-
# hematocrit
|
|
72
|
-
- model: endoreg_db.case_template_rule
|
|
73
|
-
fields:
|
|
74
|
-
name: "patient_lab_sample-add_value-hematocrit-default"
|
|
75
|
-
rule_type: "create-object"
|
|
76
|
-
parent_model: "PatientLabSample"
|
|
77
|
-
parent_field: "sample"
|
|
78
|
-
target_model: "PatientLabValue"
|
|
79
|
-
extra_parameters: {
|
|
80
|
-
"create_method": {
|
|
81
|
-
"name": "create_lab_value_by_sample",
|
|
82
|
-
"kwargs": {
|
|
83
|
-
"lab_value_name": "hematocrit",
|
|
84
|
-
}
|
|
85
|
-
},
|
|
86
|
-
"actions": [
|
|
87
|
-
{
|
|
88
|
-
"name": "set_value_by_distribution",
|
|
89
|
-
"kwargs": {}
|
|
90
|
-
}
|
|
91
|
-
]
|
|
92
|
-
|
|
93
|
-
}
|
|
94
|
-
|
|
95
|
-
# platelet count
|
|
96
|
-
- model: endoreg_db.case_template_rule
|
|
97
|
-
fields:
|
|
98
|
-
name: "patient_lab_sample-add_value-platelets-default"
|
|
99
|
-
rule_type: "create-object"
|
|
100
|
-
parent_model: "PatientLabSample"
|
|
101
|
-
parent_field: "sample"
|
|
102
|
-
target_model: "PatientLabValue"
|
|
103
|
-
extra_parameters: {
|
|
104
|
-
"create_method": {
|
|
105
|
-
"name": "create_lab_value_by_sample",
|
|
106
|
-
"kwargs": {
|
|
107
|
-
"lab_value_name": "platelets",
|
|
108
|
-
}
|
|
109
|
-
},
|
|
110
|
-
"actions": [
|
|
111
|
-
{
|
|
112
|
-
"name": "set_value_by_distribution",
|
|
113
|
-
"kwargs": {}
|
|
114
|
-
}
|
|
115
|
-
]
|
|
116
|
-
|
|
117
|
-
}
|
|
118
|
-
|
|
119
|
-
# white cell count
|
|
120
|
-
- model: endoreg_db.case_template_rule
|
|
121
|
-
fields:
|
|
122
|
-
name: "patient_lab_sample-add_value-white_blood_cells-default"
|
|
123
|
-
rule_type: "create-object"
|
|
124
|
-
parent_model: "PatientLabSample"
|
|
125
|
-
parent_field: "sample"
|
|
126
|
-
target_model: "PatientLabValue"
|
|
127
|
-
extra_parameters: {
|
|
128
|
-
"create_method": {
|
|
129
|
-
"name": "create_lab_value_by_sample",
|
|
130
|
-
"kwargs": {
|
|
131
|
-
"lab_value_name": "white_blood_cells",
|
|
132
|
-
}
|
|
133
|
-
},
|
|
134
|
-
"actions": [
|
|
135
|
-
{
|
|
136
|
-
"name": "set_value_by_distribution",
|
|
137
|
-
"kwargs": {}
|
|
138
|
-
}
|
|
139
|
-
]
|
|
140
|
-
|
|
141
|
-
}
|
|
142
|
-
|
|
143
|
-
# estimated glomerular filtration rate
|
|
144
|
-
- model: endoreg_db.case_template_rule
|
|
145
|
-
fields:
|
|
146
|
-
name: "patient_lab_sample-add_value-egfr-default"
|
|
147
|
-
rule_type: "create-object"
|
|
148
|
-
parent_model: "PatientLabSample"
|
|
149
|
-
parent_field: "sample"
|
|
150
|
-
target_model: "PatientLabValue"
|
|
151
|
-
extra_parameters: {
|
|
152
|
-
"create_method": {
|
|
153
|
-
"name": "create_lab_value_by_sample",
|
|
154
|
-
"kwargs": {
|
|
155
|
-
"lab_value_name": "estimated_glomerular_filtration_rate",
|
|
156
|
-
}
|
|
157
|
-
},
|
|
158
|
-
"actions": [
|
|
159
|
-
{
|
|
160
|
-
"name": "set_value_by_distribution",
|
|
161
|
-
"kwargs": {}
|
|
162
|
-
}
|
|
163
|
-
]
|
|
164
|
-
|
|
165
|
-
}
|
|
166
|
-
|
|
167
|
-
|
|
1
|
+
- model: endoreg_db.case_template_rule
|
|
2
|
+
fields:
|
|
3
|
+
name: "patient_lab_sample-add_value-sodium-default"
|
|
4
|
+
rule_type: "create-object"
|
|
5
|
+
parent_model: "PatientLabSample"
|
|
6
|
+
parent_field: "sample"
|
|
7
|
+
target_model: "PatientLabValue"
|
|
8
|
+
extra_parameters: {
|
|
9
|
+
"create_method": {
|
|
10
|
+
"name": "create_lab_value_by_sample",
|
|
11
|
+
"kwargs": {
|
|
12
|
+
"lab_value_name": "sodium",
|
|
13
|
+
}
|
|
14
|
+
},
|
|
15
|
+
"actions": [
|
|
16
|
+
{
|
|
17
|
+
"name": "set_value_by_distribution",
|
|
18
|
+
"kwargs": {}
|
|
19
|
+
}
|
|
20
|
+
]
|
|
21
|
+
|
|
22
|
+
}
|
|
23
|
+
|
|
24
|
+
# potassium
|
|
25
|
+
- model: endoreg_db.case_template_rule
|
|
26
|
+
fields:
|
|
27
|
+
name: "patient_lab_sample-add_value-potassium-default"
|
|
28
|
+
rule_type: "create-object"
|
|
29
|
+
parent_model: "PatientLabSample"
|
|
30
|
+
parent_field: "sample"
|
|
31
|
+
target_model: "PatientLabValue"
|
|
32
|
+
extra_parameters: {
|
|
33
|
+
"create_method": {
|
|
34
|
+
"name": "create_lab_value_by_sample",
|
|
35
|
+
"kwargs": {
|
|
36
|
+
"lab_value_name": "potassium",
|
|
37
|
+
}
|
|
38
|
+
},
|
|
39
|
+
"actions": [
|
|
40
|
+
{
|
|
41
|
+
"name": "set_value_by_distribution",
|
|
42
|
+
"kwargs": {}
|
|
43
|
+
}
|
|
44
|
+
]
|
|
45
|
+
|
|
46
|
+
}
|
|
47
|
+
|
|
48
|
+
- model: endoreg_db.case_template_rule
|
|
49
|
+
fields:
|
|
50
|
+
name: "patient_lab_sample-add_value-hemoglobin-default"
|
|
51
|
+
rule_type: "create-object"
|
|
52
|
+
parent_model: "PatientLabSample"
|
|
53
|
+
parent_field: "sample"
|
|
54
|
+
target_model: "PatientLabValue"
|
|
55
|
+
extra_parameters: {
|
|
56
|
+
"create_method": {
|
|
57
|
+
"name": "create_lab_value_by_sample",
|
|
58
|
+
"kwargs": {
|
|
59
|
+
"lab_value_name": "hemoglobin",
|
|
60
|
+
}
|
|
61
|
+
},
|
|
62
|
+
"actions": [
|
|
63
|
+
{
|
|
64
|
+
"name": "set_value_by_distribution",
|
|
65
|
+
"kwargs": {}
|
|
66
|
+
}
|
|
67
|
+
]
|
|
68
|
+
|
|
69
|
+
}
|
|
70
|
+
|
|
71
|
+
# hematocrit
|
|
72
|
+
- model: endoreg_db.case_template_rule
|
|
73
|
+
fields:
|
|
74
|
+
name: "patient_lab_sample-add_value-hematocrit-default"
|
|
75
|
+
rule_type: "create-object"
|
|
76
|
+
parent_model: "PatientLabSample"
|
|
77
|
+
parent_field: "sample"
|
|
78
|
+
target_model: "PatientLabValue"
|
|
79
|
+
extra_parameters: {
|
|
80
|
+
"create_method": {
|
|
81
|
+
"name": "create_lab_value_by_sample",
|
|
82
|
+
"kwargs": {
|
|
83
|
+
"lab_value_name": "hematocrit",
|
|
84
|
+
}
|
|
85
|
+
},
|
|
86
|
+
"actions": [
|
|
87
|
+
{
|
|
88
|
+
"name": "set_value_by_distribution",
|
|
89
|
+
"kwargs": {}
|
|
90
|
+
}
|
|
91
|
+
]
|
|
92
|
+
|
|
93
|
+
}
|
|
94
|
+
|
|
95
|
+
# platelet count
|
|
96
|
+
- model: endoreg_db.case_template_rule
|
|
97
|
+
fields:
|
|
98
|
+
name: "patient_lab_sample-add_value-platelets-default"
|
|
99
|
+
rule_type: "create-object"
|
|
100
|
+
parent_model: "PatientLabSample"
|
|
101
|
+
parent_field: "sample"
|
|
102
|
+
target_model: "PatientLabValue"
|
|
103
|
+
extra_parameters: {
|
|
104
|
+
"create_method": {
|
|
105
|
+
"name": "create_lab_value_by_sample",
|
|
106
|
+
"kwargs": {
|
|
107
|
+
"lab_value_name": "platelets",
|
|
108
|
+
}
|
|
109
|
+
},
|
|
110
|
+
"actions": [
|
|
111
|
+
{
|
|
112
|
+
"name": "set_value_by_distribution",
|
|
113
|
+
"kwargs": {}
|
|
114
|
+
}
|
|
115
|
+
]
|
|
116
|
+
|
|
117
|
+
}
|
|
118
|
+
|
|
119
|
+
# white cell count
|
|
120
|
+
- model: endoreg_db.case_template_rule
|
|
121
|
+
fields:
|
|
122
|
+
name: "patient_lab_sample-add_value-white_blood_cells-default"
|
|
123
|
+
rule_type: "create-object"
|
|
124
|
+
parent_model: "PatientLabSample"
|
|
125
|
+
parent_field: "sample"
|
|
126
|
+
target_model: "PatientLabValue"
|
|
127
|
+
extra_parameters: {
|
|
128
|
+
"create_method": {
|
|
129
|
+
"name": "create_lab_value_by_sample",
|
|
130
|
+
"kwargs": {
|
|
131
|
+
"lab_value_name": "white_blood_cells",
|
|
132
|
+
}
|
|
133
|
+
},
|
|
134
|
+
"actions": [
|
|
135
|
+
{
|
|
136
|
+
"name": "set_value_by_distribution",
|
|
137
|
+
"kwargs": {}
|
|
138
|
+
}
|
|
139
|
+
]
|
|
140
|
+
|
|
141
|
+
}
|
|
142
|
+
|
|
143
|
+
# estimated glomerular filtration rate
|
|
144
|
+
- model: endoreg_db.case_template_rule
|
|
145
|
+
fields:
|
|
146
|
+
name: "patient_lab_sample-add_value-egfr-default"
|
|
147
|
+
rule_type: "create-object"
|
|
148
|
+
parent_model: "PatientLabSample"
|
|
149
|
+
parent_field: "sample"
|
|
150
|
+
target_model: "PatientLabValue"
|
|
151
|
+
extra_parameters: {
|
|
152
|
+
"create_method": {
|
|
153
|
+
"name": "create_lab_value_by_sample",
|
|
154
|
+
"kwargs": {
|
|
155
|
+
"lab_value_name": "estimated_glomerular_filtration_rate",
|
|
156
|
+
}
|
|
157
|
+
},
|
|
158
|
+
"actions": [
|
|
159
|
+
{
|
|
160
|
+
"name": "set_value_by_distribution",
|
|
161
|
+
"kwargs": {}
|
|
162
|
+
}
|
|
163
|
+
]
|
|
164
|
+
|
|
165
|
+
}
|
|
166
|
+
|
|
167
|
+
|
|
@@ -1,8 +1,8 @@
|
|
|
1
|
-
- model: endoreg_db.case_template_rule
|
|
2
|
-
fields:
|
|
3
|
-
name: "patient-set-age-screening_colo_population"
|
|
4
|
-
rule_type: "set-field-by_distribution"
|
|
5
|
-
parent_model: "Patient"
|
|
6
|
-
target_field: "dob"
|
|
7
|
-
value_type: "date"
|
|
1
|
+
- model: endoreg_db.case_template_rule
|
|
2
|
+
fields:
|
|
3
|
+
name: "patient-set-age-screening_colo_population"
|
|
4
|
+
rule_type: "set-field-by_distribution"
|
|
5
|
+
parent_model: "Patient"
|
|
6
|
+
target_field: "dob"
|
|
7
|
+
value_type: "date"
|
|
8
8
|
date_value_distribution: "age-screening_colo_population"
|
|
@@ -1,9 +1,9 @@
|
|
|
1
|
-
- model: endoreg_db.case_template_rule
|
|
2
|
-
fields:
|
|
3
|
-
name: "patient-set-gender-random"
|
|
4
|
-
rule_type: "set-field-by_distribution"
|
|
5
|
-
parent_model: "Patient"
|
|
6
|
-
target_field: "gender"
|
|
7
|
-
target_model: "Gender"
|
|
8
|
-
value_type: "foreign_key"
|
|
1
|
+
- model: endoreg_db.case_template_rule
|
|
2
|
+
fields:
|
|
3
|
+
name: "patient-set-gender-random"
|
|
4
|
+
rule_type: "set-field-by_distribution"
|
|
5
|
+
parent_model: "Patient"
|
|
6
|
+
target_field: "gender"
|
|
7
|
+
target_model: "Gender"
|
|
8
|
+
value_type: "foreign_key"
|
|
9
9
|
single_categorical_value_distribution: "gender-random"
|
|
@@ -1,23 +1,23 @@
|
|
|
1
|
-
- model: endoreg_db.case_template_rule
|
|
2
|
-
fields:
|
|
3
|
-
name: "create-patient_lab_sample-default"
|
|
4
|
-
rule_type: "create-object"
|
|
5
|
-
target_model: "PatientLabSample"
|
|
6
|
-
parent_field: "patient"
|
|
7
|
-
chained_rules: [
|
|
8
|
-
"patient_lab_sample-add_value-sodium-default",
|
|
9
|
-
"patient_lab_sample-add_value-potassium-default",
|
|
10
|
-
"patient_lab_sample-add_value-egfr-default",
|
|
11
|
-
"patient_lab_sample-add_value-hemoglobin-default",
|
|
12
|
-
"patient_lab_sample-add_value-hematocrit-default",
|
|
13
|
-
"patient_lab_sample-add_value-platelets-default",
|
|
14
|
-
"patient_lab_sample-add_value-white_blood_cells-default"
|
|
15
|
-
]
|
|
16
|
-
extra_parameters: {
|
|
17
|
-
"create_method": {
|
|
18
|
-
"name": "create_by_patient",
|
|
19
|
-
"kwargs": {
|
|
20
|
-
"sample_type": "generic"
|
|
21
|
-
}
|
|
22
|
-
}
|
|
1
|
+
- model: endoreg_db.case_template_rule
|
|
2
|
+
fields:
|
|
3
|
+
name: "create-patient_lab_sample-default"
|
|
4
|
+
rule_type: "create-object"
|
|
5
|
+
target_model: "PatientLabSample"
|
|
6
|
+
parent_field: "patient"
|
|
7
|
+
chained_rules: [
|
|
8
|
+
"patient_lab_sample-add_value-sodium-default",
|
|
9
|
+
"patient_lab_sample-add_value-potassium-default",
|
|
10
|
+
"patient_lab_sample-add_value-egfr-default",
|
|
11
|
+
"patient_lab_sample-add_value-hemoglobin-default",
|
|
12
|
+
"patient_lab_sample-add_value-hematocrit-default",
|
|
13
|
+
"patient_lab_sample-add_value-platelets-default",
|
|
14
|
+
"patient_lab_sample-add_value-white_blood_cells-default"
|
|
15
|
+
]
|
|
16
|
+
extra_parameters: {
|
|
17
|
+
"create_method": {
|
|
18
|
+
"name": "create_by_patient",
|
|
19
|
+
"kwargs": {
|
|
20
|
+
"sample_type": "generic"
|
|
21
|
+
}
|
|
22
|
+
}
|
|
23
23
|
}
|
|
@@ -1,19 +1,19 @@
|
|
|
1
|
-
- model: endoreg_db.case_template_rule
|
|
2
|
-
fields:
|
|
3
|
-
name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
|
|
4
|
-
rule_type: "create-object"
|
|
5
|
-
target_model: "PatientMedication"
|
|
6
|
-
parent_field: "patient"
|
|
7
|
-
|
|
8
|
-
chained_rules: [
|
|
9
|
-
|
|
10
|
-
]
|
|
11
|
-
|
|
12
|
-
extra_parameters: {
|
|
13
|
-
"create_method": {
|
|
14
|
-
"name": "create_by_patient_and_indication_type",
|
|
15
|
-
"kwargs": {
|
|
16
|
-
"indication_type": "thromboembolism-prevention-non_valvular_af"
|
|
17
|
-
}
|
|
18
|
-
}
|
|
1
|
+
- model: endoreg_db.case_template_rule
|
|
2
|
+
fields:
|
|
3
|
+
name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
|
|
4
|
+
rule_type: "create-object"
|
|
5
|
+
target_model: "PatientMedication"
|
|
6
|
+
parent_field: "patient"
|
|
7
|
+
|
|
8
|
+
chained_rules: [
|
|
9
|
+
|
|
10
|
+
]
|
|
11
|
+
|
|
12
|
+
extra_parameters: {
|
|
13
|
+
"create_method": {
|
|
14
|
+
"name": "create_by_patient_and_indication_type",
|
|
15
|
+
"kwargs": {
|
|
16
|
+
"indication_type": "thromboembolism-prevention-non_valvular_af"
|
|
17
|
+
}
|
|
18
|
+
}
|
|
19
19
|
}
|
endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml
CHANGED
|
@@ -1,19 +1,19 @@
|
|
|
1
|
-
- model: endoreg_db.case_template_rule
|
|
2
|
-
fields:
|
|
3
|
-
name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
|
|
4
|
-
rule_type: "create-object"
|
|
5
|
-
target_model: "PatientMedicationSchedule"
|
|
6
|
-
parent_field: "patient"
|
|
7
|
-
|
|
8
|
-
chained_rules: [
|
|
9
|
-
|
|
10
|
-
]
|
|
11
|
-
|
|
12
|
-
extra_parameters: {
|
|
13
|
-
"create_method": {
|
|
14
|
-
"name": "create_by_patient_and_indication_type",
|
|
15
|
-
"kwargs": {
|
|
16
|
-
"indication_type": "thromboembolism-prevention-non_valvular_af"
|
|
17
|
-
}
|
|
18
|
-
}
|
|
1
|
+
- model: endoreg_db.case_template_rule
|
|
2
|
+
fields:
|
|
3
|
+
name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
|
|
4
|
+
rule_type: "create-object"
|
|
5
|
+
target_model: "PatientMedicationSchedule"
|
|
6
|
+
parent_field: "patient"
|
|
7
|
+
|
|
8
|
+
chained_rules: [
|
|
9
|
+
|
|
10
|
+
]
|
|
11
|
+
|
|
12
|
+
extra_parameters: {
|
|
13
|
+
"create_method": {
|
|
14
|
+
"name": "create_by_patient_and_indication_type",
|
|
15
|
+
"kwargs": {
|
|
16
|
+
"indication_type": "thromboembolism-prevention-non_valvular_af"
|
|
17
|
+
}
|
|
18
|
+
}
|
|
19
19
|
}
|