endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/network_device/data.yaml +17 -0
  70. endoreg_db/data/network_device_type/data.yaml +8 -0
  71. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  72. endoreg_db/data/pdf_type/data.yaml +28 -28
  73. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  74. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  75. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  76. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  77. endoreg_db/data/profession/data.yaml +70 -70
  78. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  79. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  80. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  81. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  82. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  83. endoreg_db/data/unit/concentration.yaml +92 -92
  84. endoreg_db/data/unit/data.yaml +17 -17
  85. endoreg_db/data/unit/length.yaml +30 -30
  86. endoreg_db/data/unit/misc.yaml +19 -19
  87. endoreg_db/data/unit/rate.yaml +5 -5
  88. endoreg_db/data/unit/time.yaml +12 -12
  89. endoreg_db/data/unit/volume.yaml +35 -35
  90. endoreg_db/data/unit/weight.yaml +37 -37
  91. endoreg_db/data/waste/data.yaml +11 -11
  92. endoreg_db/forms/__init__.py +2 -2
  93. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  94. endoreg_db/forms/settings/__init__.py +8 -8
  95. endoreg_db/forms/unit.py +5 -5
  96. endoreg_db/management/commands/_load_model_template.py +40 -40
  97. endoreg_db/management/commands/delete_all.py +18 -18
  98. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  99. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  100. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  101. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  102. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  103. endoreg_db/management/commands/import_legacy_images.py +94 -94
  104. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  105. endoreg_db/management/commands/load_active_model_data.py +44 -44
  106. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  107. endoreg_db/management/commands/load_base_db_data.py +132 -128
  108. endoreg_db/management/commands/load_center_data.py +42 -42
  109. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  110. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  111. endoreg_db/management/commands/load_disease_data.py +39 -39
  112. endoreg_db/management/commands/load_distribution_data.py +65 -65
  113. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  114. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  115. endoreg_db/management/commands/load_event_data.py +40 -40
  116. endoreg_db/management/commands/load_examination_data.py +74 -74
  117. endoreg_db/management/commands/load_g_play_data.py +112 -112
  118. endoreg_db/management/commands/load_gender_data.py +43 -43
  119. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  120. endoreg_db/management/commands/load_information_source.py +44 -44
  121. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  122. endoreg_db/management/commands/load_label_data.py +66 -66
  123. endoreg_db/management/commands/load_medication_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  125. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  126. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  128. endoreg_db/management/commands/load_network_data.py +49 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  203. endoreg_db/models/__init__.py +75 -74
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +5 -5
  213. endoreg_db/models/case_template/case_template.py +81 -81
  214. endoreg_db/models/case_template/case_template_rule.py +276 -276
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  216. endoreg_db/models/case_template/case_template_type.py +27 -27
  217. endoreg_db/models/center/__init__.py +4 -4
  218. endoreg_db/models/center/center.py +24 -24
  219. endoreg_db/models/center/center_product.py +33 -33
  220. endoreg_db/models/center/center_resource.py +18 -18
  221. endoreg_db/models/center/center_waste.py +10 -10
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +55 -55
  243. endoreg_db/models/emission/emission_factor.py +19 -19
  244. endoreg_db/models/event.py +21 -21
  245. endoreg_db/models/examination/__init__.py +3 -3
  246. endoreg_db/models/examination/examination.py +26 -26
  247. endoreg_db/models/examination/examination_time.py +27 -27
  248. endoreg_db/models/examination/examination_time_type.py +24 -24
  249. endoreg_db/models/examination/examination_type.py +18 -18
  250. endoreg_db/models/hardware/__init__.py +1 -1
  251. endoreg_db/models/hardware/endoscope.py +44 -44
  252. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  253. endoreg_db/models/information_source.py +29 -29
  254. endoreg_db/models/label/label.py +84 -84
  255. endoreg_db/models/laboratory/lab_value.py +102 -102
  256. endoreg_db/models/legacy_data/__init__.py +3 -3
  257. endoreg_db/models/legacy_data/image.py +34 -34
  258. endoreg_db/models/medication/medication.py +148 -148
  259. endoreg_db/models/network/__init__.py +2 -0
  260. endoreg_db/models/network/network_device.py +27 -0
  261. endoreg_db/models/network/network_device_type.py +23 -0
  262. endoreg_db/models/other/__init__.py +4 -4
  263. endoreg_db/models/other/distribution.py +215 -215
  264. endoreg_db/models/other/material.py +16 -16
  265. endoreg_db/models/other/resource.py +17 -17
  266. endoreg_db/models/other/transport_route.py +20 -20
  267. endoreg_db/models/other/waste.py +20 -20
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +6 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -22
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +7 -7
  278. endoreg_db/models/persons/patient/case/case.py +30 -30
  279. endoreg_db/models/persons/patient/patient.py +216 -216
  280. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  281. endoreg_db/models/persons/patient/patient_event.py +22 -22
  282. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  283. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  284. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  285. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  286. endoreg_db/models/persons/person.py +31 -31
  287. endoreg_db/models/persons/portal_user_information.py +27 -27
  288. endoreg_db/models/prediction/__init__.py +1 -1
  289. endoreg_db/models/prediction/image_classification.py +37 -37
  290. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  291. endoreg_db/models/product/__init__.py +4 -4
  292. endoreg_db/models/product/product.py +97 -97
  293. endoreg_db/models/product/product_group.py +19 -19
  294. endoreg_db/models/product/product_material.py +24 -24
  295. endoreg_db/models/product/product_weight.py +26 -26
  296. endoreg_db/models/product/reference_product.py +99 -99
  297. endoreg_db/models/questionnaires/__init__.py +114 -114
  298. endoreg_db/models/quiz/__init__.py +1 -1
  299. endoreg_db/models/quiz/quiz_answer.py +41 -41
  300. endoreg_db/models/quiz/quiz_question.py +54 -54
  301. endoreg_db/models/report_reader/__init__.py +1 -1
  302. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  303. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  304. endoreg_db/models/rules/__init__.py +4 -4
  305. endoreg_db/models/rules/rule.py +23 -23
  306. endoreg_db/models/rules/rule_applicator.py +224 -224
  307. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  308. endoreg_db/models/rules/rule_type.py +21 -21
  309. endoreg_db/models/rules/ruleset.py +19 -19
  310. endoreg_db/models/unit.py +21 -21
  311. endoreg_db/queries/__init__.py +4 -4
  312. endoreg_db/queries/annotations/__init__.py +2 -2
  313. endoreg_db/queries/annotations/legacy.py +159 -159
  314. endoreg_db/queries/get/__init__.py +5 -5
  315. endoreg_db/queries/get/center.py +42 -42
  316. endoreg_db/queries/get/model.py +13 -13
  317. endoreg_db/queries/get/patient.py +14 -14
  318. endoreg_db/queries/get/patient_examination.py +20 -20
  319. endoreg_db/queries/get/report_file.py +33 -33
  320. endoreg_db/queries/get/video.py +31 -31
  321. endoreg_db/serializers/__init__.py +9 -9
  322. endoreg_db/serializers/ai_model.py +18 -18
  323. endoreg_db/serializers/annotation.py +17 -17
  324. endoreg_db/serializers/center.py +11 -11
  325. endoreg_db/serializers/examination.py +32 -32
  326. endoreg_db/serializers/frame.py +13 -13
  327. endoreg_db/serializers/hardware.py +20 -20
  328. endoreg_db/serializers/label.py +22 -22
  329. endoreg_db/serializers/patient.py +10 -10
  330. endoreg_db/serializers/prediction.py +15 -15
  331. endoreg_db/serializers/report_file.py +7 -7
  332. endoreg_db/serializers/video.py +27 -27
  333. endoreg_db/tests.py +3 -3
  334. endoreg_db/utils/cropping.py +28 -28
  335. endoreg_db/utils/dataloader.py +92 -92
  336. endoreg_db/utils/file_operations.py +30 -30
  337. endoreg_db/utils/hashs.py +33 -33
  338. endoreg_db/utils/legacy_ocr.py +201 -201
  339. endoreg_db/utils/ocr.py +197 -197
  340. endoreg_db/utils/uuid.py +4 -4
  341. endoreg_db/utils/video_metadata.py +87 -87
  342. endoreg_db/views.py +3 -3
  343. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
  344. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
  345. endoreg_db-0.3.7.dist-info/RECORD +363 -0
  346. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
  347. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,73 +1,73 @@
1
- from django.db import models
2
-
3
- class CaseTemplateRuleValueTypeManager(models.Manager):
4
- def get_by_natural_key(self, name):
5
- return self.get(name=name)
6
-
7
- class CaseTemplateRuleValueType(models.Model):
8
- """
9
- A class representing a case template rule value type.
10
-
11
- Attributes:
12
- name (str): The name of the case template rule value type.
13
- distribution_type: One of "single_categorical", "multiple_categorical", "numeric"
14
- description (str): A description of the case template rule value type.
15
- """
16
- DISTRIBUTION_TYPES = [
17
- ("single_categorical", "single_categorical"),
18
- ("multiple_categorical", "multiple_categorical"),
19
- ("numeric", "numeric")
20
- ]
21
- objects = CaseTemplateRuleValueTypeManager()
22
-
23
- name = models.CharField(max_length=255)
24
- name_de = models.CharField(max_length=255, null=True)
25
- name_en = models.CharField(max_length=255, null=True)
26
- description = models.TextField(blank=True, null=True)
27
-
28
- distribution_type = models.CharField(max_length=255, choices=DISTRIBUTION_TYPES)
29
-
30
-
31
- def natural_key(self):
32
- return (self.name,)
33
-
34
- def __str__(self):
35
- return self.name
36
-
37
- class CaseTemplateRuleValueManager(models.Manager):
38
- def get_by_natural_key(self, name):
39
- return self.get(name=name)
40
-
41
- class CaseTemplateRuleValue(models.Model):
42
- """
43
- A class representing a case template rule value.
44
-
45
- Attributes:
46
- value (str): The value of the case template rule value.
47
- case_template_rule (CaseTemplateRule): The case template rule of the case template rule value.
48
- case_template (CaseTemplate): The case template of the case template rule value.
49
- """
50
- objects = CaseTemplateRuleValueManager()
51
-
52
- name = models.CharField(max_length=255)
53
- description = models.TextField(blank=True, null=True)
54
-
55
- fk_value = models.CharField(max_length=255, null=True, blank=True)
56
- numeric_value = models.FloatField(null=True, blank=True)
57
- text_value = models.CharField(max_length=255, null=True, blank=True)
58
-
59
- def natural_key(self):
60
- return (self.name,)
61
-
62
- def __str__(self):
63
- return self.name
64
-
65
- def get_value(self):
66
- if self.fk_value:
67
- return self.fk_value
68
- elif self.numeric_value:
69
- return self.numeric_value
70
- elif self.text_value:
71
- return self.text_value
72
- else:
73
- return None
1
+ from django.db import models
2
+
3
+ class CaseTemplateRuleValueTypeManager(models.Manager):
4
+ def get_by_natural_key(self, name):
5
+ return self.get(name=name)
6
+
7
+ class CaseTemplateRuleValueType(models.Model):
8
+ """
9
+ A class representing a case template rule value type.
10
+
11
+ Attributes:
12
+ name (str): The name of the case template rule value type.
13
+ distribution_type: One of "single_categorical", "multiple_categorical", "numeric"
14
+ description (str): A description of the case template rule value type.
15
+ """
16
+ DISTRIBUTION_TYPES = [
17
+ ("single_categorical", "single_categorical"),
18
+ ("multiple_categorical", "multiple_categorical"),
19
+ ("numeric", "numeric")
20
+ ]
21
+ objects = CaseTemplateRuleValueTypeManager()
22
+
23
+ name = models.CharField(max_length=255)
24
+ name_de = models.CharField(max_length=255, null=True)
25
+ name_en = models.CharField(max_length=255, null=True)
26
+ description = models.TextField(blank=True, null=True)
27
+
28
+ distribution_type = models.CharField(max_length=255, choices=DISTRIBUTION_TYPES)
29
+
30
+
31
+ def natural_key(self):
32
+ return (self.name,)
33
+
34
+ def __str__(self):
35
+ return self.name
36
+
37
+ class CaseTemplateRuleValueManager(models.Manager):
38
+ def get_by_natural_key(self, name):
39
+ return self.get(name=name)
40
+
41
+ class CaseTemplateRuleValue(models.Model):
42
+ """
43
+ A class representing a case template rule value.
44
+
45
+ Attributes:
46
+ value (str): The value of the case template rule value.
47
+ case_template_rule (CaseTemplateRule): The case template rule of the case template rule value.
48
+ case_template (CaseTemplate): The case template of the case template rule value.
49
+ """
50
+ objects = CaseTemplateRuleValueManager()
51
+
52
+ name = models.CharField(max_length=255)
53
+ description = models.TextField(blank=True, null=True)
54
+
55
+ fk_value = models.CharField(max_length=255, null=True, blank=True)
56
+ numeric_value = models.FloatField(null=True, blank=True)
57
+ text_value = models.CharField(max_length=255, null=True, blank=True)
58
+
59
+ def natural_key(self):
60
+ return (self.name,)
61
+
62
+ def __str__(self):
63
+ return self.name
64
+
65
+ def get_value(self):
66
+ if self.fk_value:
67
+ return self.fk_value
68
+ elif self.numeric_value:
69
+ return self.numeric_value
70
+ elif self.text_value:
71
+ return self.text_value
72
+ else:
73
+ return None
@@ -1,28 +1,28 @@
1
- from django.db import models
2
-
3
-
4
- class CaseTemplateTypeManager(models.Manager):
5
- def get_by_natural_key(self, name):
6
- return self.get(name=name)
7
-
8
- class CaseTemplateType(models.Model):
9
- """
10
- A class representing a case template type.
11
-
12
- Attributes:
13
- name (str): The name of the case template type.
14
- description (str): A description of the case template type.
15
-
16
- """
17
- name = models.CharField(max_length=255)
18
- name_de = models.CharField(max_length=255, null=True)
19
- name_en = models.CharField(max_length=255, null=True)
20
- description = models.TextField(blank=True, null=True)
21
-
22
- objects = CaseTemplateTypeManager()
23
-
24
- def natural_key(self):
25
- return (self.name,)
26
-
27
- def __str__(self):
1
+ from django.db import models
2
+
3
+
4
+ class CaseTemplateTypeManager(models.Manager):
5
+ def get_by_natural_key(self, name):
6
+ return self.get(name=name)
7
+
8
+ class CaseTemplateType(models.Model):
9
+ """
10
+ A class representing a case template type.
11
+
12
+ Attributes:
13
+ name (str): The name of the case template type.
14
+ description (str): A description of the case template type.
15
+
16
+ """
17
+ name = models.CharField(max_length=255)
18
+ name_de = models.CharField(max_length=255, null=True)
19
+ name_en = models.CharField(max_length=255, null=True)
20
+ description = models.TextField(blank=True, null=True)
21
+
22
+ objects = CaseTemplateTypeManager()
23
+
24
+ def natural_key(self):
25
+ return (self.name,)
26
+
27
+ def __str__(self):
28
28
  return self.name
@@ -1,4 +1,4 @@
1
- from .center import Center
2
- from .center_product import CenterProduct
3
- from .center_resource import CenterResource
4
- from .center_waste import CenterWaste
1
+ from .center import Center
2
+ from .center_product import CenterProduct
3
+ from .center_resource import CenterResource
4
+ from .center_waste import CenterWaste
@@ -1,25 +1,25 @@
1
- from django.db import models
2
-
3
- class CenterManager(models.Manager):
4
- def get_by_natural_key(self, name):
5
- return self.get(name=name)
6
-
7
- class Center(models.Model):
8
- objects = CenterManager()
9
-
10
- # import_id = models.IntegerField(primary_key=True)
11
- name = models.CharField(max_length=255)
12
- name_de = models.CharField(max_length=255, blank=True, null=True)
13
- name_en = models.CharField(max_length=255, blank=True, null=True)
14
-
15
- first_names = models.ManyToManyField(
16
- 'FirstName',
17
- related_name='centers',
18
- )
19
- last_names = models.ManyToManyField('LastName', related_name='centers')
20
-
21
- def natural_key(self):
22
- return (self.name,)
23
-
24
- def __str__(self):
1
+ from django.db import models
2
+
3
+ class CenterManager(models.Manager):
4
+ def get_by_natural_key(self, name):
5
+ return self.get(name=name)
6
+
7
+ class Center(models.Model):
8
+ objects = CenterManager()
9
+
10
+ # import_id = models.IntegerField(primary_key=True)
11
+ name = models.CharField(max_length=255)
12
+ name_de = models.CharField(max_length=255, blank=True, null=True)
13
+ name_en = models.CharField(max_length=255, blank=True, null=True)
14
+
15
+ first_names = models.ManyToManyField(
16
+ 'FirstName',
17
+ related_name='centers',
18
+ )
19
+ last_names = models.ManyToManyField('LastName', related_name='centers')
20
+
21
+ def natural_key(self):
22
+ return (self.name,)
23
+
24
+ def __str__(self):
25
25
  return self.name
@@ -1,34 +1,34 @@
1
- from itertools import product
2
- from django.db import models
3
-
4
- class CenterProduct(models.Model):
5
- product = models.ForeignKey("Product", on_delete=models.CASCADE)
6
- date_used = models.DateField()
7
- center = models.ForeignKey("Center", on_delete=models.CASCADE)
8
-
9
-
10
- def get_product_group(self):
11
- product = self.product
12
- product_group = product.product_group
13
-
14
- return product_group
15
-
16
- def get_reference_product(self):
17
- product_group = self.get_product_group()
18
- reference_product = product_group.reference_product
19
-
20
- return reference_product
21
-
22
- def get_product_weight(self):
23
- product = self.product
24
- weight, unit = product.get_product_weight()
25
-
26
- return weight, unit
27
-
28
- def get_package_weight(self):
29
- product = self.product
30
- weight, unit = product.get_package_weight()
31
-
32
- return weight, unit
33
-
1
+ from itertools import product
2
+ from django.db import models
3
+
4
+ class CenterProduct(models.Model):
5
+ product = models.ForeignKey("Product", on_delete=models.CASCADE)
6
+ date_used = models.DateField()
7
+ center = models.ForeignKey("Center", on_delete=models.CASCADE)
8
+
9
+
10
+ def get_product_group(self):
11
+ product = self.product
12
+ product_group = product.product_group
13
+
14
+ return product_group
15
+
16
+ def get_reference_product(self):
17
+ product_group = self.get_product_group()
18
+ reference_product = product_group.reference_product
19
+
20
+ return reference_product
21
+
22
+ def get_product_weight(self):
23
+ product = self.product
24
+ weight, unit = product.get_product_weight()
25
+
26
+ return weight, unit
27
+
28
+ def get_package_weight(self):
29
+ product = self.product
30
+ weight, unit = product.get_package_weight()
31
+
32
+ return weight, unit
33
+
34
34
 
@@ -1,19 +1,19 @@
1
- from os import name
2
- from django.db import models
3
-
4
- class CenterResource(models.Model):
5
- name = models.CharField(max_length=255, null=True)
6
- center = models.ForeignKey("Center", on_delete=models.CASCADE)
7
- name_de = models.CharField(max_length=255, null=True)
8
- name_en = models.CharField(max_length=255, null=True)
9
- quantity = models.FloatField()
10
- resource = models.ForeignKey("Resource", on_delete=models.CASCADE)
11
- transport_emission_factor = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True,
12
- related_name="center_resource_transport_emission_factor")
13
- use_emission_factor = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True,
14
- related_name="center_resource_use_emission_factor")
15
- year = models.IntegerField()
16
- unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
17
-
18
- def __str__(self):
1
+ from os import name
2
+ from django.db import models
3
+
4
+ class CenterResource(models.Model):
5
+ name = models.CharField(max_length=255, null=True)
6
+ center = models.ForeignKey("Center", on_delete=models.CASCADE)
7
+ name_de = models.CharField(max_length=255, null=True)
8
+ name_en = models.CharField(max_length=255, null=True)
9
+ quantity = models.FloatField()
10
+ resource = models.ForeignKey("Resource", on_delete=models.CASCADE)
11
+ transport_emission_factor = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True,
12
+ related_name="center_resource_transport_emission_factor")
13
+ use_emission_factor = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True,
14
+ related_name="center_resource_use_emission_factor")
15
+ year = models.IntegerField()
16
+ unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
17
+
18
+ def __str__(self):
19
19
  return self.center.name + " - " + self.resource.name + " (" + str(self.year) + ")"
@@ -1,11 +1,11 @@
1
- from django.db import models
2
-
3
- class CenterWaste(models.Model):
4
- center = models.ForeignKey("Center", on_delete=models.CASCADE)
5
- year = models.IntegerField()
6
- waste = models.ForeignKey("Waste", on_delete=models.CASCADE)
7
- quantity = models.FloatField()
8
- unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
9
- emission_factor = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True)
10
-
1
+ from django.db import models
2
+
3
+ class CenterWaste(models.Model):
4
+ center = models.ForeignKey("Center", on_delete=models.CASCADE)
5
+ year = models.IntegerField()
6
+ waste = models.ForeignKey("Waste", on_delete=models.CASCADE)
7
+ quantity = models.FloatField()
8
+ unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
9
+ emission_factor = models.ForeignKey("EmissionFactor", on_delete=models.SET_NULL, null=True)
10
+
11
11
 
@@ -1,6 +1,6 @@
1
- from .frame import Frame, LegacyFrame
2
- from .report_file import ReportFile
3
- from .video import Video, LegacyVideo, VideoImportMeta
4
- from .video_segment import LegacyLabelVideoSegment, LabelVideoSegment
5
- from .metadata import *
1
+ from .frame import Frame, LegacyFrame
2
+ from .report_file import ReportFile
3
+ from .video import Video, LegacyVideo, VideoImportMeta
4
+ from .video_segment import LegacyLabelVideoSegment, LabelVideoSegment
5
+ from .metadata import *
6
6
  from .import_classes import *
@@ -1,2 +1,2 @@
1
- from .abstract_frame import AbstractFrame
2
- from .abstract_video import AbstractVideo
1
+ from .abstract_frame import AbstractFrame
2
+ from .abstract_video import AbstractVideo
@@ -1,51 +1,51 @@
1
- from endoreg_db.models.annotation.image_classification import ImageClassificationAnnotation
2
- from endoreg_db.models.label.label import Label
3
-
4
- from django.db import models
5
-
6
-
7
- class AbstractFrame(models.Model):
8
- video = None # Placeholder for the video field, to be defined in derived classes
9
- frame_number = models.IntegerField()
10
- # Add any other fields you need to store frame-related information
11
- image = models.ImageField(upload_to="frames") # Or some other field type, depending on how you're storing the frame
12
- suffix = models.CharField(max_length=255)
13
- # ImageClassificationAnnotation has a foreign key to this model (related name: image_classification_annotations)
14
-
15
- class Meta:
16
- # Ensure that for each video, the frame_number is unique
17
- abstract = True
18
- unique_together = ('video', 'frame_number')
19
- # Optimize for retrieval in frame_number order
20
- indexes = [models.Index(fields=['video', 'frame_number'])]
21
-
22
-
23
- def __str__(self):
24
- return self.video.file.path + " - " + str(self.frame_number)
25
-
26
- def get_frame_model(self):
27
- assert 1 == 2, "This method should be overridden in derived classes"
28
-
29
- def get_classification_annotations(self):
30
- """
31
- Get all image classification annotations for this frame.
32
- """
33
- return ImageClassificationAnnotation.objects.filter(frame=self)
34
-
35
- def get_classification_annotations_by_label(self, label:Label):
36
- """
37
- Get all image classification annotations for this frame with the given label.
38
- """
39
- return ImageClassificationAnnotation.objects.filter(frame=self, label=label)
40
-
41
- def get_classification_annotations_by_value(self, value:bool):
42
- """
43
- Get all image classification annotations for this frame with the given value.
44
- """
45
- return ImageClassificationAnnotation.objects.filter(frame=self, value=value)
46
-
47
- def get_classification_annotations_by_label_and_value(self, label:Label, value:bool):
48
- """
49
- Get all image classification annotations for this frame with the given label and value.
50
- """
1
+ from endoreg_db.models.annotation.image_classification import ImageClassificationAnnotation
2
+ from endoreg_db.models.label.label import Label
3
+
4
+ from django.db import models
5
+
6
+
7
+ class AbstractFrame(models.Model):
8
+ video = None # Placeholder for the video field, to be defined in derived classes
9
+ frame_number = models.IntegerField()
10
+ # Add any other fields you need to store frame-related information
11
+ image = models.ImageField(upload_to="frames") # Or some other field type, depending on how you're storing the frame
12
+ suffix = models.CharField(max_length=255)
13
+ # ImageClassificationAnnotation has a foreign key to this model (related name: image_classification_annotations)
14
+
15
+ class Meta:
16
+ # Ensure that for each video, the frame_number is unique
17
+ abstract = True
18
+ unique_together = ('video', 'frame_number')
19
+ # Optimize for retrieval in frame_number order
20
+ indexes = [models.Index(fields=['video', 'frame_number'])]
21
+
22
+
23
+ def __str__(self):
24
+ return self.video.file.path + " - " + str(self.frame_number)
25
+
26
+ def get_frame_model(self):
27
+ assert 1 == 2, "This method should be overridden in derived classes"
28
+
29
+ def get_classification_annotations(self):
30
+ """
31
+ Get all image classification annotations for this frame.
32
+ """
33
+ return ImageClassificationAnnotation.objects.filter(frame=self)
34
+
35
+ def get_classification_annotations_by_label(self, label:Label):
36
+ """
37
+ Get all image classification annotations for this frame with the given label.
38
+ """
39
+ return ImageClassificationAnnotation.objects.filter(frame=self, label=label)
40
+
41
+ def get_classification_annotations_by_value(self, value:bool):
42
+ """
43
+ Get all image classification annotations for this frame with the given value.
44
+ """
45
+ return ImageClassificationAnnotation.objects.filter(frame=self, value=value)
46
+
47
+ def get_classification_annotations_by_label_and_value(self, label:Label, value:bool):
48
+ """
49
+ Get all image classification annotations for this frame with the given label and value.
50
+ """
51
51
  return ImageClassificationAnnotation.objects.filter(frame=self, label=label, value=value)