endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/network_device/data.yaml +17 -0
  70. endoreg_db/data/network_device_type/data.yaml +8 -0
  71. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  72. endoreg_db/data/pdf_type/data.yaml +28 -28
  73. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  74. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  75. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  76. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  77. endoreg_db/data/profession/data.yaml +70 -70
  78. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  79. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  80. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  81. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  82. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  83. endoreg_db/data/unit/concentration.yaml +92 -92
  84. endoreg_db/data/unit/data.yaml +17 -17
  85. endoreg_db/data/unit/length.yaml +30 -30
  86. endoreg_db/data/unit/misc.yaml +19 -19
  87. endoreg_db/data/unit/rate.yaml +5 -5
  88. endoreg_db/data/unit/time.yaml +12 -12
  89. endoreg_db/data/unit/volume.yaml +35 -35
  90. endoreg_db/data/unit/weight.yaml +37 -37
  91. endoreg_db/data/waste/data.yaml +11 -11
  92. endoreg_db/forms/__init__.py +2 -2
  93. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  94. endoreg_db/forms/settings/__init__.py +8 -8
  95. endoreg_db/forms/unit.py +5 -5
  96. endoreg_db/management/commands/_load_model_template.py +40 -40
  97. endoreg_db/management/commands/delete_all.py +18 -18
  98. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  99. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  100. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  101. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  102. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  103. endoreg_db/management/commands/import_legacy_images.py +94 -94
  104. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  105. endoreg_db/management/commands/load_active_model_data.py +44 -44
  106. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  107. endoreg_db/management/commands/load_base_db_data.py +132 -128
  108. endoreg_db/management/commands/load_center_data.py +42 -42
  109. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  110. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  111. endoreg_db/management/commands/load_disease_data.py +39 -39
  112. endoreg_db/management/commands/load_distribution_data.py +65 -65
  113. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  114. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  115. endoreg_db/management/commands/load_event_data.py +40 -40
  116. endoreg_db/management/commands/load_examination_data.py +74 -74
  117. endoreg_db/management/commands/load_g_play_data.py +112 -112
  118. endoreg_db/management/commands/load_gender_data.py +43 -43
  119. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  120. endoreg_db/management/commands/load_information_source.py +44 -44
  121. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  122. endoreg_db/management/commands/load_label_data.py +66 -66
  123. endoreg_db/management/commands/load_medication_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  125. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  126. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  128. endoreg_db/management/commands/load_network_data.py +49 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  203. endoreg_db/models/__init__.py +75 -74
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +5 -5
  213. endoreg_db/models/case_template/case_template.py +81 -81
  214. endoreg_db/models/case_template/case_template_rule.py +276 -276
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  216. endoreg_db/models/case_template/case_template_type.py +27 -27
  217. endoreg_db/models/center/__init__.py +4 -4
  218. endoreg_db/models/center/center.py +24 -24
  219. endoreg_db/models/center/center_product.py +33 -33
  220. endoreg_db/models/center/center_resource.py +18 -18
  221. endoreg_db/models/center/center_waste.py +10 -10
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +55 -55
  243. endoreg_db/models/emission/emission_factor.py +19 -19
  244. endoreg_db/models/event.py +21 -21
  245. endoreg_db/models/examination/__init__.py +3 -3
  246. endoreg_db/models/examination/examination.py +26 -26
  247. endoreg_db/models/examination/examination_time.py +27 -27
  248. endoreg_db/models/examination/examination_time_type.py +24 -24
  249. endoreg_db/models/examination/examination_type.py +18 -18
  250. endoreg_db/models/hardware/__init__.py +1 -1
  251. endoreg_db/models/hardware/endoscope.py +44 -44
  252. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  253. endoreg_db/models/information_source.py +29 -29
  254. endoreg_db/models/label/label.py +84 -84
  255. endoreg_db/models/laboratory/lab_value.py +102 -102
  256. endoreg_db/models/legacy_data/__init__.py +3 -3
  257. endoreg_db/models/legacy_data/image.py +34 -34
  258. endoreg_db/models/medication/medication.py +148 -148
  259. endoreg_db/models/network/__init__.py +2 -0
  260. endoreg_db/models/network/network_device.py +27 -0
  261. endoreg_db/models/network/network_device_type.py +23 -0
  262. endoreg_db/models/other/__init__.py +4 -4
  263. endoreg_db/models/other/distribution.py +215 -215
  264. endoreg_db/models/other/material.py +16 -16
  265. endoreg_db/models/other/resource.py +17 -17
  266. endoreg_db/models/other/transport_route.py +20 -20
  267. endoreg_db/models/other/waste.py +20 -20
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +6 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -22
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +7 -7
  278. endoreg_db/models/persons/patient/case/case.py +30 -30
  279. endoreg_db/models/persons/patient/patient.py +216 -216
  280. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  281. endoreg_db/models/persons/patient/patient_event.py +22 -22
  282. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  283. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  284. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  285. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  286. endoreg_db/models/persons/person.py +31 -31
  287. endoreg_db/models/persons/portal_user_information.py +27 -27
  288. endoreg_db/models/prediction/__init__.py +1 -1
  289. endoreg_db/models/prediction/image_classification.py +37 -37
  290. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  291. endoreg_db/models/product/__init__.py +4 -4
  292. endoreg_db/models/product/product.py +97 -97
  293. endoreg_db/models/product/product_group.py +19 -19
  294. endoreg_db/models/product/product_material.py +24 -24
  295. endoreg_db/models/product/product_weight.py +26 -26
  296. endoreg_db/models/product/reference_product.py +99 -99
  297. endoreg_db/models/questionnaires/__init__.py +114 -114
  298. endoreg_db/models/quiz/__init__.py +1 -1
  299. endoreg_db/models/quiz/quiz_answer.py +41 -41
  300. endoreg_db/models/quiz/quiz_question.py +54 -54
  301. endoreg_db/models/report_reader/__init__.py +1 -1
  302. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  303. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  304. endoreg_db/models/rules/__init__.py +4 -4
  305. endoreg_db/models/rules/rule.py +23 -23
  306. endoreg_db/models/rules/rule_applicator.py +224 -224
  307. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  308. endoreg_db/models/rules/rule_type.py +21 -21
  309. endoreg_db/models/rules/ruleset.py +19 -19
  310. endoreg_db/models/unit.py +21 -21
  311. endoreg_db/queries/__init__.py +4 -4
  312. endoreg_db/queries/annotations/__init__.py +2 -2
  313. endoreg_db/queries/annotations/legacy.py +159 -159
  314. endoreg_db/queries/get/__init__.py +5 -5
  315. endoreg_db/queries/get/center.py +42 -42
  316. endoreg_db/queries/get/model.py +13 -13
  317. endoreg_db/queries/get/patient.py +14 -14
  318. endoreg_db/queries/get/patient_examination.py +20 -20
  319. endoreg_db/queries/get/report_file.py +33 -33
  320. endoreg_db/queries/get/video.py +31 -31
  321. endoreg_db/serializers/__init__.py +9 -9
  322. endoreg_db/serializers/ai_model.py +18 -18
  323. endoreg_db/serializers/annotation.py +17 -17
  324. endoreg_db/serializers/center.py +11 -11
  325. endoreg_db/serializers/examination.py +32 -32
  326. endoreg_db/serializers/frame.py +13 -13
  327. endoreg_db/serializers/hardware.py +20 -20
  328. endoreg_db/serializers/label.py +22 -22
  329. endoreg_db/serializers/patient.py +10 -10
  330. endoreg_db/serializers/prediction.py +15 -15
  331. endoreg_db/serializers/report_file.py +7 -7
  332. endoreg_db/serializers/video.py +27 -27
  333. endoreg_db/tests.py +3 -3
  334. endoreg_db/utils/cropping.py +28 -28
  335. endoreg_db/utils/dataloader.py +92 -92
  336. endoreg_db/utils/file_operations.py +30 -30
  337. endoreg_db/utils/hashs.py +33 -33
  338. endoreg_db/utils/legacy_ocr.py +201 -201
  339. endoreg_db/utils/ocr.py +197 -197
  340. endoreg_db/utils/uuid.py +4 -4
  341. endoreg_db/utils/video_metadata.py +87 -87
  342. endoreg_db/views.py +3 -3
  343. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
  344. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
  345. endoreg_db-0.3.7.dist-info/RECORD +363 -0
  346. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
  347. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,7 +1,7 @@
1
- - model: endoreg_db.single_categorical_value_distribution
2
- fields:
3
- name: "gender_random"
4
- categories: {
5
- "male": 0.5,
6
- "female": 0.5
1
+ - model: endoreg_db.single_categorical_value_distribution
2
+ fields:
3
+ name: "gender_random"
4
+ categories: {
5
+ "male": 0.5,
6
+ "female": 0.5
7
7
  }
@@ -1,132 +1,132 @@
1
- - fields:
2
- name: material_emission_cardboard
3
- unit: kilogram
4
- value: 0.828
5
- model: EmissionFactor
6
- - fields:
7
- name: material_emission_foil
8
- unit: kilogram
9
- value: 2.574
10
- model: EmissionFactor
11
- - fields:
12
- name: material_emission_gold
13
- unit: kilogram
14
- value: 4.018
15
- model: EmissionFactor
16
- - fields:
17
- name: material_emission_metal
18
- unit: kilogram
19
- value: 4.018
20
- model: EmissionFactor
21
- - fields:
22
- name: material_emission_nickel
23
- unit: kilogram
24
- value: 4.018
25
- model: EmissionFactor
26
- - fields:
27
- name: material_emission_paper
28
- unit: kilogram
29
- value: 0.919
30
- model: EmissionFactor
31
- - fields:
32
- name: material_emission_paper_coated
33
- unit: kilogram
34
- value: 2.0175
35
- model: EmissionFactor
36
- - fields:
37
- name: material_emission_plastic
38
- unit: kilogram
39
- value: 3.116
40
- model: EmissionFactor
41
- - fields:
42
- name: material_emission_plastic_coated
43
- unit: kilogram
44
- value: 3.116
45
- model: EmissionFactor
46
- - fields:
47
- name: material_emission_silicone
48
- unit: kilogram
49
- value: 2.0
50
- model: EmissionFactor
51
- - fields:
52
- name: material_emission_steel
53
- unit: kilogram
54
- value: 4.018
55
- model: EmissionFactor
56
- - fields:
57
- name: material_emission_tantal
58
- unit: kilogram
59
- value: 4.018
60
- model: EmissionFactor
61
- - fields:
62
- name: material_emission_textile
63
- unit: kilogram
64
- value: 2.0
65
- model: EmissionFactor
66
- - fields:
67
- name: material_emission_titan
68
- unit: kilogram
69
- value: 4.018
70
- model: EmissionFactor
71
- - fields:
72
- name: use_resource_emission_ukw_gas
73
- unit: liter
74
- value: 2.01574
75
- model: EmissionFactor
76
- - fields:
77
- name: use_resource_emission_ukw_oil
78
- unit: cubic_meter
79
- value: 3.17522
80
- model: EmissionFactor
81
- - fields:
82
- name: use_resource_emission_ukw_electricity_extern
83
- unit: kilowatt-hours
84
- value: 0.0
85
- model: EmissionFactor
86
- - fields:
87
- name: use_resource_emission_ukw_electricity_selfmade
88
- unit: kilowatt-hours
89
- value: 0.0
90
- model: EmissionFactor
91
- - fields:
92
- name: transport_resource_emission_ukw_gas
93
- unit: liter
94
- value: 0.3434
95
- model: EmissionFactor
96
- - fields:
97
- name: transport_resource_emission_ukw_oil
98
- unit: cubic_meter
99
- value: 0.69723
100
- model: EmissionFactor
101
- - fields:
102
- name: transport_resource_emission_ukw_electricity_extern
103
- unit: kilowatt-hours
104
- value: 0.05048
105
- model: EmissionFactor
106
- - fields:
107
- name: transport_resource_emission_ukw_electricity_selfmade
108
- unit: kilowatt-hours
109
- value: 0.0
110
- model: EmissionFactor
111
-
112
- - fields:
113
- name: transport_product_emission_generic_europe
114
- unit: "kilogram"
115
- value: 0.13213
116
- model: EmissionFactor
117
- - fields:
118
- name: transport_product_emission_generic_overseas
119
- unit: "kilogram"
120
- value: 1.308373
121
- model: EmissionFactor
122
- - fields:
123
- name: waste_emission_medical
124
- unit: "kilogram"
125
- value: 0.0212801937984496
126
- model: EmissionFactor
127
-
128
- - fields:
129
- name: waste_emission_general
130
- unit: "kilogram"
131
- value: 0.0212801937984496
132
- model: EmissionFactor
1
+ - fields:
2
+ name: material_emission_cardboard
3
+ unit: kilogram
4
+ value: 0.828
5
+ model: EmissionFactor
6
+ - fields:
7
+ name: material_emission_foil
8
+ unit: kilogram
9
+ value: 2.574
10
+ model: EmissionFactor
11
+ - fields:
12
+ name: material_emission_gold
13
+ unit: kilogram
14
+ value: 4.018
15
+ model: EmissionFactor
16
+ - fields:
17
+ name: material_emission_metal
18
+ unit: kilogram
19
+ value: 4.018
20
+ model: EmissionFactor
21
+ - fields:
22
+ name: material_emission_nickel
23
+ unit: kilogram
24
+ value: 4.018
25
+ model: EmissionFactor
26
+ - fields:
27
+ name: material_emission_paper
28
+ unit: kilogram
29
+ value: 0.919
30
+ model: EmissionFactor
31
+ - fields:
32
+ name: material_emission_paper_coated
33
+ unit: kilogram
34
+ value: 2.0175
35
+ model: EmissionFactor
36
+ - fields:
37
+ name: material_emission_plastic
38
+ unit: kilogram
39
+ value: 3.116
40
+ model: EmissionFactor
41
+ - fields:
42
+ name: material_emission_plastic_coated
43
+ unit: kilogram
44
+ value: 3.116
45
+ model: EmissionFactor
46
+ - fields:
47
+ name: material_emission_silicone
48
+ unit: kilogram
49
+ value: 2.0
50
+ model: EmissionFactor
51
+ - fields:
52
+ name: material_emission_steel
53
+ unit: kilogram
54
+ value: 4.018
55
+ model: EmissionFactor
56
+ - fields:
57
+ name: material_emission_tantal
58
+ unit: kilogram
59
+ value: 4.018
60
+ model: EmissionFactor
61
+ - fields:
62
+ name: material_emission_textile
63
+ unit: kilogram
64
+ value: 2.0
65
+ model: EmissionFactor
66
+ - fields:
67
+ name: material_emission_titan
68
+ unit: kilogram
69
+ value: 4.018
70
+ model: EmissionFactor
71
+ - fields:
72
+ name: use_resource_emission_ukw_gas
73
+ unit: liter
74
+ value: 2.01574
75
+ model: EmissionFactor
76
+ - fields:
77
+ name: use_resource_emission_ukw_oil
78
+ unit: cubic_meter
79
+ value: 3.17522
80
+ model: EmissionFactor
81
+ - fields:
82
+ name: use_resource_emission_ukw_electricity_extern
83
+ unit: kilowatt-hours
84
+ value: 0.0
85
+ model: EmissionFactor
86
+ - fields:
87
+ name: use_resource_emission_ukw_electricity_selfmade
88
+ unit: kilowatt-hours
89
+ value: 0.0
90
+ model: EmissionFactor
91
+ - fields:
92
+ name: transport_resource_emission_ukw_gas
93
+ unit: liter
94
+ value: 0.3434
95
+ model: EmissionFactor
96
+ - fields:
97
+ name: transport_resource_emission_ukw_oil
98
+ unit: cubic_meter
99
+ value: 0.69723
100
+ model: EmissionFactor
101
+ - fields:
102
+ name: transport_resource_emission_ukw_electricity_extern
103
+ unit: kilowatt-hours
104
+ value: 0.05048
105
+ model: EmissionFactor
106
+ - fields:
107
+ name: transport_resource_emission_ukw_electricity_selfmade
108
+ unit: kilowatt-hours
109
+ value: 0.0
110
+ model: EmissionFactor
111
+
112
+ - fields:
113
+ name: transport_product_emission_generic_europe
114
+ unit: "kilogram"
115
+ value: 0.13213
116
+ model: EmissionFactor
117
+ - fields:
118
+ name: transport_product_emission_generic_overseas
119
+ unit: "kilogram"
120
+ value: 1.308373
121
+ model: EmissionFactor
122
+ - fields:
123
+ name: waste_emission_medical
124
+ unit: "kilogram"
125
+ value: 0.0212801937984496
126
+ model: EmissionFactor
127
+
128
+ - fields:
129
+ name: waste_emission_general
130
+ unit: "kilogram"
131
+ value: 0.0212801937984496
132
+ model: EmissionFactor
@@ -1,11 +1,11 @@
1
- - model: endoreg_db.endoscope_type
2
- fields:
3
- name: "gastroscope"
4
- name_de: "Gastroskop"
5
- name_en: "Gastroscope"
6
-
7
- - model: endoreg_db.endoscope_type
8
- fields:
9
- name: "colonoscope"
10
- name_de: "Koloskop"
1
+ - model: endoreg_db.endoscope_type
2
+ fields:
3
+ name: "gastroscope"
4
+ name_de: "Gastroskop"
5
+ name_en: "Gastroscope"
6
+
7
+ - model: endoreg_db.endoscope_type
8
+ fields:
9
+ name: "colonoscope"
10
+ name_de: "Koloskop"
11
11
  name_en: "Colonoscope"
@@ -1,45 +1,45 @@
1
- - model: endoreg_db.endoscopy_processor
2
- fields:
3
- name: "olympus_cv_1500"
4
- image_width: 1920
5
- image_height: 1080
6
-
7
- endoscope_image_x: 550
8
- endoscope_image_y: 0
9
- endoscope_image_width: 1350
10
- endoscope_image_height: 1080
11
-
12
- examination_date_x: 0
13
- examination_date_y: 0
14
- examination_date_width: 390
15
- examination_date_height: 40
16
-
17
- examination_time_x: 240
18
- examination_time_y: 7
19
- examination_time_width: 115
20
- examination_time_height: 35
21
-
22
- patient_first_name_x: 80
23
- patient_first_name_y: 110
24
- patient_first_name_width: 440
25
- patient_first_name_height: 33
26
-
27
- patient_last_name_x: 70
28
- patient_last_name_y: 83
29
- patient_last_name_width: 450
30
- patient_last_name_height: 27
31
-
32
- patient_dob_x: 70
33
- patient_dob_y: 180
34
- patient_dob_width: 160
35
- patient_dob_height: 50
36
-
37
- endoscope_type_x: 70
38
- endoscope_type_y: 630
39
- endoscope_type_width: 280
40
- endoscope_type_height: 35
41
-
42
- endoscope_sn_x: 70
43
- endoscope_sn_y: 670
44
- endoscope_sn_width: 280
45
- endoscope_sn_height: 35
1
+ - model: endoreg_db.endoscopy_processor
2
+ fields:
3
+ name: "olympus_cv_1500"
4
+ image_width: 1920
5
+ image_height: 1080
6
+
7
+ endoscope_image_x: 550
8
+ endoscope_image_y: 0
9
+ endoscope_image_width: 1350
10
+ endoscope_image_height: 1080
11
+
12
+ examination_date_x: 0
13
+ examination_date_y: 0
14
+ examination_date_width: 390
15
+ examination_date_height: 40
16
+
17
+ examination_time_x: 240
18
+ examination_time_y: 7
19
+ examination_time_width: 115
20
+ examination_time_height: 35
21
+
22
+ patient_first_name_x: 80
23
+ patient_first_name_y: 110
24
+ patient_first_name_width: 440
25
+ patient_first_name_height: 33
26
+
27
+ patient_last_name_x: 70
28
+ patient_last_name_y: 83
29
+ patient_last_name_width: 450
30
+ patient_last_name_height: 27
31
+
32
+ patient_dob_x: 70
33
+ patient_dob_y: 180
34
+ patient_dob_width: 160
35
+ patient_dob_height: 50
36
+
37
+ endoscope_type_x: 70
38
+ endoscope_type_y: 630
39
+ endoscope_type_width: 280
40
+ endoscope_type_height: 35
41
+
42
+ endoscope_sn_x: 70
43
+ endoscope_sn_y: 670
44
+ endoscope_sn_width: 280
45
+ endoscope_sn_height: 35
@@ -1,28 +1,28 @@
1
- - model: endoreg_db.event
2
- fields:
3
- name: "coro_des_implantation"
4
- name_de: "Koronarstent-Implantation (DES)"
5
- name_en: "Coronary Stent Implantation (DES)"
6
- - model: endoreg_db.event
7
- fields:
8
- name: "coro_bms_implantation"
9
- name_de: "Koronarstent-Implantation (BMS)"
10
- name_en: "Coronary Stent Implantation (BMS)"
11
- - model: endoreg_db.event
12
- fields:
13
- name: "complication_coro_stent_thrombosis"
14
- name_de: "Komplikation: Koronar Stent Thrombose"
15
- name_en: "Complication: Coronary Stent Thrombosis"
16
-
17
- - model: endoreg_db.event
18
- fields:
19
- name: "pulmonary_embolism"
20
- name_de: "Lungenembolie"
21
- name_en: "Pulmonary Embolism"
22
-
23
- - model: endoreg_db.event
24
- fields:
25
- name: "deep_vein_thrombosis"
26
- name_de: "Tiefe Beinvenenthrombose"
27
- name_en: "Deep Vein Thrombosis"
1
+ - model: endoreg_db.event
2
+ fields:
3
+ name: "coro_des_implantation"
4
+ name_de: "Koronarstent-Implantation (DES)"
5
+ name_en: "Coronary Stent Implantation (DES)"
6
+ - model: endoreg_db.event
7
+ fields:
8
+ name: "coro_bms_implantation"
9
+ name_de: "Koronarstent-Implantation (BMS)"
10
+ name_en: "Coronary Stent Implantation (BMS)"
11
+ - model: endoreg_db.event
12
+ fields:
13
+ name: "complication_coro_stent_thrombosis"
14
+ name_de: "Komplikation: Koronar Stent Thrombose"
15
+ name_en: "Complication: Coronary Stent Thrombosis"
16
+
17
+ - model: endoreg_db.event
18
+ fields:
19
+ name: "pulmonary_embolism"
20
+ name_de: "Lungenembolie"
21
+ name_en: "Pulmonary Embolism"
22
+
23
+ - model: endoreg_db.event
24
+ fields:
25
+ name: "deep_vein_thrombosis"
26
+ name_de: "Tiefe Beinvenenthrombose"
27
+ name_en: "Deep Vein Thrombosis"
28
28
 
@@ -1,14 +1,14 @@
1
-
2
- - model: endoreg_db.event
3
- fields:
4
- name: "stroke"
5
- name_de: "Schlaganfall"
6
- name_en: "Stroke"
7
-
8
- - model: endoreg_db.event
9
- fields:
10
- name: "transient_ischemic_attack"
11
- name_de: "Transitorische ischämische Attacke"
12
- name_en: "Transient Ischemic Attack"
13
-
1
+
2
+ - model: endoreg_db.event
3
+ fields:
4
+ name: "stroke"
5
+ name_de: "Schlaganfall"
6
+ name_en: "Stroke"
7
+
8
+ - model: endoreg_db.event
9
+ fields:
10
+ name: "transient_ischemic_attack"
11
+ name_de: "Transitorische ischämische Attacke"
12
+ name_en: "Transient Ischemic Attack"
13
+
14
14
 
@@ -1,13 +1,13 @@
1
- - model: endoreg_db.event
2
- fields:
3
- name: "hip_replacement_surgery" #TODO : could match disease / indication / ...?
4
- name_de: "Hüft-TEP Operation"
5
- name_en: "Hip replacement surgery"
6
- description: "Hip replacement surgery"
7
-
8
- - model: endoreg_db.event
9
- fields:
10
- name: "knee_replacement_surgery"
11
- name_de: "Knie-TEP Operation"
12
- name_en: "Knee replacement surgery"
1
+ - model: endoreg_db.event
2
+ fields:
3
+ name: "hip_replacement_surgery" #TODO : could match disease / indication / ...?
4
+ name_de: "Hüft-TEP Operation"
5
+ name_en: "Hip replacement surgery"
6
+ description: "Hip replacement surgery"
7
+
8
+ - model: endoreg_db.event
9
+ fields:
10
+ name: "knee_replacement_surgery"
11
+ name_de: "Knie-TEP Operation"
12
+ name_en: "Knee replacement surgery"
13
13
  description: "Knee replacement surgery"
@@ -1,20 +1,20 @@
1
- - model: endoreg_db.event
2
- fields:
3
- name: "deep_vein_thrombosis"
4
- name_de: "Tiefe Beinvenenthrombose"
5
- name_en: "Deep Vein Thrombosis"
6
- description: "Deep Vein Thrombosis"
7
-
8
- - model: endoreg_db.event
9
- fields:
10
- name: "pulmonary_embolism"
11
- name_de: "Lungenembolie"
12
- name_en: "Pulmonary Embolism"
13
- description: "Pulmonary Embolism"
14
-
15
- - model: endoreg_db.event
16
- fields:
17
- name: "recurrent_thrombembolism"
18
- name_de: "Rezidivierende Thrombembolien"
19
- name_en: "Recurrent Thrombembolism"
1
+ - model: endoreg_db.event
2
+ fields:
3
+ name: "deep_vein_thrombosis"
4
+ name_de: "Tiefe Beinvenenthrombose"
5
+ name_en: "Deep Vein Thrombosis"
6
+ description: "Deep Vein Thrombosis"
7
+
8
+ - model: endoreg_db.event
9
+ fields:
10
+ name: "pulmonary_embolism"
11
+ name_de: "Lungenembolie"
12
+ name_en: "Pulmonary Embolism"
13
+ description: "Pulmonary Embolism"
14
+
15
+ - model: endoreg_db.event
16
+ fields:
17
+ name: "recurrent_thrombembolism"
18
+ name_de: "Rezidivierende Thrombembolien"
19
+ name_en: "Recurrent Thrombembolism"
20
20
  description: "Recurrent Thrombembolism"
@@ -1,66 +1,66 @@
1
- - model: report.Examination
2
- fields:
3
- name: "colonoscopy"
4
- name_de: "Koloskopie"
5
- name_en: "Colonoscopy"
6
- examination_types: [
7
- "endoscopy"
8
- ]
9
-
10
- - model: report.Examination
11
- fields:
12
- name: "gastroscopy"
13
- name_de: "Gastroskopie"
14
- name_en: "Gastroscopy"
15
- examination_types: [
16
- "endoscopy"
17
- ]
18
-
19
- # endosonography_upper_gi
20
- - model: report.Examination
21
- fields:
22
- name: "endosonography_upper_gi"
23
- name_de: "Endosonographie oberer GI-Trakt"
24
- name_en: "Endosonography Upper GI Tract"
25
- examination_types: [
26
- "endoscopy"
27
- ]
28
-
29
- - model: report.Examination
30
- fields:
31
- name: "endosonography_lower_gi"
32
- name_de: "Endosonographie unterer GI-Trakt"
33
- name_en: "Endosonography Lower GI Tract"
34
- examination_types: [
35
- "endoscopy"
36
- ]
37
-
38
- # ERCP
39
- - model: report.Examination
40
- fields:
41
- name: "ercp"
42
- name_de: "ERCP"
43
- name_en: "ERCP"
44
- examination_types: [
45
- "endoscopy"
46
- ]
47
-
48
- # small bowel endoscopy
49
- - model: report.Examination
50
- fields:
51
- name: "small_bowel_endoscopy"
52
- name_de: "Dünndarmendoskopie"
53
- name_en: "Small Bowel Endoscopy"
54
- examination_types: [
55
- "endoscopy"
56
- ]
57
-
58
- # capsule endoscopy
59
- - model: report.Examination
60
- fields:
61
- name: "capsule_endoscopy"
62
- name_de: "Kapselendoskopie"
63
- name_en: "Capsule Endoscopy"
64
- examination_types: [
65
- "endoscopy"
1
+ - model: report.Examination
2
+ fields:
3
+ name: "colonoscopy"
4
+ name_de: "Koloskopie"
5
+ name_en: "Colonoscopy"
6
+ examination_types: [
7
+ "endoscopy"
8
+ ]
9
+
10
+ - model: report.Examination
11
+ fields:
12
+ name: "gastroscopy"
13
+ name_de: "Gastroskopie"
14
+ name_en: "Gastroscopy"
15
+ examination_types: [
16
+ "endoscopy"
17
+ ]
18
+
19
+ # endosonography_upper_gi
20
+ - model: report.Examination
21
+ fields:
22
+ name: "endosonography_upper_gi"
23
+ name_de: "Endosonographie oberer GI-Trakt"
24
+ name_en: "Endosonography Upper GI Tract"
25
+ examination_types: [
26
+ "endoscopy"
27
+ ]
28
+
29
+ - model: report.Examination
30
+ fields:
31
+ name: "endosonography_lower_gi"
32
+ name_de: "Endosonographie unterer GI-Trakt"
33
+ name_en: "Endosonography Lower GI Tract"
34
+ examination_types: [
35
+ "endoscopy"
36
+ ]
37
+
38
+ # ERCP
39
+ - model: report.Examination
40
+ fields:
41
+ name: "ercp"
42
+ name_de: "ERCP"
43
+ name_en: "ERCP"
44
+ examination_types: [
45
+ "endoscopy"
46
+ ]
47
+
48
+ # small bowel endoscopy
49
+ - model: report.Examination
50
+ fields:
51
+ name: "small_bowel_endoscopy"
52
+ name_de: "Dünndarmendoskopie"
53
+ name_en: "Small Bowel Endoscopy"
54
+ examination_types: [
55
+ "endoscopy"
56
+ ]
57
+
58
+ # capsule endoscopy
59
+ - model: report.Examination
60
+ fields:
61
+ name: "capsule_endoscopy"
62
+ name_de: "Kapselendoskopie"
63
+ name_en: "Capsule Endoscopy"
64
+ examination_types: [
65
+ "endoscopy"
66
66
  ]