arctrl 3.0.0a3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (456) hide show
  1. arctrl/__init__.py +18 -0
  2. arctrl/py/CWL/__init__.py +0 -0
  3. arctrl/py/CWL/cwltypes.py +150 -0
  4. arctrl/py/CWL/decode.py +973 -0
  5. arctrl/py/CWL/encode.py +1 -0
  6. arctrl/py/CWL/inputs.py +88 -0
  7. arctrl/py/CWL/outputs.py +85 -0
  8. arctrl/py/CWL/requirements.py +77 -0
  9. arctrl/py/CWL/tool_description.py +103 -0
  10. arctrl/py/CWL/workflow_description.py +104 -0
  11. arctrl/py/CWL/workflow_steps.py +113 -0
  12. arctrl/py/Contract/__init__.py +0 -0
  13. arctrl/py/Contract/arc.py +60 -0
  14. arctrl/py/Contract/arc_assay.py +125 -0
  15. arctrl/py/Contract/arc_investigation.py +88 -0
  16. arctrl/py/Contract/arc_run.py +125 -0
  17. arctrl/py/Contract/arc_study.py +126 -0
  18. arctrl/py/Contract/arc_workflow.py +125 -0
  19. arctrl/py/Contract/contract.py +153 -0
  20. arctrl/py/Contract/datamap.py +372 -0
  21. arctrl/py/Contract/git.py +118 -0
  22. arctrl/py/Contract/validation_packages_config.py +107 -0
  23. arctrl/py/ContractIO/__init__.py +0 -0
  24. arctrl/py/ContractIO/contract_io.py +344 -0
  25. arctrl/py/ContractIO/file_system_helper.py +264 -0
  26. arctrl/py/Core/Helper/__init__.py +0 -0
  27. arctrl/py/Core/Helper/collections_.py +438 -0
  28. arctrl/py/Core/Helper/date_time.py +26 -0
  29. arctrl/py/Core/Helper/hash_codes.py +60 -0
  30. arctrl/py/Core/Helper/identifier.py +248 -0
  31. arctrl/py/Core/Helper/orcid.py +42 -0
  32. arctrl/py/Core/Helper/printer.py +13 -0
  33. arctrl/py/Core/Helper/regex.py +554 -0
  34. arctrl/py/Core/Helper/sem_ver.py +71 -0
  35. arctrl/py/Core/Helper/url.py +148 -0
  36. arctrl/py/Core/Process/__init__.py +0 -0
  37. arctrl/py/Core/Process/column_index.py +280 -0
  38. arctrl/py/Core/Process/component.py +200 -0
  39. arctrl/py/Core/Process/factor.py +151 -0
  40. arctrl/py/Core/Process/factor_value.py +182 -0
  41. arctrl/py/Core/Process/material.py +74 -0
  42. arctrl/py/Core/Process/material_attribute.py +95 -0
  43. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  44. arctrl/py/Core/Process/material_type.py +45 -0
  45. arctrl/py/Core/Process/process.py +477 -0
  46. arctrl/py/Core/Process/process_input.py +265 -0
  47. arctrl/py/Core/Process/process_output.py +235 -0
  48. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  49. arctrl/py/Core/Process/process_sequence.py +435 -0
  50. arctrl/py/Core/Process/protocol.py +175 -0
  51. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  52. arctrl/py/Core/Process/sample.py +82 -0
  53. arctrl/py/Core/Process/source.py +62 -0
  54. arctrl/py/Core/Table/__init__.py +0 -0
  55. arctrl/py/Core/Table/arc_table.py +1264 -0
  56. arctrl/py/Core/Table/arc_table_aux.py +575 -0
  57. arctrl/py/Core/Table/arc_tables.py +591 -0
  58. arctrl/py/Core/Table/composite_cell.py +319 -0
  59. arctrl/py/Core/Table/composite_column.py +73 -0
  60. arctrl/py/Core/Table/composite_header.py +739 -0
  61. arctrl/py/Core/__init__.py +0 -0
  62. arctrl/py/Core/arc_types.py +5064 -0
  63. arctrl/py/Core/comment.py +128 -0
  64. arctrl/py/Core/comment_list.py +127 -0
  65. arctrl/py/Core/conversion.py +1313 -0
  66. arctrl/py/Core/data.py +245 -0
  67. arctrl/py/Core/data_context.py +157 -0
  68. arctrl/py/Core/data_file.py +112 -0
  69. arctrl/py/Core/data_map.py +225 -0
  70. arctrl/py/Core/identifier_setters.py +31 -0
  71. arctrl/py/Core/iproperty_value.py +36 -0
  72. arctrl/py/Core/ontology_annotation.py +299 -0
  73. arctrl/py/Core/ontology_source_reference.py +114 -0
  74. arctrl/py/Core/person.py +259 -0
  75. arctrl/py/Core/publication.py +161 -0
  76. arctrl/py/Core/template.py +231 -0
  77. arctrl/py/Core/templates.py +148 -0
  78. arctrl/py/Core/uri.py +11 -0
  79. arctrl/py/Core/value.py +188 -0
  80. arctrl/py/FileSystem/__init__.py +0 -0
  81. arctrl/py/FileSystem/commit.py +21 -0
  82. arctrl/py/FileSystem/default_gitattributes.py +5 -0
  83. arctrl/py/FileSystem/default_gitignore.py +5 -0
  84. arctrl/py/FileSystem/file_system.py +58 -0
  85. arctrl/py/FileSystem/file_system_tree.py +426 -0
  86. arctrl/py/FileSystem/path.py +64 -0
  87. arctrl/py/Json/DataMap/__init__.py +0 -0
  88. arctrl/py/Json/DataMap/data_context.py +101 -0
  89. arctrl/py/Json/DataMap/data_map.py +53 -0
  90. arctrl/py/Json/Process/__init__.py +0 -0
  91. arctrl/py/Json/Process/assay_materials.py +46 -0
  92. arctrl/py/Json/Process/component.py +79 -0
  93. arctrl/py/Json/Process/factor.py +107 -0
  94. arctrl/py/Json/Process/factor_value.py +101 -0
  95. arctrl/py/Json/Process/material.py +226 -0
  96. arctrl/py/Json/Process/material_attribute.py +79 -0
  97. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  98. arctrl/py/Json/Process/material_type.py +53 -0
  99. arctrl/py/Json/Process/process.py +296 -0
  100. arctrl/py/Json/Process/process_input.py +83 -0
  101. arctrl/py/Json/Process/process_output.py +67 -0
  102. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  103. arctrl/py/Json/Process/protocol.py +354 -0
  104. arctrl/py/Json/Process/protocol_parameter.py +79 -0
  105. arctrl/py/Json/Process/sample.py +277 -0
  106. arctrl/py/Json/Process/source.py +214 -0
  107. arctrl/py/Json/Process/study_materials.py +52 -0
  108. arctrl/py/Json/Process/value.py +56 -0
  109. arctrl/py/Json/ROCrate/__init__.py +0 -0
  110. arctrl/py/Json/ROCrate/ldcontext.py +133 -0
  111. arctrl/py/Json/ROCrate/ldgraph.py +111 -0
  112. arctrl/py/Json/ROCrate/ldnode.py +290 -0
  113. arctrl/py/Json/ROCrate/ldref.py +44 -0
  114. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  115. arctrl/py/Json/Table/__init__.py +0 -0
  116. arctrl/py/Json/Table/arc_table.py +393 -0
  117. arctrl/py/Json/Table/cell_table.py +83 -0
  118. arctrl/py/Json/Table/composite_cell.py +136 -0
  119. arctrl/py/Json/Table/composite_header.py +67 -0
  120. arctrl/py/Json/Table/iotype.py +24 -0
  121. arctrl/py/Json/Table/oatable.py +82 -0
  122. arctrl/py/Json/Table/templates.py +281 -0
  123. arctrl/py/Json/__init__.py +0 -0
  124. arctrl/py/Json/assay.py +600 -0
  125. arctrl/py/Json/comment.py +206 -0
  126. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  127. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  128. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  129. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  130. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  131. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  132. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  133. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  134. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  135. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  136. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  137. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  138. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  139. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  140. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  141. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  142. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  143. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  144. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  145. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  146. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  147. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  148. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  149. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  150. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  151. arctrl/py/Json/converter_options.py +23 -0
  152. arctrl/py/Json/data.py +356 -0
  153. arctrl/py/Json/data_file.py +63 -0
  154. arctrl/py/Json/decode.py +155 -0
  155. arctrl/py/Json/encode.py +92 -0
  156. arctrl/py/Json/idtable.py +44 -0
  157. arctrl/py/Json/investigation.py +695 -0
  158. arctrl/py/Json/ontology_annotation.py +404 -0
  159. arctrl/py/Json/ontology_source_reference.py +255 -0
  160. arctrl/py/Json/person.py +658 -0
  161. arctrl/py/Json/property_value.py +359 -0
  162. arctrl/py/Json/publication.py +279 -0
  163. arctrl/py/Json/string_table.py +76 -0
  164. arctrl/py/Json/study.py +793 -0
  165. arctrl/py/JsonIO/DataMap/__init__.py +0 -0
  166. arctrl/py/JsonIO/DataMap/data_map.py +53 -0
  167. arctrl/py/JsonIO/Process/__init__.py +0 -0
  168. arctrl/py/JsonIO/Process/component.py +60 -0
  169. arctrl/py/JsonIO/Process/factor.py +36 -0
  170. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  171. arctrl/py/JsonIO/Process/material.py +60 -0
  172. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  173. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  174. arctrl/py/JsonIO/Process/material_type.py +36 -0
  175. arctrl/py/JsonIO/Process/process.py +60 -0
  176. arctrl/py/JsonIO/Process/process_input.py +38 -0
  177. arctrl/py/JsonIO/Process/process_output.py +60 -0
  178. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  179. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  180. arctrl/py/JsonIO/Process/protocol.py +60 -0
  181. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  182. arctrl/py/JsonIO/Process/sample.py +60 -0
  183. arctrl/py/JsonIO/Process/source.py +60 -0
  184. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  185. arctrl/py/JsonIO/Process/value.py +32 -0
  186. arctrl/py/JsonIO/Table/__init__.py +0 -0
  187. arctrl/py/JsonIO/Table/arc_table.py +121 -0
  188. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  189. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  190. arctrl/py/JsonIO/Table/compression.py +85 -0
  191. arctrl/py/JsonIO/Table/iotype.py +36 -0
  192. arctrl/py/JsonIO/Table/templates.py +113 -0
  193. arctrl/py/JsonIO/__init__.py +0 -0
  194. arctrl/py/JsonIO/assay.py +113 -0
  195. arctrl/py/JsonIO/comment.py +80 -0
  196. arctrl/py/JsonIO/data.py +60 -0
  197. arctrl/py/JsonIO/data_file.py +58 -0
  198. arctrl/py/JsonIO/decode.py +9 -0
  199. arctrl/py/JsonIO/encode.py +1 -0
  200. arctrl/py/JsonIO/investigation.py +113 -0
  201. arctrl/py/JsonIO/ldobject.py +106 -0
  202. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  203. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  204. arctrl/py/JsonIO/person.py +82 -0
  205. arctrl/py/JsonIO/publication.py +82 -0
  206. arctrl/py/JsonIO/study.py +114 -0
  207. arctrl/py/ROCrate/Generic/__init__.py +0 -0
  208. arctrl/py/ROCrate/Generic/comment.py +131 -0
  209. arctrl/py/ROCrate/Generic/dataset.py +817 -0
  210. arctrl/py/ROCrate/Generic/defined_term.py +131 -0
  211. arctrl/py/ROCrate/Generic/file.py +237 -0
  212. arctrl/py/ROCrate/Generic/lab_process.py +324 -0
  213. arctrl/py/ROCrate/Generic/lab_protocol.py +338 -0
  214. arctrl/py/ROCrate/Generic/organization.py +83 -0
  215. arctrl/py/ROCrate/Generic/person.py +484 -0
  216. arctrl/py/ROCrate/Generic/postal_address.py +195 -0
  217. arctrl/py/ROCrate/Generic/property_value.py +696 -0
  218. arctrl/py/ROCrate/Generic/sample.py +202 -0
  219. arctrl/py/ROCrate/Generic/scholarly_article.py +229 -0
  220. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  221. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  222. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  223. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  224. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  225. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  226. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  227. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  228. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  229. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  230. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  231. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  232. arctrl/py/ROCrate/__init__.py +0 -0
  233. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  234. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  235. arctrl/py/ROCrate/helper.py +8 -0
  236. arctrl/py/ROCrate/ldcontext.py +362 -0
  237. arctrl/py/ROCrate/ldobject.py +1247 -0
  238. arctrl/py/ROCrate/rocrate_context.py +51 -0
  239. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  240. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +193 -0
  241. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  242. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +210 -0
  243. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  244. arctrl/py/Spreadsheet/DataMapTable/__init__.py +0 -0
  245. arctrl/py/Spreadsheet/DataMapTable/data_map_column.py +114 -0
  246. arctrl/py/Spreadsheet/DataMapTable/data_map_header.py +618 -0
  247. arctrl/py/Spreadsheet/DataMapTable/data_map_table.py +119 -0
  248. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  249. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  250. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  251. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  252. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  253. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  254. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  255. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  256. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  257. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  258. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  259. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  260. arctrl/py/Spreadsheet/Metadata/sparse_table.py +508 -0
  261. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  262. arctrl/py/Spreadsheet/Metadata/workflow.py +151 -0
  263. arctrl/py/Spreadsheet/__init__.py +0 -0
  264. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  265. arctrl/py/Spreadsheet/arc_investigation.py +418 -0
  266. arctrl/py/Spreadsheet/arc_run.py +190 -0
  267. arctrl/py/Spreadsheet/arc_study.py +144 -0
  268. arctrl/py/Spreadsheet/arc_workflow.py +176 -0
  269. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  270. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  271. arctrl/py/Spreadsheet/data_map.py +44 -0
  272. arctrl/py/Spreadsheet/template.py +460 -0
  273. arctrl/py/ValidationPackages/__init__.py +0 -0
  274. arctrl/py/ValidationPackages/validation_package.py +82 -0
  275. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  276. arctrl/py/WebRequest/__init__.py +0 -0
  277. arctrl/py/WebRequest/web_request.py +9 -0
  278. arctrl/py/WebRequest/web_request_py.py +135 -0
  279. arctrl/py/Yaml/__init__.py +0 -0
  280. arctrl/py/Yaml/decode.py +1 -0
  281. arctrl/py/Yaml/encode.py +10 -0
  282. arctrl/py/Yaml/validation_package.py +77 -0
  283. arctrl/py/Yaml/validation_packages_config.py +86 -0
  284. arctrl/py/__init__.py +0 -0
  285. arctrl/py/arc.py +1400 -0
  286. arctrl/py/column_index.py +280 -0
  287. arctrl/py/conversion.py +2184 -0
  288. arctrl/py/cross_async.py +76 -0
  289. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  290. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  291. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  292. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  293. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  294. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  295. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  296. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  297. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  298. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  299. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  300. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  301. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  302. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  303. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  304. arctrl/py/fable_modules/fable_library/char.py +237 -0
  305. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  306. arctrl/py/fable_modules/fable_library/date.py +779 -0
  307. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  308. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  309. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  310. arctrl/py/fable_modules/fable_library/double.py +87 -0
  311. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  312. arctrl/py/fable_modules/fable_library/event.py +206 -0
  313. arctrl/py/fable_modules/fable_library/file.py +107 -0
  314. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  315. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  316. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  317. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  318. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  319. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  320. arctrl/py/fable_modules/fable_library/long.py +240 -0
  321. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  322. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  323. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  324. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  325. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  326. arctrl/py/fable_modules/fable_library/native.py +45 -0
  327. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  328. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  329. arctrl/py/fable_modules/fable_library/option.py +128 -0
  330. arctrl/py/fable_modules/fable_library/path.py +62 -0
  331. arctrl/py/fable_modules/fable_library/range.py +117 -0
  332. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  333. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  334. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  335. arctrl/py/fable_modules/fable_library/result.py +212 -0
  336. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  337. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  338. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  339. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  340. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  341. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  342. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  343. arctrl/py/fable_modules/fable_library/task.py +116 -0
  344. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  345. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  346. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  347. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  348. arctrl/py/fable_modules/fable_library/types.py +401 -0
  349. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  350. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  351. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  352. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  353. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  354. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  355. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  356. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  357. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  358. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  359. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  360. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  361. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  362. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  363. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  364. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  365. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  366. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  367. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  368. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  369. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  370. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  371. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  372. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  373. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  374. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  375. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  376. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  377. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  378. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +338 -0
  379. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +469 -0
  380. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  381. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  382. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  383. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  384. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  385. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  386. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  387. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  388. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  389. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +464 -0
  390. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  391. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  392. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  393. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  394. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  395. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  396. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +57 -0
  397. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  398. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  399. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +217 -0
  400. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  401. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +47 -0
  402. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +186 -0
  403. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +90 -0
  404. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +78 -0
  405. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  406. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  407. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +393 -0
  408. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +127 -0
  409. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  410. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  411. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +218 -0
  412. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  413. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  414. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +180 -0
  415. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +600 -0
  416. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +330 -0
  417. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  418. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +63 -0
  419. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  420. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  421. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  422. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +53 -0
  423. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +40 -0
  424. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +54 -0
  425. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  426. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  427. arctrl/py/fable_modules/thoth_json_core/decode.py +1588 -0
  428. arctrl/py/fable_modules/thoth_json_core/encode.py +261 -0
  429. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  430. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  431. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  432. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  433. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  434. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  435. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  436. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  437. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  438. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  439. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  440. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  441. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  442. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  443. arctrl/py/fable_modules/yamlicious/reader.py +665 -0
  444. arctrl/py/fable_modules/yamlicious/regex.py +21 -0
  445. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +256 -0
  446. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  447. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  448. arctrl/py/json.py +213 -0
  449. arctrl/py/rocrate_io.py +72 -0
  450. arctrl/py/template_web.py +23 -0
  451. arctrl/py/xlsx.py +148 -0
  452. arctrl/rocrate.py +21 -0
  453. arctrl-3.0.0a3.dist-info/LICENSE +21 -0
  454. arctrl-3.0.0a3.dist-info/METADATA +119 -0
  455. arctrl-3.0.0a3.dist-info/RECORD +456 -0
  456. arctrl-3.0.0a3.dist-info/WHEEL +4 -0
File without changes
@@ -0,0 +1,393 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import (Any, TypeVar)
4
+ from ...fable_modules.fable_library.array_ import (map as map_2, iterate_indexed, fold, fill)
5
+ from ...fable_modules.fable_library.list import (FSharpList, empty as empty_1)
6
+ from ...fable_modules.fable_library.map import (of_seq, empty as empty_2)
7
+ from ...fable_modules.fable_library.map_util import (get_item_from_dict, add_to_dict)
8
+ from ...fable_modules.fable_library.mutable_map import Dictionary
9
+ from ...fable_modules.fable_library.option import default_arg
10
+ from ...fable_modules.fable_library.range import range_big_int
11
+ from ...fable_modules.fable_library.result import FSharpResult_2
12
+ from ...fable_modules.fable_library.seq import (to_list, delay, append, singleton, map, empty, collect, to_array)
13
+ from ...fable_modules.fable_library.types import Array
14
+ from ...fable_modules.fable_library.util import (IEnumerable_1, compare_arrays, equal_arrays, array_hash, equals, to_enumerable, int32_to_string, ignore)
15
+ from ...fable_modules.thoth_json_core.decode import (object, list_1 as list_1_1, IOptionalGetter, map_0027, tuple2 as tuple2_1, int_1, IRequiredGetter, string, IGetters, array as array_2, Helpers_prependPath)
16
+ from ...fable_modules.thoth_json_core.encode import (list_1, map as map_1, tuple2)
17
+ from ...fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1, Decoder_1, ErrorReason_1, IDecoderHelpers_1)
18
+ from ...Core.ontology_annotation import OntologyAnnotation
19
+ from ...Core.Table.arc_table import ArcTable
20
+ from ...Core.Table.composite_cell import CompositeCell
21
+ from ...Core.Table.composite_header import CompositeHeader
22
+ from ..string_table import (encode_string, decode_string)
23
+ from .cell_table import (encode_cell, decode_cell)
24
+ from .composite_cell import (encoder as encoder_2, decoder as decoder_2)
25
+ from .composite_header import (encoder as encoder_1, decoder as decoder_1)
26
+
27
+ __A_ = TypeVar("__A_")
28
+
29
+ _VALUE_ = TypeVar("_VALUE_")
30
+
31
+ _VALUE = TypeVar("_VALUE")
32
+
33
+ def encoder(table: ArcTable) -> IEncodable:
34
+ def _arrow2778(__unit: None=None, table: Any=table) -> IEnumerable_1[tuple[str, IEncodable]]:
35
+ def _arrow2767(__unit: None=None) -> IEncodable:
36
+ value_4: str = table.Name
37
+ class ObjectExpr2766(IEncodable):
38
+ def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
39
+ return helpers_2.encode_string(value_4)
40
+
41
+ return ObjectExpr2766()
42
+
43
+ def _arrow2777(__unit: None=None) -> IEnumerable_1[tuple[str, IEncodable]]:
44
+ def _arrow2768(__unit: None=None) -> IEnumerable_1[IEncodable]:
45
+ return map(encoder_1, table.Headers)
46
+
47
+ def _arrow2776(__unit: None=None) -> IEnumerable_1[tuple[str, IEncodable]]:
48
+ def key_encoder(tupled_arg: tuple[int, int]) -> IEncodable:
49
+ def _arrow2770(value: int, tupled_arg: Any=tupled_arg) -> IEncodable:
50
+ class ObjectExpr2769(IEncodable):
51
+ def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
52
+ return helpers.encode_signed_integral_number(value)
53
+
54
+ return ObjectExpr2769()
55
+
56
+ def _arrow2772(value_2: int, tupled_arg: Any=tupled_arg) -> IEncodable:
57
+ class ObjectExpr2771(IEncodable):
58
+ def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
59
+ return helpers_1.encode_signed_integral_number(value_2)
60
+
61
+ return ObjectExpr2771()
62
+
63
+ return tuple2(_arrow2770, _arrow2772, tupled_arg[0], tupled_arg[1])
64
+
65
+ def _arrow2774(__unit: None=None) -> IEnumerable_1[tuple[tuple[int, int], CompositeCell]]:
66
+ def _arrow2773(match_value: Any) -> IEnumerable_1[tuple[tuple[int, int], CompositeCell]]:
67
+ active_pattern_result: tuple[tuple[int, int], CompositeCell] = match_value
68
+ return singleton((active_pattern_result[0], active_pattern_result[1]))
69
+
70
+ return collect(_arrow2773, table.Values)
71
+
72
+ class ObjectExpr2775:
73
+ @property
74
+ def Compare(self) -> Callable[[tuple[int, int], tuple[int, int]], int]:
75
+ return compare_arrays
76
+
77
+ return singleton(("values", map_1(key_encoder, encoder_2, of_seq(to_list(delay(_arrow2774)), ObjectExpr2775())))) if (len(table.Values) != 0) else empty()
78
+
79
+ return append(singleton(("header", list_1(to_list(delay(_arrow2768))))) if (len(table.Headers) != 0) else empty(), delay(_arrow2776))
80
+
81
+ return append(singleton(("name", _arrow2767())), delay(_arrow2777))
82
+
83
+ values: IEnumerable_1[tuple[str, IEncodable]] = to_list(delay(_arrow2778))
84
+ class ObjectExpr2779(IEncodable):
85
+ def Encode(self, helpers_3: IEncoderHelpers_1[Any], table: Any=table) -> Any:
86
+ def mapping(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
87
+ return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers_3))
88
+
89
+ arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
90
+ return helpers_3.encode_object(arg)
91
+
92
+ return ObjectExpr2779()
93
+
94
+
95
+ def _arrow2785(get: IGetters) -> ArcTable:
96
+ def _arrow2780(__unit: None=None) -> FSharpList[CompositeHeader] | None:
97
+ arg_1: Decoder_1[FSharpList[CompositeHeader]] = list_1_1(decoder_1)
98
+ object_arg: IOptionalGetter = get.Optional
99
+ return object_arg.Field("header", arg_1)
100
+
101
+ decoded_header: Array[CompositeHeader] = list(default_arg(_arrow2780(), empty_1()))
102
+ def _arrow2781(__unit: None=None) -> Any | None:
103
+ arg_3: Decoder_1[Any] = map_0027(tuple2_1(int_1, int_1), decoder_2)
104
+ object_arg_1: IOptionalGetter = get.Optional
105
+ return object_arg_1.Field("values", arg_3)
106
+
107
+ class ObjectExpr2782:
108
+ @property
109
+ def Compare(self) -> Callable[[tuple[int, int], tuple[int, int]], int]:
110
+ return compare_arrays
111
+
112
+ class ObjectExpr2783:
113
+ @property
114
+ def Equals(self) -> Callable[[tuple[int, int], tuple[int, int]], bool]:
115
+ return equal_arrays
116
+
117
+ @property
118
+ def GetHashCode(self) -> Callable[[tuple[int, int]], int]:
119
+ return array_hash
120
+
121
+ decoded_values: Any = Dictionary(default_arg(_arrow2781(), empty_2(ObjectExpr2782())), ObjectExpr2783())
122
+ def _arrow2784(__unit: None=None) -> str:
123
+ object_arg_2: IRequiredGetter = get.Required
124
+ return object_arg_2.Field("name", string)
125
+
126
+ return ArcTable.create(_arrow2784(), decoded_header, decoded_values)
127
+
128
+
129
+ decoder: Decoder_1[ArcTable] = object(_arrow2785)
130
+
131
+ def encoder_compressed_column(column_index: int, row_count: int, cell_table: Any, table: ArcTable) -> IEncodable:
132
+ if True if table.Headers[column_index].IsIOType else (row_count < 100):
133
+ def _arrow2787(__unit: None=None, column_index: Any=column_index, row_count: Any=row_count, cell_table: Any=cell_table, table: Any=table) -> IEnumerable_1[IEncodable]:
134
+ def _arrow2786(r: int) -> IEncodable:
135
+ return encode_cell(cell_table, get_item_from_dict(table.Values, (column_index, r)))
136
+
137
+ return map(_arrow2786, range_big_int(0, 1, row_count - 1))
138
+
139
+ values: Array[IEncodable] = to_array(delay(_arrow2787))
140
+ class ObjectExpr2788(IEncodable):
141
+ def Encode(self, helpers: IEncoderHelpers_1[Any], column_index: Any=column_index, row_count: Any=row_count, cell_table: Any=cell_table, table: Any=table) -> Any:
142
+ def mapping(v: IEncodable) -> __A_:
143
+ return v.Encode(helpers)
144
+
145
+ arg: Array[__A_] = map_2(mapping, values, None)
146
+ return helpers.encode_array(arg)
147
+
148
+ return ObjectExpr2788()
149
+
150
+ else:
151
+ current: CompositeCell = get_item_from_dict(table.Values, (column_index, 0))
152
+ from_: int = 0
153
+ def _arrow2804(__unit: None=None, column_index: Any=column_index, row_count: Any=row_count, cell_table: Any=cell_table, table: Any=table) -> IEnumerable_1[IEncodable]:
154
+ def _arrow2796(i: int) -> IEnumerable_1[IEncodable]:
155
+ next_1: CompositeCell = get_item_from_dict(table.Values, (column_index, i))
156
+ def _arrow2794(__unit: None=None) -> IEncodable:
157
+ def _arrow2790(__unit: None=None) -> IEncodable:
158
+ value: int = from_ or 0
159
+ class ObjectExpr2789(IEncodable):
160
+ def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
161
+ return helpers_1.encode_signed_integral_number(value)
162
+
163
+ return ObjectExpr2789()
164
+
165
+ def _arrow2792(__unit: None=None) -> IEncodable:
166
+ value_1: int = (i - 1) or 0
167
+ class ObjectExpr2791(IEncodable):
168
+ def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
169
+ return helpers_2.encode_signed_integral_number(value_1)
170
+
171
+ return ObjectExpr2791()
172
+
173
+ values_1: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("f", _arrow2790()), ("t", _arrow2792()), ("v", encode_cell(cell_table, current))])
174
+ class ObjectExpr2793(IEncodable):
175
+ def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
176
+ def mapping_1(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
177
+ return (tupled_arg[0], tupled_arg[1].Encode(helpers_3))
178
+
179
+ arg_1: IEnumerable_1[tuple[str, __A_]] = map(mapping_1, values_1)
180
+ return helpers_3.encode_object(arg_1)
181
+
182
+ return ObjectExpr2793()
183
+
184
+ def _arrow2795(__unit: None=None) -> IEnumerable_1[IEncodable]:
185
+ nonlocal current, from_
186
+ current = next_1
187
+ from_ = i or 0
188
+ return empty()
189
+
190
+ return append(singleton(_arrow2794()), delay(_arrow2795)) if (not equals(next_1, current)) else empty()
191
+
192
+ def _arrow2803(__unit: None=None) -> IEnumerable_1[IEncodable]:
193
+ def _arrow2802(__unit: None=None) -> IEncodable:
194
+ def _arrow2798(__unit: None=None) -> IEncodable:
195
+ value_2: int = from_ or 0
196
+ class ObjectExpr2797(IEncodable):
197
+ def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
198
+ return helpers_4.encode_signed_integral_number(value_2)
199
+
200
+ return ObjectExpr2797()
201
+
202
+ def _arrow2800(__unit: None=None) -> IEncodable:
203
+ value_3: int = (row_count - 1) or 0
204
+ class ObjectExpr2799(IEncodable):
205
+ def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
206
+ return helpers_5.encode_signed_integral_number(value_3)
207
+
208
+ return ObjectExpr2799()
209
+
210
+ values_2: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("f", _arrow2798()), ("t", _arrow2800()), ("v", encode_cell(cell_table, current))])
211
+ class ObjectExpr2801(IEncodable):
212
+ def Encode(self, helpers_6: IEncoderHelpers_1[Any]) -> Any:
213
+ def mapping_2(tupled_arg_1: tuple[str, IEncodable]) -> tuple[str, __A_]:
214
+ return (tupled_arg_1[0], tupled_arg_1[1].Encode(helpers_6))
215
+
216
+ arg_2: IEnumerable_1[tuple[str, __A_]] = map(mapping_2, values_2)
217
+ return helpers_6.encode_object(arg_2)
218
+
219
+ return ObjectExpr2801()
220
+
221
+ return singleton(_arrow2802())
222
+
223
+ return append(collect(_arrow2796, range_big_int(1, 1, row_count - 1)), delay(_arrow2803))
224
+
225
+ values_3: Array[IEncodable] = to_array(delay(_arrow2804))
226
+ class ObjectExpr2805(IEncodable):
227
+ def Encode(self, helpers_7: IEncoderHelpers_1[Any], column_index: Any=column_index, row_count: Any=row_count, cell_table: Any=cell_table, table: Any=table) -> Any:
228
+ def mapping_3(v_3: IEncodable) -> __A_:
229
+ return v_3.Encode(helpers_7)
230
+
231
+ arg_3: Array[__A_] = map_2(mapping_3, values_3, None)
232
+ return helpers_7.encode_array(arg_3)
233
+
234
+ return ObjectExpr2805()
235
+
236
+
237
+
238
+ def decoder_compressed_column(cell_table: Array[CompositeCell], table: ArcTable, column_index: int) -> Decoder_1[None]:
239
+ class ObjectExpr2807(Decoder_1[None]):
240
+ def Decode(self, helper: IDecoderHelpers_1[Any], column: Any, cell_table: Any=cell_table, table: Any=table, column_index: Any=column_index) -> FSharpResult_2[None, tuple[str, ErrorReason_1[__A_]]]:
241
+ match_value: FSharpResult_2[Array[CompositeCell], tuple[str, ErrorReason_1[__A_]]] = array_2(decode_cell(cell_table)).Decode(helper, column)
242
+ if match_value.tag == 1:
243
+ def _arrow2806(get: IGetters) -> None:
244
+ from_: int
245
+ object_arg: IRequiredGetter = get.Required
246
+ from_ = object_arg.Field("f", int_1)
247
+ to_: int
248
+ object_arg_1: IRequiredGetter = get.Required
249
+ to_ = object_arg_1.Field("t", int_1)
250
+ value: CompositeCell
251
+ arg_5: Decoder_1[CompositeCell] = decode_cell(cell_table)
252
+ object_arg_2: IRequiredGetter = get.Required
253
+ value = object_arg_2.Field("v", arg_5)
254
+ for i in range(from_, to_ + 1, 1):
255
+ add_to_dict(table.Values, (column_index, i), value)
256
+
257
+ range_decoder: Decoder_1[None] = object(_arrow2806)
258
+ match_value_1: FSharpResult_2[Array[None], tuple[str, ErrorReason_1[__A_]]] = array_2(range_decoder).Decode(helper, column)
259
+ return FSharpResult_2(1, match_value_1.fields[0]) if (match_value_1.tag == 1) else FSharpResult_2(0, None)
260
+
261
+ else:
262
+ def action(r: int, cell: CompositeCell) -> None:
263
+ add_to_dict(table.Values, (column_index, r), cell)
264
+
265
+ iterate_indexed(action, match_value.fields[0])
266
+ return FSharpResult_2(0, None)
267
+
268
+
269
+ return ObjectExpr2807()
270
+
271
+
272
+ def arrayi(decoderi: Callable[[int], Decoder_1[_VALUE]]) -> Decoder_1[Array[Any]]:
273
+ class ObjectExpr2814(Decoder_1[Array[_VALUE_]]):
274
+ def Decode(self, helpers: IDecoderHelpers_1[Any], value: Any, decoderi: Any=decoderi) -> FSharpResult_2[Array[_VALUE_], tuple[str, ErrorReason_1[__A_]]]:
275
+ if helpers.is_array(value):
276
+ i: int = -1
277
+ tokens: Array[__A_] = helpers.as_array(value)
278
+ def folder(acc: FSharpResult_2[Array[_VALUE_], tuple[str, ErrorReason_1[__A_]]], value_1: __A_) -> FSharpResult_2[Array[_VALUE_], tuple[str, ErrorReason_1[__A_]]]:
279
+ nonlocal i
280
+ i = (i + 1) or 0
281
+ if acc.tag == 0:
282
+ acc_1: Array[_VALUE_] = acc.fields[0]
283
+ match_value: FSharpResult_2[_VALUE_, tuple[str, ErrorReason_1[__A_]]] = decoderi(i).Decode(helpers, value_1)
284
+ if match_value.tag == 0:
285
+ acc_1[i] = match_value.fields[0]
286
+ return FSharpResult_2(0, acc_1)
287
+
288
+ else:
289
+ def _arrow2813(__unit: None=None, acc: Any=acc, value_1: Any=value_1) -> tuple[str, ErrorReason_1[__A_]]:
290
+ tupled_arg: tuple[str, ErrorReason_1[__A_]] = match_value.fields[0]
291
+ return Helpers_prependPath((".[" + int32_to_string(i)) + "]", tupled_arg[0], tupled_arg[1])
292
+
293
+ return FSharpResult_2(1, _arrow2813())
294
+
295
+
296
+ else:
297
+ return acc
298
+
299
+
300
+ return fold(folder, FSharpResult_2(0, fill([0] * len(tokens), 0, len(tokens), None)), tokens)
301
+
302
+ else:
303
+ return FSharpResult_2(1, ("", ErrorReason_1(0, "an array", value)))
304
+
305
+
306
+ return ObjectExpr2814()
307
+
308
+
309
+ def encoder_compressed(string_table: Any, oa_table: Any, cell_table: Any, table: ArcTable) -> IEncodable:
310
+ def _arrow2825(__unit: None=None, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, table: Any=table) -> IEnumerable_1[tuple[str, IEncodable]]:
311
+ def _arrow2824(__unit: None=None) -> IEnumerable_1[tuple[str, IEncodable]]:
312
+ def _arrow2817(__unit: None=None) -> IEnumerable_1[IEncodable]:
313
+ return map(encoder_1, table.Headers)
314
+
315
+ def _arrow2823(__unit: None=None) -> IEnumerable_1[tuple[str, IEncodable]]:
316
+ if len(table.Values) != 0:
317
+ row_count: int = table.RowCount or 0
318
+ def _arrow2821(__unit: None=None) -> IEnumerable_1[IEncodable]:
319
+ def _arrow2820(c: int) -> IEncodable:
320
+ return encoder_compressed_column(c, row_count, cell_table, table)
321
+
322
+ return map(_arrow2820, range_big_int(0, 1, table.ColumnCount - 1))
323
+
324
+ columns: Array[IEncodable] = to_array(delay(_arrow2821))
325
+ class ObjectExpr2822(IEncodable):
326
+ def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
327
+ def mapping(v: IEncodable) -> __A_:
328
+ return v.Encode(helpers)
329
+
330
+ arg: Array[__A_] = map_2(mapping, columns, None)
331
+ return helpers.encode_array(arg)
332
+
333
+ return singleton(("c", ObjectExpr2822()))
334
+
335
+ else:
336
+ return empty()
337
+
338
+
339
+ return append(singleton(("h", list_1(to_list(delay(_arrow2817))))) if (len(table.Headers) != 0) else empty(), delay(_arrow2823))
340
+
341
+ return append(singleton(("n", encode_string(string_table, table.Name))), delay(_arrow2824))
342
+
343
+ values_1: IEnumerable_1[tuple[str, IEncodable]] = to_list(delay(_arrow2825))
344
+ class ObjectExpr2827(IEncodable):
345
+ def Encode(self, helpers_1: IEncoderHelpers_1[Any], string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table, table: Any=table) -> Any:
346
+ def mapping_1(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
347
+ return (tupled_arg[0], tupled_arg[1].Encode(helpers_1))
348
+
349
+ arg_1: IEnumerable_1[tuple[str, __A_]] = map(mapping_1, values_1)
350
+ return helpers_1.encode_object(arg_1)
351
+
352
+ return ObjectExpr2827()
353
+
354
+
355
+ def decoder_compressed(string_table: Array[str], oa_table: Array[OntologyAnnotation], cell_table: Array[CompositeCell]) -> Decoder_1[ArcTable]:
356
+ def _arrow2840(get: IGetters, string_table: Any=string_table, oa_table: Any=oa_table, cell_table: Any=cell_table) -> ArcTable:
357
+ def _arrow2828(__unit: None=None) -> FSharpList[CompositeHeader] | None:
358
+ arg_1: Decoder_1[FSharpList[CompositeHeader]] = list_1_1(decoder_1)
359
+ object_arg: IOptionalGetter = get.Optional
360
+ return object_arg.Field("h", arg_1)
361
+
362
+ decoded_header: Array[CompositeHeader] = list(default_arg(_arrow2828(), empty_1()))
363
+ def _arrow2832(__unit: None=None) -> str:
364
+ arg_3: Decoder_1[str] = decode_string(string_table)
365
+ object_arg_1: IRequiredGetter = get.Required
366
+ return object_arg_1.Field("n", arg_3)
367
+
368
+ class ObjectExpr2834:
369
+ @property
370
+ def Equals(self) -> Callable[[tuple[int, int], tuple[int, int]], bool]:
371
+ return equal_arrays
372
+
373
+ @property
374
+ def GetHashCode(self) -> Callable[[tuple[int, int]], int]:
375
+ return array_hash
376
+
377
+ table: ArcTable = ArcTable.create(_arrow2832(), decoded_header, Dictionary([], ObjectExpr2834()))
378
+ def _arrow2839(__unit: None=None) -> Array[None] | None:
379
+ def _arrow2838(column_index: int) -> Decoder_1[None]:
380
+ return decoder_compressed_column(cell_table, table, column_index)
381
+
382
+ arg_5: Decoder_1[Array[None]] = arrayi(_arrow2838)
383
+ object_arg_2: IOptionalGetter = get.Optional
384
+ return object_arg_2.Field("c", arg_5)
385
+
386
+ ignore(_arrow2839())
387
+ return table
388
+
389
+ return object(_arrow2840)
390
+
391
+
392
+ __all__ = ["encoder", "decoder", "encoder_compressed_column", "decoder_compressed_column", "arrayi", "encoder_compressed", "decoder_compressed"]
393
+
@@ -0,0 +1,83 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import (Any, TypeVar)
4
+ from ...fable_modules.fable_library.array_ import map as map_1
5
+ from ...fable_modules.fable_library.map_util import add_to_dict
6
+ from ...fable_modules.fable_library.seq import (to_array, map, sort_by)
7
+ from ...fable_modules.fable_library.types import Array
8
+ from ...fable_modules.fable_library.util import compare_primitives
9
+ from ...fable_modules.thoth_json_core.decode import (array as array_2, object, int_1, IGetters)
10
+ from ...fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1, Decoder_1)
11
+ from ...Core.Helper.collections_ import Dictionary_tryFind
12
+ from ...Core.ontology_annotation import OntologyAnnotation
13
+ from ...Core.Table.composite_cell import CompositeCell
14
+ from .composite_cell import (encoder_compressed, decoder_compressed)
15
+
16
+ __A_ = TypeVar("__A_")
17
+
18
+ def array_from_map(otm: Any) -> Array[CompositeCell]:
19
+ def mapping(kv_1: Any, otm: Any=otm) -> CompositeCell:
20
+ return kv_1[0]
21
+
22
+ def projection(kv: Any, otm: Any=otm) -> int:
23
+ return kv[1]
24
+
25
+ class ObjectExpr2755:
26
+ @property
27
+ def Compare(self) -> Callable[[int, int], int]:
28
+ return compare_primitives
29
+
30
+ return to_array(map(mapping, sort_by(projection, otm, ObjectExpr2755())))
31
+
32
+
33
+ def encoder(string_table: Any, oa_table: Any, ot: Array[CompositeCell]) -> IEncodable:
34
+ def mapping(cc: CompositeCell, string_table: Any=string_table, oa_table: Any=oa_table, ot: Any=ot) -> IEncodable:
35
+ return encoder_compressed(string_table, oa_table, cc)
36
+
37
+ values: Array[IEncodable] = map_1(mapping, ot, None)
38
+ class ObjectExpr2756(IEncodable):
39
+ def Encode(self, helpers: IEncoderHelpers_1[Any], string_table: Any=string_table, oa_table: Any=oa_table, ot: Any=ot) -> Any:
40
+ def mapping_1(v: IEncodable) -> __A_:
41
+ return v.Encode(helpers)
42
+
43
+ arg: Array[__A_] = map_1(mapping_1, values, None)
44
+ return helpers.encode_array(arg)
45
+
46
+ return ObjectExpr2756()
47
+
48
+
49
+ def decoder(string_table: Array[str], oa_table: Array[OntologyAnnotation]) -> Decoder_1[Array[CompositeCell]]:
50
+ return array_2(decoder_compressed(string_table, oa_table))
51
+
52
+
53
+ def encode_cell(otm: Any, cc: CompositeCell) -> IEncodable:
54
+ match_value: int | None = Dictionary_tryFind(cc, otm)
55
+ if match_value is None:
56
+ i_1: int = len(otm) or 0
57
+ add_to_dict(otm, cc, i_1)
58
+ class ObjectExpr2757(IEncodable):
59
+ def Encode(self, helpers_1: IEncoderHelpers_1[Any], otm: Any=otm, cc: Any=cc) -> Any:
60
+ return helpers_1.encode_signed_integral_number(i_1)
61
+
62
+ return ObjectExpr2757()
63
+
64
+ else:
65
+ i: int = match_value or 0
66
+ class ObjectExpr2758(IEncodable):
67
+ def Encode(self, helpers: IEncoderHelpers_1[Any], otm: Any=otm, cc: Any=cc) -> Any:
68
+ return helpers.encode_signed_integral_number(i)
69
+
70
+ return ObjectExpr2758()
71
+
72
+
73
+
74
+ def decode_cell(ot: Array[CompositeCell]) -> Decoder_1[CompositeCell]:
75
+ def _arrow2759(get: IGetters, ot: Any=ot) -> CompositeCell:
76
+ i: int = get.Required.Raw(int_1) or 0
77
+ return ot[i].Copy()
78
+
79
+ return object(_arrow2759)
80
+
81
+
82
+ __all__ = ["array_from_map", "encoder", "decoder", "encode_cell", "decode_cell"]
83
+
@@ -0,0 +1,136 @@
1
+ from __future__ import annotations
2
+ from collections.abc import Callable
3
+ from typing import (Any, TypeVar)
4
+ from ...fable_modules.fable_library.list import (singleton, of_array, FSharpList)
5
+ from ...fable_modules.fable_library.seq import map
6
+ from ...fable_modules.fable_library.string_ import (to_fail, printf)
7
+ from ...fable_modules.fable_library.types import Array
8
+ from ...fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
9
+ from ...fable_modules.thoth_json_core.decode import (object, IRequiredGetter, string, index, IGetters)
10
+ from ...fable_modules.thoth_json_core.encode import list_1
11
+ from ...fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1, Decoder_1)
12
+ from ...Core.data import Data
13
+ from ...Core.ontology_annotation import OntologyAnnotation
14
+ from ...Core.Table.composite_cell import CompositeCell
15
+ from ..data import (encoder as encoder_1, decoder as decoder_5, compressed_encoder, compressed_decoder)
16
+ from ..ontology_annotation import (OntologyAnnotation_encoder, OntologyAnnotation_decoder)
17
+ from ..string_table import (encode_string, decode_string)
18
+ from .oatable import (encode_oa, decode_oa)
19
+
20
+ __A_ = TypeVar("__A_")
21
+
22
+ def encoder(cc: CompositeCell) -> IEncodable:
23
+ def oa_to_json_string(oa: OntologyAnnotation, cc: Any=cc) -> IEncodable:
24
+ return OntologyAnnotation_encoder(oa)
25
+
26
+ class ObjectExpr2738(IEncodable):
27
+ def Encode(self, helpers_1: IEncoderHelpers_1[Any], cc: Any=cc) -> Any:
28
+ return helpers_1.encode_string(cc.fields[0])
29
+
30
+ class ObjectExpr2739(IEncodable):
31
+ def Encode(self, helpers: IEncoderHelpers_1[Any], cc: Any=cc) -> Any:
32
+ return helpers.encode_string(cc.fields[0])
33
+
34
+ pattern_input: tuple[str, FSharpList[IEncodable]] = (("Term", singleton(oa_to_json_string(cc.fields[0])))) if (cc.tag == 0) else ((("Unitized", of_array([ObjectExpr2738(), oa_to_json_string(cc.fields[1])]))) if (cc.tag == 2) else ((("Data", singleton(encoder_1(cc.fields[0])))) if (cc.tag == 3) else (("FreeText", singleton(ObjectExpr2739())))))
35
+ class ObjectExpr2740(IEncodable):
36
+ def Encode(self, helpers_2: IEncoderHelpers_1[Any], cc: Any=cc) -> Any:
37
+ return helpers_2.encode_string(pattern_input[0])
38
+
39
+ values_1: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("celltype", ObjectExpr2740()), ("values", list_1(pattern_input[1]))])
40
+ class ObjectExpr2741(IEncodable):
41
+ def Encode(self, helpers_3: IEncoderHelpers_1[Any], cc: Any=cc) -> Any:
42
+ def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
43
+ return (tupled_arg[0], tupled_arg[1].Encode(helpers_3))
44
+
45
+ arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values_1)
46
+ return helpers_3.encode_object(arg)
47
+
48
+ return ObjectExpr2741()
49
+
50
+
51
+ def _arrow2747(get: IGetters) -> CompositeCell:
52
+ match_value: str
53
+ object_arg: IRequiredGetter = get.Required
54
+ match_value = object_arg.Field("celltype", string)
55
+ def _arrow2742(__unit: None=None) -> str:
56
+ arg_3: Decoder_1[str] = index(0, string)
57
+ object_arg_1: IRequiredGetter = get.Required
58
+ return object_arg_1.Field("values", arg_3)
59
+
60
+ def _arrow2743(__unit: None=None) -> OntologyAnnotation:
61
+ arg_5: Decoder_1[OntologyAnnotation] = index(0, OntologyAnnotation_decoder)
62
+ object_arg_2: IRequiredGetter = get.Required
63
+ return object_arg_2.Field("values", arg_5)
64
+
65
+ def _arrow2744(__unit: None=None) -> str:
66
+ arg_7: Decoder_1[str] = index(0, string)
67
+ object_arg_3: IRequiredGetter = get.Required
68
+ return object_arg_3.Field("values", arg_7)
69
+
70
+ def _arrow2745(__unit: None=None) -> OntologyAnnotation:
71
+ arg_9: Decoder_1[OntologyAnnotation] = index(1, OntologyAnnotation_decoder)
72
+ object_arg_4: IRequiredGetter = get.Required
73
+ return object_arg_4.Field("values", arg_9)
74
+
75
+ def _arrow2746(__unit: None=None) -> Data:
76
+ arg_11: Decoder_1[Data] = index(0, decoder_5)
77
+ object_arg_5: IRequiredGetter = get.Required
78
+ return object_arg_5.Field("values", arg_11)
79
+
80
+ return CompositeCell(1, _arrow2742()) if (match_value == "FreeText") else (CompositeCell(0, _arrow2743()) if (match_value == "Term") else (CompositeCell(2, _arrow2744(), _arrow2745()) if (match_value == "Unitized") else (CompositeCell(3, _arrow2746()) if (match_value == "Data") else to_fail(printf("Error reading CompositeCell from json string: %A"))(match_value))))
81
+
82
+
83
+ decoder: Decoder_1[CompositeCell] = object(_arrow2747)
84
+
85
+ def encoder_compressed(string_table: Any, oa_table: Any, cc: CompositeCell) -> IEncodable:
86
+ pattern_input: tuple[str, FSharpList[IEncodable]] = (("Term", singleton(encode_oa(oa_table, cc.fields[0])))) if (cc.tag == 0) else ((("Unitized", of_array([encode_string(string_table, cc.fields[0]), encode_oa(oa_table, cc.fields[1])]))) if (cc.tag == 2) else ((("Data", singleton(compressed_encoder(string_table, cc.fields[0])))) if (cc.tag == 3) else (("FreeText", singleton(encode_string(string_table, cc.fields[0]))))))
87
+ values_1: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("t", encode_string(string_table, pattern_input[0])), ("v", list_1(pattern_input[1]))])
88
+ class ObjectExpr2748(IEncodable):
89
+ def Encode(self, helpers: IEncoderHelpers_1[Any], string_table: Any=string_table, oa_table: Any=oa_table, cc: Any=cc) -> Any:
90
+ def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
91
+ return (tupled_arg[0], tupled_arg[1].Encode(helpers))
92
+
93
+ arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values_1)
94
+ return helpers.encode_object(arg)
95
+
96
+ return ObjectExpr2748()
97
+
98
+
99
+ def decoder_compressed(string_table: Array[str], oa_table: Array[OntologyAnnotation]) -> Decoder_1[CompositeCell]:
100
+ def _arrow2754(get: IGetters, string_table: Any=string_table, oa_table: Any=oa_table) -> CompositeCell:
101
+ match_value: str
102
+ arg_1: Decoder_1[str] = decode_string(string_table)
103
+ object_arg: IRequiredGetter = get.Required
104
+ match_value = object_arg.Field("t", arg_1)
105
+ def _arrow2749(__unit: None=None) -> str:
106
+ arg_3: Decoder_1[str] = index(0, decode_string(string_table))
107
+ object_arg_1: IRequiredGetter = get.Required
108
+ return object_arg_1.Field("v", arg_3)
109
+
110
+ def _arrow2750(__unit: None=None) -> OntologyAnnotation:
111
+ arg_5: Decoder_1[OntologyAnnotation] = index(0, decode_oa(oa_table))
112
+ object_arg_2: IRequiredGetter = get.Required
113
+ return object_arg_2.Field("v", arg_5)
114
+
115
+ def _arrow2751(__unit: None=None) -> str:
116
+ arg_7: Decoder_1[str] = index(0, decode_string(string_table))
117
+ object_arg_3: IRequiredGetter = get.Required
118
+ return object_arg_3.Field("v", arg_7)
119
+
120
+ def _arrow2752(__unit: None=None) -> OntologyAnnotation:
121
+ arg_9: Decoder_1[OntologyAnnotation] = index(1, decode_oa(oa_table))
122
+ object_arg_4: IRequiredGetter = get.Required
123
+ return object_arg_4.Field("v", arg_9)
124
+
125
+ def _arrow2753(__unit: None=None) -> Data:
126
+ arg_11: Decoder_1[Data] = index(0, compressed_decoder(string_table))
127
+ object_arg_5: IRequiredGetter = get.Required
128
+ return object_arg_5.Field("v", arg_11)
129
+
130
+ return CompositeCell(1, _arrow2749()) if (match_value == "FreeText") else (CompositeCell(0, _arrow2750()) if (match_value == "Term") else (CompositeCell(2, _arrow2751(), _arrow2752()) if (match_value == "Unitized") else (CompositeCell(3, _arrow2753()) if (match_value == "Data") else to_fail(printf("Error reading CompositeCell from json string: %A"))(match_value))))
131
+
132
+ return object(_arrow2754)
133
+
134
+
135
+ __all__ = ["encoder", "decoder", "encoder_compressed", "decoder_compressed"]
136
+