endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/network_device/data.yaml +17 -0
  70. endoreg_db/data/network_device_type/data.yaml +8 -0
  71. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  72. endoreg_db/data/pdf_type/data.yaml +28 -28
  73. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  74. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  75. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  76. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  77. endoreg_db/data/profession/data.yaml +70 -70
  78. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  79. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  80. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  81. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  82. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  83. endoreg_db/data/unit/concentration.yaml +92 -92
  84. endoreg_db/data/unit/data.yaml +17 -17
  85. endoreg_db/data/unit/length.yaml +30 -30
  86. endoreg_db/data/unit/misc.yaml +19 -19
  87. endoreg_db/data/unit/rate.yaml +5 -5
  88. endoreg_db/data/unit/time.yaml +12 -12
  89. endoreg_db/data/unit/volume.yaml +35 -35
  90. endoreg_db/data/unit/weight.yaml +37 -37
  91. endoreg_db/data/waste/data.yaml +11 -11
  92. endoreg_db/forms/__init__.py +2 -2
  93. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  94. endoreg_db/forms/settings/__init__.py +8 -8
  95. endoreg_db/forms/unit.py +5 -5
  96. endoreg_db/management/commands/_load_model_template.py +40 -40
  97. endoreg_db/management/commands/delete_all.py +18 -18
  98. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  99. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  100. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  101. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  102. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  103. endoreg_db/management/commands/import_legacy_images.py +94 -94
  104. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  105. endoreg_db/management/commands/load_active_model_data.py +44 -44
  106. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  107. endoreg_db/management/commands/load_base_db_data.py +132 -128
  108. endoreg_db/management/commands/load_center_data.py +42 -42
  109. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  110. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  111. endoreg_db/management/commands/load_disease_data.py +39 -39
  112. endoreg_db/management/commands/load_distribution_data.py +65 -65
  113. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  114. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  115. endoreg_db/management/commands/load_event_data.py +40 -40
  116. endoreg_db/management/commands/load_examination_data.py +74 -74
  117. endoreg_db/management/commands/load_g_play_data.py +112 -112
  118. endoreg_db/management/commands/load_gender_data.py +43 -43
  119. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  120. endoreg_db/management/commands/load_information_source.py +44 -44
  121. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  122. endoreg_db/management/commands/load_label_data.py +66 -66
  123. endoreg_db/management/commands/load_medication_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  125. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  126. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  128. endoreg_db/management/commands/load_network_data.py +49 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  203. endoreg_db/models/__init__.py +75 -74
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +5 -5
  213. endoreg_db/models/case_template/case_template.py +81 -81
  214. endoreg_db/models/case_template/case_template_rule.py +276 -276
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  216. endoreg_db/models/case_template/case_template_type.py +27 -27
  217. endoreg_db/models/center/__init__.py +4 -4
  218. endoreg_db/models/center/center.py +24 -24
  219. endoreg_db/models/center/center_product.py +33 -33
  220. endoreg_db/models/center/center_resource.py +18 -18
  221. endoreg_db/models/center/center_waste.py +10 -10
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +55 -55
  243. endoreg_db/models/emission/emission_factor.py +19 -19
  244. endoreg_db/models/event.py +21 -21
  245. endoreg_db/models/examination/__init__.py +3 -3
  246. endoreg_db/models/examination/examination.py +26 -26
  247. endoreg_db/models/examination/examination_time.py +27 -27
  248. endoreg_db/models/examination/examination_time_type.py +24 -24
  249. endoreg_db/models/examination/examination_type.py +18 -18
  250. endoreg_db/models/hardware/__init__.py +1 -1
  251. endoreg_db/models/hardware/endoscope.py +44 -44
  252. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  253. endoreg_db/models/information_source.py +29 -29
  254. endoreg_db/models/label/label.py +84 -84
  255. endoreg_db/models/laboratory/lab_value.py +102 -102
  256. endoreg_db/models/legacy_data/__init__.py +3 -3
  257. endoreg_db/models/legacy_data/image.py +34 -34
  258. endoreg_db/models/medication/medication.py +148 -148
  259. endoreg_db/models/network/__init__.py +2 -0
  260. endoreg_db/models/network/network_device.py +27 -0
  261. endoreg_db/models/network/network_device_type.py +23 -0
  262. endoreg_db/models/other/__init__.py +4 -4
  263. endoreg_db/models/other/distribution.py +215 -215
  264. endoreg_db/models/other/material.py +16 -16
  265. endoreg_db/models/other/resource.py +17 -17
  266. endoreg_db/models/other/transport_route.py +20 -20
  267. endoreg_db/models/other/waste.py +20 -20
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +6 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -22
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +7 -7
  278. endoreg_db/models/persons/patient/case/case.py +30 -30
  279. endoreg_db/models/persons/patient/patient.py +216 -216
  280. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  281. endoreg_db/models/persons/patient/patient_event.py +22 -22
  282. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  283. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  284. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  285. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  286. endoreg_db/models/persons/person.py +31 -31
  287. endoreg_db/models/persons/portal_user_information.py +27 -27
  288. endoreg_db/models/prediction/__init__.py +1 -1
  289. endoreg_db/models/prediction/image_classification.py +37 -37
  290. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  291. endoreg_db/models/product/__init__.py +4 -4
  292. endoreg_db/models/product/product.py +97 -97
  293. endoreg_db/models/product/product_group.py +19 -19
  294. endoreg_db/models/product/product_material.py +24 -24
  295. endoreg_db/models/product/product_weight.py +26 -26
  296. endoreg_db/models/product/reference_product.py +99 -99
  297. endoreg_db/models/questionnaires/__init__.py +114 -114
  298. endoreg_db/models/quiz/__init__.py +1 -1
  299. endoreg_db/models/quiz/quiz_answer.py +41 -41
  300. endoreg_db/models/quiz/quiz_question.py +54 -54
  301. endoreg_db/models/report_reader/__init__.py +1 -1
  302. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  303. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  304. endoreg_db/models/rules/__init__.py +4 -4
  305. endoreg_db/models/rules/rule.py +23 -23
  306. endoreg_db/models/rules/rule_applicator.py +224 -224
  307. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  308. endoreg_db/models/rules/rule_type.py +21 -21
  309. endoreg_db/models/rules/ruleset.py +19 -19
  310. endoreg_db/models/unit.py +21 -21
  311. endoreg_db/queries/__init__.py +4 -4
  312. endoreg_db/queries/annotations/__init__.py +2 -2
  313. endoreg_db/queries/annotations/legacy.py +159 -159
  314. endoreg_db/queries/get/__init__.py +5 -5
  315. endoreg_db/queries/get/center.py +42 -42
  316. endoreg_db/queries/get/model.py +13 -13
  317. endoreg_db/queries/get/patient.py +14 -14
  318. endoreg_db/queries/get/patient_examination.py +20 -20
  319. endoreg_db/queries/get/report_file.py +33 -33
  320. endoreg_db/queries/get/video.py +31 -31
  321. endoreg_db/serializers/__init__.py +9 -9
  322. endoreg_db/serializers/ai_model.py +18 -18
  323. endoreg_db/serializers/annotation.py +17 -17
  324. endoreg_db/serializers/center.py +11 -11
  325. endoreg_db/serializers/examination.py +32 -32
  326. endoreg_db/serializers/frame.py +13 -13
  327. endoreg_db/serializers/hardware.py +20 -20
  328. endoreg_db/serializers/label.py +22 -22
  329. endoreg_db/serializers/patient.py +10 -10
  330. endoreg_db/serializers/prediction.py +15 -15
  331. endoreg_db/serializers/report_file.py +7 -7
  332. endoreg_db/serializers/video.py +27 -27
  333. endoreg_db/tests.py +3 -3
  334. endoreg_db/utils/cropping.py +28 -28
  335. endoreg_db/utils/dataloader.py +92 -92
  336. endoreg_db/utils/file_operations.py +30 -30
  337. endoreg_db/utils/hashs.py +33 -33
  338. endoreg_db/utils/legacy_ocr.py +201 -201
  339. endoreg_db/utils/ocr.py +197 -197
  340. endoreg_db/utils/uuid.py +4 -4
  341. endoreg_db/utils/video_metadata.py +87 -87
  342. endoreg_db/views.py +3 -3
  343. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
  344. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
  345. endoreg_db-0.3.7.dist-info/RECORD +363 -0
  346. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
  347. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,43 +1,43 @@
1
- from django.core.management.base import BaseCommand
2
- from ...utils import load_model_data_from_yaml
3
- from ...models import Center, FirstName, LastName
4
- from ...data import CENTER_DATA_DIR
5
-
6
- SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
7
-
8
- MODEL_0 = Center
9
-
10
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
11
- MODEL_0.__name__,
12
- ]
13
-
14
- IMPORT_METADATA = {
15
- MODEL_0.__name__: {
16
- "dir": SOURCE_DIR, # e.g. "interventions"
17
- "model": MODEL_0, # e.g. Intervention
18
- "foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
19
- "foreign_key_models": [FirstName, LastName] # e.g. [InterventionType]
20
- }
21
- }
22
-
23
- class Command(BaseCommand):
24
- help = """Load all .yaml files in the data/intervention directory
25
- into the Intervention and InterventionType model"""
26
-
27
- def add_arguments(self, parser):
28
- parser.add_argument(
29
- '--verbose',
30
- action='store_true',
31
- help='Display verbose output',
32
- )
33
-
34
- def handle(self, *args, **options):
35
- verbose = options['verbose']
36
- for model_name in IMPORT_MODELS:
37
- _metadata = IMPORT_METADATA[model_name]
38
- load_model_data_from_yaml(
39
- self,
40
- model_name,
41
- _metadata,
42
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from ...utils import load_model_data_from_yaml
3
+ from ...models import Center, FirstName, LastName
4
+ from ...data import CENTER_DATA_DIR
5
+
6
+ SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
7
+
8
+ MODEL_0 = Center
9
+
10
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
11
+ MODEL_0.__name__,
12
+ ]
13
+
14
+ IMPORT_METADATA = {
15
+ MODEL_0.__name__: {
16
+ "dir": SOURCE_DIR, # e.g. "interventions"
17
+ "model": MODEL_0, # e.g. Intervention
18
+ "foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
19
+ "foreign_key_models": [FirstName, LastName] # e.g. [InterventionType]
20
+ }
21
+ }
22
+
23
+ class Command(BaseCommand):
24
+ help = """Load all .yaml files in the data/intervention directory
25
+ into the Intervention and InterventionType model"""
26
+
27
+ def add_arguments(self, parser):
28
+ parser.add_argument(
29
+ '--verbose',
30
+ action='store_true',
31
+ help='Display verbose output',
32
+ )
33
+
34
+ def handle(self, *args, **options):
35
+ verbose = options['verbose']
36
+ for model_name in IMPORT_MODELS:
37
+ _metadata = IMPORT_METADATA[model_name]
38
+ load_model_data_from_yaml(
39
+ self,
40
+ model_name,
41
+ _metadata,
42
+ verbose
43
43
  )
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import DISEASE_CLASSIFICATION_CHOICE_DATA_DIR as SOURCE_DIR
5
-
6
- from endoreg_db.models import DiseaseClassification
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
17
- "foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import DISEASE_CLASSIFICATION_CHOICE_DATA_DIR as SOURCE_DIR
5
+
6
+ from endoreg_db.models import DiseaseClassification
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import DiseaseClassification as MODEL_0
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
5
-
6
- from endoreg_db.models import Disease
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": ["disease"], # e.g. ["intervention_types"]
17
- "foreign_key_models": [Disease] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import DiseaseClassification as MODEL_0
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
5
+
6
+ from endoreg_db.models import Disease
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": ["disease"], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [Disease] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,40 +1,40 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import Disease as MODEL_0
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import DISEASE_DATA_DIR as SOURCE_DIR
5
-
6
-
7
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
8
- MODEL_0.__name__,
9
- ]
10
-
11
- IMPORT_METADATA = {
12
- MODEL_0.__name__: {
13
- "dir": SOURCE_DIR, # e.g. "interventions"
14
- "model": MODEL_0, # e.g. Intervention
15
- "foreign_keys": [], # e.g. ["intervention_types"]
16
- "foreign_key_models": [] # e.g. [InterventionType]
17
- }
18
- }
19
-
20
- class Command(BaseCommand):
21
- help = """Load all .yaml files in the data/intervention directory
22
- into the Intervention and InterventionType model"""
23
-
24
- def add_arguments(self, parser):
25
- parser.add_argument(
26
- '--verbose',
27
- action='store_true',
28
- help='Display verbose output',
29
- )
30
-
31
- def handle(self, *args, **options):
32
- verbose = options['verbose']
33
- for model_name in IMPORT_MODELS:
34
- _metadata = IMPORT_METADATA[model_name]
35
- load_model_data_from_yaml(
36
- self,
37
- model_name,
38
- _metadata,
39
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import Disease as MODEL_0
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import DISEASE_DATA_DIR as SOURCE_DIR
5
+
6
+
7
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
8
+ MODEL_0.__name__,
9
+ ]
10
+
11
+ IMPORT_METADATA = {
12
+ MODEL_0.__name__: {
13
+ "dir": SOURCE_DIR, # e.g. "interventions"
14
+ "model": MODEL_0, # e.g. Intervention
15
+ "foreign_keys": [], # e.g. ["intervention_types"]
16
+ "foreign_key_models": [] # e.g. [InterventionType]
17
+ }
18
+ }
19
+
20
+ class Command(BaseCommand):
21
+ help = """Load all .yaml files in the data/intervention directory
22
+ into the Intervention and InterventionType model"""
23
+
24
+ def add_arguments(self, parser):
25
+ parser.add_argument(
26
+ '--verbose',
27
+ action='store_true',
28
+ help='Display verbose output',
29
+ )
30
+
31
+ def handle(self, *args, **options):
32
+ verbose = options['verbose']
33
+ for model_name in IMPORT_MODELS:
34
+ _metadata = IMPORT_METADATA[model_name]
35
+ load_model_data_from_yaml(
36
+ self,
37
+ model_name,
38
+ _metadata,
39
+ verbose
40
40
  )
@@ -1,66 +1,66 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- NumericValueDistribution,
4
- SingleCategoricalValueDistribution,
5
- MultipleCategoricalValueDistribution,
6
- DateValueDistribution
7
-
8
- )
9
- from collections import OrderedDict
10
-
11
- from ...utils import load_model_data_from_yaml
12
- from ...data import (
13
- DISTRIBUTION_NUMERIC_DATA_DIR,
14
- DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
15
- DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
16
- DISTRIBUTION_DATE_DATA_DIR,
17
- )
18
-
19
- IMPORT_METADATA = OrderedDict({
20
- NumericValueDistribution.__name__: {
21
- "dir": DISTRIBUTION_NUMERIC_DATA_DIR,
22
- "model": NumericValueDistribution,
23
- "foreign_keys": [],
24
- "foreign_key_models": []
25
- },
26
- SingleCategoricalValueDistribution.__name__: {
27
- "dir": DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
28
- "model": SingleCategoricalValueDistribution,
29
- "foreign_keys": [],
30
- "foreign_key_models": []
31
- },
32
- MultipleCategoricalValueDistribution.__name__: {
33
- "dir": DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
34
- "model": MultipleCategoricalValueDistribution,
35
- "foreign_keys": [],
36
- "foreign_key_models": []
37
- },
38
- DateValueDistribution.__name__: {
39
- "dir": DISTRIBUTION_DATE_DATA_DIR,
40
- "model": DateValueDistribution,
41
- "foreign_keys": [],
42
- "foreign_key_models": []
43
- },
44
- })
45
-
46
- class Command(BaseCommand):
47
- help = """Load all .yaml files in the data/intervention directory
48
- into the Intervention and InterventionType model"""
49
-
50
- def add_arguments(self, parser):
51
- parser.add_argument(
52
- '--verbose',
53
- action='store_true',
54
- help='Display verbose output',
55
- )
56
-
57
- def handle(self, *args, **options):
58
- verbose = options['verbose']
59
- for model_name in IMPORT_METADATA.keys():
60
- _metadata = IMPORT_METADATA[model_name]
61
- load_model_data_from_yaml(
62
- self,
63
- model_name,
64
- _metadata,
65
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ NumericValueDistribution,
4
+ SingleCategoricalValueDistribution,
5
+ MultipleCategoricalValueDistribution,
6
+ DateValueDistribution
7
+
8
+ )
9
+ from collections import OrderedDict
10
+
11
+ from ...utils import load_model_data_from_yaml
12
+ from ...data import (
13
+ DISTRIBUTION_NUMERIC_DATA_DIR,
14
+ DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
15
+ DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
16
+ DISTRIBUTION_DATE_DATA_DIR,
17
+ )
18
+
19
+ IMPORT_METADATA = OrderedDict({
20
+ NumericValueDistribution.__name__: {
21
+ "dir": DISTRIBUTION_NUMERIC_DATA_DIR,
22
+ "model": NumericValueDistribution,
23
+ "foreign_keys": [],
24
+ "foreign_key_models": []
25
+ },
26
+ SingleCategoricalValueDistribution.__name__: {
27
+ "dir": DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
28
+ "model": SingleCategoricalValueDistribution,
29
+ "foreign_keys": [],
30
+ "foreign_key_models": []
31
+ },
32
+ MultipleCategoricalValueDistribution.__name__: {
33
+ "dir": DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
34
+ "model": MultipleCategoricalValueDistribution,
35
+ "foreign_keys": [],
36
+ "foreign_key_models": []
37
+ },
38
+ DateValueDistribution.__name__: {
39
+ "dir": DISTRIBUTION_DATE_DATA_DIR,
40
+ "model": DateValueDistribution,
41
+ "foreign_keys": [],
42
+ "foreign_key_models": []
43
+ },
44
+ })
45
+
46
+ class Command(BaseCommand):
47
+ help = """Load all .yaml files in the data/intervention directory
48
+ into the Intervention and InterventionType model"""
49
+
50
+ def add_arguments(self, parser):
51
+ parser.add_argument(
52
+ '--verbose',
53
+ action='store_true',
54
+ help='Display verbose output',
55
+ )
56
+
57
+ def handle(self, *args, **options):
58
+ verbose = options['verbose']
59
+ for model_name in IMPORT_METADATA.keys():
60
+ _metadata = IMPORT_METADATA[model_name]
61
+ load_model_data_from_yaml(
62
+ self,
63
+ model_name,
64
+ _metadata,
65
+ verbose
66
66
  )
@@ -1,45 +1,45 @@
1
- from django.conf import settings
2
- import os
3
- from django.core.management.base import BaseCommand
4
- from ...models import EndoscopeType
5
- from ...utils import load_model_data_from_yaml
6
- from ...data import ENDOSCOPE_TYPE_DATA_DIR
7
-
8
- SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
-
10
- MODEL_0 = EndoscopeType
11
-
12
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
- MODEL_0.__name__,
14
- ]
15
-
16
- IMPORT_METADATA = {
17
- MODEL_0.__name__: {
18
- "dir": SOURCE_DIR, # e.g. "interventions"
19
- "model": MODEL_0, # e.g. Intervention
20
- "foreign_keys": [], # e.g. ["intervention_types"]
21
- "foreign_key_models": [] # e.g. [InterventionType]
22
- }
23
- }
24
-
25
- class Command(BaseCommand):
26
- help = """Load all .yaml files in the data/intervention directory
27
- into the Intervention and InterventionType model"""
28
-
29
- def add_arguments(self, parser):
30
- parser.add_argument(
31
- '--verbose',
32
- action='store_true',
33
- help='Display verbose output',
34
- )
35
-
36
- def handle(self, *args, **options):
37
- verbose = options['verbose']
38
- for model_name in IMPORT_MODELS:
39
- _metadata = IMPORT_METADATA[model_name]
40
- load_model_data_from_yaml(
41
- self,
42
- model_name,
43
- _metadata,
44
- verbose
1
+ from django.conf import settings
2
+ import os
3
+ from django.core.management.base import BaseCommand
4
+ from ...models import EndoscopeType
5
+ from ...utils import load_model_data_from_yaml
6
+ from ...data import ENDOSCOPE_TYPE_DATA_DIR
7
+
8
+ SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
+
10
+ MODEL_0 = EndoscopeType
11
+
12
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
+ MODEL_0.__name__,
14
+ ]
15
+
16
+ IMPORT_METADATA = {
17
+ MODEL_0.__name__: {
18
+ "dir": SOURCE_DIR, # e.g. "interventions"
19
+ "model": MODEL_0, # e.g. Intervention
20
+ "foreign_keys": [], # e.g. ["intervention_types"]
21
+ "foreign_key_models": [] # e.g. [InterventionType]
22
+ }
23
+ }
24
+
25
+ class Command(BaseCommand):
26
+ help = """Load all .yaml files in the data/intervention directory
27
+ into the Intervention and InterventionType model"""
28
+
29
+ def add_arguments(self, parser):
30
+ parser.add_argument(
31
+ '--verbose',
32
+ action='store_true',
33
+ help='Display verbose output',
34
+ )
35
+
36
+ def handle(self, *args, **options):
37
+ verbose = options['verbose']
38
+ for model_name in IMPORT_MODELS:
39
+ _metadata = IMPORT_METADATA[model_name]
40
+ load_model_data_from_yaml(
41
+ self,
42
+ model_name,
43
+ _metadata,
44
+ verbose
45
45
  )
@@ -1,45 +1,45 @@
1
- from django.conf import settings
2
- import os
3
- from django.core.management.base import BaseCommand
4
- from ...models import EndoscopyProcessor
5
- from ...utils import load_model_data_from_yaml
6
- from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
7
-
8
- SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
-
10
- MODEL_0 = EndoscopyProcessor
11
-
12
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
- MODEL_0.__name__,
14
- ]
15
-
16
- IMPORT_METADATA = {
17
- MODEL_0.__name__: {
18
- "dir": SOURCE_DIR, # e.g. "interventions"
19
- "model": MODEL_0, # e.g. Intervention
20
- "foreign_keys": [], # e.g. ["intervention_types"]
21
- "foreign_key_models": [] # e.g. [InterventionType]
22
- }
23
- }
24
-
25
- class Command(BaseCommand):
26
- help = """Load all .yaml files in the data/intervention directory
27
- into the Intervention and InterventionType model"""
28
-
29
- def add_arguments(self, parser):
30
- parser.add_argument(
31
- '--verbose',
32
- action='store_true',
33
- help='Display verbose output',
34
- )
35
-
36
- def handle(self, *args, **options):
37
- verbose = options['verbose']
38
- for model_name in IMPORT_MODELS:
39
- _metadata = IMPORT_METADATA[model_name]
40
- load_model_data_from_yaml(
41
- self,
42
- model_name,
43
- _metadata,
44
- verbose
1
+ from django.conf import settings
2
+ import os
3
+ from django.core.management.base import BaseCommand
4
+ from ...models import EndoscopyProcessor
5
+ from ...utils import load_model_data_from_yaml
6
+ from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
7
+
8
+ SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
+
10
+ MODEL_0 = EndoscopyProcessor
11
+
12
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
+ MODEL_0.__name__,
14
+ ]
15
+
16
+ IMPORT_METADATA = {
17
+ MODEL_0.__name__: {
18
+ "dir": SOURCE_DIR, # e.g. "interventions"
19
+ "model": MODEL_0, # e.g. Intervention
20
+ "foreign_keys": [], # e.g. ["intervention_types"]
21
+ "foreign_key_models": [] # e.g. [InterventionType]
22
+ }
23
+ }
24
+
25
+ class Command(BaseCommand):
26
+ help = """Load all .yaml files in the data/intervention directory
27
+ into the Intervention and InterventionType model"""
28
+
29
+ def add_arguments(self, parser):
30
+ parser.add_argument(
31
+ '--verbose',
32
+ action='store_true',
33
+ help='Display verbose output',
34
+ )
35
+
36
+ def handle(self, *args, **options):
37
+ verbose = options['verbose']
38
+ for model_name in IMPORT_MODELS:
39
+ _metadata = IMPORT_METADATA[model_name]
40
+ load_model_data_from_yaml(
41
+ self,
42
+ model_name,
43
+ _metadata,
44
+ verbose
45
45
  )