endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- endoreg_db/admin.py +3 -3
- endoreg_db/apps.py +6 -6
- endoreg_db/data/__init__.py +67 -64
- endoreg_db/data/active_model/data.yaml +2 -2
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
- endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
- endoreg_db/data/case_template/template/base.yaml +7 -7
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
- endoreg_db/data/case_template/tmp/_rule_value +13 -13
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
- endoreg_db/data/center/data.yaml +59 -59
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
- endoreg_db/data/disease/cardiovascular.yaml +37 -37
- endoreg_db/data/disease/hepatology.yaml +4 -4
- endoreg_db/data/disease/misc.yaml +5 -5
- endoreg_db/data/disease/renal.yaml +4 -4
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
- endoreg_db/data/distribution/date/patient.yaml +6 -6
- endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
- endoreg_db/data/endoscope_type/data.yaml +10 -10
- endoreg_db/data/endoscopy_processor/data.yaml +45 -45
- endoreg_db/data/event/cardiology.yaml +27 -27
- endoreg_db/data/event/neurology.yaml +13 -13
- endoreg_db/data/event/surgery.yaml +12 -12
- endoreg_db/data/event/thrombembolism.yaml +19 -19
- endoreg_db/data/examination/examinations/data.yaml +65 -65
- endoreg_db/data/examination/time/data.yaml +47 -47
- endoreg_db/data/examination/time-type/data.yaml +7 -7
- endoreg_db/data/examination/type/data.yaml +5 -5
- endoreg_db/data/gender/data.yaml +18 -18
- endoreg_db/data/information_source/data.yaml +30 -30
- endoreg_db/data/information_source/medication.yaml +5 -5
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
- endoreg_db/data/lab_value/coagulation.yaml +48 -48
- endoreg_db/data/lab_value/electrolytes.yaml +189 -189
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
- endoreg_db/data/lab_value/hematology.yaml +169 -169
- endoreg_db/data/lab_value/hormones.yaml +53 -53
- endoreg_db/data/lab_value/lipids.yaml +44 -44
- endoreg_db/data/lab_value/misc.yaml +30 -30
- endoreg_db/data/lab_value/renal_function.yaml +10 -10
- endoreg_db/data/label/label/data.yaml +62 -62
- endoreg_db/data/label/label-set/data.yaml +17 -17
- endoreg_db/data/label/label-type/data.yaml +6 -6
- endoreg_db/data/medication/anticoagulation.yaml +64 -64
- endoreg_db/data/medication/tah.yaml +69 -69
- endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
- endoreg_db/data/medication_indication_type/data.yaml +10 -10
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
- endoreg_db/data/medication_intake_time/base.yaml +30 -30
- endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
- endoreg_db/data/medication_schedule/ass.yaml +12 -12
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
- endoreg_db/data/model_type/data.yaml +6 -6
- endoreg_db/data/network_device/data.yaml +17 -0
- endoreg_db/data/network_device_type/data.yaml +8 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
- endoreg_db/data/pdf_type/data.yaml +28 -28
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
- endoreg_db/data/profession/data.yaml +70 -70
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
- endoreg_db/data/unit/concentration.yaml +92 -92
- endoreg_db/data/unit/data.yaml +17 -17
- endoreg_db/data/unit/length.yaml +30 -30
- endoreg_db/data/unit/misc.yaml +19 -19
- endoreg_db/data/unit/rate.yaml +5 -5
- endoreg_db/data/unit/time.yaml +12 -12
- endoreg_db/data/unit/volume.yaml +35 -35
- endoreg_db/data/unit/weight.yaml +37 -37
- endoreg_db/data/waste/data.yaml +11 -11
- endoreg_db/forms/__init__.py +2 -2
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
- endoreg_db/forms/settings/__init__.py +8 -8
- endoreg_db/forms/unit.py +5 -5
- endoreg_db/management/commands/_load_model_template.py +40 -40
- endoreg_db/management/commands/delete_all.py +18 -18
- endoreg_db/management/commands/delete_legacy_images.py +19 -19
- endoreg_db/management/commands/delete_legacy_videos.py +16 -16
- endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
- endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
- endoreg_db/management/commands/fix_auth_permission.py +20 -20
- endoreg_db/management/commands/import_legacy_images.py +94 -94
- endoreg_db/management/commands/import_legacy_videos.py +76 -76
- endoreg_db/management/commands/load_active_model_data.py +44 -44
- endoreg_db/management/commands/load_ai_model_data.py +44 -44
- endoreg_db/management/commands/load_base_db_data.py +132 -128
- endoreg_db/management/commands/load_center_data.py +42 -42
- endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
- endoreg_db/management/commands/load_disease_classification_data.py +40 -40
- endoreg_db/management/commands/load_disease_data.py +39 -39
- endoreg_db/management/commands/load_distribution_data.py +65 -65
- endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
- endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
- endoreg_db/management/commands/load_event_data.py +40 -40
- endoreg_db/management/commands/load_examination_data.py +74 -74
- endoreg_db/management/commands/load_g_play_data.py +112 -112
- endoreg_db/management/commands/load_gender_data.py +43 -43
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
- endoreg_db/management/commands/load_information_source.py +44 -44
- endoreg_db/management/commands/load_lab_value_data.py +49 -49
- endoreg_db/management/commands/load_label_data.py +66 -66
- endoreg_db/management/commands/load_medication_data.py +40 -40
- endoreg_db/management/commands/load_medication_indication_data.py +62 -62
- endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
- endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
- endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
- endoreg_db/management/commands/load_network_data.py +49 -0
- endoreg_db/management/commands/load_pdf_type_data.py +60 -60
- endoreg_db/management/commands/load_profession_data.py +43 -43
- endoreg_db/management/commands/load_report_reader_flag.py +45 -45
- endoreg_db/management/commands/load_unit_data.py +45 -45
- endoreg_db/management/commands/load_user_groups.py +28 -28
- endoreg_db/management/commands/register_ai_model.py +65 -65
- endoreg_db/management/commands/reset_celery_schedule.py +9 -9
- endoreg_db/migrations/0001_initial.py +582 -582
- endoreg_db/migrations/0002_rawvideofile.py +26 -26
- endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
- endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
- endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
- endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
- endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
- endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
- endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
- endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
- endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
- endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
- endoreg_db/migrations/0013_rawpdffile.py +31 -31
- endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
- endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
- endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
- endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
- endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
- endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
- endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
- endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
- endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
- endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
- endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
- endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
- endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
- endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
- endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
- endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
- endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
- endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
- endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
- endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
- endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
- endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
- endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
- endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
- endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
- endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
- endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
- endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
- endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
- endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
- endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
- endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
- endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
- endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
- endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
- endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
- endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
- endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
- endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
- endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
- endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
- endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
- endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
- endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
- endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
- endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
- endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
- endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
- endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
- endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
- endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
- endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
- endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
- endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
- endoreg_db/models/__init__.py +75 -74
- endoreg_db/models/ai_model/__init__.py +3 -3
- endoreg_db/models/ai_model/active_model.py +9 -9
- endoreg_db/models/ai_model/model_meta.py +24 -24
- endoreg_db/models/ai_model/model_type.py +25 -25
- endoreg_db/models/ai_model/utils.py +8 -8
- endoreg_db/models/annotation/__init__.py +1 -1
- endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
- endoreg_db/models/annotation/image_classification.py +26 -26
- endoreg_db/models/case_template/__init__.py +5 -5
- endoreg_db/models/case_template/case_template.py +81 -81
- endoreg_db/models/case_template/case_template_rule.py +276 -276
- endoreg_db/models/case_template/case_template_rule_value.py +73 -73
- endoreg_db/models/case_template/case_template_type.py +27 -27
- endoreg_db/models/center/__init__.py +4 -4
- endoreg_db/models/center/center.py +24 -24
- endoreg_db/models/center/center_product.py +33 -33
- endoreg_db/models/center/center_resource.py +18 -18
- endoreg_db/models/center/center_waste.py +10 -10
- endoreg_db/models/data_file/__init__.py +5 -5
- endoreg_db/models/data_file/base_classes/__init__.py +2 -2
- endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
- endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
- endoreg_db/models/data_file/frame.py +45 -45
- endoreg_db/models/data_file/import_classes/__init__.py +31 -31
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
- endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
- endoreg_db/models/data_file/metadata/__init__.py +3 -3
- endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
- endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
- endoreg_db/models/data_file/metadata/video_meta.py +132 -132
- endoreg_db/models/data_file/report_file.py +89 -89
- endoreg_db/models/data_file/video/__init__.py +6 -6
- endoreg_db/models/data_file/video/import_meta.py +25 -25
- endoreg_db/models/data_file/video/video.py +25 -25
- endoreg_db/models/data_file/video_segment.py +107 -107
- endoreg_db/models/disease.py +55 -55
- endoreg_db/models/emission/emission_factor.py +19 -19
- endoreg_db/models/event.py +21 -21
- endoreg_db/models/examination/__init__.py +3 -3
- endoreg_db/models/examination/examination.py +26 -26
- endoreg_db/models/examination/examination_time.py +27 -27
- endoreg_db/models/examination/examination_time_type.py +24 -24
- endoreg_db/models/examination/examination_type.py +18 -18
- endoreg_db/models/hardware/__init__.py +1 -1
- endoreg_db/models/hardware/endoscope.py +44 -44
- endoreg_db/models/hardware/endoscopy_processor.py +143 -143
- endoreg_db/models/information_source.py +29 -29
- endoreg_db/models/label/label.py +84 -84
- endoreg_db/models/laboratory/lab_value.py +102 -102
- endoreg_db/models/legacy_data/__init__.py +3 -3
- endoreg_db/models/legacy_data/image.py +34 -34
- endoreg_db/models/medication/medication.py +148 -148
- endoreg_db/models/network/__init__.py +2 -0
- endoreg_db/models/network/network_device.py +27 -0
- endoreg_db/models/network/network_device_type.py +23 -0
- endoreg_db/models/other/__init__.py +4 -4
- endoreg_db/models/other/distribution.py +215 -215
- endoreg_db/models/other/material.py +16 -16
- endoreg_db/models/other/resource.py +17 -17
- endoreg_db/models/other/transport_route.py +20 -20
- endoreg_db/models/other/waste.py +20 -20
- endoreg_db/models/patient_examination/__init__.py +35 -35
- endoreg_db/models/permissions/__init__.py +44 -44
- endoreg_db/models/persons/__init__.py +6 -6
- endoreg_db/models/persons/examiner/__init__.py +1 -1
- endoreg_db/models/persons/examiner/examiner.py +15 -15
- endoreg_db/models/persons/examiner/examiner_type.py +1 -1
- endoreg_db/models/persons/first_name.py +17 -17
- endoreg_db/models/persons/gender.py +22 -22
- endoreg_db/models/persons/last_name.py +19 -19
- endoreg_db/models/persons/patient/__init__.py +7 -7
- endoreg_db/models/persons/patient/case/case.py +30 -30
- endoreg_db/models/persons/patient/patient.py +216 -216
- endoreg_db/models/persons/patient/patient_disease.py +16 -16
- endoreg_db/models/persons/patient/patient_event.py +22 -22
- endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
- endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
- endoreg_db/models/persons/patient/patient_medication.py +43 -43
- endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
- endoreg_db/models/persons/person.py +31 -31
- endoreg_db/models/persons/portal_user_information.py +27 -27
- endoreg_db/models/prediction/__init__.py +1 -1
- endoreg_db/models/prediction/image_classification.py +37 -37
- endoreg_db/models/prediction/video_prediction_meta.py +244 -244
- endoreg_db/models/product/__init__.py +4 -4
- endoreg_db/models/product/product.py +97 -97
- endoreg_db/models/product/product_group.py +19 -19
- endoreg_db/models/product/product_material.py +24 -24
- endoreg_db/models/product/product_weight.py +26 -26
- endoreg_db/models/product/reference_product.py +99 -99
- endoreg_db/models/questionnaires/__init__.py +114 -114
- endoreg_db/models/quiz/__init__.py +1 -1
- endoreg_db/models/quiz/quiz_answer.py +41 -41
- endoreg_db/models/quiz/quiz_question.py +54 -54
- endoreg_db/models/report_reader/__init__.py +1 -1
- endoreg_db/models/report_reader/report_reader_config.py +53 -53
- endoreg_db/models/report_reader/report_reader_flag.py +19 -19
- endoreg_db/models/rules/__init__.py +4 -4
- endoreg_db/models/rules/rule.py +23 -23
- endoreg_db/models/rules/rule_applicator.py +224 -224
- endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
- endoreg_db/models/rules/rule_type.py +21 -21
- endoreg_db/models/rules/ruleset.py +19 -19
- endoreg_db/models/unit.py +21 -21
- endoreg_db/queries/__init__.py +4 -4
- endoreg_db/queries/annotations/__init__.py +2 -2
- endoreg_db/queries/annotations/legacy.py +159 -159
- endoreg_db/queries/get/__init__.py +5 -5
- endoreg_db/queries/get/center.py +42 -42
- endoreg_db/queries/get/model.py +13 -13
- endoreg_db/queries/get/patient.py +14 -14
- endoreg_db/queries/get/patient_examination.py +20 -20
- endoreg_db/queries/get/report_file.py +33 -33
- endoreg_db/queries/get/video.py +31 -31
- endoreg_db/serializers/__init__.py +9 -9
- endoreg_db/serializers/ai_model.py +18 -18
- endoreg_db/serializers/annotation.py +17 -17
- endoreg_db/serializers/center.py +11 -11
- endoreg_db/serializers/examination.py +32 -32
- endoreg_db/serializers/frame.py +13 -13
- endoreg_db/serializers/hardware.py +20 -20
- endoreg_db/serializers/label.py +22 -22
- endoreg_db/serializers/patient.py +10 -10
- endoreg_db/serializers/prediction.py +15 -15
- endoreg_db/serializers/report_file.py +7 -7
- endoreg_db/serializers/video.py +27 -27
- endoreg_db/tests.py +3 -3
- endoreg_db/utils/cropping.py +28 -28
- endoreg_db/utils/dataloader.py +92 -92
- endoreg_db/utils/file_operations.py +30 -30
- endoreg_db/utils/hashs.py +33 -33
- endoreg_db/utils/legacy_ocr.py +201 -201
- endoreg_db/utils/ocr.py +197 -197
- endoreg_db/utils/uuid.py +4 -4
- endoreg_db/utils/video_metadata.py +87 -87
- endoreg_db/views.py +3 -3
- {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
- {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
- endoreg_db-0.3.7.dist-info/RECORD +363 -0
- {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
- endoreg_db-0.3.6.dist-info/RECORD +0 -357
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from django.core.management.base import BaseCommand
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from ...utils import load_model_data_from_yaml
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from ...models import Center, FirstName, LastName
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from ...data import CENTER_DATA_DIR
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SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
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MODEL_0 = Center
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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]
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IMPORT_METADATA = {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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help='Display verbose output',
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def handle(self, *args, **options):
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verbose = options['verbose']
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load_model_data_from_yaml(
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from django.core.management.base import BaseCommand
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from ...utils import load_model_data_from_yaml
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from ...models import Center, FirstName, LastName
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from ...data import CENTER_DATA_DIR
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SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
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MODEL_0 = Center
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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IMPORT_METADATA = {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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def add_arguments(self, parser):
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parser.add_argument(
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action='store_true',
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help='Display verbose output',
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def handle(self, *args, **options):
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verbose = options['verbose']
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for model_name in IMPORT_MODELS:
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_metadata = IMPORT_METADATA[model_name]
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load_model_data_from_yaml(
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verbose
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from django.core.management.base import BaseCommand
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from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
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from ...utils import load_model_data_from_yaml
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from endoreg_db.models import DiseaseClassification
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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IMPORT_METADATA = {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
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"foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
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}
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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def add_arguments(self, parser):
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def handle(self, *args, **options):
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verbose = options['verbose']
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load_model_data_from_yaml(
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self,
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model_name,
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_metadata,
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verbose
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from django.core.management.base import BaseCommand
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from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
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from ...utils import load_model_data_from_yaml
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from ...data import DISEASE_CLASSIFICATION_CHOICE_DATA_DIR as SOURCE_DIR
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from endoreg_db.models import DiseaseClassification
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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]
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IMPORT_METADATA = {
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MODEL_0.__name__: {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
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"foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
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}
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}
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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def add_arguments(self, parser):
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parser.add_argument(
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'--verbose',
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action='store_true',
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help='Display verbose output',
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)
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def handle(self, *args, **options):
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verbose = options['verbose']
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for model_name in IMPORT_MODELS:
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_metadata = IMPORT_METADATA[model_name]
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load_model_data_from_yaml(
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self,
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model_name,
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_metadata,
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verbose
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from django.core.management.base import BaseCommand
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from endoreg_db.models import DiseaseClassification as MODEL_0
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from ...utils import load_model_data_from_yaml
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from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
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from endoreg_db.models import Disease
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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]
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IMPORT_METADATA = {
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MODEL_0.__name__: {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": ["disease"], # e.g. ["intervention_types"]
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"foreign_key_models": [Disease] # e.g. [InterventionType]
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}
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}
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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def add_arguments(self, parser):
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parser.add_argument(
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'--verbose',
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action='store_true',
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help='Display verbose output',
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)
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def handle(self, *args, **options):
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verbose = options['verbose']
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for model_name in IMPORT_MODELS:
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_metadata = IMPORT_METADATA[model_name]
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load_model_data_from_yaml(
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self,
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model_name,
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_metadata,
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verbose
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from django.core.management.base import BaseCommand
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from endoreg_db.models import DiseaseClassification as MODEL_0
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from ...utils import load_model_data_from_yaml
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from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
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from endoreg_db.models import Disease
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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]
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IMPORT_METADATA = {
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MODEL_0.__name__: {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": ["disease"], # e.g. ["intervention_types"]
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"foreign_key_models": [Disease] # e.g. [InterventionType]
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}
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}
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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def add_arguments(self, parser):
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parser.add_argument(
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'--verbose',
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action='store_true',
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help='Display verbose output',
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)
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def handle(self, *args, **options):
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verbose = options['verbose']
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for model_name in IMPORT_MODELS:
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_metadata = IMPORT_METADATA[model_name]
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load_model_data_from_yaml(
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self,
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model_name,
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_metadata,
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verbose
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)
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@@ -1,40 +1,40 @@
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from django.core.management.base import BaseCommand
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from endoreg_db.models import Disease as MODEL_0
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from ...utils import load_model_data_from_yaml
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from ...data import DISEASE_DATA_DIR as SOURCE_DIR
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IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
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MODEL_0.__name__,
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]
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IMPORT_METADATA = {
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MODEL_0.__name__: {
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"dir": SOURCE_DIR, # e.g. "interventions"
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"model": MODEL_0, # e.g. Intervention
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"foreign_keys": [], # e.g. ["intervention_types"]
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"foreign_key_models": [] # e.g. [InterventionType]
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}
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}
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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def add_arguments(self, parser):
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parser.add_argument(
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'--verbose',
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action='store_true',
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help='Display verbose output',
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)
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def handle(self, *args, **options):
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verbose = options['verbose']
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for model_name in IMPORT_MODELS:
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_metadata = IMPORT_METADATA[model_name]
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load_model_data_from_yaml(
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self,
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model_name,
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38
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_metadata,
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39
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verbose
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1
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from django.core.management.base import BaseCommand
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2
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from endoreg_db.models import Disease as MODEL_0
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3
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from ...utils import load_model_data_from_yaml
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4
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from ...data import DISEASE_DATA_DIR as SOURCE_DIR
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MODEL_0.__name__,
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]
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class Command(BaseCommand):
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into the Intervention and InterventionType model"""
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from django.core.management.base import BaseCommand
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from endoreg_db.models import (
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NumericValueDistribution,
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SingleCategoricalValueDistribution,
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MultipleCategoricalValueDistribution,
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DateValueDistribution
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)
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from collections import OrderedDict
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from ...utils import load_model_data_from_yaml
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from ...data import (
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DISTRIBUTION_NUMERIC_DATA_DIR,
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DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
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DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
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DISTRIBUTION_DATE_DATA_DIR,
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)
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IMPORT_METADATA = OrderedDict({
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"dir": DISTRIBUTION_NUMERIC_DATA_DIR,
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"model": NumericValueDistribution,
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},
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"model": SingleCategoricalValueDistribution,
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})
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class Command(BaseCommand):
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help = """Load all .yaml files in the data/intervention directory
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into the Intervention and InterventionType model"""
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def add_arguments(self, parser):
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action='store_true',
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help='Display verbose output',
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def handle(self, *args, **options):
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load_model_data_from_yaml(
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self,
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model_name,
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_metadata,
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verbose
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from django.core.management.base import BaseCommand
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from endoreg_db.models import (
|
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3
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NumericValueDistribution,
|
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4
|
+
SingleCategoricalValueDistribution,
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5
|
+
MultipleCategoricalValueDistribution,
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+
DateValueDistribution
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+
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)
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from collections import OrderedDict
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from ...utils import load_model_data_from_yaml
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from ...data import (
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DISTRIBUTION_NUMERIC_DATA_DIR,
|
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DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
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DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
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DISTRIBUTION_DATE_DATA_DIR,
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)
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IMPORT_METADATA = OrderedDict({
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NumericValueDistribution.__name__: {
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"dir": DISTRIBUTION_NUMERIC_DATA_DIR,
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"model": NumericValueDistribution,
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"foreign_keys": [],
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"foreign_key_models": []
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},
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SingleCategoricalValueDistribution.__name__: {
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"dir": DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
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"model": SingleCategoricalValueDistribution,
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"foreign_keys": [],
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"foreign_key_models": []
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},
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MultipleCategoricalValueDistribution.__name__: {
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"dir": DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
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"model": MultipleCategoricalValueDistribution,
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"foreign_keys": [],
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"foreign_key_models": []
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},
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DateValueDistribution.__name__: {
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"dir": DISTRIBUTION_DATE_DATA_DIR,
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"model": DateValueDistribution,
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"foreign_keys": [],
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"foreign_key_models": []
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},
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})
|
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|
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+
class Command(BaseCommand):
|
|
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help = """Load all .yaml files in the data/intervention directory
|
|
48
|
+
into the Intervention and InterventionType model"""
|
|
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|
|
50
|
+
def add_arguments(self, parser):
|
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parser.add_argument(
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'--verbose',
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action='store_true',
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help='Display verbose output',
|
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+
)
|
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+
|
|
57
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+
def handle(self, *args, **options):
|
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verbose = options['verbose']
|
|
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|
+
for model_name in IMPORT_METADATA.keys():
|
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_metadata = IMPORT_METADATA[model_name]
|
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load_model_data_from_yaml(
|
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self,
|
|
63
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model_name,
|
|
64
|
+
_metadata,
|
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verbose
|
|
66
66
|
)
|
|
@@ -1,45 +1,45 @@
|
|
|
1
|
-
from django.conf import settings
|
|
2
|
-
import os
|
|
3
|
-
from django.core.management.base import BaseCommand
|
|
4
|
-
from ...models import EndoscopeType
|
|
5
|
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from ...utils import load_model_data_from_yaml
|
|
6
|
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from ...data import ENDOSCOPE_TYPE_DATA_DIR
|
|
7
|
-
|
|
8
|
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SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
|
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9
|
-
|
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10
|
-
MODEL_0 = EndoscopeType
|
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11
|
-
|
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12
|
-
IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
|
|
13
|
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MODEL_0.__name__,
|
|
14
|
-
]
|
|
15
|
-
|
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16
|
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IMPORT_METADATA = {
|
|
17
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MODEL_0.__name__: {
|
|
18
|
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"dir": SOURCE_DIR, # e.g. "interventions"
|
|
19
|
-
"model": MODEL_0, # e.g. Intervention
|
|
20
|
-
"foreign_keys": [], # e.g. ["intervention_types"]
|
|
21
|
-
"foreign_key_models": [] # e.g. [InterventionType]
|
|
22
|
-
}
|
|
23
|
-
}
|
|
24
|
-
|
|
25
|
-
class Command(BaseCommand):
|
|
26
|
-
help = """Load all .yaml files in the data/intervention directory
|
|
27
|
-
into the Intervention and InterventionType model"""
|
|
28
|
-
|
|
29
|
-
def add_arguments(self, parser):
|
|
30
|
-
parser.add_argument(
|
|
31
|
-
'--verbose',
|
|
32
|
-
action='store_true',
|
|
33
|
-
help='Display verbose output',
|
|
34
|
-
)
|
|
35
|
-
|
|
36
|
-
def handle(self, *args, **options):
|
|
37
|
-
verbose = options['verbose']
|
|
38
|
-
for model_name in IMPORT_MODELS:
|
|
39
|
-
_metadata = IMPORT_METADATA[model_name]
|
|
40
|
-
load_model_data_from_yaml(
|
|
41
|
-
self,
|
|
42
|
-
model_name,
|
|
43
|
-
_metadata,
|
|
44
|
-
verbose
|
|
1
|
+
from django.conf import settings
|
|
2
|
+
import os
|
|
3
|
+
from django.core.management.base import BaseCommand
|
|
4
|
+
from ...models import EndoscopeType
|
|
5
|
+
from ...utils import load_model_data_from_yaml
|
|
6
|
+
from ...data import ENDOSCOPE_TYPE_DATA_DIR
|
|
7
|
+
|
|
8
|
+
SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
|
|
9
|
+
|
|
10
|
+
MODEL_0 = EndoscopeType
|
|
11
|
+
|
|
12
|
+
IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
|
|
13
|
+
MODEL_0.__name__,
|
|
14
|
+
]
|
|
15
|
+
|
|
16
|
+
IMPORT_METADATA = {
|
|
17
|
+
MODEL_0.__name__: {
|
|
18
|
+
"dir": SOURCE_DIR, # e.g. "interventions"
|
|
19
|
+
"model": MODEL_0, # e.g. Intervention
|
|
20
|
+
"foreign_keys": [], # e.g. ["intervention_types"]
|
|
21
|
+
"foreign_key_models": [] # e.g. [InterventionType]
|
|
22
|
+
}
|
|
23
|
+
}
|
|
24
|
+
|
|
25
|
+
class Command(BaseCommand):
|
|
26
|
+
help = """Load all .yaml files in the data/intervention directory
|
|
27
|
+
into the Intervention and InterventionType model"""
|
|
28
|
+
|
|
29
|
+
def add_arguments(self, parser):
|
|
30
|
+
parser.add_argument(
|
|
31
|
+
'--verbose',
|
|
32
|
+
action='store_true',
|
|
33
|
+
help='Display verbose output',
|
|
34
|
+
)
|
|
35
|
+
|
|
36
|
+
def handle(self, *args, **options):
|
|
37
|
+
verbose = options['verbose']
|
|
38
|
+
for model_name in IMPORT_MODELS:
|
|
39
|
+
_metadata = IMPORT_METADATA[model_name]
|
|
40
|
+
load_model_data_from_yaml(
|
|
41
|
+
self,
|
|
42
|
+
model_name,
|
|
43
|
+
_metadata,
|
|
44
|
+
verbose
|
|
45
45
|
)
|
|
@@ -1,45 +1,45 @@
|
|
|
1
|
-
from django.conf import settings
|
|
2
|
-
import os
|
|
3
|
-
from django.core.management.base import BaseCommand
|
|
4
|
-
from ...models import EndoscopyProcessor
|
|
5
|
-
from ...utils import load_model_data_from_yaml
|
|
6
|
-
from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
|
|
7
|
-
|
|
8
|
-
SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
|
|
9
|
-
|
|
10
|
-
MODEL_0 = EndoscopyProcessor
|
|
11
|
-
|
|
12
|
-
IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
|
|
13
|
-
MODEL_0.__name__,
|
|
14
|
-
]
|
|
15
|
-
|
|
16
|
-
IMPORT_METADATA = {
|
|
17
|
-
MODEL_0.__name__: {
|
|
18
|
-
"dir": SOURCE_DIR, # e.g. "interventions"
|
|
19
|
-
"model": MODEL_0, # e.g. Intervention
|
|
20
|
-
"foreign_keys": [], # e.g. ["intervention_types"]
|
|
21
|
-
"foreign_key_models": [] # e.g. [InterventionType]
|
|
22
|
-
}
|
|
23
|
-
}
|
|
24
|
-
|
|
25
|
-
class Command(BaseCommand):
|
|
26
|
-
help = """Load all .yaml files in the data/intervention directory
|
|
27
|
-
into the Intervention and InterventionType model"""
|
|
28
|
-
|
|
29
|
-
def add_arguments(self, parser):
|
|
30
|
-
parser.add_argument(
|
|
31
|
-
'--verbose',
|
|
32
|
-
action='store_true',
|
|
33
|
-
help='Display verbose output',
|
|
34
|
-
)
|
|
35
|
-
|
|
36
|
-
def handle(self, *args, **options):
|
|
37
|
-
verbose = options['verbose']
|
|
38
|
-
for model_name in IMPORT_MODELS:
|
|
39
|
-
_metadata = IMPORT_METADATA[model_name]
|
|
40
|
-
load_model_data_from_yaml(
|
|
41
|
-
self,
|
|
42
|
-
model_name,
|
|
43
|
-
_metadata,
|
|
44
|
-
verbose
|
|
1
|
+
from django.conf import settings
|
|
2
|
+
import os
|
|
3
|
+
from django.core.management.base import BaseCommand
|
|
4
|
+
from ...models import EndoscopyProcessor
|
|
5
|
+
from ...utils import load_model_data_from_yaml
|
|
6
|
+
from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
|
|
7
|
+
|
|
8
|
+
SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
|
|
9
|
+
|
|
10
|
+
MODEL_0 = EndoscopyProcessor
|
|
11
|
+
|
|
12
|
+
IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
|
|
13
|
+
MODEL_0.__name__,
|
|
14
|
+
]
|
|
15
|
+
|
|
16
|
+
IMPORT_METADATA = {
|
|
17
|
+
MODEL_0.__name__: {
|
|
18
|
+
"dir": SOURCE_DIR, # e.g. "interventions"
|
|
19
|
+
"model": MODEL_0, # e.g. Intervention
|
|
20
|
+
"foreign_keys": [], # e.g. ["intervention_types"]
|
|
21
|
+
"foreign_key_models": [] # e.g. [InterventionType]
|
|
22
|
+
}
|
|
23
|
+
}
|
|
24
|
+
|
|
25
|
+
class Command(BaseCommand):
|
|
26
|
+
help = """Load all .yaml files in the data/intervention directory
|
|
27
|
+
into the Intervention and InterventionType model"""
|
|
28
|
+
|
|
29
|
+
def add_arguments(self, parser):
|
|
30
|
+
parser.add_argument(
|
|
31
|
+
'--verbose',
|
|
32
|
+
action='store_true',
|
|
33
|
+
help='Display verbose output',
|
|
34
|
+
)
|
|
35
|
+
|
|
36
|
+
def handle(self, *args, **options):
|
|
37
|
+
verbose = options['verbose']
|
|
38
|
+
for model_name in IMPORT_MODELS:
|
|
39
|
+
_metadata = IMPORT_METADATA[model_name]
|
|
40
|
+
load_model_data_from_yaml(
|
|
41
|
+
self,
|
|
42
|
+
model_name,
|
|
43
|
+
_metadata,
|
|
44
|
+
verbose
|
|
45
45
|
)
|