arctrl 3.0.0a3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (456) hide show
  1. arctrl/__init__.py +18 -0
  2. arctrl/py/CWL/__init__.py +0 -0
  3. arctrl/py/CWL/cwltypes.py +150 -0
  4. arctrl/py/CWL/decode.py +973 -0
  5. arctrl/py/CWL/encode.py +1 -0
  6. arctrl/py/CWL/inputs.py +88 -0
  7. arctrl/py/CWL/outputs.py +85 -0
  8. arctrl/py/CWL/requirements.py +77 -0
  9. arctrl/py/CWL/tool_description.py +103 -0
  10. arctrl/py/CWL/workflow_description.py +104 -0
  11. arctrl/py/CWL/workflow_steps.py +113 -0
  12. arctrl/py/Contract/__init__.py +0 -0
  13. arctrl/py/Contract/arc.py +60 -0
  14. arctrl/py/Contract/arc_assay.py +125 -0
  15. arctrl/py/Contract/arc_investigation.py +88 -0
  16. arctrl/py/Contract/arc_run.py +125 -0
  17. arctrl/py/Contract/arc_study.py +126 -0
  18. arctrl/py/Contract/arc_workflow.py +125 -0
  19. arctrl/py/Contract/contract.py +153 -0
  20. arctrl/py/Contract/datamap.py +372 -0
  21. arctrl/py/Contract/git.py +118 -0
  22. arctrl/py/Contract/validation_packages_config.py +107 -0
  23. arctrl/py/ContractIO/__init__.py +0 -0
  24. arctrl/py/ContractIO/contract_io.py +344 -0
  25. arctrl/py/ContractIO/file_system_helper.py +264 -0
  26. arctrl/py/Core/Helper/__init__.py +0 -0
  27. arctrl/py/Core/Helper/collections_.py +438 -0
  28. arctrl/py/Core/Helper/date_time.py +26 -0
  29. arctrl/py/Core/Helper/hash_codes.py +60 -0
  30. arctrl/py/Core/Helper/identifier.py +248 -0
  31. arctrl/py/Core/Helper/orcid.py +42 -0
  32. arctrl/py/Core/Helper/printer.py +13 -0
  33. arctrl/py/Core/Helper/regex.py +554 -0
  34. arctrl/py/Core/Helper/sem_ver.py +71 -0
  35. arctrl/py/Core/Helper/url.py +148 -0
  36. arctrl/py/Core/Process/__init__.py +0 -0
  37. arctrl/py/Core/Process/column_index.py +280 -0
  38. arctrl/py/Core/Process/component.py +200 -0
  39. arctrl/py/Core/Process/factor.py +151 -0
  40. arctrl/py/Core/Process/factor_value.py +182 -0
  41. arctrl/py/Core/Process/material.py +74 -0
  42. arctrl/py/Core/Process/material_attribute.py +95 -0
  43. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  44. arctrl/py/Core/Process/material_type.py +45 -0
  45. arctrl/py/Core/Process/process.py +477 -0
  46. arctrl/py/Core/Process/process_input.py +265 -0
  47. arctrl/py/Core/Process/process_output.py +235 -0
  48. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  49. arctrl/py/Core/Process/process_sequence.py +435 -0
  50. arctrl/py/Core/Process/protocol.py +175 -0
  51. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  52. arctrl/py/Core/Process/sample.py +82 -0
  53. arctrl/py/Core/Process/source.py +62 -0
  54. arctrl/py/Core/Table/__init__.py +0 -0
  55. arctrl/py/Core/Table/arc_table.py +1264 -0
  56. arctrl/py/Core/Table/arc_table_aux.py +575 -0
  57. arctrl/py/Core/Table/arc_tables.py +591 -0
  58. arctrl/py/Core/Table/composite_cell.py +319 -0
  59. arctrl/py/Core/Table/composite_column.py +73 -0
  60. arctrl/py/Core/Table/composite_header.py +739 -0
  61. arctrl/py/Core/__init__.py +0 -0
  62. arctrl/py/Core/arc_types.py +5064 -0
  63. arctrl/py/Core/comment.py +128 -0
  64. arctrl/py/Core/comment_list.py +127 -0
  65. arctrl/py/Core/conversion.py +1313 -0
  66. arctrl/py/Core/data.py +245 -0
  67. arctrl/py/Core/data_context.py +157 -0
  68. arctrl/py/Core/data_file.py +112 -0
  69. arctrl/py/Core/data_map.py +225 -0
  70. arctrl/py/Core/identifier_setters.py +31 -0
  71. arctrl/py/Core/iproperty_value.py +36 -0
  72. arctrl/py/Core/ontology_annotation.py +299 -0
  73. arctrl/py/Core/ontology_source_reference.py +114 -0
  74. arctrl/py/Core/person.py +259 -0
  75. arctrl/py/Core/publication.py +161 -0
  76. arctrl/py/Core/template.py +231 -0
  77. arctrl/py/Core/templates.py +148 -0
  78. arctrl/py/Core/uri.py +11 -0
  79. arctrl/py/Core/value.py +188 -0
  80. arctrl/py/FileSystem/__init__.py +0 -0
  81. arctrl/py/FileSystem/commit.py +21 -0
  82. arctrl/py/FileSystem/default_gitattributes.py +5 -0
  83. arctrl/py/FileSystem/default_gitignore.py +5 -0
  84. arctrl/py/FileSystem/file_system.py +58 -0
  85. arctrl/py/FileSystem/file_system_tree.py +426 -0
  86. arctrl/py/FileSystem/path.py +64 -0
  87. arctrl/py/Json/DataMap/__init__.py +0 -0
  88. arctrl/py/Json/DataMap/data_context.py +101 -0
  89. arctrl/py/Json/DataMap/data_map.py +53 -0
  90. arctrl/py/Json/Process/__init__.py +0 -0
  91. arctrl/py/Json/Process/assay_materials.py +46 -0
  92. arctrl/py/Json/Process/component.py +79 -0
  93. arctrl/py/Json/Process/factor.py +107 -0
  94. arctrl/py/Json/Process/factor_value.py +101 -0
  95. arctrl/py/Json/Process/material.py +226 -0
  96. arctrl/py/Json/Process/material_attribute.py +79 -0
  97. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  98. arctrl/py/Json/Process/material_type.py +53 -0
  99. arctrl/py/Json/Process/process.py +296 -0
  100. arctrl/py/Json/Process/process_input.py +83 -0
  101. arctrl/py/Json/Process/process_output.py +67 -0
  102. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  103. arctrl/py/Json/Process/protocol.py +354 -0
  104. arctrl/py/Json/Process/protocol_parameter.py +79 -0
  105. arctrl/py/Json/Process/sample.py +277 -0
  106. arctrl/py/Json/Process/source.py +214 -0
  107. arctrl/py/Json/Process/study_materials.py +52 -0
  108. arctrl/py/Json/Process/value.py +56 -0
  109. arctrl/py/Json/ROCrate/__init__.py +0 -0
  110. arctrl/py/Json/ROCrate/ldcontext.py +133 -0
  111. arctrl/py/Json/ROCrate/ldgraph.py +111 -0
  112. arctrl/py/Json/ROCrate/ldnode.py +290 -0
  113. arctrl/py/Json/ROCrate/ldref.py +44 -0
  114. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  115. arctrl/py/Json/Table/__init__.py +0 -0
  116. arctrl/py/Json/Table/arc_table.py +393 -0
  117. arctrl/py/Json/Table/cell_table.py +83 -0
  118. arctrl/py/Json/Table/composite_cell.py +136 -0
  119. arctrl/py/Json/Table/composite_header.py +67 -0
  120. arctrl/py/Json/Table/iotype.py +24 -0
  121. arctrl/py/Json/Table/oatable.py +82 -0
  122. arctrl/py/Json/Table/templates.py +281 -0
  123. arctrl/py/Json/__init__.py +0 -0
  124. arctrl/py/Json/assay.py +600 -0
  125. arctrl/py/Json/comment.py +206 -0
  126. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  127. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  128. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  129. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  130. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  131. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  132. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  133. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  134. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  135. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  136. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  137. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  138. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  139. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  140. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  141. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  142. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  143. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  144. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  145. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  146. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  147. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  148. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  149. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  150. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  151. arctrl/py/Json/converter_options.py +23 -0
  152. arctrl/py/Json/data.py +356 -0
  153. arctrl/py/Json/data_file.py +63 -0
  154. arctrl/py/Json/decode.py +155 -0
  155. arctrl/py/Json/encode.py +92 -0
  156. arctrl/py/Json/idtable.py +44 -0
  157. arctrl/py/Json/investigation.py +695 -0
  158. arctrl/py/Json/ontology_annotation.py +404 -0
  159. arctrl/py/Json/ontology_source_reference.py +255 -0
  160. arctrl/py/Json/person.py +658 -0
  161. arctrl/py/Json/property_value.py +359 -0
  162. arctrl/py/Json/publication.py +279 -0
  163. arctrl/py/Json/string_table.py +76 -0
  164. arctrl/py/Json/study.py +793 -0
  165. arctrl/py/JsonIO/DataMap/__init__.py +0 -0
  166. arctrl/py/JsonIO/DataMap/data_map.py +53 -0
  167. arctrl/py/JsonIO/Process/__init__.py +0 -0
  168. arctrl/py/JsonIO/Process/component.py +60 -0
  169. arctrl/py/JsonIO/Process/factor.py +36 -0
  170. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  171. arctrl/py/JsonIO/Process/material.py +60 -0
  172. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  173. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  174. arctrl/py/JsonIO/Process/material_type.py +36 -0
  175. arctrl/py/JsonIO/Process/process.py +60 -0
  176. arctrl/py/JsonIO/Process/process_input.py +38 -0
  177. arctrl/py/JsonIO/Process/process_output.py +60 -0
  178. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  179. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  180. arctrl/py/JsonIO/Process/protocol.py +60 -0
  181. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  182. arctrl/py/JsonIO/Process/sample.py +60 -0
  183. arctrl/py/JsonIO/Process/source.py +60 -0
  184. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  185. arctrl/py/JsonIO/Process/value.py +32 -0
  186. arctrl/py/JsonIO/Table/__init__.py +0 -0
  187. arctrl/py/JsonIO/Table/arc_table.py +121 -0
  188. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  189. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  190. arctrl/py/JsonIO/Table/compression.py +85 -0
  191. arctrl/py/JsonIO/Table/iotype.py +36 -0
  192. arctrl/py/JsonIO/Table/templates.py +113 -0
  193. arctrl/py/JsonIO/__init__.py +0 -0
  194. arctrl/py/JsonIO/assay.py +113 -0
  195. arctrl/py/JsonIO/comment.py +80 -0
  196. arctrl/py/JsonIO/data.py +60 -0
  197. arctrl/py/JsonIO/data_file.py +58 -0
  198. arctrl/py/JsonIO/decode.py +9 -0
  199. arctrl/py/JsonIO/encode.py +1 -0
  200. arctrl/py/JsonIO/investigation.py +113 -0
  201. arctrl/py/JsonIO/ldobject.py +106 -0
  202. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  203. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  204. arctrl/py/JsonIO/person.py +82 -0
  205. arctrl/py/JsonIO/publication.py +82 -0
  206. arctrl/py/JsonIO/study.py +114 -0
  207. arctrl/py/ROCrate/Generic/__init__.py +0 -0
  208. arctrl/py/ROCrate/Generic/comment.py +131 -0
  209. arctrl/py/ROCrate/Generic/dataset.py +817 -0
  210. arctrl/py/ROCrate/Generic/defined_term.py +131 -0
  211. arctrl/py/ROCrate/Generic/file.py +237 -0
  212. arctrl/py/ROCrate/Generic/lab_process.py +324 -0
  213. arctrl/py/ROCrate/Generic/lab_protocol.py +338 -0
  214. arctrl/py/ROCrate/Generic/organization.py +83 -0
  215. arctrl/py/ROCrate/Generic/person.py +484 -0
  216. arctrl/py/ROCrate/Generic/postal_address.py +195 -0
  217. arctrl/py/ROCrate/Generic/property_value.py +696 -0
  218. arctrl/py/ROCrate/Generic/sample.py +202 -0
  219. arctrl/py/ROCrate/Generic/scholarly_article.py +229 -0
  220. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  221. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  222. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  223. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  224. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  225. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  226. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  227. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  228. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  229. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  230. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  231. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  232. arctrl/py/ROCrate/__init__.py +0 -0
  233. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  234. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  235. arctrl/py/ROCrate/helper.py +8 -0
  236. arctrl/py/ROCrate/ldcontext.py +362 -0
  237. arctrl/py/ROCrate/ldobject.py +1247 -0
  238. arctrl/py/ROCrate/rocrate_context.py +51 -0
  239. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  240. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +193 -0
  241. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  242. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +210 -0
  243. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  244. arctrl/py/Spreadsheet/DataMapTable/__init__.py +0 -0
  245. arctrl/py/Spreadsheet/DataMapTable/data_map_column.py +114 -0
  246. arctrl/py/Spreadsheet/DataMapTable/data_map_header.py +618 -0
  247. arctrl/py/Spreadsheet/DataMapTable/data_map_table.py +119 -0
  248. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  249. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  250. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  251. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  252. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  253. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  254. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  255. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  256. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  257. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  258. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  259. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  260. arctrl/py/Spreadsheet/Metadata/sparse_table.py +508 -0
  261. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  262. arctrl/py/Spreadsheet/Metadata/workflow.py +151 -0
  263. arctrl/py/Spreadsheet/__init__.py +0 -0
  264. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  265. arctrl/py/Spreadsheet/arc_investigation.py +418 -0
  266. arctrl/py/Spreadsheet/arc_run.py +190 -0
  267. arctrl/py/Spreadsheet/arc_study.py +144 -0
  268. arctrl/py/Spreadsheet/arc_workflow.py +176 -0
  269. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  270. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  271. arctrl/py/Spreadsheet/data_map.py +44 -0
  272. arctrl/py/Spreadsheet/template.py +460 -0
  273. arctrl/py/ValidationPackages/__init__.py +0 -0
  274. arctrl/py/ValidationPackages/validation_package.py +82 -0
  275. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  276. arctrl/py/WebRequest/__init__.py +0 -0
  277. arctrl/py/WebRequest/web_request.py +9 -0
  278. arctrl/py/WebRequest/web_request_py.py +135 -0
  279. arctrl/py/Yaml/__init__.py +0 -0
  280. arctrl/py/Yaml/decode.py +1 -0
  281. arctrl/py/Yaml/encode.py +10 -0
  282. arctrl/py/Yaml/validation_package.py +77 -0
  283. arctrl/py/Yaml/validation_packages_config.py +86 -0
  284. arctrl/py/__init__.py +0 -0
  285. arctrl/py/arc.py +1400 -0
  286. arctrl/py/column_index.py +280 -0
  287. arctrl/py/conversion.py +2184 -0
  288. arctrl/py/cross_async.py +76 -0
  289. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  290. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  291. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  292. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  293. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  294. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  295. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  296. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  297. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  298. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  299. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  300. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  301. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  302. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  303. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  304. arctrl/py/fable_modules/fable_library/char.py +237 -0
  305. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  306. arctrl/py/fable_modules/fable_library/date.py +779 -0
  307. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  308. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  309. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  310. arctrl/py/fable_modules/fable_library/double.py +87 -0
  311. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  312. arctrl/py/fable_modules/fable_library/event.py +206 -0
  313. arctrl/py/fable_modules/fable_library/file.py +107 -0
  314. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  315. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  316. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  317. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  318. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  319. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  320. arctrl/py/fable_modules/fable_library/long.py +240 -0
  321. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  322. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  323. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  324. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  325. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  326. arctrl/py/fable_modules/fable_library/native.py +45 -0
  327. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  328. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  329. arctrl/py/fable_modules/fable_library/option.py +128 -0
  330. arctrl/py/fable_modules/fable_library/path.py +62 -0
  331. arctrl/py/fable_modules/fable_library/range.py +117 -0
  332. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  333. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  334. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  335. arctrl/py/fable_modules/fable_library/result.py +212 -0
  336. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  337. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  338. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  339. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  340. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  341. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  342. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  343. arctrl/py/fable_modules/fable_library/task.py +116 -0
  344. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  345. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  346. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  347. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  348. arctrl/py/fable_modules/fable_library/types.py +401 -0
  349. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  350. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  351. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  352. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  353. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  354. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  355. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  356. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  357. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  358. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  359. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  360. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  361. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  362. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  363. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  364. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  365. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  366. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  367. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  368. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  369. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  370. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  371. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  372. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  373. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  374. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  375. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  376. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  377. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  378. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +338 -0
  379. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +469 -0
  380. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  381. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  382. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  383. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  384. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  385. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  386. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  387. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  388. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  389. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +464 -0
  390. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  391. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  392. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  393. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  394. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  395. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  396. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +57 -0
  397. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  398. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  399. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +217 -0
  400. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  401. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +47 -0
  402. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +186 -0
  403. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +90 -0
  404. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +78 -0
  405. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  406. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  407. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +393 -0
  408. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +127 -0
  409. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  410. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  411. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +218 -0
  412. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  413. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  414. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +180 -0
  415. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +600 -0
  416. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +330 -0
  417. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  418. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +63 -0
  419. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  420. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  421. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  422. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +53 -0
  423. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +40 -0
  424. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +54 -0
  425. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  426. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  427. arctrl/py/fable_modules/thoth_json_core/decode.py +1588 -0
  428. arctrl/py/fable_modules/thoth_json_core/encode.py +261 -0
  429. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  430. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  431. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  432. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  433. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  434. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  435. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  436. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  437. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  438. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  439. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  440. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  441. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  442. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  443. arctrl/py/fable_modules/yamlicious/reader.py +665 -0
  444. arctrl/py/fable_modules/yamlicious/regex.py +21 -0
  445. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +256 -0
  446. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  447. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  448. arctrl/py/json.py +213 -0
  449. arctrl/py/rocrate_io.py +72 -0
  450. arctrl/py/template_web.py +23 -0
  451. arctrl/py/xlsx.py +148 -0
  452. arctrl/rocrate.py +21 -0
  453. arctrl-3.0.0a3.dist-info/LICENSE +21 -0
  454. arctrl-3.0.0a3.dist-info/METADATA +119 -0
  455. arctrl-3.0.0a3.dist-info/RECORD +456 -0
  456. arctrl-3.0.0a3.dist-info/WHEEL +4 -0
@@ -0,0 +1,162 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr1572() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.LabProcess", None, LabProcess, LDNode_reflection())
13
+
14
+
15
+ class LabProcess(LDNode):
16
+ def __init__(self, id: str, name: Any=None, agent: Any=None, object: Any=None, result: Any=None, additional_type: Array[str] | None=None, executes_lab_protocol: Any | None=None, parameter_value: Any | None=None, end_time: Any | None=None, disambiguating_description: Any | None=None) -> None:
17
+ super().__init__(id, ["bioschemas.org/LabProcess"], default_arg(additional_type, []))
18
+ this: FSharpRef[LabProcess] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("name", name, this.contents)
22
+ set_property("agent", agent, this.contents)
23
+ set_property("object", object, this.contents)
24
+ set_property("result", result, this.contents)
25
+ set_optional_property("executesLabProtocol", executes_lab_protocol, this.contents)
26
+ set_optional_property("parameterValue", parameter_value, this.contents)
27
+ set_optional_property("endTime", end_time, this.contents)
28
+ set_optional_property("disambiguatingDescription", disambiguating_description, this.contents)
29
+
30
+ def GetName(self, __unit: None=None) -> str:
31
+ this: LabProcess = self
32
+ obj: DynamicObj = this
33
+ if try_get_property_value("name", obj) is not None:
34
+ match_value: str | None
35
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
36
+ if match_value_1 is not None:
37
+ o: Any = value_1(match_value_1)
38
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
39
+
40
+ else:
41
+ match_value = None
42
+
43
+ if match_value is None:
44
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "LabProcess") + "\' object but cannot be cast to \'") + "String") + "\'")
45
+
46
+ else:
47
+ return match_value
48
+
49
+
50
+ else:
51
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "LabProcess") + "\' object although it is mandatory. Was it created correctly?")
52
+
53
+
54
+ @staticmethod
55
+ def get_name() -> Callable[[LabProcess], str]:
56
+ def _arrow1568(lp: LabProcess) -> str:
57
+ return lp.GetName()
58
+
59
+ return _arrow1568
60
+
61
+ def GetAgent(self, __unit: None=None) -> str:
62
+ this: LabProcess = self
63
+ obj: DynamicObj = this
64
+ if try_get_property_value("agent", obj) is not None:
65
+ match_value: str | None
66
+ match_value_1: Any | None = obj.TryGetPropertyValue("agent")
67
+ if match_value_1 is not None:
68
+ o: Any = value_1(match_value_1)
69
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
70
+
71
+ else:
72
+ match_value = None
73
+
74
+ if match_value is None:
75
+ raise Exception(((((("Property \'" + "agent") + "\' is set on this \'") + "LabProcess") + "\' object but cannot be cast to \'") + "String") + "\'")
76
+
77
+ else:
78
+ return match_value
79
+
80
+
81
+ else:
82
+ raise Exception(((("No property \'" + "agent") + "\' set on this \'") + "LabProcess") + "\' object although it is mandatory. Was it created correctly?")
83
+
84
+
85
+ @staticmethod
86
+ def get_agent() -> Callable[[LabProcess], str]:
87
+ def _arrow1569(lp: LabProcess) -> str:
88
+ return lp.GetAgent()
89
+
90
+ return _arrow1569
91
+
92
+ def GetObject(self, __unit: None=None) -> str:
93
+ this: LabProcess = self
94
+ obj: DynamicObj = this
95
+ if try_get_property_value("object", obj) is not None:
96
+ match_value: str | None
97
+ match_value_1: Any | None = obj.TryGetPropertyValue("object")
98
+ if match_value_1 is not None:
99
+ o: Any = value_1(match_value_1)
100
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
101
+
102
+ else:
103
+ match_value = None
104
+
105
+ if match_value is None:
106
+ raise Exception(((((("Property \'" + "object") + "\' is set on this \'") + "LabProcess") + "\' object but cannot be cast to \'") + "String") + "\'")
107
+
108
+ else:
109
+ return match_value
110
+
111
+
112
+ else:
113
+ raise Exception(((("No property \'" + "object") + "\' set on this \'") + "LabProcess") + "\' object although it is mandatory. Was it created correctly?")
114
+
115
+
116
+ @staticmethod
117
+ def get_object() -> Callable[[LabProcess], str]:
118
+ def _arrow1570(lp: LabProcess) -> str:
119
+ return lp.GetObject()
120
+
121
+ return _arrow1570
122
+
123
+ def GetResult(self, __unit: None=None) -> str:
124
+ this: LabProcess = self
125
+ obj: DynamicObj = this
126
+ if try_get_property_value("result", obj) is not None:
127
+ match_value: str | None
128
+ match_value_1: Any | None = obj.TryGetPropertyValue("result")
129
+ if match_value_1 is not None:
130
+ o: Any = value_1(match_value_1)
131
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
132
+
133
+ else:
134
+ match_value = None
135
+
136
+ if match_value is None:
137
+ raise Exception(((((("Property \'" + "result") + "\' is set on this \'") + "LabProcess") + "\' object but cannot be cast to \'") + "String") + "\'")
138
+
139
+ else:
140
+ return match_value
141
+
142
+
143
+ else:
144
+ raise Exception(((("No property \'" + "result") + "\' set on this \'") + "LabProcess") + "\' object although it is mandatory. Was it created correctly?")
145
+
146
+
147
+ @staticmethod
148
+ def get_result() -> Callable[[LabProcess], str]:
149
+ def _arrow1571(lp: LabProcess) -> str:
150
+ return lp.GetResult()
151
+
152
+ return _arrow1571
153
+
154
+
155
+ LabProcess_reflection = _expr1572
156
+
157
+ def LabProcess__ctor_Z43A9BC86(id: str, name: Any=None, agent: Any=None, object: Any=None, result: Any=None, additional_type: Array[str] | None=None, executes_lab_protocol: Any | None=None, parameter_value: Any | None=None, end_time: Any | None=None, disambiguating_description: Any | None=None) -> LabProcess:
158
+ return LabProcess(id, name, agent, object, result, additional_type, executes_lab_protocol, parameter_value, end_time, disambiguating_description)
159
+
160
+
161
+ __all__ = ["LabProcess_reflection"]
162
+
@@ -0,0 +1,37 @@
1
+ from __future__ import annotations
2
+ from typing import Any
3
+ from ...fable_modules.dynamic_obj.dyn_obj import set_optional_property
4
+ from ...fable_modules.fable_library.option import default_arg
5
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
6
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
7
+ from ..ldobject import (LDNode, LDNode_reflection)
8
+
9
+ def _expr1575() -> TypeInfo:
10
+ return class_type("ARCtrl.ROCrate.LabProtocol", None, LabProtocol, LDNode_reflection())
11
+
12
+
13
+ class LabProtocol(LDNode):
14
+ def __init__(self, id: str, additional_type: Array[str] | None=None, name: Any | None=None, intended_use: Any | None=None, description: Any | None=None, url: Any | None=None, comment: Any | None=None, version: Any | None=None, lab_equipment: Any | None=None, reagent: Any | None=None, computational_tool: Any | None=None) -> None:
15
+ super().__init__(id, ["bioschemas.org/LabProtocol"], default_arg(additional_type, []))
16
+ this: FSharpRef[LabProtocol] = FSharpRef(None)
17
+ this.contents = self
18
+ self.init_00408: int = 1
19
+ set_optional_property("name", name, this.contents)
20
+ set_optional_property("intendedUse", intended_use, this.contents)
21
+ set_optional_property("description", description, this.contents)
22
+ set_optional_property("url", url, this.contents)
23
+ set_optional_property("comment", comment, this.contents)
24
+ set_optional_property("version", version, this.contents)
25
+ set_optional_property("labEquipment", lab_equipment, this.contents)
26
+ set_optional_property("reagent", reagent, this.contents)
27
+ set_optional_property("computationalTool", computational_tool, this.contents)
28
+
29
+
30
+ LabProtocol_reflection = _expr1575
31
+
32
+ def LabProtocol__ctor_Z6F48851E(id: str, additional_type: Array[str] | None=None, name: Any | None=None, intended_use: Any | None=None, description: Any | None=None, url: Any | None=None, comment: Any | None=None, version: Any | None=None, lab_equipment: Any | None=None, reagent: Any | None=None, computational_tool: Any | None=None) -> LabProtocol:
33
+ return LabProtocol(id, additional_type, name, intended_use, description, url, comment, version, lab_equipment, reagent, computational_tool)
34
+
35
+
36
+ __all__ = ["LabProtocol_reflection"]
37
+
@@ -0,0 +1,72 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr1592() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.Person", None, Person, LDNode_reflection())
13
+
14
+
15
+ class Person(LDNode):
16
+ def __init__(self, id: str, given_name: Any=None, additional_type: Array[str] | None=None, family_name: Any | None=None, email: Any | None=None, identifier: Any | None=None, affiliation: Any | None=None, job_title: Any | None=None, additional_name: Any | None=None, address: Any | None=None, telephone: Any | None=None, fax_number: Any | None=None, disambiguating_description: Any | None=None) -> None:
17
+ super().__init__(id, ["schema.org/Person"], default_arg(additional_type, []))
18
+ this: FSharpRef[Person] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("givenName", given_name, this.contents)
22
+ set_optional_property("familyName", family_name, this.contents)
23
+ set_optional_property("email", email, this.contents)
24
+ set_optional_property("identifier", identifier, this.contents)
25
+ set_optional_property("affiliation", affiliation, this.contents)
26
+ set_optional_property("jobTitle", job_title, this.contents)
27
+ set_optional_property("additionalName", additional_name, this.contents)
28
+ set_optional_property("address", address, this.contents)
29
+ set_optional_property("telephone", telephone, this.contents)
30
+ set_optional_property("faxNumber", fax_number, this.contents)
31
+ set_optional_property("disambiguatingDescription", disambiguating_description, this.contents)
32
+
33
+ def GetGivenName(self, __unit: None=None) -> str:
34
+ this: Person = self
35
+ obj: DynamicObj = this
36
+ if try_get_property_value("givenName", obj) is not None:
37
+ match_value: str | None
38
+ match_value_1: Any | None = obj.TryGetPropertyValue("givenName")
39
+ if match_value_1 is not None:
40
+ o: Any = value_1(match_value_1)
41
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
42
+
43
+ else:
44
+ match_value = None
45
+
46
+ if match_value is None:
47
+ raise Exception(((((("Property \'" + "givenName") + "\' is set on this \'") + "Person") + "\' object but cannot be cast to \'") + "String") + "\'")
48
+
49
+ else:
50
+ return match_value
51
+
52
+
53
+ else:
54
+ raise Exception(((("No property \'" + "givenName") + "\' set on this \'") + "Person") + "\' object although it is mandatory. Was it created correctly?")
55
+
56
+
57
+ @staticmethod
58
+ def get_given_name() -> Callable[[Person], str]:
59
+ def _arrow1591(p: Person) -> str:
60
+ return p.GetGivenName()
61
+
62
+ return _arrow1591
63
+
64
+
65
+ Person_reflection = _expr1592
66
+
67
+ def Person__ctor_16EB4AE1(id: str, given_name: Any=None, additional_type: Array[str] | None=None, family_name: Any | None=None, email: Any | None=None, identifier: Any | None=None, affiliation: Any | None=None, job_title: Any | None=None, additional_name: Any | None=None, address: Any | None=None, telephone: Any | None=None, fax_number: Any | None=None, disambiguating_description: Any | None=None) -> Person:
68
+ return Person(id, given_name, additional_type, family_name, email, identifier, affiliation, job_title, additional_name, address, telephone, fax_number, disambiguating_description)
69
+
70
+
71
+ __all__ = ["Person_reflection"]
72
+
@@ -0,0 +1,98 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr1590() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.PropertyValue", None, PropertyValue, LDNode_reflection())
13
+
14
+
15
+ class PropertyValue(LDNode):
16
+ def __init__(self, id: str, name: Any=None, value: Any=None, property_id: Any | None=None, unit_code: Any | None=None, unit_text: Any | None=None, value_reference: Any | None=None, additional_type: Array[str] | None=None) -> None:
17
+ super().__init__(id, ["schema.org/PropertyValue"], default_arg(additional_type, []))
18
+ this: FSharpRef[PropertyValue] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("name", name, this.contents)
22
+ set_property("value", value, this.contents)
23
+ set_optional_property("propertyID", property_id, this.contents)
24
+ set_optional_property("unitCode", unit_code, this.contents)
25
+ set_optional_property("unitText", unit_text, this.contents)
26
+ set_optional_property("valueReference", value_reference, this.contents)
27
+
28
+ def GetName(self, __unit: None=None) -> str:
29
+ this: PropertyValue = self
30
+ obj: DynamicObj = this
31
+ if try_get_property_value("name", obj) is not None:
32
+ match_value: str | None
33
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
34
+ if match_value_1 is not None:
35
+ o: Any = value_1(match_value_1)
36
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
37
+
38
+ else:
39
+ match_value = None
40
+
41
+ if match_value is None:
42
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "PropertyValue") + "\' object but cannot be cast to \'") + "String") + "\'")
43
+
44
+ else:
45
+ return match_value
46
+
47
+
48
+ else:
49
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "PropertyValue") + "\' object although it is mandatory. Was it created correctly?")
50
+
51
+
52
+ @staticmethod
53
+ def get_name() -> Callable[[PropertyValue], str]:
54
+ def _arrow1588(lp: PropertyValue) -> str:
55
+ return lp.GetName()
56
+
57
+ return _arrow1588
58
+
59
+ def GetValue(self, __unit: None=None) -> str:
60
+ this: PropertyValue = self
61
+ obj: DynamicObj = this
62
+ if try_get_property_value("name", obj) is not None:
63
+ match_value: str | None
64
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
65
+ if match_value_1 is not None:
66
+ o: Any = value_1(match_value_1)
67
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
68
+
69
+ else:
70
+ match_value = None
71
+
72
+ if match_value is None:
73
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "PropertyValue") + "\' object but cannot be cast to \'") + "String") + "\'")
74
+
75
+ else:
76
+ return match_value
77
+
78
+
79
+ else:
80
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "PropertyValue") + "\' object although it is mandatory. Was it created correctly?")
81
+
82
+
83
+ @staticmethod
84
+ def get_value() -> Callable[[PropertyValue], str]:
85
+ def _arrow1589(lp: PropertyValue) -> str:
86
+ return lp.GetValue()
87
+
88
+ return _arrow1589
89
+
90
+
91
+ PropertyValue_reflection = _expr1590
92
+
93
+ def PropertyValue__ctor_Z5E5247A6(id: str, name: Any=None, value: Any=None, property_id: Any | None=None, unit_code: Any | None=None, unit_text: Any | None=None, value_reference: Any | None=None, additional_type: Array[str] | None=None) -> PropertyValue:
94
+ return PropertyValue(id, name, value, property_id, unit_code, unit_text, value_reference, additional_type)
95
+
96
+
97
+ __all__ = ["PropertyValue_reflection"]
98
+
@@ -0,0 +1,64 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr1584() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.Sample", None, Sample, LDNode_reflection())
13
+
14
+
15
+ class Sample(LDNode):
16
+ def __init__(self, id: str, name: Any=None, additional_type: Array[str] | None=None, additional_property: Any | None=None, derives_from: Any | None=None) -> None:
17
+ super().__init__(id, ["bioschemas.org/Sample"], default_arg(additional_type, []))
18
+ this: FSharpRef[Sample] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("name", name, this.contents)
22
+ set_optional_property("additionalProperty", additional_property, this.contents)
23
+ set_optional_property("derivesFrom", derives_from, this.contents)
24
+
25
+ def GetName(self, __unit: None=None) -> str:
26
+ this: Sample = self
27
+ obj: DynamicObj = this
28
+ if try_get_property_value("name", obj) is not None:
29
+ match_value: str | None
30
+ match_value_1: Any | None = obj.TryGetPropertyValue("name")
31
+ if match_value_1 is not None:
32
+ o: Any = value_1(match_value_1)
33
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
34
+
35
+ else:
36
+ match_value = None
37
+
38
+ if match_value is None:
39
+ raise Exception(((((("Property \'" + "name") + "\' is set on this \'") + "Sample") + "\' object but cannot be cast to \'") + "String") + "\'")
40
+
41
+ else:
42
+ return match_value
43
+
44
+
45
+ else:
46
+ raise Exception(((("No property \'" + "name") + "\' set on this \'") + "Sample") + "\' object although it is mandatory. Was it created correctly?")
47
+
48
+
49
+ @staticmethod
50
+ def get_name() -> Callable[[Sample], str]:
51
+ def _arrow1583(s: Sample) -> str:
52
+ return s.GetName()
53
+
54
+ return _arrow1583
55
+
56
+
57
+ Sample_reflection = _expr1584
58
+
59
+ def Sample__ctor_Z502AA21F(id: str, name: Any=None, additional_type: Array[str] | None=None, additional_property: Any | None=None, derives_from: Any | None=None) -> Sample:
60
+ return Sample(id, name, additional_type, additional_property, derives_from)
61
+
62
+
63
+ __all__ = ["Sample_reflection"]
64
+
@@ -0,0 +1,98 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import (value as value_1, default_arg)
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import (FSharpRef, Array)
9
+ from ..ldobject import (LDNode, LDNode_reflection)
10
+
11
+ def _expr1595() -> TypeInfo:
12
+ return class_type("ARCtrl.ROCrate.ScholarlyArticle", None, ScholarlyArticle, LDNode_reflection())
13
+
14
+
15
+ class ScholarlyArticle(LDNode):
16
+ def __init__(self, id: str, headline: Any=None, identifier: Any=None, additional_type: Array[str] | None=None, author: Any | None=None, url: Any | None=None, creative_work_status: Any | None=None, disambiguating_description: Any | None=None) -> None:
17
+ super().__init__(id, ["schema.org/ScholarlyArticle"], default_arg(additional_type, []))
18
+ this: FSharpRef[ScholarlyArticle] = FSharpRef(None)
19
+ this.contents = self
20
+ self.init_00408: int = 1
21
+ set_property("headline", headline, this.contents)
22
+ set_property("identifier", identifier, this.contents)
23
+ set_optional_property("author", author, this.contents)
24
+ set_optional_property("url", url, this.contents)
25
+ set_optional_property("creativeWorkStatus", creative_work_status, this.contents)
26
+ set_optional_property("disambiguatingDescription", disambiguating_description, this.contents)
27
+
28
+ def GetHeadline(self, __unit: None=None) -> str:
29
+ this: ScholarlyArticle = self
30
+ obj: DynamicObj = this
31
+ if try_get_property_value("headline", obj) is not None:
32
+ match_value: str | None
33
+ match_value_1: Any | None = obj.TryGetPropertyValue("headline")
34
+ if match_value_1 is not None:
35
+ o: Any = value_1(match_value_1)
36
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
37
+
38
+ else:
39
+ match_value = None
40
+
41
+ if match_value is None:
42
+ raise Exception(((((("Property \'" + "headline") + "\' is set on this \'") + "ScholarlyArticle") + "\' object but cannot be cast to \'") + "String") + "\'")
43
+
44
+ else:
45
+ return match_value
46
+
47
+
48
+ else:
49
+ raise Exception(((("No property \'" + "headline") + "\' set on this \'") + "ScholarlyArticle") + "\' object although it is mandatory. Was it created correctly?")
50
+
51
+
52
+ @staticmethod
53
+ def get_headline() -> Callable[[ScholarlyArticle], str]:
54
+ def _arrow1593(s: ScholarlyArticle) -> str:
55
+ return s.GetHeadline()
56
+
57
+ return _arrow1593
58
+
59
+ def GetIdentifier(self, __unit: None=None) -> str:
60
+ this: ScholarlyArticle = self
61
+ obj: DynamicObj = this
62
+ if try_get_property_value("identifier", obj) is not None:
63
+ match_value: str | None
64
+ match_value_1: Any | None = obj.TryGetPropertyValue("identifier")
65
+ if match_value_1 is not None:
66
+ o: Any = value_1(match_value_1)
67
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
68
+
69
+ else:
70
+ match_value = None
71
+
72
+ if match_value is None:
73
+ raise Exception(((((("Property \'" + "identifier") + "\' is set on this \'") + "ScholarlyArticle") + "\' object but cannot be cast to \'") + "String") + "\'")
74
+
75
+ else:
76
+ return match_value
77
+
78
+
79
+ else:
80
+ raise Exception(((("No property \'" + "identifier") + "\' set on this \'") + "ScholarlyArticle") + "\' object although it is mandatory. Was it created correctly?")
81
+
82
+
83
+ @staticmethod
84
+ def get_identifier() -> Callable[[ScholarlyArticle], str]:
85
+ def _arrow1594(s: ScholarlyArticle) -> str:
86
+ return s.GetIdentifier()
87
+
88
+ return _arrow1594
89
+
90
+
91
+ ScholarlyArticle_reflection = _expr1595
92
+
93
+ def ScholarlyArticle__ctor_Z22702026(id: str, headline: Any=None, identifier: Any=None, additional_type: Array[str] | None=None, author: Any | None=None, url: Any | None=None, creative_work_status: Any | None=None, disambiguating_description: Any | None=None) -> ScholarlyArticle:
94
+ return ScholarlyArticle(id, headline, identifier, additional_type, author, url, creative_work_status, disambiguating_description)
95
+
96
+
97
+ __all__ = ["ScholarlyArticle_reflection"]
98
+
@@ -0,0 +1,74 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import Any
4
+ from ...fable_modules.dynamic_obj.dynamic_obj import DynamicObj
5
+ from ...fable_modules.dynamic_obj.dyn_obj import (try_get_property_value, set_property, set_optional_property)
6
+ from ...fable_modules.fable_library.option import value as value_1
7
+ from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
8
+ from ...fable_modules.fable_library.types import FSharpRef
9
+ from .dataset import (Dataset, Dataset_reflection)
10
+ from .investigation import Investigation
11
+
12
+ def _expr1565() -> TypeInfo:
13
+ return class_type("ARCtrl.ROCrate.Study", None, Study, Dataset_reflection())
14
+
15
+
16
+ class Study(Dataset):
17
+ def __init__(self, id: str, identifier: str, about: Any | None=None, citation: Any | None=None, comment: Any | None=None, creator: Any | None=None, date_created: Any | None=None, date_modified: Any | None=None, date_published: Any | None=None, description: Any | None=None, has_part: Any | None=None, headline: Any | None=None, url: Any | None=None) -> None:
18
+ super().__init__(id, ["Study"])
19
+ this: FSharpRef[Study] = FSharpRef(None)
20
+ this.contents = self
21
+ self.init_00408_1: int = 1
22
+ set_property("identifier", identifier, this.contents)
23
+ set_optional_property("about", about, this.contents)
24
+ set_optional_property("citation", citation, this.contents)
25
+ set_optional_property("comment", comment, this.contents)
26
+ set_optional_property("creator", creator, this.contents)
27
+ set_optional_property("dateCreated", date_created, this.contents)
28
+ set_optional_property("dateModified", date_modified, this.contents)
29
+ set_optional_property("datePublished", date_published, this.contents)
30
+ set_optional_property("description", description, this.contents)
31
+ set_optional_property("hasPart", has_part, this.contents)
32
+ set_optional_property("headline", headline, this.contents)
33
+ set_optional_property("url", url, this.contents)
34
+
35
+ def GetIdentifier(self, __unit: None=None) -> str:
36
+ this: Study = self
37
+ obj: DynamicObj = this
38
+ if try_get_property_value("identifier", obj) is not None:
39
+ match_value: str | None
40
+ match_value_1: Any | None = obj.TryGetPropertyValue("identifier")
41
+ if match_value_1 is not None:
42
+ o: Any = value_1(match_value_1)
43
+ match_value = o if (str(type(o)) == "<class \'str\'>") else None
44
+
45
+ else:
46
+ match_value = None
47
+
48
+ if match_value is None:
49
+ raise Exception(((((("Property \'" + "identifier") + "\' is set on this \'") + "Study") + "\' object but cannot be cast to \'") + "String") + "\'")
50
+
51
+ else:
52
+ return match_value
53
+
54
+
55
+ else:
56
+ raise Exception(((("No property \'" + "identifier") + "\' set on this \'") + "Study") + "\' object although it is mandatory. Was it created correctly?")
57
+
58
+
59
+ @staticmethod
60
+ def get_identifier() -> Callable[[Investigation], str]:
61
+ def _arrow1564(inv: Investigation) -> str:
62
+ return inv.GetIdentifier()
63
+
64
+ return _arrow1564
65
+
66
+
67
+ Study_reflection = _expr1565
68
+
69
+ def Study__ctor_Z47833D48(id: str, identifier: str, about: Any | None=None, citation: Any | None=None, comment: Any | None=None, creator: Any | None=None, date_created: Any | None=None, date_modified: Any | None=None, date_published: Any | None=None, description: Any | None=None, has_part: Any | None=None, headline: Any | None=None, url: Any | None=None) -> Study:
70
+ return Study(id, identifier, about, citation, comment, creator, date_created, date_modified, date_published, description, has_part, headline, url)
71
+
72
+
73
+ __all__ = ["Study_reflection"]
74
+
File without changes
@@ -0,0 +1,39 @@
1
+ from __future__ import annotations
2
+ from ..fable_modules.dynamic_obj.dynamic_obj import DynamicObj
3
+ from ..fable_modules.dynamic_obj.dyn_obj import set_optional_property
4
+ from ..fable_modules.fable_library.reflection import (TypeInfo, class_type)
5
+ from ..fable_modules.fable_library.types import FSharpRef
6
+ from .ldcontext import LDContext
7
+ from .ldobject import (LDNode, LDNode_reflection)
8
+
9
+ def _expr1596() -> TypeInfo:
10
+ return class_type("ARCtrl.ROCrate.ArcROCrateMetadata", None, ArcROCrateMetadata, LDNode_reflection())
11
+
12
+
13
+ class ArcROCrateMetadata(LDNode):
14
+ def __init__(self, about: LDNode | None=None) -> None:
15
+ super().__init__("ro-crate-metadata", ["CreativeWork"])
16
+ this: FSharpRef[ArcROCrateMetadata] = FSharpRef(None)
17
+ this.contents = self
18
+ self.init_00405: int = 1
19
+ set_optional_property("about", about, this.contents)
20
+ conforms_to: DynamicObj = DynamicObj()
21
+ conforms_to.SetProperty("@id", "https://w3id.org/ro/crate/1.1")
22
+ this.contents.SetProperty("conformsTo", conforms_to)
23
+ context: LDContext = LDContext()
24
+ context.AddMapping("sdo", "http://schema.org/")
25
+ context.AddMapping("arc", "http://purl.org/nfdi4plants/ontology/")
26
+ context.AddMapping("CreativeWork", "sdo:CreativeWork")
27
+ context.AddMapping("about", "sdo:about")
28
+ context.AddMapping("conformsTo", "sdo:conformsTo")
29
+ this.contents.SetProperty("@context", context)
30
+
31
+
32
+ ArcROCrateMetadata_reflection = _expr1596
33
+
34
+ def ArcROCrateMetadata__ctor_Z7020538(about: LDNode | None=None) -> ArcROCrateMetadata:
35
+ return ArcROCrateMetadata(about)
36
+
37
+
38
+ __all__ = ["ArcROCrateMetadata_reflection"]
39
+
@@ -0,0 +1 @@
1
+
@@ -0,0 +1,8 @@
1
+ from ..fable_modules.fable_library.string_ import replace
2
+
3
+ def clean(id: str) -> str:
4
+ return replace(id, " ", "_")
5
+
6
+
7
+ __all__ = ["clean"]
8
+