arctrl 3.0.0a3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +18 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwltypes.py +150 -0
- arctrl/py/CWL/decode.py +973 -0
- arctrl/py/CWL/encode.py +1 -0
- arctrl/py/CWL/inputs.py +88 -0
- arctrl/py/CWL/outputs.py +85 -0
- arctrl/py/CWL/requirements.py +77 -0
- arctrl/py/CWL/tool_description.py +103 -0
- arctrl/py/CWL/workflow_description.py +104 -0
- arctrl/py/CWL/workflow_steps.py +113 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +60 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +125 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +125 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +372 -0
- arctrl/py/Contract/git.py +118 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +344 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +438 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +248 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1264 -0
- arctrl/py/Core/Table/arc_table_aux.py +575 -0
- arctrl/py/Core/Table/arc_tables.py +591 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5064 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1313 -0
- arctrl/py/Core/data.py +245 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/data_map.py +225 -0
- arctrl/py/Core/identifier_setters.py +31 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +299 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +5 -0
- arctrl/py/FileSystem/default_gitignore.py +5 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +426 -0
- arctrl/py/FileSystem/path.py +64 -0
- arctrl/py/Json/DataMap/__init__.py +0 -0
- arctrl/py/Json/DataMap/data_context.py +101 -0
- arctrl/py/Json/DataMap/data_map.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +79 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +79 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +133 -0
- arctrl/py/Json/ROCrate/ldgraph.py +111 -0
- arctrl/py/Json/ROCrate/ldnode.py +290 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +393 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +155 -0
- arctrl/py/Json/encode.py +92 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/string_table.py +76 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/JsonIO/DataMap/__init__.py +0 -0
- arctrl/py/JsonIO/DataMap/data_map.py +53 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +121 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +85 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +113 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/ROCrate/Generic/__init__.py +0 -0
- arctrl/py/ROCrate/Generic/comment.py +131 -0
- arctrl/py/ROCrate/Generic/dataset.py +817 -0
- arctrl/py/ROCrate/Generic/defined_term.py +131 -0
- arctrl/py/ROCrate/Generic/file.py +237 -0
- arctrl/py/ROCrate/Generic/lab_process.py +324 -0
- arctrl/py/ROCrate/Generic/lab_protocol.py +338 -0
- arctrl/py/ROCrate/Generic/organization.py +83 -0
- arctrl/py/ROCrate/Generic/person.py +484 -0
- arctrl/py/ROCrate/Generic/postal_address.py +195 -0
- arctrl/py/ROCrate/Generic/property_value.py +696 -0
- arctrl/py/ROCrate/Generic/sample.py +202 -0
- arctrl/py/ROCrate/Generic/scholarly_article.py +229 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +362 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +193 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +210 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DataMapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_column.py +114 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_header.py +618 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_table.py +119 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +508 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +151 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +418 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +176 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/data_map.py +44 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1400 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +2184 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +338 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +469 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +464 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +57 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +217 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +186 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +90 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +78 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +393 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +127 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +218 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +180 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +600 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +330 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +63 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +53 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +40 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1588 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +261 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +665 -0
- arctrl/py/fable_modules/yamlicious/regex.py +21 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +256 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +213 -0
- arctrl/py/rocrate_io.py +72 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +148 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0a3.dist-info/LICENSE +21 -0
- arctrl-3.0.0a3.dist-info/METADATA +119 -0
- arctrl-3.0.0a3.dist-info/RECORD +456 -0
- arctrl-3.0.0a3.dist-info/WHEEL +4 -0
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from __future__ import annotations
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from typing import Any
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from ...fable_modules.fable_library.option import value
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from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
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from ..helper import clean
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from ..ldcontext import LDContext
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from ..ldobject import LDNode
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def _expr1441() -> TypeInfo:
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return class_type("ARCtrl.ROCrate.LDDefinedTerm", None, LDDefinedTerm)
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class LDDefinedTerm:
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@staticmethod
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def schema_type() -> str:
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return "http://schema.org/DefinedTerm"
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@staticmethod
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def term_code() -> str:
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return "http://schema.org/termCode"
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@staticmethod
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def name() -> str:
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return "http://schema.org/name"
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@staticmethod
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def try_get_term_code_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
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match_value: Any | None = dt.TryGetPropertyAsSingleton(LDDefinedTerm.term_code(), context)
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(pattern_matching_result, tc) = (None, None)
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if match_value is not None:
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if str(type(value(match_value))) == "<class \'str\'>":
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pattern_matching_result = 0
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tc = value(match_value)
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else:
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pattern_matching_result = 1
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else:
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if pattern_matching_result == 0:
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return tc
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elif pattern_matching_result == 1:
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return None
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@staticmethod
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def get_term_code_as_string(dt: LDNode, context: LDContext | None=None) -> str:
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match_value: Any | None = dt.TryGetPropertyAsSingleton(LDDefinedTerm.term_code(), context)
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if match_value is not None:
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if str(type(value(match_value))) == "<class \'str\'>":
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tc: str = value(match_value)
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return tc
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else:
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raise Exception(("Property of `termCode` of object with @id `" + dt.Id) + "` was not a string")
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else:
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raise Exception(("Could not access property `termCode` of object with @id `" + dt.Id) + "`")
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@staticmethod
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def set_term_code_as_string(dt: LDNode, term_code: str, context: LDContext | None=None) -> Any:
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return dt.SetProperty(LDDefinedTerm.term_code(), term_code, context)
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@staticmethod
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def try_get_name_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
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match_value: Any | None = dt.TryGetPropertyAsSingleton(LDDefinedTerm.name(), context)
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(pattern_matching_result, n) = (None, None)
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if match_value is not None:
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if str(type(value(match_value))) == "<class \'str\'>":
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pattern_matching_result = 0
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n = value(match_value)
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else:
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pattern_matching_result = 1
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else:
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if pattern_matching_result == 0:
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return n
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elif pattern_matching_result == 1:
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return None
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@staticmethod
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def get_name_as_string(dt: LDNode, context: LDContext | None=None) -> str:
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match_value: Any | None = dt.TryGetPropertyAsSingleton(LDDefinedTerm.name(), context)
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if match_value is not None:
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if str(type(value(match_value))) == "<class \'str\'>":
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n: str = value(match_value)
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return n
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else:
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raise Exception(("Property of `name` of object with @id `" + dt.Id) + "` was not a string")
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else:
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raise Exception(("Could not access property `name` of object with @id `" + dt.Id) + "`")
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@staticmethod
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def set_name_as_string(dt: LDNode, name: str, context: LDContext | None=None) -> Any:
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return dt.SetProperty(LDDefinedTerm.name(), name, context)
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@staticmethod
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def gen_id(name: str, term_code: str | None=None) -> str:
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return clean(("#OA_" + name) + "") if (term_code is None) else (("" + term_code) + "")
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@staticmethod
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def validate(dt: LDNode, context: LDContext | None=None) -> bool:
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return dt.HasProperty(LDDefinedTerm.name(), context) if dt.HasType(LDDefinedTerm.schema_type(), context) else False
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@staticmethod
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def create(name: str, id: str | None=None, term_code: str | None=None, context: LDContext | None=None) -> LDNode:
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dt: LDNode = LDNode(LDDefinedTerm.gen_id(name, term_code) if (id is None) else id, [LDDefinedTerm.schema_type()], None, context)
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dt.SetProperty(LDDefinedTerm.name(), name, context)
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dt.SetOptionalProperty(LDDefinedTerm.term_code(), term_code, context)
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return dt
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LDDefinedTerm_reflection = _expr1441
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__all__ = ["LDDefinedTerm_reflection"]
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@@ -0,0 +1,237 @@
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from __future__ import annotations
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from typing import Any
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from ...fable_modules.fable_library.option import value
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from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
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from ...fable_modules.fable_library.types import Array
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from ..ldcontext import LDContext
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from ..ldobject import (LDNode, LDGraph)
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from .comment import LDComment
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from .defined_term import LDDefinedTerm
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def _expr1545() -> TypeInfo:
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return class_type("ARCtrl.ROCrate.LDFile", None, LDFile)
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class LDFile:
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@staticmethod
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def schema_type() -> str:
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return "http://schema.org/MediaObject"
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@staticmethod
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def name() -> str:
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return "http://schema.org/name"
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@staticmethod
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def comment() -> str:
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return "http://schema.org/comment"
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@staticmethod
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def disambiguating_description() -> str:
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return "http://schema.org/disambiguatingDescription"
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@staticmethod
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def usage_info() -> str:
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return "http://schema.org/usageInfo"
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@staticmethod
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def encoding_format() -> str:
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return "http://schema.org/encodingFormat"
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@staticmethod
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def pattern() -> str:
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return "http://schema.org/pattern"
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@staticmethod
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def about() -> str:
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return "http://schema.org/about"
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@staticmethod
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def try_get_name_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
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match_value: Any | None = dt.TryGetPropertyAsSingleton(LDFile.name(), context)
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(pattern_matching_result, n) = (None, None)
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if match_value is not None:
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if str(type(value(match_value))) == "<class \'str\'>":
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pattern_matching_result = 0
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n = value(match_value)
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else:
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pattern_matching_result = 1
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else:
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pattern_matching_result = 1
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if pattern_matching_result == 0:
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return n
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elif pattern_matching_result == 1:
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return None
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@staticmethod
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def get_name_as_string(dt: LDNode, context: LDContext | None=None) -> str:
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match_value: Any | None = dt.TryGetPropertyAsSingleton(LDFile.name(), context)
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if match_value is not None:
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if str(type(value(match_value))) == "<class \'str\'>":
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n: str = value(match_value)
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return n
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else:
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raise Exception(("Property of `name` of object with @id `" + dt.Id) + "` was not a string")
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else:
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raise Exception(("Could not access property `name` of object with @id `" + dt.Id) + "`")
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@staticmethod
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def set_name_as_string(dt: LDNode, name: str, context: LDContext | None=None) -> Any:
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return dt.SetProperty(LDFile.name(), name, context)
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91
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@staticmethod
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92
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def get_comments(dt: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
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93
|
+
def filter(ld_object: LDNode, context_1: LDContext | None=None) -> bool:
|
|
94
|
+
return LDComment.validate(ld_object, context_1)
|
|
95
|
+
|
|
96
|
+
return dt.GetPropertyNodes(LDFile.comment(), filter, graph, context)
|
|
97
|
+
|
|
98
|
+
@staticmethod
|
|
99
|
+
def set_comments(dt: LDNode, comment: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
100
|
+
return dt.SetProperty(LDFile.comment(), comment, context)
|
|
101
|
+
|
|
102
|
+
@staticmethod
|
|
103
|
+
def try_get_disambiguating_description_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
|
|
104
|
+
match_value: Any | None = dt.TryGetPropertyAsSingleton(LDFile.disambiguating_description(), context)
|
|
105
|
+
(pattern_matching_result, dd) = (None, None)
|
|
106
|
+
if match_value is not None:
|
|
107
|
+
if str(type(value(match_value))) == "<class \'str\'>":
|
|
108
|
+
pattern_matching_result = 0
|
|
109
|
+
dd = value(match_value)
|
|
110
|
+
|
|
111
|
+
else:
|
|
112
|
+
pattern_matching_result = 1
|
|
113
|
+
|
|
114
|
+
|
|
115
|
+
else:
|
|
116
|
+
pattern_matching_result = 1
|
|
117
|
+
|
|
118
|
+
if pattern_matching_result == 0:
|
|
119
|
+
return dd
|
|
120
|
+
|
|
121
|
+
elif pattern_matching_result == 1:
|
|
122
|
+
return None
|
|
123
|
+
|
|
124
|
+
|
|
125
|
+
@staticmethod
|
|
126
|
+
def set_disambiguating_description_as_string(dt: LDNode, disambiguating_description: str, context: LDContext | None=None) -> Any:
|
|
127
|
+
return dt.SetProperty(LDFile.disambiguating_description(), disambiguating_description, context)
|
|
128
|
+
|
|
129
|
+
@staticmethod
|
|
130
|
+
def try_get_encoding_format_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
|
|
131
|
+
match_value: Any | None = dt.TryGetPropertyAsSingleton(LDFile.encoding_format(), context)
|
|
132
|
+
(pattern_matching_result, ef) = (None, None)
|
|
133
|
+
if match_value is not None:
|
|
134
|
+
if str(type(value(match_value))) == "<class \'str\'>":
|
|
135
|
+
pattern_matching_result = 0
|
|
136
|
+
ef = value(match_value)
|
|
137
|
+
|
|
138
|
+
else:
|
|
139
|
+
pattern_matching_result = 1
|
|
140
|
+
|
|
141
|
+
|
|
142
|
+
else:
|
|
143
|
+
pattern_matching_result = 1
|
|
144
|
+
|
|
145
|
+
if pattern_matching_result == 0:
|
|
146
|
+
return ef
|
|
147
|
+
|
|
148
|
+
elif pattern_matching_result == 1:
|
|
149
|
+
return None
|
|
150
|
+
|
|
151
|
+
|
|
152
|
+
@staticmethod
|
|
153
|
+
def set_encoding_format_as_string(dt: LDNode, encoding_format: str, context: LDContext | None=None) -> Any:
|
|
154
|
+
return dt.SetProperty(LDFile.encoding_format(), encoding_format, context)
|
|
155
|
+
|
|
156
|
+
@staticmethod
|
|
157
|
+
def try_get_usage_info_as_string(dt: LDNode, context: LDContext | None=None) -> str | None:
|
|
158
|
+
match_value: Any | None = dt.TryGetPropertyAsSingleton(LDFile.usage_info(), context)
|
|
159
|
+
(pattern_matching_result, ui) = (None, None)
|
|
160
|
+
if match_value is not None:
|
|
161
|
+
if str(type(value(match_value))) == "<class \'str\'>":
|
|
162
|
+
pattern_matching_result = 0
|
|
163
|
+
ui = value(match_value)
|
|
164
|
+
|
|
165
|
+
else:
|
|
166
|
+
pattern_matching_result = 1
|
|
167
|
+
|
|
168
|
+
|
|
169
|
+
else:
|
|
170
|
+
pattern_matching_result = 1
|
|
171
|
+
|
|
172
|
+
if pattern_matching_result == 0:
|
|
173
|
+
return ui
|
|
174
|
+
|
|
175
|
+
elif pattern_matching_result == 1:
|
|
176
|
+
return None
|
|
177
|
+
|
|
178
|
+
|
|
179
|
+
@staticmethod
|
|
180
|
+
def set_usage_info_as_string(dt: LDNode, usage_info: str, context: LDContext | None=None) -> Any:
|
|
181
|
+
return dt.SetProperty(LDFile.usage_info(), usage_info, context)
|
|
182
|
+
|
|
183
|
+
@staticmethod
|
|
184
|
+
def try_get_pattern_as_defined_term(dt: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
185
|
+
match_value: LDNode | None = dt.TryGetPropertyAsSingleNode(LDFile.pattern(), graph, context)
|
|
186
|
+
if match_value is not None:
|
|
187
|
+
def _arrow1544(__unit: None=None) -> bool:
|
|
188
|
+
dt_1: LDNode = match_value
|
|
189
|
+
return LDDefinedTerm.validate(dt_1, context)
|
|
190
|
+
|
|
191
|
+
if _arrow1544():
|
|
192
|
+
dt_2: LDNode = match_value
|
|
193
|
+
return dt_2
|
|
194
|
+
|
|
195
|
+
else:
|
|
196
|
+
raise Exception(("Property of `pattern` of object with @id `" + dt.Id) + "` was not a DefinedTerm")
|
|
197
|
+
|
|
198
|
+
|
|
199
|
+
else:
|
|
200
|
+
return None
|
|
201
|
+
|
|
202
|
+
|
|
203
|
+
@staticmethod
|
|
204
|
+
def set_pattern_as_defined_term(dt: LDNode, pattern: LDNode, context: LDContext | None=None) -> Any:
|
|
205
|
+
return dt.SetProperty(LDFile.pattern(), pattern, context)
|
|
206
|
+
|
|
207
|
+
@staticmethod
|
|
208
|
+
def try_get_about(dt: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
209
|
+
return dt.TryGetPropertyAsSingleNode(LDFile.about(), graph, context)
|
|
210
|
+
|
|
211
|
+
@staticmethod
|
|
212
|
+
def set_about(dt: LDNode, about: LDNode, context: LDContext | None=None) -> Any:
|
|
213
|
+
return dt.SetProperty(LDFile.about(), about, context)
|
|
214
|
+
|
|
215
|
+
@staticmethod
|
|
216
|
+
def gen_id(name: str) -> str:
|
|
217
|
+
return ("" + name) + ""
|
|
218
|
+
|
|
219
|
+
@staticmethod
|
|
220
|
+
def validate(dt: LDNode, context: LDContext | None=None) -> bool:
|
|
221
|
+
return dt.HasProperty(LDFile.name(), context) if dt.HasType(LDFile.schema_type(), context) else False
|
|
222
|
+
|
|
223
|
+
@staticmethod
|
|
224
|
+
def create(name: str, id: str | None=None, comments: Array[LDNode] | None=None, disambiguating_description: str | None=None, encoding_format: str | None=None, usage_info: str | None=None, context: LDContext | None=None) -> LDNode:
|
|
225
|
+
dt: LDNode = LDNode(LDFile.gen_id(name) if (id is None) else id, [LDFile.schema_type()], None, context)
|
|
226
|
+
dt.SetProperty(LDFile.name(), name, context)
|
|
227
|
+
dt.SetOptionalProperty(LDFile.comment(), comments, context)
|
|
228
|
+
dt.SetOptionalProperty(LDFile.disambiguating_description(), disambiguating_description, context)
|
|
229
|
+
dt.SetOptionalProperty(LDFile.encoding_format(), encoding_format, context)
|
|
230
|
+
dt.SetOptionalProperty(LDFile.usage_info(), usage_info, context)
|
|
231
|
+
return dt
|
|
232
|
+
|
|
233
|
+
|
|
234
|
+
LDFile_reflection = _expr1545
|
|
235
|
+
|
|
236
|
+
__all__ = ["LDFile_reflection"]
|
|
237
|
+
|
|
@@ -0,0 +1,324 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from datetime import datetime
|
|
3
|
+
from typing import (Any, TypeVar)
|
|
4
|
+
from ...fable_modules.fable_library.option import (value, default_arg)
|
|
5
|
+
from ...fable_modules.fable_library.reflection import (TypeInfo, class_type)
|
|
6
|
+
from ...fable_modules.fable_library.types import Array
|
|
7
|
+
from ...Core.Helper.collections_ import ResizeArray_map
|
|
8
|
+
from ..helper import clean
|
|
9
|
+
from ..ldcontext import LDContext
|
|
10
|
+
from ..ldobject import (LDNode, LDGraph)
|
|
11
|
+
from .file import LDFile
|
|
12
|
+
from .lab_protocol import LDLabProtocol
|
|
13
|
+
from .person import LDPerson
|
|
14
|
+
from .property_value import LDPropertyValue
|
|
15
|
+
from .sample import LDSample
|
|
16
|
+
|
|
17
|
+
__C = TypeVar("__C")
|
|
18
|
+
|
|
19
|
+
__B = TypeVar("__B")
|
|
20
|
+
|
|
21
|
+
def _expr1560() -> TypeInfo:
|
|
22
|
+
return class_type("ARCtrl.ROCrate.LDLabProcess", None, LDLabProcess)
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
class LDLabProcess:
|
|
26
|
+
@staticmethod
|
|
27
|
+
def schema_type() -> str:
|
|
28
|
+
return "https://bioschemas.org/LabProcess"
|
|
29
|
+
|
|
30
|
+
@staticmethod
|
|
31
|
+
def name() -> str:
|
|
32
|
+
return "http://schema.org/name"
|
|
33
|
+
|
|
34
|
+
@staticmethod
|
|
35
|
+
def agent() -> str:
|
|
36
|
+
return "http://schema.org/agent"
|
|
37
|
+
|
|
38
|
+
@staticmethod
|
|
39
|
+
def object_() -> str:
|
|
40
|
+
return "http://schema.org/object"
|
|
41
|
+
|
|
42
|
+
@staticmethod
|
|
43
|
+
def result() -> str:
|
|
44
|
+
return "http://schema.org/result"
|
|
45
|
+
|
|
46
|
+
@staticmethod
|
|
47
|
+
def executes_lab_protocol() -> str:
|
|
48
|
+
return "https://bioschemas.org/executesLabProtocol"
|
|
49
|
+
|
|
50
|
+
@staticmethod
|
|
51
|
+
def parameter_value() -> str:
|
|
52
|
+
return "https://bioschemas.org/parameterValue"
|
|
53
|
+
|
|
54
|
+
@staticmethod
|
|
55
|
+
def end_time() -> str:
|
|
56
|
+
return "http://schema.org/endTime"
|
|
57
|
+
|
|
58
|
+
@staticmethod
|
|
59
|
+
def disambiguating_description() -> str:
|
|
60
|
+
return "http://schema.org/disambiguatingDescription"
|
|
61
|
+
|
|
62
|
+
@staticmethod
|
|
63
|
+
def try_get_name_as_string(lp: LDNode, context: LDContext | None=None) -> str | None:
|
|
64
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDLabProcess.name(), context)
|
|
65
|
+
(pattern_matching_result, n) = (None, None)
|
|
66
|
+
if match_value is not None:
|
|
67
|
+
if str(type(value(match_value))) == "<class \'str\'>":
|
|
68
|
+
pattern_matching_result = 0
|
|
69
|
+
n = value(match_value)
|
|
70
|
+
|
|
71
|
+
else:
|
|
72
|
+
pattern_matching_result = 1
|
|
73
|
+
|
|
74
|
+
|
|
75
|
+
else:
|
|
76
|
+
pattern_matching_result = 1
|
|
77
|
+
|
|
78
|
+
if pattern_matching_result == 0:
|
|
79
|
+
return n
|
|
80
|
+
|
|
81
|
+
elif pattern_matching_result == 1:
|
|
82
|
+
return None
|
|
83
|
+
|
|
84
|
+
|
|
85
|
+
@staticmethod
|
|
86
|
+
def get_name_as_string(lp: LDNode, context: LDContext | None=None) -> str:
|
|
87
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDLabProcess.name(), context)
|
|
88
|
+
if match_value is not None:
|
|
89
|
+
if str(type(value(match_value))) == "<class \'str\'>":
|
|
90
|
+
n: str = value(match_value)
|
|
91
|
+
return n
|
|
92
|
+
|
|
93
|
+
else:
|
|
94
|
+
raise Exception(("property `name` of object with @id `" + lp.Id) + "` was not a string")
|
|
95
|
+
|
|
96
|
+
|
|
97
|
+
else:
|
|
98
|
+
raise Exception(("Could not access property `name` of object with @id `" + lp.Id) + "`")
|
|
99
|
+
|
|
100
|
+
|
|
101
|
+
@staticmethod
|
|
102
|
+
def set_name_as_string(lp: LDNode, name: str, context: LDContext | None=None) -> Any:
|
|
103
|
+
return lp.SetProperty(LDLabProcess.name(), name, context)
|
|
104
|
+
|
|
105
|
+
@staticmethod
|
|
106
|
+
def try_get_agent(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
107
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDLabProcess.agent(), graph, context)
|
|
108
|
+
(pattern_matching_result, a_1) = (None, None)
|
|
109
|
+
if match_value is not None:
|
|
110
|
+
def _arrow1554(__unit: None=None) -> bool:
|
|
111
|
+
ld_object: LDNode = match_value
|
|
112
|
+
return LDPerson.validate(ld_object, context)
|
|
113
|
+
|
|
114
|
+
if _arrow1554():
|
|
115
|
+
pattern_matching_result = 0
|
|
116
|
+
a_1 = match_value
|
|
117
|
+
|
|
118
|
+
else:
|
|
119
|
+
pattern_matching_result = 1
|
|
120
|
+
|
|
121
|
+
|
|
122
|
+
else:
|
|
123
|
+
pattern_matching_result = 1
|
|
124
|
+
|
|
125
|
+
if pattern_matching_result == 0:
|
|
126
|
+
return a_1
|
|
127
|
+
|
|
128
|
+
elif pattern_matching_result == 1:
|
|
129
|
+
return None
|
|
130
|
+
|
|
131
|
+
|
|
132
|
+
@staticmethod
|
|
133
|
+
def get_agent(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode:
|
|
134
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDLabProcess.agent(), graph, context)
|
|
135
|
+
if match_value is not None:
|
|
136
|
+
def _arrow1555(__unit: None=None) -> bool:
|
|
137
|
+
ld_object: LDNode = match_value
|
|
138
|
+
return LDPerson.validate(ld_object, context)
|
|
139
|
+
|
|
140
|
+
if _arrow1555():
|
|
141
|
+
a_1: LDNode = match_value
|
|
142
|
+
return a_1
|
|
143
|
+
|
|
144
|
+
else:
|
|
145
|
+
raise Exception(("Property of `agent` of object with @id `" + lp.Id) + "` was not a valid Person")
|
|
146
|
+
|
|
147
|
+
|
|
148
|
+
else:
|
|
149
|
+
raise Exception(("Could not access property `agent` of object with @id `" + lp.Id) + "`")
|
|
150
|
+
|
|
151
|
+
|
|
152
|
+
@staticmethod
|
|
153
|
+
def set_agent(lp: LDNode, agent: LDNode, context: LDContext | None=None) -> Any:
|
|
154
|
+
return lp.SetProperty(LDLabProcess.agent(), agent, context)
|
|
155
|
+
|
|
156
|
+
@staticmethod
|
|
157
|
+
def get_objects(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
158
|
+
return lp.GetPropertyNodes(LDLabProcess.object_(), None, graph, context)
|
|
159
|
+
|
|
160
|
+
@staticmethod
|
|
161
|
+
def get_objects_as_sample(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
162
|
+
def filter(ld_object: LDNode, context_1: LDContext | None=None) -> bool:
|
|
163
|
+
return LDSample.validate(ld_object, context_1)
|
|
164
|
+
|
|
165
|
+
return lp.GetPropertyNodes(LDLabProcess.object_(), filter, graph, context)
|
|
166
|
+
|
|
167
|
+
@staticmethod
|
|
168
|
+
def get_objects_as_data(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
169
|
+
def filter(ld_object: LDNode, context_1: LDContext | None=None) -> bool:
|
|
170
|
+
return LDFile.validate(ld_object, context_1)
|
|
171
|
+
|
|
172
|
+
return lp.GetPropertyNodes(LDLabProcess.object_(), filter, graph, context)
|
|
173
|
+
|
|
174
|
+
@staticmethod
|
|
175
|
+
def set_objects(lp: LDNode, objects: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
176
|
+
return lp.SetProperty(LDLabProcess.object_(), objects, context)
|
|
177
|
+
|
|
178
|
+
@staticmethod
|
|
179
|
+
def get_results(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
180
|
+
return lp.GetPropertyNodes(LDLabProcess.result(), None, graph, context)
|
|
181
|
+
|
|
182
|
+
@staticmethod
|
|
183
|
+
def get_results_as_sample(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
184
|
+
def filter(ld_object: LDNode, context_1: LDContext | None=None) -> bool:
|
|
185
|
+
return LDSample.validate(ld_object, context_1)
|
|
186
|
+
|
|
187
|
+
return lp.GetPropertyNodes(LDLabProcess.result(), filter, graph, context)
|
|
188
|
+
|
|
189
|
+
@staticmethod
|
|
190
|
+
def get_results_as_data(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
191
|
+
def filter(ld_object: LDNode, context_1: LDContext | None=None) -> bool:
|
|
192
|
+
return LDFile.validate(ld_object, context_1)
|
|
193
|
+
|
|
194
|
+
return lp.GetPropertyNodes(LDLabProcess.result(), filter, graph, context)
|
|
195
|
+
|
|
196
|
+
@staticmethod
|
|
197
|
+
def set_results(lp: LDNode, results: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
198
|
+
return lp.SetProperty(LDLabProcess.result(), results, context)
|
|
199
|
+
|
|
200
|
+
@staticmethod
|
|
201
|
+
def try_get_executes_lab_protocol(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> LDNode | None:
|
|
202
|
+
match_value: LDNode | None = lp.TryGetPropertyAsSingleNode(LDLabProcess.executes_lab_protocol(), graph, context)
|
|
203
|
+
(pattern_matching_result, l_1) = (None, None)
|
|
204
|
+
if match_value is not None:
|
|
205
|
+
def _arrow1556(__unit: None=None) -> bool:
|
|
206
|
+
ld_object: LDNode = match_value
|
|
207
|
+
return LDLabProtocol.validate(ld_object, context)
|
|
208
|
+
|
|
209
|
+
if _arrow1556():
|
|
210
|
+
pattern_matching_result = 0
|
|
211
|
+
l_1 = match_value
|
|
212
|
+
|
|
213
|
+
else:
|
|
214
|
+
pattern_matching_result = 1
|
|
215
|
+
|
|
216
|
+
|
|
217
|
+
else:
|
|
218
|
+
pattern_matching_result = 1
|
|
219
|
+
|
|
220
|
+
if pattern_matching_result == 0:
|
|
221
|
+
return l_1
|
|
222
|
+
|
|
223
|
+
elif pattern_matching_result == 1:
|
|
224
|
+
return None
|
|
225
|
+
|
|
226
|
+
|
|
227
|
+
@staticmethod
|
|
228
|
+
def set_executes_lab_protocol(lp: LDNode, executes_lab_protocol: LDNode, context: LDContext | None=None) -> Any:
|
|
229
|
+
return lp.SetProperty(LDLabProcess.executes_lab_protocol(), executes_lab_protocol, context)
|
|
230
|
+
|
|
231
|
+
@staticmethod
|
|
232
|
+
def get_parameter_values(lp: LDNode, graph: LDGraph | None=None, context: LDContext | None=None) -> Array[LDNode]:
|
|
233
|
+
def filter(ld_object: LDNode, context_1: LDContext | None=None) -> bool:
|
|
234
|
+
return LDPropertyValue.validate(ld_object, context_1)
|
|
235
|
+
|
|
236
|
+
return lp.GetPropertyNodes(LDLabProcess.parameter_value(), filter, graph, context)
|
|
237
|
+
|
|
238
|
+
@staticmethod
|
|
239
|
+
def set_parameter_values(lp: LDNode, parameter_values: Array[LDNode], context: LDContext | None=None) -> Any:
|
|
240
|
+
return lp.SetProperty(LDLabProcess.parameter_value(), parameter_values, context)
|
|
241
|
+
|
|
242
|
+
@staticmethod
|
|
243
|
+
def try_get_end_time(lp: LDNode, context: LDContext | None=None) -> Any | None:
|
|
244
|
+
match_value: Any | None = lp.TryGetPropertyAsSingleton(LDLabProcess.end_time(), context)
|
|
245
|
+
(pattern_matching_result, et) = (None, None)
|
|
246
|
+
if match_value is not None:
|
|
247
|
+
if isinstance(value(match_value), datetime):
|
|
248
|
+
pattern_matching_result = 0
|
|
249
|
+
et = value(match_value)
|
|
250
|
+
|
|
251
|
+
else:
|
|
252
|
+
pattern_matching_result = 1
|
|
253
|
+
|
|
254
|
+
|
|
255
|
+
else:
|
|
256
|
+
pattern_matching_result = 1
|
|
257
|
+
|
|
258
|
+
if pattern_matching_result == 0:
|
|
259
|
+
return et
|
|
260
|
+
|
|
261
|
+
elif pattern_matching_result == 1:
|
|
262
|
+
return None
|
|
263
|
+
|
|
264
|
+
|
|
265
|
+
@staticmethod
|
|
266
|
+
def set_end_time(lp: LDNode, end_time: Any, context: LDContext | None=None) -> Any:
|
|
267
|
+
return lp.SetProperty(LDLabProcess.end_time(), end_time, context)
|
|
268
|
+
|
|
269
|
+
@staticmethod
|
|
270
|
+
def get_disambiguating_descriptions_as_string(lp: LDNode, context: LDContext | None=None) -> Array[str]:
|
|
271
|
+
def f(o_1: Any=None) -> Any:
|
|
272
|
+
return o_1
|
|
273
|
+
|
|
274
|
+
def filter(o: Any=None, context_1: LDContext | None=None) -> bool:
|
|
275
|
+
return str(type(o)) == "<class \'str\'>"
|
|
276
|
+
|
|
277
|
+
return ResizeArray_map(f, lp.GetPropertyValues(LDLabProcess.disambiguating_description(), filter, context))
|
|
278
|
+
|
|
279
|
+
@staticmethod
|
|
280
|
+
def set_disambiguating_descriptions_as_string(lp: LDNode, disambiguating_descriptions: Array[str], context: LDContext | None=None) -> Any:
|
|
281
|
+
return lp.SetProperty(LDLabProcess.disambiguating_description(), disambiguating_descriptions, context)
|
|
282
|
+
|
|
283
|
+
@staticmethod
|
|
284
|
+
def validate(lp: LDNode, context: LDContext | None=None) -> bool:
|
|
285
|
+
return lp.HasProperty(LDLabProcess.name(), context) if lp.HasType(LDLabProcess.schema_type(), context) else False
|
|
286
|
+
|
|
287
|
+
@staticmethod
|
|
288
|
+
def gen_id(name: Any, assay_name: Any | None=None, study_name: Any | None=None) -> str:
|
|
289
|
+
def _arrow1557(__unit: None=None) -> str:
|
|
290
|
+
study_1: __C = value(study_name)
|
|
291
|
+
return ((("#Process_" + str(study_1)) + "_") + str(name)) + ""
|
|
292
|
+
|
|
293
|
+
def _arrow1558(__unit: None=None) -> str:
|
|
294
|
+
assay_1: __B = value(assay_name)
|
|
295
|
+
return ((("#Process_" + str(assay_1)) + "_") + str(name)) + ""
|
|
296
|
+
|
|
297
|
+
def _arrow1559(__unit: None=None) -> str:
|
|
298
|
+
assay: __B = value(assay_name)
|
|
299
|
+
study: __C = value(study_name)
|
|
300
|
+
return ((((("#Process_" + str(study)) + "_") + str(assay)) + "_") + str(name)) + ""
|
|
301
|
+
|
|
302
|
+
return clean((_arrow1557() if (study_name is not None) else (("#Process_" + str(name)) + "")) if (assay_name is None) else (_arrow1558() if (study_name is None) else _arrow1559()))
|
|
303
|
+
|
|
304
|
+
@staticmethod
|
|
305
|
+
def create(name: str, objects: Array[LDNode] | None=None, results: Array[LDNode] | None=None, id: str | None=None, agent: LDNode | None=None, executes_lab_protocol: LDNode | None=None, parameter_values: Array[LDNode] | None=None, end_time: Any | None=None, disambiguating_descriptions: Array[str] | None=None, context: LDContext | None=None) -> LDNode:
|
|
306
|
+
id_1: str = LDLabProcess.gen_id(name) if (id is None) else id
|
|
307
|
+
objects_1: Array[LDNode] = default_arg(objects, [])
|
|
308
|
+
results_1: Array[LDNode] = default_arg(results, [])
|
|
309
|
+
lp: LDNode = LDNode(id_1, [LDLabProcess.schema_type()], None, context)
|
|
310
|
+
lp.SetProperty(LDLabProcess.name(), name, context)
|
|
311
|
+
lp.SetOptionalProperty(LDLabProcess.agent(), agent, context)
|
|
312
|
+
lp.SetProperty(LDLabProcess.object_(), objects_1, context)
|
|
313
|
+
lp.SetProperty(LDLabProcess.result(), results_1, context)
|
|
314
|
+
lp.SetOptionalProperty(LDLabProcess.executes_lab_protocol(), executes_lab_protocol, context)
|
|
315
|
+
lp.SetOptionalProperty(LDLabProcess.parameter_value(), parameter_values, context)
|
|
316
|
+
lp.SetOptionalProperty(LDLabProcess.end_time(), end_time, context)
|
|
317
|
+
lp.SetOptionalProperty(LDLabProcess.disambiguating_description(), disambiguating_descriptions, context)
|
|
318
|
+
return lp
|
|
319
|
+
|
|
320
|
+
|
|
321
|
+
LDLabProcess_reflection = _expr1560
|
|
322
|
+
|
|
323
|
+
__all__ = ["LDLabProcess_reflection"]
|
|
324
|
+
|