arctrl 3.0.0a3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +18 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwltypes.py +150 -0
- arctrl/py/CWL/decode.py +973 -0
- arctrl/py/CWL/encode.py +1 -0
- arctrl/py/CWL/inputs.py +88 -0
- arctrl/py/CWL/outputs.py +85 -0
- arctrl/py/CWL/requirements.py +77 -0
- arctrl/py/CWL/tool_description.py +103 -0
- arctrl/py/CWL/workflow_description.py +104 -0
- arctrl/py/CWL/workflow_steps.py +113 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +60 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +125 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +125 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +372 -0
- arctrl/py/Contract/git.py +118 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +344 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +438 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +248 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1264 -0
- arctrl/py/Core/Table/arc_table_aux.py +575 -0
- arctrl/py/Core/Table/arc_tables.py +591 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5064 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1313 -0
- arctrl/py/Core/data.py +245 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/data_map.py +225 -0
- arctrl/py/Core/identifier_setters.py +31 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +299 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +5 -0
- arctrl/py/FileSystem/default_gitignore.py +5 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +426 -0
- arctrl/py/FileSystem/path.py +64 -0
- arctrl/py/Json/DataMap/__init__.py +0 -0
- arctrl/py/Json/DataMap/data_context.py +101 -0
- arctrl/py/Json/DataMap/data_map.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +79 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +79 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +133 -0
- arctrl/py/Json/ROCrate/ldgraph.py +111 -0
- arctrl/py/Json/ROCrate/ldnode.py +290 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +393 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +155 -0
- arctrl/py/Json/encode.py +92 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/string_table.py +76 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/JsonIO/DataMap/__init__.py +0 -0
- arctrl/py/JsonIO/DataMap/data_map.py +53 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +121 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +85 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +113 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/ROCrate/Generic/__init__.py +0 -0
- arctrl/py/ROCrate/Generic/comment.py +131 -0
- arctrl/py/ROCrate/Generic/dataset.py +817 -0
- arctrl/py/ROCrate/Generic/defined_term.py +131 -0
- arctrl/py/ROCrate/Generic/file.py +237 -0
- arctrl/py/ROCrate/Generic/lab_process.py +324 -0
- arctrl/py/ROCrate/Generic/lab_protocol.py +338 -0
- arctrl/py/ROCrate/Generic/organization.py +83 -0
- arctrl/py/ROCrate/Generic/person.py +484 -0
- arctrl/py/ROCrate/Generic/postal_address.py +195 -0
- arctrl/py/ROCrate/Generic/property_value.py +696 -0
- arctrl/py/ROCrate/Generic/sample.py +202 -0
- arctrl/py/ROCrate/Generic/scholarly_article.py +229 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +362 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +193 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +210 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DataMapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_column.py +114 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_header.py +618 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_table.py +119 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +508 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +151 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +418 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +176 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/data_map.py +44 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1400 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +2184 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +338 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +469 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +464 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +57 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +217 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +186 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +90 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +78 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +393 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +127 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +218 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +180 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +600 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +330 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +63 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +53 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +40 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1588 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +261 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +665 -0
- arctrl/py/fable_modules/yamlicious/regex.py +21 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +256 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +213 -0
- arctrl/py/rocrate_io.py +72 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +148 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0a3.dist-info/LICENSE +21 -0
- arctrl-3.0.0a3.dist-info/METADATA +119 -0
- arctrl-3.0.0a3.dist-info/RECORD +456 -0
- arctrl-3.0.0a3.dist-info/WHEEL +4 -0
|
@@ -0,0 +1,153 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from dataclasses import dataclass
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ..fable_modules.fable_library.option import default_arg
|
|
5
|
+
from ..fable_modules.fable_library.reflection import (TypeInfo, union_type, string_type, array_type, record_type, obj_type, option_type)
|
|
6
|
+
from ..fable_modules.fable_library.types import (Array, Union, Record)
|
|
7
|
+
|
|
8
|
+
def _expr3346() -> TypeInfo:
|
|
9
|
+
return union_type("ARCtrl.Contract.DTOType", [], DTOType, lambda: [[], [], [], [], [], [], [], [], [], [], [], []])
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
class DTOType(Union):
|
|
13
|
+
def __init__(self, tag: int, *fields: Any) -> None:
|
|
14
|
+
super().__init__()
|
|
15
|
+
self.tag: int = tag or 0
|
|
16
|
+
self.fields: Array[Any] = list(fields)
|
|
17
|
+
|
|
18
|
+
@staticmethod
|
|
19
|
+
def cases() -> list[str]:
|
|
20
|
+
return ["ISA_Assay", "ISA_Study", "ISA_Workflow", "ISA_Run", "ISA_Investigation", "ISA_Datamap", "JSON", "Markdown", "CWL", "YAML", "PlainText", "Cli"]
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
DTOType_reflection = _expr3346
|
|
24
|
+
|
|
25
|
+
def _expr3347() -> TypeInfo:
|
|
26
|
+
return record_type("ARCtrl.Contract.CLITool", [], CLITool, lambda: [("Name", string_type), ("Arguments", array_type(string_type))])
|
|
27
|
+
|
|
28
|
+
|
|
29
|
+
@dataclass(eq = False, repr = False, slots = True)
|
|
30
|
+
class CLITool(Record):
|
|
31
|
+
Name: str
|
|
32
|
+
Arguments: Array[str]
|
|
33
|
+
@staticmethod
|
|
34
|
+
def create(name: str, arguments: Array[str]) -> CLITool:
|
|
35
|
+
return CLITool(name, arguments)
|
|
36
|
+
|
|
37
|
+
|
|
38
|
+
CLITool_reflection = _expr3347
|
|
39
|
+
|
|
40
|
+
def _expr3348() -> TypeInfo:
|
|
41
|
+
return union_type("ARCtrl.Contract.DTO", [], DTO, lambda: [[("Item", obj_type)], [("Item", string_type)], [("Item", CLITool_reflection())]])
|
|
42
|
+
|
|
43
|
+
|
|
44
|
+
class DTO(Union):
|
|
45
|
+
def __init__(self, tag: int, *fields: Any) -> None:
|
|
46
|
+
super().__init__()
|
|
47
|
+
self.tag: int = tag or 0
|
|
48
|
+
self.fields: Array[Any] = list(fields)
|
|
49
|
+
|
|
50
|
+
@staticmethod
|
|
51
|
+
def cases() -> list[str]:
|
|
52
|
+
return ["Spreadsheet", "Text", "CLITool"]
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
DTO_reflection = _expr3348
|
|
56
|
+
|
|
57
|
+
def DTO__get_isSpreadsheet(this: DTO) -> bool:
|
|
58
|
+
if this.tag == 0:
|
|
59
|
+
return True
|
|
60
|
+
|
|
61
|
+
else:
|
|
62
|
+
return False
|
|
63
|
+
|
|
64
|
+
|
|
65
|
+
|
|
66
|
+
def DTO__get_isText(this: DTO) -> bool:
|
|
67
|
+
if this.tag == 1:
|
|
68
|
+
return True
|
|
69
|
+
|
|
70
|
+
else:
|
|
71
|
+
return False
|
|
72
|
+
|
|
73
|
+
|
|
74
|
+
|
|
75
|
+
def DTO__get_isCLITool(this: DTO) -> bool:
|
|
76
|
+
if this.tag == 2:
|
|
77
|
+
return True
|
|
78
|
+
|
|
79
|
+
else:
|
|
80
|
+
return False
|
|
81
|
+
|
|
82
|
+
|
|
83
|
+
|
|
84
|
+
def DTO__AsSpreadsheet(this: DTO) -> Any:
|
|
85
|
+
if this.tag == 0:
|
|
86
|
+
return this.fields[0]
|
|
87
|
+
|
|
88
|
+
else:
|
|
89
|
+
raise Exception("Not a spreadsheet")
|
|
90
|
+
|
|
91
|
+
|
|
92
|
+
|
|
93
|
+
def DTO__AsText(this: DTO) -> str:
|
|
94
|
+
if this.tag == 1:
|
|
95
|
+
return this.fields[0]
|
|
96
|
+
|
|
97
|
+
else:
|
|
98
|
+
raise Exception("Not text")
|
|
99
|
+
|
|
100
|
+
|
|
101
|
+
|
|
102
|
+
def DTO__AsCLITool(this: DTO) -> CLITool:
|
|
103
|
+
if this.tag == 2:
|
|
104
|
+
return this.fields[0]
|
|
105
|
+
|
|
106
|
+
else:
|
|
107
|
+
raise Exception("Not a CLI tool")
|
|
108
|
+
|
|
109
|
+
|
|
110
|
+
|
|
111
|
+
def _expr3349() -> TypeInfo:
|
|
112
|
+
return record_type("ARCtrl.Contract.Contract", [], Contract, lambda: [("Operation", string_type), ("Path", string_type), ("DTOType", option_type(DTOType_reflection())), ("DTO", option_type(DTO_reflection()))])
|
|
113
|
+
|
|
114
|
+
|
|
115
|
+
@dataclass(eq = False, repr = False, slots = True)
|
|
116
|
+
class Contract(Record):
|
|
117
|
+
Operation: str
|
|
118
|
+
Path: str
|
|
119
|
+
DTOType: DTOType | None
|
|
120
|
+
DTO: DTO | None
|
|
121
|
+
@staticmethod
|
|
122
|
+
def create(op: str, path: str, dto_type: DTOType | None=None, dto: DTO | None=None) -> Contract:
|
|
123
|
+
return Contract(op, path, dto_type, dto)
|
|
124
|
+
|
|
125
|
+
@staticmethod
|
|
126
|
+
def create_create(path: str, dto_type: DTOType, dto: DTO | None=None) -> Contract:
|
|
127
|
+
return Contract("CREATE", path, dto_type, dto)
|
|
128
|
+
|
|
129
|
+
@staticmethod
|
|
130
|
+
def create_update(path: str, dto_type: DTOType, dto: DTO) -> Contract:
|
|
131
|
+
return Contract("UPDATE", path, dto_type, dto)
|
|
132
|
+
|
|
133
|
+
@staticmethod
|
|
134
|
+
def create_delete(path: str) -> Contract:
|
|
135
|
+
return Contract("DELETE", path, None, None)
|
|
136
|
+
|
|
137
|
+
@staticmethod
|
|
138
|
+
def create_read(path: str, dto_type: DTOType) -> Contract:
|
|
139
|
+
return Contract("READ", path, dto_type, None)
|
|
140
|
+
|
|
141
|
+
@staticmethod
|
|
142
|
+
def create_execute(dto: CLITool, path: str | None=None) -> Contract:
|
|
143
|
+
return Contract("EXECUTE", default_arg(path, ""), DTOType(11), DTO(2, dto))
|
|
144
|
+
|
|
145
|
+
@staticmethod
|
|
146
|
+
def create_rename(old_path: str, new_path: str) -> Contract:
|
|
147
|
+
return Contract("RENAME", old_path, None, DTO(1, new_path))
|
|
148
|
+
|
|
149
|
+
|
|
150
|
+
Contract_reflection = _expr3349
|
|
151
|
+
|
|
152
|
+
__all__ = ["DTOType_reflection", "CLITool_reflection", "DTO_reflection", "DTO__get_isSpreadsheet", "DTO__get_isText", "DTO__get_isCLITool", "DTO__AsSpreadsheet", "DTO__AsText", "DTO__AsCLITool", "Contract_reflection"]
|
|
153
|
+
|
|
@@ -0,0 +1,372 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ..fable_modules.fable_library.array_ import equals_with
|
|
5
|
+
from ..fable_modules.fable_library.types import Array
|
|
6
|
+
from ..fable_modules.fable_library.util import safe_hash
|
|
7
|
+
from ..Core.data_map import (DataMap, DataMap__set_StaticHash_Z524259A4)
|
|
8
|
+
from ..Core.Helper.identifier import (Assay_datamapFileNameFromIdentifier, Study_datamapFileNameFromIdentifier, Workflow_datamapFileNameFromIdentifier, Run_datamapFileNameFromIdentifier)
|
|
9
|
+
from ..FileSystem.path import combine_many
|
|
10
|
+
from ..Spreadsheet.data_map import (to_fs_workbook, from_fs_workbook)
|
|
11
|
+
from .contract import (Contract, DTOType, DTO)
|
|
12
|
+
|
|
13
|
+
def _007CDatamapPath_007C__007C(input: Array[str]) -> str | None:
|
|
14
|
+
(pattern_matching_result,) = (None,)
|
|
15
|
+
def _arrow3432(x: str, y: str, input: Any=input) -> bool:
|
|
16
|
+
return x == y
|
|
17
|
+
|
|
18
|
+
if (len(input) == 3) if (not equals_with(_arrow3432, input, None)) else False:
|
|
19
|
+
if input[0] == "assays":
|
|
20
|
+
if input[2] == "isa.datamap.xlsx":
|
|
21
|
+
pattern_matching_result = 0
|
|
22
|
+
|
|
23
|
+
else:
|
|
24
|
+
pattern_matching_result = 2
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
elif input[0] == "studies":
|
|
28
|
+
if input[2] == "isa.datamap.xlsx":
|
|
29
|
+
pattern_matching_result = 1
|
|
30
|
+
|
|
31
|
+
else:
|
|
32
|
+
pattern_matching_result = 2
|
|
33
|
+
|
|
34
|
+
|
|
35
|
+
else:
|
|
36
|
+
pattern_matching_result = 2
|
|
37
|
+
|
|
38
|
+
|
|
39
|
+
else:
|
|
40
|
+
pattern_matching_result = 2
|
|
41
|
+
|
|
42
|
+
if pattern_matching_result == 0:
|
|
43
|
+
any_assay_name: str = input[1]
|
|
44
|
+
return combine_many(input)
|
|
45
|
+
|
|
46
|
+
elif pattern_matching_result == 1:
|
|
47
|
+
any_study_name: str = input[1]
|
|
48
|
+
return combine_many(input)
|
|
49
|
+
|
|
50
|
+
elif pattern_matching_result == 2:
|
|
51
|
+
return None
|
|
52
|
+
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
def ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5(this: DataMap, assay_identifier: str) -> Contract:
|
|
56
|
+
path: str = Assay_datamapFileNameFromIdentifier(assay_identifier)
|
|
57
|
+
return Contract.create_create(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
58
|
+
|
|
59
|
+
|
|
60
|
+
def ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5(this: DataMap, assay_identifier: str) -> Contract:
|
|
61
|
+
path: str = Assay_datamapFileNameFromIdentifier(assay_identifier)
|
|
62
|
+
return Contract.create_update(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
63
|
+
|
|
64
|
+
|
|
65
|
+
def ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5(this: DataMap, assay_identifier: str) -> Contract:
|
|
66
|
+
path: str = Assay_datamapFileNameFromIdentifier(assay_identifier)
|
|
67
|
+
return Contract.create_delete(path)
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
def ARCtrl_DataMap__DataMap_toDeleteContractForAssay_Static_Z721C83C5(assay_identifier: str) -> Callable[[DataMap], Contract]:
|
|
71
|
+
def _arrow3433(data_map: DataMap, assay_identifier: Any=assay_identifier) -> Contract:
|
|
72
|
+
return ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5(data_map, assay_identifier)
|
|
73
|
+
|
|
74
|
+
return _arrow3433
|
|
75
|
+
|
|
76
|
+
|
|
77
|
+
def ARCtrl_DataMap__DataMap_toUpdateContractForAssay_Static_Z721C83C5(assay_identifier: str) -> Callable[[DataMap], Contract]:
|
|
78
|
+
def _arrow3434(data_map: DataMap, assay_identifier: Any=assay_identifier) -> Contract:
|
|
79
|
+
return ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5(data_map, assay_identifier)
|
|
80
|
+
|
|
81
|
+
return _arrow3434
|
|
82
|
+
|
|
83
|
+
|
|
84
|
+
def ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assay_identifier: str, c: Contract) -> DataMap | None:
|
|
85
|
+
path: str = Assay_datamapFileNameFromIdentifier(assay_identifier)
|
|
86
|
+
(pattern_matching_result, fsworkbook_1, p_1) = (None, None, None)
|
|
87
|
+
if c.Operation == "READ":
|
|
88
|
+
if c.DTOType is not None:
|
|
89
|
+
if c.DTOType.tag == 5:
|
|
90
|
+
if c.DTO is not None:
|
|
91
|
+
if c.DTO.tag == 0:
|
|
92
|
+
def _arrow3435(__unit: None=None, assay_identifier: Any=assay_identifier, c: Any=c) -> bool:
|
|
93
|
+
fsworkbook: Any = c.DTO.fields[0]
|
|
94
|
+
return c.Path == path
|
|
95
|
+
|
|
96
|
+
if _arrow3435():
|
|
97
|
+
pattern_matching_result = 0
|
|
98
|
+
fsworkbook_1 = c.DTO.fields[0]
|
|
99
|
+
p_1 = c.Path
|
|
100
|
+
|
|
101
|
+
else:
|
|
102
|
+
pattern_matching_result = 1
|
|
103
|
+
|
|
104
|
+
|
|
105
|
+
else:
|
|
106
|
+
pattern_matching_result = 1
|
|
107
|
+
|
|
108
|
+
|
|
109
|
+
else:
|
|
110
|
+
pattern_matching_result = 1
|
|
111
|
+
|
|
112
|
+
|
|
113
|
+
else:
|
|
114
|
+
pattern_matching_result = 1
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
else:
|
|
118
|
+
pattern_matching_result = 1
|
|
119
|
+
|
|
120
|
+
|
|
121
|
+
else:
|
|
122
|
+
pattern_matching_result = 1
|
|
123
|
+
|
|
124
|
+
if pattern_matching_result == 0:
|
|
125
|
+
dm: DataMap = from_fs_workbook(fsworkbook_1)
|
|
126
|
+
DataMap__set_StaticHash_Z524259A4(dm, safe_hash(dm))
|
|
127
|
+
return dm
|
|
128
|
+
|
|
129
|
+
elif pattern_matching_result == 1:
|
|
130
|
+
return None
|
|
131
|
+
|
|
132
|
+
|
|
133
|
+
|
|
134
|
+
def ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5(this: DataMap, study_identifier: str) -> Contract:
|
|
135
|
+
path: str = Study_datamapFileNameFromIdentifier(study_identifier)
|
|
136
|
+
return Contract.create_create(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
137
|
+
|
|
138
|
+
|
|
139
|
+
def ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5(this: DataMap, study_identifier: str) -> Contract:
|
|
140
|
+
path: str = Study_datamapFileNameFromIdentifier(study_identifier)
|
|
141
|
+
return Contract.create_update(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
142
|
+
|
|
143
|
+
|
|
144
|
+
def ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5(this: DataMap, study_identifier: str) -> Contract:
|
|
145
|
+
path: str = Study_datamapFileNameFromIdentifier(study_identifier)
|
|
146
|
+
return Contract.create_delete(path)
|
|
147
|
+
|
|
148
|
+
|
|
149
|
+
def ARCtrl_DataMap__DataMap_toDeleteContractForStudy_Static_Z721C83C5(study_identifier: str) -> Callable[[DataMap], Contract]:
|
|
150
|
+
def _arrow3436(data_map: DataMap, study_identifier: Any=study_identifier) -> Contract:
|
|
151
|
+
return ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5(data_map, study_identifier)
|
|
152
|
+
|
|
153
|
+
return _arrow3436
|
|
154
|
+
|
|
155
|
+
|
|
156
|
+
def ARCtrl_DataMap__DataMap_toUpdateContractForStudy_Static_Z721C83C5(study_identifier: str) -> Callable[[DataMap], Contract]:
|
|
157
|
+
def _arrow3437(data_map: DataMap, study_identifier: Any=study_identifier) -> Contract:
|
|
158
|
+
return ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5(data_map, study_identifier)
|
|
159
|
+
|
|
160
|
+
return _arrow3437
|
|
161
|
+
|
|
162
|
+
|
|
163
|
+
def ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(study_identifier: str, c: Contract) -> DataMap | None:
|
|
164
|
+
path: str = Study_datamapFileNameFromIdentifier(study_identifier)
|
|
165
|
+
(pattern_matching_result, fsworkbook_1, p_1) = (None, None, None)
|
|
166
|
+
if c.Operation == "READ":
|
|
167
|
+
if c.DTOType is not None:
|
|
168
|
+
if c.DTOType.tag == 5:
|
|
169
|
+
if c.DTO is not None:
|
|
170
|
+
if c.DTO.tag == 0:
|
|
171
|
+
def _arrow3438(__unit: None=None, study_identifier: Any=study_identifier, c: Any=c) -> bool:
|
|
172
|
+
fsworkbook: Any = c.DTO.fields[0]
|
|
173
|
+
return c.Path == path
|
|
174
|
+
|
|
175
|
+
if _arrow3438():
|
|
176
|
+
pattern_matching_result = 0
|
|
177
|
+
fsworkbook_1 = c.DTO.fields[0]
|
|
178
|
+
p_1 = c.Path
|
|
179
|
+
|
|
180
|
+
else:
|
|
181
|
+
pattern_matching_result = 1
|
|
182
|
+
|
|
183
|
+
|
|
184
|
+
else:
|
|
185
|
+
pattern_matching_result = 1
|
|
186
|
+
|
|
187
|
+
|
|
188
|
+
else:
|
|
189
|
+
pattern_matching_result = 1
|
|
190
|
+
|
|
191
|
+
|
|
192
|
+
else:
|
|
193
|
+
pattern_matching_result = 1
|
|
194
|
+
|
|
195
|
+
|
|
196
|
+
else:
|
|
197
|
+
pattern_matching_result = 1
|
|
198
|
+
|
|
199
|
+
|
|
200
|
+
else:
|
|
201
|
+
pattern_matching_result = 1
|
|
202
|
+
|
|
203
|
+
if pattern_matching_result == 0:
|
|
204
|
+
dm: DataMap = from_fs_workbook(fsworkbook_1)
|
|
205
|
+
DataMap__set_StaticHash_Z524259A4(dm, safe_hash(dm))
|
|
206
|
+
return dm
|
|
207
|
+
|
|
208
|
+
elif pattern_matching_result == 1:
|
|
209
|
+
return None
|
|
210
|
+
|
|
211
|
+
|
|
212
|
+
|
|
213
|
+
def ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5(this: DataMap, workflow_identifier: str) -> Contract:
|
|
214
|
+
path: str = Workflow_datamapFileNameFromIdentifier(workflow_identifier)
|
|
215
|
+
return Contract.create_create(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
216
|
+
|
|
217
|
+
|
|
218
|
+
def ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(this: DataMap, workflow_identifier: str) -> Contract:
|
|
219
|
+
path: str = Workflow_datamapFileNameFromIdentifier(workflow_identifier)
|
|
220
|
+
return Contract.create_update(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
221
|
+
|
|
222
|
+
|
|
223
|
+
def ARCtrl_DataMap__DataMap_ToDeleteContractForWorkflow_Z721C83C5(this: DataMap, workflow_identifier: str) -> Contract:
|
|
224
|
+
path: str = Workflow_datamapFileNameFromIdentifier(workflow_identifier)
|
|
225
|
+
return Contract.create_delete(path)
|
|
226
|
+
|
|
227
|
+
|
|
228
|
+
def ARCtrl_DataMap__DataMap_toDeleteContractForWorkflow_Static_Z721C83C5(workflow_identifier: str) -> Callable[[DataMap], Contract]:
|
|
229
|
+
def _arrow3439(data_map: DataMap, workflow_identifier: Any=workflow_identifier) -> Contract:
|
|
230
|
+
return ARCtrl_DataMap__DataMap_ToDeleteContractForWorkflow_Z721C83C5(data_map, workflow_identifier)
|
|
231
|
+
|
|
232
|
+
return _arrow3439
|
|
233
|
+
|
|
234
|
+
|
|
235
|
+
def ARCtrl_DataMap__DataMap_toUpdateContractForWorkflow_Static_Z721C83C5(workflow_identifier: str) -> Callable[[DataMap], Contract]:
|
|
236
|
+
def _arrow3440(data_map: DataMap, workflow_identifier: Any=workflow_identifier) -> Contract:
|
|
237
|
+
return ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(data_map, workflow_identifier)
|
|
238
|
+
|
|
239
|
+
return _arrow3440
|
|
240
|
+
|
|
241
|
+
|
|
242
|
+
def ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static(workflow_identifier: str, c: Contract) -> DataMap | None:
|
|
243
|
+
path: str = Workflow_datamapFileNameFromIdentifier(workflow_identifier)
|
|
244
|
+
(pattern_matching_result, fsworkbook_1, p_1) = (None, None, None)
|
|
245
|
+
if c.Operation == "READ":
|
|
246
|
+
if c.DTOType is not None:
|
|
247
|
+
if c.DTOType.tag == 5:
|
|
248
|
+
if c.DTO is not None:
|
|
249
|
+
if c.DTO.tag == 0:
|
|
250
|
+
def _arrow3441(__unit: None=None, workflow_identifier: Any=workflow_identifier, c: Any=c) -> bool:
|
|
251
|
+
fsworkbook: Any = c.DTO.fields[0]
|
|
252
|
+
return c.Path == path
|
|
253
|
+
|
|
254
|
+
if _arrow3441():
|
|
255
|
+
pattern_matching_result = 0
|
|
256
|
+
fsworkbook_1 = c.DTO.fields[0]
|
|
257
|
+
p_1 = c.Path
|
|
258
|
+
|
|
259
|
+
else:
|
|
260
|
+
pattern_matching_result = 1
|
|
261
|
+
|
|
262
|
+
|
|
263
|
+
else:
|
|
264
|
+
pattern_matching_result = 1
|
|
265
|
+
|
|
266
|
+
|
|
267
|
+
else:
|
|
268
|
+
pattern_matching_result = 1
|
|
269
|
+
|
|
270
|
+
|
|
271
|
+
else:
|
|
272
|
+
pattern_matching_result = 1
|
|
273
|
+
|
|
274
|
+
|
|
275
|
+
else:
|
|
276
|
+
pattern_matching_result = 1
|
|
277
|
+
|
|
278
|
+
|
|
279
|
+
else:
|
|
280
|
+
pattern_matching_result = 1
|
|
281
|
+
|
|
282
|
+
if pattern_matching_result == 0:
|
|
283
|
+
dm: DataMap = from_fs_workbook(fsworkbook_1)
|
|
284
|
+
DataMap__set_StaticHash_Z524259A4(dm, safe_hash(dm))
|
|
285
|
+
return dm
|
|
286
|
+
|
|
287
|
+
elif pattern_matching_result == 1:
|
|
288
|
+
return None
|
|
289
|
+
|
|
290
|
+
|
|
291
|
+
|
|
292
|
+
def ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5(this: DataMap, run_identifier: str) -> Contract:
|
|
293
|
+
path: str = Run_datamapFileNameFromIdentifier(run_identifier)
|
|
294
|
+
return Contract.create_create(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
295
|
+
|
|
296
|
+
|
|
297
|
+
def ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5(this: DataMap, run_identifier: str) -> Contract:
|
|
298
|
+
path: str = Run_datamapFileNameFromIdentifier(run_identifier)
|
|
299
|
+
return Contract.create_update(path, DTOType(5), DTO(0, to_fs_workbook(this)))
|
|
300
|
+
|
|
301
|
+
|
|
302
|
+
def ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5(this: DataMap, run_identifier: str) -> Contract:
|
|
303
|
+
path: str = Run_datamapFileNameFromIdentifier(run_identifier)
|
|
304
|
+
return Contract.create_delete(path)
|
|
305
|
+
|
|
306
|
+
|
|
307
|
+
def ARCtrl_DataMap__DataMap_toDeleteContractForRun_Static_Z721C83C5(run_identifier: str) -> Callable[[DataMap], Contract]:
|
|
308
|
+
def _arrow3442(data_map: DataMap, run_identifier: Any=run_identifier) -> Contract:
|
|
309
|
+
return ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5(data_map, run_identifier)
|
|
310
|
+
|
|
311
|
+
return _arrow3442
|
|
312
|
+
|
|
313
|
+
|
|
314
|
+
def ARCtrl_DataMap__DataMap_toUpdateContractForRun_Static_Z721C83C5(run_identifier: str) -> Callable[[DataMap], Contract]:
|
|
315
|
+
def _arrow3443(data_map: DataMap, run_identifier: Any=run_identifier) -> Contract:
|
|
316
|
+
return ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5(data_map, run_identifier)
|
|
317
|
+
|
|
318
|
+
return _arrow3443
|
|
319
|
+
|
|
320
|
+
|
|
321
|
+
def ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(run_identifier: str, c: Contract) -> DataMap | None:
|
|
322
|
+
path: str = Run_datamapFileNameFromIdentifier(run_identifier)
|
|
323
|
+
(pattern_matching_result, fsworkbook_1, p_1) = (None, None, None)
|
|
324
|
+
if c.Operation == "READ":
|
|
325
|
+
if c.DTOType is not None:
|
|
326
|
+
if c.DTOType.tag == 5:
|
|
327
|
+
if c.DTO is not None:
|
|
328
|
+
if c.DTO.tag == 0:
|
|
329
|
+
def _arrow3444(__unit: None=None, run_identifier: Any=run_identifier, c: Any=c) -> bool:
|
|
330
|
+
fsworkbook: Any = c.DTO.fields[0]
|
|
331
|
+
return c.Path == path
|
|
332
|
+
|
|
333
|
+
if _arrow3444():
|
|
334
|
+
pattern_matching_result = 0
|
|
335
|
+
fsworkbook_1 = c.DTO.fields[0]
|
|
336
|
+
p_1 = c.Path
|
|
337
|
+
|
|
338
|
+
else:
|
|
339
|
+
pattern_matching_result = 1
|
|
340
|
+
|
|
341
|
+
|
|
342
|
+
else:
|
|
343
|
+
pattern_matching_result = 1
|
|
344
|
+
|
|
345
|
+
|
|
346
|
+
else:
|
|
347
|
+
pattern_matching_result = 1
|
|
348
|
+
|
|
349
|
+
|
|
350
|
+
else:
|
|
351
|
+
pattern_matching_result = 1
|
|
352
|
+
|
|
353
|
+
|
|
354
|
+
else:
|
|
355
|
+
pattern_matching_result = 1
|
|
356
|
+
|
|
357
|
+
|
|
358
|
+
else:
|
|
359
|
+
pattern_matching_result = 1
|
|
360
|
+
|
|
361
|
+
if pattern_matching_result == 0:
|
|
362
|
+
dm: DataMap = from_fs_workbook(fsworkbook_1)
|
|
363
|
+
DataMap__set_StaticHash_Z524259A4(dm, safe_hash(dm))
|
|
364
|
+
return dm
|
|
365
|
+
|
|
366
|
+
elif pattern_matching_result == 1:
|
|
367
|
+
return None
|
|
368
|
+
|
|
369
|
+
|
|
370
|
+
|
|
371
|
+
__all__ = ["_007CDatamapPath_007C__007C", "ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5", "ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5", "ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5", "ARCtrl_DataMap__DataMap_toDeleteContractForAssay_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_toUpdateContractForAssay_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static", "ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5", "ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5", "ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5", "ARCtrl_DataMap__DataMap_toDeleteContractForStudy_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_toUpdateContractForStudy_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static", "ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5", "ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5", "ARCtrl_DataMap__DataMap_ToDeleteContractForWorkflow_Z721C83C5", "ARCtrl_DataMap__DataMap_toDeleteContractForWorkflow_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_toUpdateContractForWorkflow_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static", "ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5", "ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5", "ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5", "ARCtrl_DataMap__DataMap_toDeleteContractForRun_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_toUpdateContractForRun_Static_Z721C83C5", "ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static"]
|
|
372
|
+
|
|
@@ -0,0 +1,118 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from typing import Any
|
|
3
|
+
from ..fable_modules.fable_library.option import (default_arg, value)
|
|
4
|
+
from ..fable_modules.fable_library.reflection import (TypeInfo, class_type)
|
|
5
|
+
from ..fable_modules.fable_library.seq import (to_array, delay, append, singleton, empty)
|
|
6
|
+
from ..fable_modules.fable_library.string_ import replace
|
|
7
|
+
from ..fable_modules.fable_library.types import Array
|
|
8
|
+
from ..fable_modules.fable_library.util import IEnumerable_1
|
|
9
|
+
from ..FileSystem.default_gitattributes import dga
|
|
10
|
+
from ..FileSystem.default_gitignore import dgi
|
|
11
|
+
from .contract import (CLITool, Contract, DTOType, DTO)
|
|
12
|
+
|
|
13
|
+
def git_with_args(arguments: Array[str]) -> CLITool:
|
|
14
|
+
return CLITool.create("git", arguments)
|
|
15
|
+
|
|
16
|
+
|
|
17
|
+
def create_git_contract_at(path: str, arguments: Array[str]) -> Contract:
|
|
18
|
+
return Contract.create_execute(git_with_args(arguments), path)
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
def create_git_contract(arguments: Array[str]) -> Contract:
|
|
22
|
+
return Contract.create_execute(git_with_args(arguments))
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
gitignore_contract: Contract = Contract.create_create(".gitignore", DTOType(10), DTO(1, dgi))
|
|
26
|
+
|
|
27
|
+
gitattributes_contract: Contract = Contract.create_create(".gitattributes", DTOType(10), DTO(1, dga))
|
|
28
|
+
|
|
29
|
+
def _expr3466() -> TypeInfo:
|
|
30
|
+
return class_type("ARCtrl.Contract.Git.Init", None, Init)
|
|
31
|
+
|
|
32
|
+
|
|
33
|
+
class Init:
|
|
34
|
+
...
|
|
35
|
+
|
|
36
|
+
Init_reflection = _expr3466
|
|
37
|
+
|
|
38
|
+
def _expr3467() -> TypeInfo:
|
|
39
|
+
return class_type("ARCtrl.Contract.Git.Clone", None, Clone)
|
|
40
|
+
|
|
41
|
+
|
|
42
|
+
class Clone:
|
|
43
|
+
...
|
|
44
|
+
|
|
45
|
+
Clone_reflection = _expr3467
|
|
46
|
+
|
|
47
|
+
def Init_get_init(__unit: None=None) -> str:
|
|
48
|
+
return "init"
|
|
49
|
+
|
|
50
|
+
|
|
51
|
+
def Init_get_branchFlag(__unit: None=None) -> str:
|
|
52
|
+
return "-b"
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
def Init_get_remote(__unit: None=None) -> str:
|
|
56
|
+
return "remote"
|
|
57
|
+
|
|
58
|
+
|
|
59
|
+
def Init_get_add(__unit: None=None) -> str:
|
|
60
|
+
return "add"
|
|
61
|
+
|
|
62
|
+
|
|
63
|
+
def Init_get_origin(__unit: None=None) -> str:
|
|
64
|
+
return "origin"
|
|
65
|
+
|
|
66
|
+
|
|
67
|
+
def Init_createInitContract_6DFDD678(branch: str | None=None) -> Contract:
|
|
68
|
+
branch_1: str = default_arg(branch, "main")
|
|
69
|
+
return create_git_contract([Init_get_init(), Init_get_branchFlag(), branch_1])
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
def Init_createAddRemoteContract_Z721C83C5(remote_url: str) -> Contract:
|
|
73
|
+
return create_git_contract([Init_get_remote(), Init_get_add(), Init_get_origin(), remote_url])
|
|
74
|
+
|
|
75
|
+
|
|
76
|
+
def Clone_get_clone(__unit: None=None) -> str:
|
|
77
|
+
return "clone"
|
|
78
|
+
|
|
79
|
+
|
|
80
|
+
def Clone_get_branchFlag(__unit: None=None) -> str:
|
|
81
|
+
return "-b"
|
|
82
|
+
|
|
83
|
+
|
|
84
|
+
def Clone_get_noLFSConfig(__unit: None=None) -> str:
|
|
85
|
+
return "-c \"filter.lfs.smudge = git-lfs smudge --skip -- %f\" -c \"filter.lfs.process = git-lfs filter-process --skip\""
|
|
86
|
+
|
|
87
|
+
|
|
88
|
+
def Clone_formatRepoString(username: str, pass_: str, url: str) -> str:
|
|
89
|
+
return replace(url, "https://", "https://" + (((username + ":") + pass_) + "@"))
|
|
90
|
+
|
|
91
|
+
|
|
92
|
+
def Clone_createCloneContract_5000466F(remote_url: str, merge: bool | None=None, branch: str | None=None, token: tuple[str, str] | None=None, nolfs: bool | None=None) -> Contract:
|
|
93
|
+
nolfs_1: bool = default_arg(nolfs, False)
|
|
94
|
+
merge_1: bool = default_arg(merge, False)
|
|
95
|
+
remote_url_1: str = remote_url if (token is None) else Clone_formatRepoString(token[0], token[1], remote_url)
|
|
96
|
+
def _arrow3473(__unit: None=None, remote_url: Any=remote_url, merge: Any=merge, branch: Any=branch, token: Any=token, nolfs: Any=nolfs) -> IEnumerable_1[str]:
|
|
97
|
+
def _arrow3472(__unit: None=None) -> IEnumerable_1[str]:
|
|
98
|
+
def _arrow3471(__unit: None=None) -> IEnumerable_1[str]:
|
|
99
|
+
def _arrow3470(__unit: None=None) -> IEnumerable_1[str]:
|
|
100
|
+
def _arrow3469(__unit: None=None) -> IEnumerable_1[str]:
|
|
101
|
+
def _arrow3468(__unit: None=None) -> IEnumerable_1[str]:
|
|
102
|
+
return singleton(".") if merge_1 else empty()
|
|
103
|
+
|
|
104
|
+
return append(singleton(remote_url_1), delay(_arrow3468))
|
|
105
|
+
|
|
106
|
+
return append(singleton(value(branch)) if (branch is not None) else empty(), delay(_arrow3469))
|
|
107
|
+
|
|
108
|
+
return append(singleton(Clone_get_branchFlag()) if (branch is not None) else empty(), delay(_arrow3470))
|
|
109
|
+
|
|
110
|
+
return append(singleton(Clone_get_noLFSConfig()) if nolfs_1 else empty(), delay(_arrow3471))
|
|
111
|
+
|
|
112
|
+
return append(singleton(Clone_get_clone()), delay(_arrow3472))
|
|
113
|
+
|
|
114
|
+
return create_git_contract(to_array(delay(_arrow3473)))
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
__all__ = ["git_with_args", "create_git_contract_at", "create_git_contract", "gitignore_contract", "gitattributes_contract", "Init_reflection", "Clone_reflection", "Init_get_init", "Init_get_branchFlag", "Init_get_remote", "Init_get_add", "Init_get_origin", "Init_createInitContract_6DFDD678", "Init_createAddRemoteContract_Z721C83C5", "Clone_get_clone", "Clone_get_branchFlag", "Clone_get_noLFSConfig", "Clone_formatRepoString", "Clone_createCloneContract_5000466F"]
|
|
118
|
+
|