endoreg-db 0.3.6__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (347) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  14. endoreg_db/data/case_template/template/base.yaml +7 -7
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  20. endoreg_db/data/center/data.yaml +59 -59
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  24. endoreg_db/data/disease/hepatology.yaml +4 -4
  25. endoreg_db/data/disease/misc.yaml +5 -5
  26. endoreg_db/data/disease/renal.yaml +4 -4
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  31. endoreg_db/data/distribution/date/patient.yaml +6 -6
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +27 -27
  37. endoreg_db/data/event/neurology.yaml +13 -13
  38. endoreg_db/data/event/surgery.yaml +12 -12
  39. endoreg_db/data/event/thrombembolism.yaml +19 -19
  40. endoreg_db/data/examination/examinations/data.yaml +65 -65
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -18
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +5 -5
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  48. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  49. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  51. endoreg_db/data/lab_value/hematology.yaml +169 -169
  52. endoreg_db/data/lab_value/hormones.yaml +53 -53
  53. endoreg_db/data/lab_value/lipids.yaml +44 -44
  54. endoreg_db/data/lab_value/misc.yaml +30 -30
  55. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  60. endoreg_db/data/medication/tah.yaml +69 -69
  61. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  62. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  63. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  64. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  65. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  66. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  67. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  68. endoreg_db/data/model_type/data.yaml +6 -6
  69. endoreg_db/data/network_device/data.yaml +17 -0
  70. endoreg_db/data/network_device_type/data.yaml +8 -0
  71. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  72. endoreg_db/data/pdf_type/data.yaml +28 -28
  73. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  74. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  75. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  76. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  77. endoreg_db/data/profession/data.yaml +70 -70
  78. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  79. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  80. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  81. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  82. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  83. endoreg_db/data/unit/concentration.yaml +92 -92
  84. endoreg_db/data/unit/data.yaml +17 -17
  85. endoreg_db/data/unit/length.yaml +30 -30
  86. endoreg_db/data/unit/misc.yaml +19 -19
  87. endoreg_db/data/unit/rate.yaml +5 -5
  88. endoreg_db/data/unit/time.yaml +12 -12
  89. endoreg_db/data/unit/volume.yaml +35 -35
  90. endoreg_db/data/unit/weight.yaml +37 -37
  91. endoreg_db/data/waste/data.yaml +11 -11
  92. endoreg_db/forms/__init__.py +2 -2
  93. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  94. endoreg_db/forms/settings/__init__.py +8 -8
  95. endoreg_db/forms/unit.py +5 -5
  96. endoreg_db/management/commands/_load_model_template.py +40 -40
  97. endoreg_db/management/commands/delete_all.py +18 -18
  98. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  99. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  100. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  101. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  102. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  103. endoreg_db/management/commands/import_legacy_images.py +94 -94
  104. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  105. endoreg_db/management/commands/load_active_model_data.py +44 -44
  106. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  107. endoreg_db/management/commands/load_base_db_data.py +132 -128
  108. endoreg_db/management/commands/load_center_data.py +42 -42
  109. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  110. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  111. endoreg_db/management/commands/load_disease_data.py +39 -39
  112. endoreg_db/management/commands/load_distribution_data.py +65 -65
  113. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  114. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  115. endoreg_db/management/commands/load_event_data.py +40 -40
  116. endoreg_db/management/commands/load_examination_data.py +74 -74
  117. endoreg_db/management/commands/load_g_play_data.py +112 -112
  118. endoreg_db/management/commands/load_gender_data.py +43 -43
  119. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  120. endoreg_db/management/commands/load_information_source.py +44 -44
  121. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  122. endoreg_db/management/commands/load_label_data.py +66 -66
  123. endoreg_db/management/commands/load_medication_data.py +40 -40
  124. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  125. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  126. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  128. endoreg_db/management/commands/load_network_data.py +49 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  203. endoreg_db/models/__init__.py +75 -74
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +5 -5
  213. endoreg_db/models/case_template/case_template.py +81 -81
  214. endoreg_db/models/case_template/case_template_rule.py +276 -276
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  216. endoreg_db/models/case_template/case_template_type.py +27 -27
  217. endoreg_db/models/center/__init__.py +4 -4
  218. endoreg_db/models/center/center.py +24 -24
  219. endoreg_db/models/center/center_product.py +33 -33
  220. endoreg_db/models/center/center_resource.py +18 -18
  221. endoreg_db/models/center/center_waste.py +10 -10
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +55 -55
  243. endoreg_db/models/emission/emission_factor.py +19 -19
  244. endoreg_db/models/event.py +21 -21
  245. endoreg_db/models/examination/__init__.py +3 -3
  246. endoreg_db/models/examination/examination.py +26 -26
  247. endoreg_db/models/examination/examination_time.py +27 -27
  248. endoreg_db/models/examination/examination_time_type.py +24 -24
  249. endoreg_db/models/examination/examination_type.py +18 -18
  250. endoreg_db/models/hardware/__init__.py +1 -1
  251. endoreg_db/models/hardware/endoscope.py +44 -44
  252. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  253. endoreg_db/models/information_source.py +29 -29
  254. endoreg_db/models/label/label.py +84 -84
  255. endoreg_db/models/laboratory/lab_value.py +102 -102
  256. endoreg_db/models/legacy_data/__init__.py +3 -3
  257. endoreg_db/models/legacy_data/image.py +34 -34
  258. endoreg_db/models/medication/medication.py +148 -148
  259. endoreg_db/models/network/__init__.py +2 -0
  260. endoreg_db/models/network/network_device.py +27 -0
  261. endoreg_db/models/network/network_device_type.py +23 -0
  262. endoreg_db/models/other/__init__.py +4 -4
  263. endoreg_db/models/other/distribution.py +215 -215
  264. endoreg_db/models/other/material.py +16 -16
  265. endoreg_db/models/other/resource.py +17 -17
  266. endoreg_db/models/other/transport_route.py +20 -20
  267. endoreg_db/models/other/waste.py +20 -20
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +6 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -22
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +7 -7
  278. endoreg_db/models/persons/patient/case/case.py +30 -30
  279. endoreg_db/models/persons/patient/patient.py +216 -216
  280. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  281. endoreg_db/models/persons/patient/patient_event.py +22 -22
  282. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  283. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  284. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  285. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  286. endoreg_db/models/persons/person.py +31 -31
  287. endoreg_db/models/persons/portal_user_information.py +27 -27
  288. endoreg_db/models/prediction/__init__.py +1 -1
  289. endoreg_db/models/prediction/image_classification.py +37 -37
  290. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  291. endoreg_db/models/product/__init__.py +4 -4
  292. endoreg_db/models/product/product.py +97 -97
  293. endoreg_db/models/product/product_group.py +19 -19
  294. endoreg_db/models/product/product_material.py +24 -24
  295. endoreg_db/models/product/product_weight.py +26 -26
  296. endoreg_db/models/product/reference_product.py +99 -99
  297. endoreg_db/models/questionnaires/__init__.py +114 -114
  298. endoreg_db/models/quiz/__init__.py +1 -1
  299. endoreg_db/models/quiz/quiz_answer.py +41 -41
  300. endoreg_db/models/quiz/quiz_question.py +54 -54
  301. endoreg_db/models/report_reader/__init__.py +1 -1
  302. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  303. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  304. endoreg_db/models/rules/__init__.py +4 -4
  305. endoreg_db/models/rules/rule.py +23 -23
  306. endoreg_db/models/rules/rule_applicator.py +224 -224
  307. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  308. endoreg_db/models/rules/rule_type.py +21 -21
  309. endoreg_db/models/rules/ruleset.py +19 -19
  310. endoreg_db/models/unit.py +21 -21
  311. endoreg_db/queries/__init__.py +4 -4
  312. endoreg_db/queries/annotations/__init__.py +2 -2
  313. endoreg_db/queries/annotations/legacy.py +159 -159
  314. endoreg_db/queries/get/__init__.py +5 -5
  315. endoreg_db/queries/get/center.py +42 -42
  316. endoreg_db/queries/get/model.py +13 -13
  317. endoreg_db/queries/get/patient.py +14 -14
  318. endoreg_db/queries/get/patient_examination.py +20 -20
  319. endoreg_db/queries/get/report_file.py +33 -33
  320. endoreg_db/queries/get/video.py +31 -31
  321. endoreg_db/serializers/__init__.py +9 -9
  322. endoreg_db/serializers/ai_model.py +18 -18
  323. endoreg_db/serializers/annotation.py +17 -17
  324. endoreg_db/serializers/center.py +11 -11
  325. endoreg_db/serializers/examination.py +32 -32
  326. endoreg_db/serializers/frame.py +13 -13
  327. endoreg_db/serializers/hardware.py +20 -20
  328. endoreg_db/serializers/label.py +22 -22
  329. endoreg_db/serializers/patient.py +10 -10
  330. endoreg_db/serializers/prediction.py +15 -15
  331. endoreg_db/serializers/report_file.py +7 -7
  332. endoreg_db/serializers/video.py +27 -27
  333. endoreg_db/tests.py +3 -3
  334. endoreg_db/utils/cropping.py +28 -28
  335. endoreg_db/utils/dataloader.py +92 -92
  336. endoreg_db/utils/file_operations.py +30 -30
  337. endoreg_db/utils/hashs.py +33 -33
  338. endoreg_db/utils/legacy_ocr.py +201 -201
  339. endoreg_db/utils/ocr.py +197 -197
  340. endoreg_db/utils/uuid.py +4 -4
  341. endoreg_db/utils/video_metadata.py +87 -87
  342. endoreg_db/views.py +3 -3
  343. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/LICENSE +674 -674
  344. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/METADATA +2 -2
  345. endoreg_db-0.3.7.dist-info/RECORD +363 -0
  346. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.7.dist-info}/WHEEL +1 -1
  347. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import Event
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import EVENT_DATA_DIR as SOURCE_DIR
5
-
6
- MODEL_0 = Event
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": [], # e.g. ["intervention_types"]
17
- "foreign_key_models": [] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import Event
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import EVENT_DATA_DIR as SOURCE_DIR
5
+
6
+ MODEL_0 = Event
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": [], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,75 +1,75 @@
1
- from django.conf import settings
2
- from django.core.management.base import BaseCommand
3
- from ...models import (
4
- Examination,
5
- ExaminationType, # Replace 'your_app_name' with the actual app name
6
- ExaminationTime,
7
- ExaminationTimeType,
8
- )
9
- import os
10
- from ...utils import load_model_data_from_yaml
11
- from ...data import EXAMINATION_DATA_DIR
12
-
13
- SOURCE_DIR = EXAMINATION_DATA_DIR
14
-
15
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
16
- "ExaminationType",
17
- "Examination",
18
- "ExaminationTimeType",
19
- "ExaminationTime"
20
- ]
21
-
22
- IMPORT_METADATA = {
23
- # "": { # same as model name in "import models", e.g. "Intervention"
24
- # "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
25
- # "model": None, # e.g. Intervention
26
- # "foreign_keys": [], # e.g. ["intervention_types"]
27
- # "foreign_key_models": [] # e.g. [InterventionType]
28
- # },
29
- "ExaminationType": {
30
- "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
31
- "model": ExaminationType, # e.g. Intervention
32
- "foreign_keys": [], # e.g. ["intervention_types"]
33
- "foreign_key_models": [] # e.g. [InterventionType]
34
- },
35
- "Examination": {
36
- "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
37
- "model": Examination, # e.g. Intervention
38
- "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
39
- "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
40
- },
41
- "ExaminationTimeType": {
42
- "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
43
- "model": ExaminationTimeType, # e.g. Intervention
44
- "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
45
- "foreign_key_models": [Examination] # e.g. [InterventionType]
46
- },
47
- "ExaminationTime": {
48
- "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
49
- "model": ExaminationTime, # e.g. Intervention
50
- "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
51
- "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
52
- },
53
- }
54
-
55
- class Command(BaseCommand):
56
- help = """Load all .yaml files in the data/intervention directory
57
- into the Intervention and InterventionType model"""
58
-
59
- def add_arguments(self, parser):
60
- parser.add_argument(
61
- '--verbose',
62
- action='store_true',
63
- help='Display verbose output',
64
- )
65
-
66
- def handle(self, *args, **options):
67
- verbose = options['verbose']
68
- for model_name in IMPORT_MODELS:
69
- _metadata = IMPORT_METADATA[model_name]
70
- load_model_data_from_yaml(
71
- self,
72
- model_name,
73
- _metadata,
74
- verbose
1
+ from django.conf import settings
2
+ from django.core.management.base import BaseCommand
3
+ from ...models import (
4
+ Examination,
5
+ ExaminationType, # Replace 'your_app_name' with the actual app name
6
+ ExaminationTime,
7
+ ExaminationTimeType,
8
+ )
9
+ import os
10
+ from ...utils import load_model_data_from_yaml
11
+ from ...data import EXAMINATION_DATA_DIR
12
+
13
+ SOURCE_DIR = EXAMINATION_DATA_DIR
14
+
15
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
16
+ "ExaminationType",
17
+ "Examination",
18
+ "ExaminationTimeType",
19
+ "ExaminationTime"
20
+ ]
21
+
22
+ IMPORT_METADATA = {
23
+ # "": { # same as model name in "import models", e.g. "Intervention"
24
+ # "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
25
+ # "model": None, # e.g. Intervention
26
+ # "foreign_keys": [], # e.g. ["intervention_types"]
27
+ # "foreign_key_models": [] # e.g. [InterventionType]
28
+ # },
29
+ "ExaminationType": {
30
+ "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
31
+ "model": ExaminationType, # e.g. Intervention
32
+ "foreign_keys": [], # e.g. ["intervention_types"]
33
+ "foreign_key_models": [] # e.g. [InterventionType]
34
+ },
35
+ "Examination": {
36
+ "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
37
+ "model": Examination, # e.g. Intervention
38
+ "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
39
+ "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
40
+ },
41
+ "ExaminationTimeType": {
42
+ "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
43
+ "model": ExaminationTimeType, # e.g. Intervention
44
+ "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
45
+ "foreign_key_models": [Examination] # e.g. [InterventionType]
46
+ },
47
+ "ExaminationTime": {
48
+ "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
49
+ "model": ExaminationTime, # e.g. Intervention
50
+ "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
51
+ "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
52
+ },
53
+ }
54
+
55
+ class Command(BaseCommand):
56
+ help = """Load all .yaml files in the data/intervention directory
57
+ into the Intervention and InterventionType model"""
58
+
59
+ def add_arguments(self, parser):
60
+ parser.add_argument(
61
+ '--verbose',
62
+ action='store_true',
63
+ help='Display verbose output',
64
+ )
65
+
66
+ def handle(self, *args, **options):
67
+ verbose = options['verbose']
68
+ for model_name in IMPORT_MODELS:
69
+ _metadata = IMPORT_METADATA[model_name]
70
+ load_model_data_from_yaml(
71
+ self,
72
+ model_name,
73
+ _metadata,
74
+ verbose
75
75
  )
@@ -1,113 +1,113 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- CaseTemplateRuleType,
4
- CaseTemplateRuleValueType,
5
- CaseTemplateRuleValue,
6
- CaseTemplateRule,
7
- CaseTemplateType,
8
- CaseTemplate,
9
- SingleCategoricalValueDistribution,
10
- NumericValueDistribution,
11
- MultipleCategoricalValueDistribution,
12
- DateValueDistribution,
13
-
14
- QuizQuestionType,
15
- QuizAnswerType,
16
- QuizQuestion,
17
- QuizAnswer,
18
-
19
- # Other models for ForeignKeys
20
- Unit, Center
21
- )
22
- from collections import OrderedDict
23
-
24
- from ...utils import load_model_data_from_yaml
25
- from ...data import (
26
- CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
27
- CASE_TEMPLATE_RULE_DATA_DIR,
28
- CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
29
- CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
30
- CASE_TEMPLATE_TYPE_DATA_DIR,
31
- CASE_TEMPLATE_DATA_DIR,
32
- )
33
-
34
- IMPORT_METADATA = OrderedDict({
35
- CaseTemplateRuleType.__name__: {
36
- "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
37
- "model": CaseTemplateRuleType,
38
- "foreign_keys": [],
39
- "foreign_key_models": []
40
- },
41
- CaseTemplateRuleValueType.__name__: {
42
- "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
43
- "model": CaseTemplateRuleValueType,
44
- "foreign_keys": [],
45
- "foreign_key_models": []
46
- },
47
- CaseTemplateRuleValue.__name__: {
48
- "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
49
- "model": CaseTemplateRuleValue,
50
- "foreign_keys": ["value_type"],
51
- "foreign_key_models": [CaseTemplateRuleValueType]
52
- },
53
- CaseTemplateRule.__name__: {
54
- "dir": CASE_TEMPLATE_RULE_DATA_DIR,
55
- "model": CaseTemplateRule,
56
- "foreign_keys": [
57
- "rule_type",
58
- # "rule_values",
59
- "chained_rules",
60
- "value_type",
61
- "single_categorical_value_distribution",
62
- "numerical_value_distribution",
63
- "multiple_categorical_value_distribution",
64
- "date_value_distribution"
65
- ],
66
- "foreign_key_models": [
67
- CaseTemplateRuleType,
68
- # CaseTemplateRuleValue,
69
- CaseTemplateRule,
70
- CaseTemplateRuleValueType,
71
- SingleCategoricalValueDistribution,
72
- NumericValueDistribution,
73
- MultipleCategoricalValueDistribution,
74
- DateValueDistribution
75
-
76
- ]
77
- },
78
- CaseTemplateType.__name__: {
79
- "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
80
- "model": CaseTemplateType,
81
- "foreign_keys": [],
82
- "foreign_key_models": []
83
- },
84
- CaseTemplate.__name__: {
85
- "dir": CASE_TEMPLATE_DATA_DIR,
86
- "model": CaseTemplate,
87
- "foreign_keys": ["template_type", "rules"],
88
- "foreign_key_models": [CaseTemplateType, CaseTemplateRule]
89
- },
90
-
91
- })
92
-
93
- class Command(BaseCommand):
94
- help = """Load all .yaml files in the data/intervention directory
95
- into the Intervention and InterventionType model"""
96
-
97
- def add_arguments(self, parser):
98
- parser.add_argument(
99
- '--verbose',
100
- action='store_true',
101
- help='Display verbose output',
102
- )
103
-
104
- def handle(self, *args, **options):
105
- verbose = options['verbose']
106
- for model_name in IMPORT_METADATA.keys():
107
- _metadata = IMPORT_METADATA[model_name]
108
- load_model_data_from_yaml(
109
- self,
110
- model_name,
111
- _metadata,
112
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ CaseTemplateRuleType,
4
+ CaseTemplateRuleValueType,
5
+ CaseTemplateRuleValue,
6
+ CaseTemplateRule,
7
+ CaseTemplateType,
8
+ CaseTemplate,
9
+ SingleCategoricalValueDistribution,
10
+ NumericValueDistribution,
11
+ MultipleCategoricalValueDistribution,
12
+ DateValueDistribution,
13
+
14
+ QuizQuestionType,
15
+ QuizAnswerType,
16
+ QuizQuestion,
17
+ QuizAnswer,
18
+
19
+ # Other models for ForeignKeys
20
+ Unit, Center
21
+ )
22
+ from collections import OrderedDict
23
+
24
+ from ...utils import load_model_data_from_yaml
25
+ from ...data import (
26
+ CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
27
+ CASE_TEMPLATE_RULE_DATA_DIR,
28
+ CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
29
+ CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
30
+ CASE_TEMPLATE_TYPE_DATA_DIR,
31
+ CASE_TEMPLATE_DATA_DIR,
32
+ )
33
+
34
+ IMPORT_METADATA = OrderedDict({
35
+ CaseTemplateRuleType.__name__: {
36
+ "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
37
+ "model": CaseTemplateRuleType,
38
+ "foreign_keys": [],
39
+ "foreign_key_models": []
40
+ },
41
+ CaseTemplateRuleValueType.__name__: {
42
+ "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
43
+ "model": CaseTemplateRuleValueType,
44
+ "foreign_keys": [],
45
+ "foreign_key_models": []
46
+ },
47
+ CaseTemplateRuleValue.__name__: {
48
+ "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
49
+ "model": CaseTemplateRuleValue,
50
+ "foreign_keys": ["value_type"],
51
+ "foreign_key_models": [CaseTemplateRuleValueType]
52
+ },
53
+ CaseTemplateRule.__name__: {
54
+ "dir": CASE_TEMPLATE_RULE_DATA_DIR,
55
+ "model": CaseTemplateRule,
56
+ "foreign_keys": [
57
+ "rule_type",
58
+ # "rule_values",
59
+ "chained_rules",
60
+ "value_type",
61
+ "single_categorical_value_distribution",
62
+ "numerical_value_distribution",
63
+ "multiple_categorical_value_distribution",
64
+ "date_value_distribution"
65
+ ],
66
+ "foreign_key_models": [
67
+ CaseTemplateRuleType,
68
+ # CaseTemplateRuleValue,
69
+ CaseTemplateRule,
70
+ CaseTemplateRuleValueType,
71
+ SingleCategoricalValueDistribution,
72
+ NumericValueDistribution,
73
+ MultipleCategoricalValueDistribution,
74
+ DateValueDistribution
75
+
76
+ ]
77
+ },
78
+ CaseTemplateType.__name__: {
79
+ "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
80
+ "model": CaseTemplateType,
81
+ "foreign_keys": [],
82
+ "foreign_key_models": []
83
+ },
84
+ CaseTemplate.__name__: {
85
+ "dir": CASE_TEMPLATE_DATA_DIR,
86
+ "model": CaseTemplate,
87
+ "foreign_keys": ["template_type", "rules"],
88
+ "foreign_key_models": [CaseTemplateType, CaseTemplateRule]
89
+ },
90
+
91
+ })
92
+
93
+ class Command(BaseCommand):
94
+ help = """Load all .yaml files in the data/intervention directory
95
+ into the Intervention and InterventionType model"""
96
+
97
+ def add_arguments(self, parser):
98
+ parser.add_argument(
99
+ '--verbose',
100
+ action='store_true',
101
+ help='Display verbose output',
102
+ )
103
+
104
+ def handle(self, *args, **options):
105
+ verbose = options['verbose']
106
+ for model_name in IMPORT_METADATA.keys():
107
+ _metadata = IMPORT_METADATA[model_name]
108
+ load_model_data_from_yaml(
109
+ self,
110
+ model_name,
111
+ _metadata,
112
+ verbose
113
113
  )
@@ -1,44 +1,44 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- Gender,
4
-
5
- # Other models for ForeignKeys
6
- Unit, Center
7
- )
8
- from collections import OrderedDict
9
-
10
- from ...utils import load_model_data_from_yaml
11
- from ...data import (
12
- GENDER_DATA_DIR,
13
- )
14
-
15
- IMPORT_METADATA = OrderedDict({
16
- Gender.__name__: {
17
- "dir": GENDER_DATA_DIR,
18
- "model": Gender,
19
- "foreign_keys": [],
20
- "foreign_key_models": []
21
- },
22
- })
23
-
24
- class Command(BaseCommand):
25
- help = """Load all .yaml files in the data/intervention directory
26
- into the Intervention and InterventionType model"""
27
-
28
- def add_arguments(self, parser):
29
- parser.add_argument(
30
- '--verbose',
31
- action='store_true',
32
- help='Display verbose output',
33
- )
34
-
35
- def handle(self, *args, **options):
36
- verbose = options['verbose']
37
- for model_name in IMPORT_METADATA.keys():
38
- _metadata = IMPORT_METADATA[model_name]
39
- load_model_data_from_yaml(
40
- self,
41
- model_name,
42
- _metadata,
43
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ Gender,
4
+
5
+ # Other models for ForeignKeys
6
+ Unit, Center
7
+ )
8
+ from collections import OrderedDict
9
+
10
+ from ...utils import load_model_data_from_yaml
11
+ from ...data import (
12
+ GENDER_DATA_DIR,
13
+ )
14
+
15
+ IMPORT_METADATA = OrderedDict({
16
+ Gender.__name__: {
17
+ "dir": GENDER_DATA_DIR,
18
+ "model": Gender,
19
+ "foreign_keys": [],
20
+ "foreign_key_models": []
21
+ },
22
+ })
23
+
24
+ class Command(BaseCommand):
25
+ help = """Load all .yaml files in the data/intervention directory
26
+ into the Intervention and InterventionType model"""
27
+
28
+ def add_arguments(self, parser):
29
+ parser.add_argument(
30
+ '--verbose',
31
+ action='store_true',
32
+ help='Display verbose output',
33
+ )
34
+
35
+ def handle(self, *args, **options):
36
+ verbose = options['verbose']
37
+ for model_name in IMPORT_METADATA.keys():
38
+ _metadata = IMPORT_METADATA[model_name]
39
+ load_model_data_from_yaml(
40
+ self,
41
+ model_name,
42
+ _metadata,
43
+ verbose
44
44
  )