arctrl 3.0.0a3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arctrl/__init__.py +18 -0
- arctrl/py/CWL/__init__.py +0 -0
- arctrl/py/CWL/cwltypes.py +150 -0
- arctrl/py/CWL/decode.py +973 -0
- arctrl/py/CWL/encode.py +1 -0
- arctrl/py/CWL/inputs.py +88 -0
- arctrl/py/CWL/outputs.py +85 -0
- arctrl/py/CWL/requirements.py +77 -0
- arctrl/py/CWL/tool_description.py +103 -0
- arctrl/py/CWL/workflow_description.py +104 -0
- arctrl/py/CWL/workflow_steps.py +113 -0
- arctrl/py/Contract/__init__.py +0 -0
- arctrl/py/Contract/arc.py +60 -0
- arctrl/py/Contract/arc_assay.py +125 -0
- arctrl/py/Contract/arc_investigation.py +88 -0
- arctrl/py/Contract/arc_run.py +125 -0
- arctrl/py/Contract/arc_study.py +126 -0
- arctrl/py/Contract/arc_workflow.py +125 -0
- arctrl/py/Contract/contract.py +153 -0
- arctrl/py/Contract/datamap.py +372 -0
- arctrl/py/Contract/git.py +118 -0
- arctrl/py/Contract/validation_packages_config.py +107 -0
- arctrl/py/ContractIO/__init__.py +0 -0
- arctrl/py/ContractIO/contract_io.py +344 -0
- arctrl/py/ContractIO/file_system_helper.py +264 -0
- arctrl/py/Core/Helper/__init__.py +0 -0
- arctrl/py/Core/Helper/collections_.py +438 -0
- arctrl/py/Core/Helper/date_time.py +26 -0
- arctrl/py/Core/Helper/hash_codes.py +60 -0
- arctrl/py/Core/Helper/identifier.py +248 -0
- arctrl/py/Core/Helper/orcid.py +42 -0
- arctrl/py/Core/Helper/printer.py +13 -0
- arctrl/py/Core/Helper/regex.py +554 -0
- arctrl/py/Core/Helper/sem_ver.py +71 -0
- arctrl/py/Core/Helper/url.py +148 -0
- arctrl/py/Core/Process/__init__.py +0 -0
- arctrl/py/Core/Process/column_index.py +280 -0
- arctrl/py/Core/Process/component.py +200 -0
- arctrl/py/Core/Process/factor.py +151 -0
- arctrl/py/Core/Process/factor_value.py +182 -0
- arctrl/py/Core/Process/material.py +74 -0
- arctrl/py/Core/Process/material_attribute.py +95 -0
- arctrl/py/Core/Process/material_attribute_value.py +184 -0
- arctrl/py/Core/Process/material_type.py +45 -0
- arctrl/py/Core/Process/process.py +477 -0
- arctrl/py/Core/Process/process_input.py +265 -0
- arctrl/py/Core/Process/process_output.py +235 -0
- arctrl/py/Core/Process/process_parameter_value.py +200 -0
- arctrl/py/Core/Process/process_sequence.py +435 -0
- arctrl/py/Core/Process/protocol.py +175 -0
- arctrl/py/Core/Process/protocol_parameter.py +98 -0
- arctrl/py/Core/Process/sample.py +82 -0
- arctrl/py/Core/Process/source.py +62 -0
- arctrl/py/Core/Table/__init__.py +0 -0
- arctrl/py/Core/Table/arc_table.py +1264 -0
- arctrl/py/Core/Table/arc_table_aux.py +575 -0
- arctrl/py/Core/Table/arc_tables.py +591 -0
- arctrl/py/Core/Table/composite_cell.py +319 -0
- arctrl/py/Core/Table/composite_column.py +73 -0
- arctrl/py/Core/Table/composite_header.py +739 -0
- arctrl/py/Core/__init__.py +0 -0
- arctrl/py/Core/arc_types.py +5064 -0
- arctrl/py/Core/comment.py +128 -0
- arctrl/py/Core/comment_list.py +127 -0
- arctrl/py/Core/conversion.py +1313 -0
- arctrl/py/Core/data.py +245 -0
- arctrl/py/Core/data_context.py +157 -0
- arctrl/py/Core/data_file.py +112 -0
- arctrl/py/Core/data_map.py +225 -0
- arctrl/py/Core/identifier_setters.py +31 -0
- arctrl/py/Core/iproperty_value.py +36 -0
- arctrl/py/Core/ontology_annotation.py +299 -0
- arctrl/py/Core/ontology_source_reference.py +114 -0
- arctrl/py/Core/person.py +259 -0
- arctrl/py/Core/publication.py +161 -0
- arctrl/py/Core/template.py +231 -0
- arctrl/py/Core/templates.py +148 -0
- arctrl/py/Core/uri.py +11 -0
- arctrl/py/Core/value.py +188 -0
- arctrl/py/FileSystem/__init__.py +0 -0
- arctrl/py/FileSystem/commit.py +21 -0
- arctrl/py/FileSystem/default_gitattributes.py +5 -0
- arctrl/py/FileSystem/default_gitignore.py +5 -0
- arctrl/py/FileSystem/file_system.py +58 -0
- arctrl/py/FileSystem/file_system_tree.py +426 -0
- arctrl/py/FileSystem/path.py +64 -0
- arctrl/py/Json/DataMap/__init__.py +0 -0
- arctrl/py/Json/DataMap/data_context.py +101 -0
- arctrl/py/Json/DataMap/data_map.py +53 -0
- arctrl/py/Json/Process/__init__.py +0 -0
- arctrl/py/Json/Process/assay_materials.py +46 -0
- arctrl/py/Json/Process/component.py +79 -0
- arctrl/py/Json/Process/factor.py +107 -0
- arctrl/py/Json/Process/factor_value.py +101 -0
- arctrl/py/Json/Process/material.py +226 -0
- arctrl/py/Json/Process/material_attribute.py +79 -0
- arctrl/py/Json/Process/material_attribute_value.py +101 -0
- arctrl/py/Json/Process/material_type.py +53 -0
- arctrl/py/Json/Process/process.py +296 -0
- arctrl/py/Json/Process/process_input.py +83 -0
- arctrl/py/Json/Process/process_output.py +67 -0
- arctrl/py/Json/Process/process_parameter_value.py +81 -0
- arctrl/py/Json/Process/protocol.py +354 -0
- arctrl/py/Json/Process/protocol_parameter.py +79 -0
- arctrl/py/Json/Process/sample.py +277 -0
- arctrl/py/Json/Process/source.py +214 -0
- arctrl/py/Json/Process/study_materials.py +52 -0
- arctrl/py/Json/Process/value.py +56 -0
- arctrl/py/Json/ROCrate/__init__.py +0 -0
- arctrl/py/Json/ROCrate/ldcontext.py +133 -0
- arctrl/py/Json/ROCrate/ldgraph.py +111 -0
- arctrl/py/Json/ROCrate/ldnode.py +290 -0
- arctrl/py/Json/ROCrate/ldref.py +44 -0
- arctrl/py/Json/ROCrate/ldvalue.py +102 -0
- arctrl/py/Json/Table/__init__.py +0 -0
- arctrl/py/Json/Table/arc_table.py +393 -0
- arctrl/py/Json/Table/cell_table.py +83 -0
- arctrl/py/Json/Table/composite_cell.py +136 -0
- arctrl/py/Json/Table/composite_header.py +67 -0
- arctrl/py/Json/Table/iotype.py +24 -0
- arctrl/py/Json/Table/oatable.py +82 -0
- arctrl/py/Json/Table/templates.py +281 -0
- arctrl/py/Json/__init__.py +0 -0
- arctrl/py/Json/assay.py +600 -0
- arctrl/py/Json/comment.py +206 -0
- arctrl/py/Json/context/rocrate/__init__.py +0 -0
- arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
- arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
- arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
- arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
- arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
- arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
- arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
- arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
- arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
- arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
- arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
- arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
- arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
- arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
- arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
- arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
- arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
- arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
- arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
- arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
- arctrl/py/Json/converter_options.py +23 -0
- arctrl/py/Json/data.py +356 -0
- arctrl/py/Json/data_file.py +63 -0
- arctrl/py/Json/decode.py +155 -0
- arctrl/py/Json/encode.py +92 -0
- arctrl/py/Json/idtable.py +44 -0
- arctrl/py/Json/investigation.py +695 -0
- arctrl/py/Json/ontology_annotation.py +404 -0
- arctrl/py/Json/ontology_source_reference.py +255 -0
- arctrl/py/Json/person.py +658 -0
- arctrl/py/Json/property_value.py +359 -0
- arctrl/py/Json/publication.py +279 -0
- arctrl/py/Json/string_table.py +76 -0
- arctrl/py/Json/study.py +793 -0
- arctrl/py/JsonIO/DataMap/__init__.py +0 -0
- arctrl/py/JsonIO/DataMap/data_map.py +53 -0
- arctrl/py/JsonIO/Process/__init__.py +0 -0
- arctrl/py/JsonIO/Process/component.py +60 -0
- arctrl/py/JsonIO/Process/factor.py +36 -0
- arctrl/py/JsonIO/Process/factor_value.py +38 -0
- arctrl/py/JsonIO/Process/material.py +60 -0
- arctrl/py/JsonIO/Process/material_attribute.py +38 -0
- arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
- arctrl/py/JsonIO/Process/material_type.py +36 -0
- arctrl/py/JsonIO/Process/process.py +60 -0
- arctrl/py/JsonIO/Process/process_input.py +38 -0
- arctrl/py/JsonIO/Process/process_output.py +60 -0
- arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
- arctrl/py/JsonIO/Process/process_sequence.py +71 -0
- arctrl/py/JsonIO/Process/protocol.py +60 -0
- arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
- arctrl/py/JsonIO/Process/sample.py +60 -0
- arctrl/py/JsonIO/Process/source.py +60 -0
- arctrl/py/JsonIO/Process/study_materials.py +52 -0
- arctrl/py/JsonIO/Process/value.py +32 -0
- arctrl/py/JsonIO/Table/__init__.py +0 -0
- arctrl/py/JsonIO/Table/arc_table.py +121 -0
- arctrl/py/JsonIO/Table/composite_cell.py +36 -0
- arctrl/py/JsonIO/Table/composite_header.py +36 -0
- arctrl/py/JsonIO/Table/compression.py +85 -0
- arctrl/py/JsonIO/Table/iotype.py +36 -0
- arctrl/py/JsonIO/Table/templates.py +113 -0
- arctrl/py/JsonIO/__init__.py +0 -0
- arctrl/py/JsonIO/assay.py +113 -0
- arctrl/py/JsonIO/comment.py +80 -0
- arctrl/py/JsonIO/data.py +60 -0
- arctrl/py/JsonIO/data_file.py +58 -0
- arctrl/py/JsonIO/decode.py +9 -0
- arctrl/py/JsonIO/encode.py +1 -0
- arctrl/py/JsonIO/investigation.py +113 -0
- arctrl/py/JsonIO/ldobject.py +106 -0
- arctrl/py/JsonIO/ontology_annotation.py +80 -0
- arctrl/py/JsonIO/ontology_source_reference.py +80 -0
- arctrl/py/JsonIO/person.py +82 -0
- arctrl/py/JsonIO/publication.py +82 -0
- arctrl/py/JsonIO/study.py +114 -0
- arctrl/py/ROCrate/Generic/__init__.py +0 -0
- arctrl/py/ROCrate/Generic/comment.py +131 -0
- arctrl/py/ROCrate/Generic/dataset.py +817 -0
- arctrl/py/ROCrate/Generic/defined_term.py +131 -0
- arctrl/py/ROCrate/Generic/file.py +237 -0
- arctrl/py/ROCrate/Generic/lab_process.py +324 -0
- arctrl/py/ROCrate/Generic/lab_protocol.py +338 -0
- arctrl/py/ROCrate/Generic/organization.py +83 -0
- arctrl/py/ROCrate/Generic/person.py +484 -0
- arctrl/py/ROCrate/Generic/postal_address.py +195 -0
- arctrl/py/ROCrate/Generic/property_value.py +696 -0
- arctrl/py/ROCrate/Generic/sample.py +202 -0
- arctrl/py/ROCrate/Generic/scholarly_article.py +229 -0
- arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
- arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
- arctrl/py/ROCrate/ISAProfile/data.py +65 -0
- arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
- arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
- arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
- arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
- arctrl/py/ROCrate/ISAProfile/person.py +72 -0
- arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
- arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
- arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
- arctrl/py/ROCrate/ISAProfile/study.py +74 -0
- arctrl/py/ROCrate/__init__.py +0 -0
- arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
- arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
- arctrl/py/ROCrate/helper.py +8 -0
- arctrl/py/ROCrate/ldcontext.py +362 -0
- arctrl/py/ROCrate/ldobject.py +1247 -0
- arctrl/py/ROCrate/rocrate_context.py +51 -0
- arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +193 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +210 -0
- arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
- arctrl/py/Spreadsheet/DataMapTable/__init__.py +0 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_column.py +114 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_header.py +618 -0
- arctrl/py/Spreadsheet/DataMapTable/data_map_table.py +119 -0
- arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
- arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
- arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
- arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
- arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
- arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
- arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
- arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
- arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
- arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
- arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
- arctrl/py/Spreadsheet/Metadata/run.py +122 -0
- arctrl/py/Spreadsheet/Metadata/sparse_table.py +508 -0
- arctrl/py/Spreadsheet/Metadata/study.py +312 -0
- arctrl/py/Spreadsheet/Metadata/workflow.py +151 -0
- arctrl/py/Spreadsheet/__init__.py +0 -0
- arctrl/py/Spreadsheet/arc_assay.py +233 -0
- arctrl/py/Spreadsheet/arc_investigation.py +418 -0
- arctrl/py/Spreadsheet/arc_run.py +190 -0
- arctrl/py/Spreadsheet/arc_study.py +144 -0
- arctrl/py/Spreadsheet/arc_workflow.py +176 -0
- arctrl/py/Spreadsheet/assembly_info.py +1 -0
- arctrl/py/Spreadsheet/collection_aux.py +167 -0
- arctrl/py/Spreadsheet/data_map.py +44 -0
- arctrl/py/Spreadsheet/template.py +460 -0
- arctrl/py/ValidationPackages/__init__.py +0 -0
- arctrl/py/ValidationPackages/validation_package.py +82 -0
- arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
- arctrl/py/WebRequest/__init__.py +0 -0
- arctrl/py/WebRequest/web_request.py +9 -0
- arctrl/py/WebRequest/web_request_py.py +135 -0
- arctrl/py/Yaml/__init__.py +0 -0
- arctrl/py/Yaml/decode.py +1 -0
- arctrl/py/Yaml/encode.py +10 -0
- arctrl/py/Yaml/validation_package.py +77 -0
- arctrl/py/Yaml/validation_packages_config.py +86 -0
- arctrl/py/__init__.py +0 -0
- arctrl/py/arc.py +1400 -0
- arctrl/py/column_index.py +280 -0
- arctrl/py/conversion.py +2184 -0
- arctrl/py/cross_async.py +76 -0
- arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
- arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
- arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
- arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
- arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
- arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
- arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
- arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
- arctrl/py/fable_modules/fable_library/__init__.py +0 -0
- arctrl/py/fable_modules/fable_library/array_.py +1528 -0
- arctrl/py/fable_modules/fable_library/async_.py +377 -0
- arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
- arctrl/py/fable_modules/fable_library/big_int.py +330 -0
- arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
- arctrl/py/fable_modules/fable_library/boolean.py +26 -0
- arctrl/py/fable_modules/fable_library/char.py +237 -0
- arctrl/py/fable_modules/fable_library/choice.py +212 -0
- arctrl/py/fable_modules/fable_library/date.py +779 -0
- arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
- arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
- arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
- arctrl/py/fable_modules/fable_library/double.py +87 -0
- arctrl/py/fable_modules/fable_library/encoding.py +41 -0
- arctrl/py/fable_modules/fable_library/event.py +206 -0
- arctrl/py/fable_modules/fable_library/file.py +107 -0
- arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
- arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
- arctrl/py/fable_modules/fable_library/global_.py +63 -0
- arctrl/py/fable_modules/fable_library/guid.py +41 -0
- arctrl/py/fable_modules/fable_library/int32.py +73 -0
- arctrl/py/fable_modules/fable_library/list.py +1788 -0
- arctrl/py/fable_modules/fable_library/long.py +240 -0
- arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
- arctrl/py/fable_modules/fable_library/map.py +1854 -0
- arctrl/py/fable_modules/fable_library/map_util.py +148 -0
- arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
- arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
- arctrl/py/fable_modules/fable_library/native.py +45 -0
- arctrl/py/fable_modules/fable_library/numeric.py +46 -0
- arctrl/py/fable_modules/fable_library/observable.py +222 -0
- arctrl/py/fable_modules/fable_library/option.py +128 -0
- arctrl/py/fable_modules/fable_library/path.py +62 -0
- arctrl/py/fable_modules/fable_library/range.py +117 -0
- arctrl/py/fable_modules/fable_library/reflection.py +463 -0
- arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
- arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
- arctrl/py/fable_modules/fable_library/result.py +212 -0
- arctrl/py/fable_modules/fable_library/seq.py +1979 -0
- arctrl/py/fable_modules/fable_library/seq2.py +221 -0
- arctrl/py/fable_modules/fable_library/set.py +2414 -0
- arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
- arctrl/py/fable_modules/fable_library/string_.py +573 -0
- arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
- arctrl/py/fable_modules/fable_library/system_text.py +237 -0
- arctrl/py/fable_modules/fable_library/task.py +116 -0
- arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
- arctrl/py/fable_modules/fable_library/thread.py +5 -0
- arctrl/py/fable_modules/fable_library/time_span.py +283 -0
- arctrl/py/fable_modules/fable_library/timer.py +24 -0
- arctrl/py/fable_modules/fable_library/types.py +401 -0
- arctrl/py/fable_modules/fable_library/uri.py +109 -0
- arctrl/py/fable_modules/fable_library/util.py +2735 -0
- arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
- arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
- arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
- arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
- arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
- arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
- arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
- arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
- arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
- arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +338 -0
- arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +469 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +464 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
- arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +57 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
- arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +217 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +186 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +90 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +78 -0
- arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +393 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +127 -0
- arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
- arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +218 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +180 -0
- arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +600 -0
- arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +330 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +63 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/table.py +53 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +40 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +54 -0
- arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
- arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_core/decode.py +1588 -0
- arctrl/py/fable_modules/thoth_json_core/encode.py +261 -0
- arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
- arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
- arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
- arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
- arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
- arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
- arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
- arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
- arctrl/py/fable_modules/yamlicious/encode.py +84 -0
- arctrl/py/fable_modules/yamlicious/library.py +10 -0
- arctrl/py/fable_modules/yamlicious/persil.py +57 -0
- arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
- arctrl/py/fable_modules/yamlicious/reader.py +665 -0
- arctrl/py/fable_modules/yamlicious/regex.py +21 -0
- arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +256 -0
- arctrl/py/fable_modules/yamlicious/writer.py +175 -0
- arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
- arctrl/py/json.py +213 -0
- arctrl/py/rocrate_io.py +72 -0
- arctrl/py/template_web.py +23 -0
- arctrl/py/xlsx.py +148 -0
- arctrl/rocrate.py +21 -0
- arctrl-3.0.0a3.dist-info/LICENSE +21 -0
- arctrl-3.0.0a3.dist-info/METADATA +119 -0
- arctrl-3.0.0a3.dist-info/RECORD +456 -0
- arctrl-3.0.0a3.dist-info/WHEEL +4 -0
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from __future__ import annotations
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from typing import Any
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from ..fable_modules.fable_library.date import now
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from ..fable_modules.fable_library.guid import new_guid
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from ..fable_modules.fable_library.option import default_arg
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from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, union_type, class_type)
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from ..fable_modules.fable_library.types import (Array, Union)
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from ..fable_modules.fable_library.util import (equals, safe_hash)
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from .Helper.collections_ import ResizeArray_map
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from .Helper.hash_codes import (box_hash_array, box_hash_seq, hash_date_time)
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from .Helper.sem_ver import (SemVer_tryOfString_Z721C83C5, SemVer)
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from .ontology_annotation import OntologyAnnotation
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from .person import Person
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from .Table.arc_table import ArcTable
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def _expr781() -> TypeInfo:
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return union_type("ARCtrl.Organisation", [], Organisation, lambda: [[], [("Item", string_type)]])
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class Organisation(Union):
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def __init__(self, tag: int, *fields: Any) -> None:
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super().__init__()
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self.tag: int = tag or 0
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self.fields: Array[Any] = list(fields)
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@staticmethod
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def cases() -> list[str]:
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return ["DataPLANT", "Other"]
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@staticmethod
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def of_string(str_1: str) -> Organisation:
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return Organisation(0) if (str_1.lower() == "dataplant") else Organisation(1, str_1)
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def __str__(self, __unit: None=None) -> str:
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this: Organisation = self
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return this.fields[0] if (this.tag == 1) else "DataPLANT"
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def IsOfficial(self, __unit: None=None) -> bool:
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this: Organisation = self
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return equals(this, Organisation(0))
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Organisation_reflection = _expr781
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def _expr783() -> TypeInfo:
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return class_type("ARCtrl.Template", None, Template)
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class Template:
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def __init__(self, id: str, table: ArcTable, name: str | None=None, description: str | None=None, organisation: Organisation | None=None, version: str | None=None, authors: Array[Person] | None=None, repos: Array[OntologyAnnotation] | None=None, tags: Array[OntologyAnnotation] | None=None, last_updated: Any | None=None) -> None:
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name_1: str = default_arg(name, "")
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description_1: str = default_arg(description, "")
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organisation_1: Organisation = default_arg(organisation, Organisation(1, "Custom Organisation"))
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version_1: str = default_arg(version, "0.0.0")
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authors_1: Array[Person] = default_arg(authors, [])
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repos_1: Array[OntologyAnnotation] = default_arg(repos, [])
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tags_1: Array[OntologyAnnotation] = default_arg(tags, [])
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last_updated_1: Any = default_arg(last_updated, now())
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self._Id: str = id
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self._Table: ArcTable = table
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self._Name: str = name_1
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self._Description: str = description_1
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self._Organisation: Organisation = organisation_1
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self._Version: str = version_1
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self._Authors: Array[Person] = authors_1
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self._EndpointRepositories: Array[OntologyAnnotation] = repos_1
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self._Tags: Array[OntologyAnnotation] = tags_1
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self._LastUpdated: Any = last_updated_1
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@property
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def Id(self, __unit: None=None) -> str:
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__: Template = self
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return __._Id
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@Id.setter
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def Id(self, v: str) -> None:
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__: Template = self
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__._Id = v
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@property
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def Table(self, __unit: None=None) -> ArcTable:
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__: Template = self
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return __._Table
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@Table.setter
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def Table(self, v: ArcTable) -> None:
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__: Template = self
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__._Table = v
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@property
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def Name(self, __unit: None=None) -> str:
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__: Template = self
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return __._Name
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@Name.setter
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def Name(self, v: str) -> None:
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__: Template = self
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__._Name = v
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@property
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def Description(self, __unit: None=None) -> str:
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__: Template = self
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return __._Description
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@Description.setter
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def Description(self, v: str) -> None:
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__: Template = self
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__._Description = v
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@property
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def Organisation(self, __unit: None=None) -> Organisation:
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__: Template = self
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return __._Organisation
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@Organisation.setter
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def Organisation(self, v: Organisation) -> None:
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__: Template = self
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__._Organisation = v
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@property
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def Version(self, __unit: None=None) -> str:
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__: Template = self
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return __._Version
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@Version.setter
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def Version(self, v: str) -> None:
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__: Template = self
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__._Version = v
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@property
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def Authors(self, __unit: None=None) -> Array[Person]:
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__: Template = self
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return __._Authors
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@Authors.setter
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def Authors(self, v: Array[Person]) -> None:
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__: Template = self
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__._Authors = v
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@property
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def EndpointRepositories(self, __unit: None=None) -> Array[OntologyAnnotation]:
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__: Template = self
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return __._EndpointRepositories
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@EndpointRepositories.setter
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def EndpointRepositories(self, v: Array[OntologyAnnotation]) -> None:
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__: Template = self
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__._EndpointRepositories = v
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@property
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def Tags(self, __unit: None=None) -> Array[OntologyAnnotation]:
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__: Template = self
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return __._Tags
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@Tags.setter
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def Tags(self, v: Array[OntologyAnnotation]) -> None:
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__: Template = self
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__._Tags = v
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@property
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def LastUpdated(self, __unit: None=None) -> Any:
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__: Template = self
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return __._LastUpdated
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@LastUpdated.setter
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def LastUpdated(self, v: Any) -> None:
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__: Template = self
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__._LastUpdated = v
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@staticmethod
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def make(id: str, table: ArcTable, name: str, description: str, organisation: Organisation, version: str, authors: Array[Person], repos: Array[OntologyAnnotation], tags: Array[OntologyAnnotation], last_updated: Any) -> Template:
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return Template(id, table, name, description, organisation, version, authors, repos, tags, last_updated)
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@staticmethod
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def create(id: str, table: ArcTable, name: str | None=None, description: str | None=None, organisation: Organisation | None=None, version: str | None=None, authors: Array[Person] | None=None, repos: Array[OntologyAnnotation] | None=None, tags: Array[OntologyAnnotation] | None=None, last_updated: Any | None=None) -> Template:
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return Template(id, table, name, description, organisation, version, authors, repos, tags, last_updated)
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@staticmethod
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def init(template_name: str) -> Template:
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return Template(new_guid(), ArcTable.init(template_name), template_name)
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@property
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def SemVer(self, __unit: None=None) -> SemVer | None:
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this: Template = self
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return SemVer_tryOfString_Z721C83C5(this.Version)
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def ReferenceEquals(self, other: Template) -> bool:
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this: Template = self
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return this is other
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def StructurallyEquals(self, other: Template) -> bool:
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this: Template = self
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return safe_hash(this) == safe_hash(other)
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def Copy(self, __unit: None=None) -> Template:
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this: Template = self
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def f(c: Person) -> Person:
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return c.Copy()
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next_authors: Array[Person] = ResizeArray_map(f, this.Authors)
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def f_1(c_1: OntologyAnnotation) -> OntologyAnnotation:
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return c_1.Copy()
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next_repos: Array[OntologyAnnotation] = ResizeArray_map(f_1, this.EndpointRepositories)
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def f_2(c_2: OntologyAnnotation) -> OntologyAnnotation:
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return c_2.Copy()
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next_tags: Array[OntologyAnnotation] = ResizeArray_map(f_2, this.Tags)
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return Template.create(this.Id, this.Table.Copy(), this.Name, this.Description, this.Organisation, this.Version, next_authors, next_repos, next_tags, this.LastUpdated)
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def __eq__(self, other: Any=None) -> bool:
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this: Template = self
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return this.StructurallyEquals(other) if isinstance(other, Template) else False
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|
215
|
+
def __hash__(self, __unit: None=None) -> Any:
|
|
216
|
+
this: Template = self
|
|
217
|
+
def _arrow782(__unit: None=None) -> str:
|
|
218
|
+
copy_of_struct: str = this.Id
|
|
219
|
+
return str(copy_of_struct)
|
|
220
|
+
|
|
221
|
+
return box_hash_array([_arrow782(), safe_hash(this.Table), this.Name, safe_hash(this.Organisation), this.Version, box_hash_seq(this.Authors), box_hash_seq(this.EndpointRepositories), box_hash_seq(this.Tags), hash_date_time(this.LastUpdated)])
|
|
222
|
+
|
|
223
|
+
|
|
224
|
+
Template_reflection = _expr783
|
|
225
|
+
|
|
226
|
+
def Template__ctor_Z17EA765C(id: str, table: ArcTable, name: str | None=None, description: str | None=None, organisation: Organisation | None=None, version: str | None=None, authors: Array[Person] | None=None, repos: Array[OntologyAnnotation] | None=None, tags: Array[OntologyAnnotation] | None=None, last_updated: Any | None=None) -> Template:
|
|
227
|
+
return Template(id, table, name, description, organisation, version, authors, repos, tags, last_updated)
|
|
228
|
+
|
|
229
|
+
|
|
230
|
+
__all__ = ["Organisation_reflection", "Template_reflection"]
|
|
231
|
+
|
|
@@ -0,0 +1,148 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
from typing import Any
|
|
4
|
+
from ..fable_modules.fable_library.array_ import add_range_in_place
|
|
5
|
+
from ..fable_modules.fable_library.option import default_arg
|
|
6
|
+
from ..fable_modules.fable_library.reflection import (TypeInfo, class_type)
|
|
7
|
+
from ..fable_modules.fable_library.seq import contains as contains_1
|
|
8
|
+
from ..fable_modules.fable_library.seq2 import Array_distinct
|
|
9
|
+
from ..fable_modules.fable_library.types import Array
|
|
10
|
+
from ..fable_modules.fable_library.util import (get_enumerator, dispose, equals, safe_hash, uncurry2)
|
|
11
|
+
from .Helper.collections_ import (ResizeArray_filter, ResizeArray_distinct, ResizeArray_collect, ResizeArray_append)
|
|
12
|
+
from .ontology_annotation import OntologyAnnotation
|
|
13
|
+
from .template import Template
|
|
14
|
+
|
|
15
|
+
def TemplatesAux_getComparer(match_all: bool | None=None) -> Callable[[bool, bool], bool]:
|
|
16
|
+
if default_arg(match_all, False):
|
|
17
|
+
def _arrow785(e: bool, match_all: Any=match_all) -> Callable[[bool], bool]:
|
|
18
|
+
def _arrow784(e_1: bool) -> bool:
|
|
19
|
+
return e and e_1
|
|
20
|
+
|
|
21
|
+
return _arrow784
|
|
22
|
+
|
|
23
|
+
return _arrow785
|
|
24
|
+
|
|
25
|
+
else:
|
|
26
|
+
def _arrow787(e_2: bool, match_all: Any=match_all) -> Callable[[bool], bool]:
|
|
27
|
+
def _arrow786(e_3: bool) -> bool:
|
|
28
|
+
return e_2 or e_3
|
|
29
|
+
|
|
30
|
+
return _arrow786
|
|
31
|
+
|
|
32
|
+
return _arrow787
|
|
33
|
+
|
|
34
|
+
|
|
35
|
+
|
|
36
|
+
def TemplatesAux_filterOnTags(tag_getter: Callable[[Template], Array[OntologyAnnotation]], query_tags: Array[OntologyAnnotation], comparer: Callable[[bool, bool], bool], templates: Array[Template]) -> Array[Template]:
|
|
37
|
+
def f(t: Template, tag_getter: Any=tag_getter, query_tags: Any=query_tags, comparer: Any=comparer, templates: Any=templates) -> bool:
|
|
38
|
+
template_tags: Array[OntologyAnnotation] = tag_getter(t)
|
|
39
|
+
is_valid: bool | None = None
|
|
40
|
+
enumerator: Any = get_enumerator(query_tags)
|
|
41
|
+
try:
|
|
42
|
+
while enumerator.System_Collections_IEnumerator_MoveNext():
|
|
43
|
+
class ObjectExpr788:
|
|
44
|
+
@property
|
|
45
|
+
def Equals(self) -> Callable[[OntologyAnnotation, OntologyAnnotation], bool]:
|
|
46
|
+
return equals
|
|
47
|
+
|
|
48
|
+
@property
|
|
49
|
+
def GetHashCode(self) -> Callable[[OntologyAnnotation], int]:
|
|
50
|
+
return safe_hash
|
|
51
|
+
|
|
52
|
+
contains: bool = contains_1(enumerator.System_Collections_Generic_IEnumerator_1_get_Current(), template_tags, ObjectExpr788())
|
|
53
|
+
is_valid_1: bool | None = is_valid
|
|
54
|
+
if is_valid_1 is not None:
|
|
55
|
+
maybe: bool = is_valid_1
|
|
56
|
+
is_valid = comparer(maybe, contains)
|
|
57
|
+
|
|
58
|
+
else:
|
|
59
|
+
is_valid = contains
|
|
60
|
+
|
|
61
|
+
|
|
62
|
+
finally:
|
|
63
|
+
dispose(enumerator)
|
|
64
|
+
|
|
65
|
+
return default_arg(is_valid, False)
|
|
66
|
+
|
|
67
|
+
return ResizeArray_filter(f, templates)
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
def _expr796() -> TypeInfo:
|
|
71
|
+
return class_type("ARCtrl.Templates", None, Templates)
|
|
72
|
+
|
|
73
|
+
|
|
74
|
+
class Templates:
|
|
75
|
+
@staticmethod
|
|
76
|
+
def get_distinct_tags(templates: Array[Template]) -> Array[OntologyAnnotation]:
|
|
77
|
+
def f(t: Template) -> Array[OntologyAnnotation]:
|
|
78
|
+
return t.Tags
|
|
79
|
+
|
|
80
|
+
return ResizeArray_distinct(ResizeArray_collect(f, templates))
|
|
81
|
+
|
|
82
|
+
@staticmethod
|
|
83
|
+
def get_distinct_endpoint_repositories(templates: Array[Template]) -> Array[OntologyAnnotation]:
|
|
84
|
+
def f(t: Template) -> Array[OntologyAnnotation]:
|
|
85
|
+
return t.EndpointRepositories
|
|
86
|
+
|
|
87
|
+
return ResizeArray_distinct(ResizeArray_collect(f, templates))
|
|
88
|
+
|
|
89
|
+
@staticmethod
|
|
90
|
+
def get_distinct_ontology_annotations(templates: Array[Template]) -> Array[OntologyAnnotation]:
|
|
91
|
+
oas: Array[OntologyAnnotation] = []
|
|
92
|
+
for idx in range(0, (len(templates) - 1) + 1, 1):
|
|
93
|
+
t: Template = templates[idx]
|
|
94
|
+
add_range_in_place(t.Tags, oas)
|
|
95
|
+
add_range_in_place(t.EndpointRepositories, oas)
|
|
96
|
+
class ObjectExpr789:
|
|
97
|
+
@property
|
|
98
|
+
def Equals(self) -> Callable[[OntologyAnnotation, OntologyAnnotation], bool]:
|
|
99
|
+
return equals
|
|
100
|
+
|
|
101
|
+
@property
|
|
102
|
+
def GetHashCode(self) -> Callable[[OntologyAnnotation], int]:
|
|
103
|
+
return safe_hash
|
|
104
|
+
|
|
105
|
+
return Array_distinct(list(oas), ObjectExpr789())
|
|
106
|
+
|
|
107
|
+
@staticmethod
|
|
108
|
+
def filter_by_tags(query_tags: Array[OntologyAnnotation], match_all: bool | None=None) -> Callable[[Array[Template]], Array[Template]]:
|
|
109
|
+
def _arrow791(templates: Array[Template]) -> Array[Template]:
|
|
110
|
+
def _arrow790(t: Template) -> Array[OntologyAnnotation]:
|
|
111
|
+
return t.Tags
|
|
112
|
+
|
|
113
|
+
return TemplatesAux_filterOnTags(_arrow790, query_tags, uncurry2(TemplatesAux_getComparer(match_all)), templates)
|
|
114
|
+
|
|
115
|
+
return _arrow791
|
|
116
|
+
|
|
117
|
+
@staticmethod
|
|
118
|
+
def filter_by_endpoint_repositories(query_tags: Array[OntologyAnnotation], match_all: bool | None=None) -> Callable[[Array[Template]], Array[Template]]:
|
|
119
|
+
def _arrow793(templates: Array[Template]) -> Array[Template]:
|
|
120
|
+
def _arrow792(t: Template) -> Array[OntologyAnnotation]:
|
|
121
|
+
return t.EndpointRepositories
|
|
122
|
+
|
|
123
|
+
return TemplatesAux_filterOnTags(_arrow792, query_tags, uncurry2(TemplatesAux_getComparer(match_all)), templates)
|
|
124
|
+
|
|
125
|
+
return _arrow793
|
|
126
|
+
|
|
127
|
+
@staticmethod
|
|
128
|
+
def filter_by_ontology_annotation(query_tags: Array[OntologyAnnotation], match_all: bool | None=None) -> Callable[[Array[Template]], Array[Template]]:
|
|
129
|
+
def _arrow795(templates: Array[Template]) -> Array[Template]:
|
|
130
|
+
def _arrow794(t: Template) -> Array[OntologyAnnotation]:
|
|
131
|
+
return ResizeArray_append(t.Tags, t.EndpointRepositories)
|
|
132
|
+
|
|
133
|
+
return TemplatesAux_filterOnTags(_arrow794, query_tags, uncurry2(TemplatesAux_getComparer(match_all)), templates)
|
|
134
|
+
|
|
135
|
+
return _arrow795
|
|
136
|
+
|
|
137
|
+
@staticmethod
|
|
138
|
+
def filter_by_data_plant(templates: Array[Template]) -> Array[Template]:
|
|
139
|
+
def f(t: Template) -> bool:
|
|
140
|
+
return t.Organisation.IsOfficial()
|
|
141
|
+
|
|
142
|
+
return ResizeArray_filter(f, templates)
|
|
143
|
+
|
|
144
|
+
|
|
145
|
+
Templates_reflection = _expr796
|
|
146
|
+
|
|
147
|
+
__all__ = ["TemplatesAux_getComparer", "TemplatesAux_filterOnTags", "Templates_reflection"]
|
|
148
|
+
|
arctrl/py/Core/uri.py
ADDED
arctrl/py/Core/value.py
ADDED
|
@@ -0,0 +1,188 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from typing import Any
|
|
3
|
+
from ..fable_modules.fable_library.double import try_parse as try_parse_1
|
|
4
|
+
from ..fable_modules.fable_library.int32 import try_parse
|
|
5
|
+
from ..fable_modules.fable_library.option import default_arg
|
|
6
|
+
from ..fable_modules.fable_library.reflection import (TypeInfo, int32_type, float64_type, string_type, union_type)
|
|
7
|
+
from ..fable_modules.fable_library.string_ import (to_text, printf)
|
|
8
|
+
from ..fable_modules.fable_library.types import (FSharpRef, to_string, Array, Union)
|
|
9
|
+
from ..fable_modules.fable_library.util import int32_to_string
|
|
10
|
+
from .ontology_annotation import (OntologyAnnotation, OntologyAnnotation_reflection)
|
|
11
|
+
|
|
12
|
+
def _expr525() -> TypeInfo:
|
|
13
|
+
return union_type("ARCtrl.Value", [], Value, lambda: [[("Item", OntologyAnnotation_reflection())], [("Item", int32_type)], [("Item", float64_type)], [("Item", string_type)]])
|
|
14
|
+
|
|
15
|
+
|
|
16
|
+
class Value(Union):
|
|
17
|
+
def __init__(self, tag: int, *fields: Any) -> None:
|
|
18
|
+
super().__init__()
|
|
19
|
+
self.tag: int = tag or 0
|
|
20
|
+
self.fields: Array[Any] = list(fields)
|
|
21
|
+
|
|
22
|
+
@staticmethod
|
|
23
|
+
def cases() -> list[str]:
|
|
24
|
+
return ["Ontology", "Int", "Float", "Name"]
|
|
25
|
+
|
|
26
|
+
@staticmethod
|
|
27
|
+
def from_string(value: str) -> Value:
|
|
28
|
+
match_value: tuple[bool, int]
|
|
29
|
+
out_arg: int = 0
|
|
30
|
+
def _arrow519(__unit: None=None) -> int:
|
|
31
|
+
return out_arg
|
|
32
|
+
|
|
33
|
+
def _arrow520(v: int) -> None:
|
|
34
|
+
nonlocal out_arg
|
|
35
|
+
out_arg = v or 0
|
|
36
|
+
|
|
37
|
+
match_value = (try_parse(value, 511, False, 32, FSharpRef(_arrow519, _arrow520)), out_arg)
|
|
38
|
+
if match_value[0]:
|
|
39
|
+
return Value(1, match_value[1])
|
|
40
|
+
|
|
41
|
+
else:
|
|
42
|
+
match_value_1: tuple[bool, float]
|
|
43
|
+
out_arg_1: float = 0.0
|
|
44
|
+
def _arrow521(__unit: None=None) -> float:
|
|
45
|
+
return out_arg_1
|
|
46
|
+
|
|
47
|
+
def _arrow522(v_2: float) -> None:
|
|
48
|
+
nonlocal out_arg_1
|
|
49
|
+
out_arg_1 = v_2
|
|
50
|
+
|
|
51
|
+
match_value_1 = (try_parse_1(value, FSharpRef(_arrow521, _arrow522)), out_arg_1)
|
|
52
|
+
return Value(2, match_value_1[1]) if match_value_1[0] else Value(3, value)
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
@staticmethod
|
|
56
|
+
def from_options(value: str | None=None, term_source: str | None=None, term_accesssion: str | None=None) -> Value | None:
|
|
57
|
+
def _arrow523(__unit: None=None) -> Value | None:
|
|
58
|
+
value_1: str = value
|
|
59
|
+
return Value.from_string(value_1)
|
|
60
|
+
|
|
61
|
+
return ((None if (term_accesssion is None) else Value(0, OntologyAnnotation.create(default_arg(value, ""), term_source, term_accesssion))) if (term_source is None) else Value(0, OntologyAnnotation.create(default_arg(value, ""), term_source, term_accesssion))) if (value is None) else ((_arrow523() if (term_accesssion is None) else Value(0, OntologyAnnotation.create(default_arg(value, ""), term_source, term_accesssion))) if (term_source is None) else Value(0, OntologyAnnotation.create(default_arg(value, ""), term_source, term_accesssion)))
|
|
62
|
+
|
|
63
|
+
@staticmethod
|
|
64
|
+
def to_options(value: Value) -> tuple[str | None, str | None, str | None]:
|
|
65
|
+
if value.tag == 1:
|
|
66
|
+
return (int32_to_string(value.fields[0]), None, None)
|
|
67
|
+
|
|
68
|
+
elif value.tag == 2:
|
|
69
|
+
return (to_string(value.fields[0]), None, None)
|
|
70
|
+
|
|
71
|
+
elif value.tag == 3:
|
|
72
|
+
return (value.fields[0], None, None)
|
|
73
|
+
|
|
74
|
+
else:
|
|
75
|
+
oa: OntologyAnnotation = value.fields[0]
|
|
76
|
+
return (oa.Name, oa.TermAccessionNumber, oa.TermSourceREF)
|
|
77
|
+
|
|
78
|
+
|
|
79
|
+
@property
|
|
80
|
+
def Text(self, __unit: None=None) -> str:
|
|
81
|
+
this: Value = self
|
|
82
|
+
if this.tag == 2:
|
|
83
|
+
return to_string(this.fields[0])
|
|
84
|
+
|
|
85
|
+
elif this.tag == 1:
|
|
86
|
+
return int32_to_string(this.fields[0])
|
|
87
|
+
|
|
88
|
+
elif this.tag == 3:
|
|
89
|
+
return this.fields[0]
|
|
90
|
+
|
|
91
|
+
else:
|
|
92
|
+
return this.fields[0].NameText
|
|
93
|
+
|
|
94
|
+
|
|
95
|
+
def AsName(self, __unit: None=None) -> str:
|
|
96
|
+
this: Value = self
|
|
97
|
+
if this.tag == 3:
|
|
98
|
+
return this.fields[0]
|
|
99
|
+
|
|
100
|
+
else:
|
|
101
|
+
raise Exception(("Value " + str(this)) + " is not of case name")
|
|
102
|
+
|
|
103
|
+
|
|
104
|
+
def AsInt(self, __unit: None=None) -> int:
|
|
105
|
+
this: Value = self
|
|
106
|
+
if this.tag == 1:
|
|
107
|
+
return this.fields[0]
|
|
108
|
+
|
|
109
|
+
else:
|
|
110
|
+
raise Exception(("Value " + str(this)) + " is not of case int")
|
|
111
|
+
|
|
112
|
+
|
|
113
|
+
def AsFloat(self, __unit: None=None) -> float:
|
|
114
|
+
this: Value = self
|
|
115
|
+
if this.tag == 2:
|
|
116
|
+
return this.fields[0]
|
|
117
|
+
|
|
118
|
+
else:
|
|
119
|
+
raise Exception(("Value " + str(this)) + " is not of case float")
|
|
120
|
+
|
|
121
|
+
|
|
122
|
+
def AsOntology(self, __unit: None=None) -> OntologyAnnotation:
|
|
123
|
+
this: Value = self
|
|
124
|
+
if this.tag == 0:
|
|
125
|
+
return this.fields[0]
|
|
126
|
+
|
|
127
|
+
else:
|
|
128
|
+
raise Exception(("Value " + str(this)) + " is not of case ontology")
|
|
129
|
+
|
|
130
|
+
|
|
131
|
+
@property
|
|
132
|
+
def IsAnOntology(self, __unit: None=None) -> bool:
|
|
133
|
+
this: Value = self
|
|
134
|
+
return True if (this.tag == 0) else False
|
|
135
|
+
|
|
136
|
+
@property
|
|
137
|
+
def IsNumerical(self, __unit: None=None) -> bool:
|
|
138
|
+
this: Value = self
|
|
139
|
+
if (this.tag == 1) or (this.tag == 2):
|
|
140
|
+
return True
|
|
141
|
+
|
|
142
|
+
else:
|
|
143
|
+
return False
|
|
144
|
+
|
|
145
|
+
|
|
146
|
+
@property
|
|
147
|
+
def IsAnInt(self, __unit: None=None) -> bool:
|
|
148
|
+
this: Value = self
|
|
149
|
+
return True if (this.tag == 1) else False
|
|
150
|
+
|
|
151
|
+
@property
|
|
152
|
+
def IsAFloat(self, __unit: None=None) -> bool:
|
|
153
|
+
this: Value = self
|
|
154
|
+
return True if (this.tag == 2) else False
|
|
155
|
+
|
|
156
|
+
@property
|
|
157
|
+
def IsAText(self, __unit: None=None) -> bool:
|
|
158
|
+
this: Value = self
|
|
159
|
+
return True if (this.tag == 3) else False
|
|
160
|
+
|
|
161
|
+
@staticmethod
|
|
162
|
+
def get_text(v: Value) -> str:
|
|
163
|
+
return v.Text
|
|
164
|
+
|
|
165
|
+
def Print(self, __unit: None=None) -> str:
|
|
166
|
+
this: Value = self
|
|
167
|
+
return to_string(this)
|
|
168
|
+
|
|
169
|
+
def PrintCompact(self, __unit: None=None) -> str:
|
|
170
|
+
this: Value = self
|
|
171
|
+
if this.tag == 1:
|
|
172
|
+
return to_text(printf("%i"))(this.fields[0])
|
|
173
|
+
|
|
174
|
+
elif this.tag == 2:
|
|
175
|
+
return to_text(printf("%f"))(this.fields[0])
|
|
176
|
+
|
|
177
|
+
elif this.tag == 3:
|
|
178
|
+
return this.fields[0]
|
|
179
|
+
|
|
180
|
+
else:
|
|
181
|
+
return this.fields[0].NameText
|
|
182
|
+
|
|
183
|
+
|
|
184
|
+
|
|
185
|
+
Value_reflection = _expr525
|
|
186
|
+
|
|
187
|
+
__all__ = ["Value_reflection"]
|
|
188
|
+
|
|
File without changes
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
from dataclasses import dataclass
|
|
2
|
+
from typing import Any
|
|
3
|
+
from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, class_type, record_type)
|
|
4
|
+
from ..fable_modules.fable_library.types import Record
|
|
5
|
+
|
|
6
|
+
def _expr425() -> TypeInfo:
|
|
7
|
+
return record_type("ARCtrl.FileSystem.Commit", [], Commit, lambda: [("Hash", string_type), ("UserName", string_type), ("UserEmail", string_type), ("Date", class_type("System.DateTime")), ("Message", string_type)])
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
@dataclass(eq = False, repr = False, slots = True)
|
|
11
|
+
class Commit(Record):
|
|
12
|
+
Hash: str
|
|
13
|
+
UserName: str
|
|
14
|
+
UserEmail: str
|
|
15
|
+
Date: Any
|
|
16
|
+
Message: str
|
|
17
|
+
|
|
18
|
+
Commit_reflection = _expr425
|
|
19
|
+
|
|
20
|
+
__all__ = ["Commit_reflection"]
|
|
21
|
+
|
|
@@ -0,0 +1,5 @@
|
|
|
1
|
+
|
|
2
|
+
dgi: str = "# ----- macos rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/macOS.gitignore\r\n# General\r\n.DS_Store\r\n.AppleDouble\r\n.LSOverride\r\n# Icon must end with two \\r\r\nIcon\r\n# Thumbnails\r\n._*\r\n# Files that might appear in the root of a volume\r\n.DocumentRevisions-V100\r\n.fseventsd\r\n.Spotlight-V100\r\n.TemporaryItems\r\n.Trashes\r\n.VolumeIcon.icns\r\n.com.apple.timemachine.donotpresent\r\n# Directories potentially created on remote AFP share\r\n.AppleDB\r\n.AppleDesktop\r\nNetwork Trash Folder\r\nTemporary Items\r\n.apdisk\r\n# ----- windows rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/Windows.gitignore\r\n# Windows thumbnail cache files\r\nThumbs.db\r\nThumbs.db:encryptable\r\nehthumbs.db\r\nehthumbs_vista.db\r\n# Dump file\r\n*.stackdump\r\n# Folder config file\r\n[Dd]esktop.ini\r\n# Recycle Bin used on file shares\r\n$RECYCLE.BIN/\r\n# Windows Installer files\r\n*.cab\r\n*.msi\r\n*.msix\r\n*.msm\r\n*.msp\r\n# Windows shortcuts\r\n*.lnk\r\n# ----- linux rules -----\r\n# taken from https://github.com/github/gitignore/blob/main/Global/Linux.gitignore\r\n*~\r\n# temporary files which can be created if a process still has a handle open of a deleted file\r\n.fuse_hidden*\r\n# KDE directory preferences\r\n.directory\r\n# Linux trash folder which might appear on any partition or disk\r\n.Trash-*\r\n# .nfs files are created when an open file is removed but is still being accessed\r\n.nfs*\r\n"
|
|
3
|
+
|
|
4
|
+
__all__ = ["dgi"]
|
|
5
|
+
|
|
@@ -0,0 +1,58 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
from dataclasses import dataclass
|
|
4
|
+
from ..fable_modules.fable_library.array_ import (append, map)
|
|
5
|
+
from ..fable_modules.fable_library.option import default_arg
|
|
6
|
+
from ..fable_modules.fable_library.reflection import (TypeInfo, array_type, record_type)
|
|
7
|
+
from ..fable_modules.fable_library.types import (Array, Record)
|
|
8
|
+
from .commit import (Commit, Commit_reflection)
|
|
9
|
+
from .file_system_tree import (FileSystemTree, FileSystemTree_reflection)
|
|
10
|
+
|
|
11
|
+
def _expr427() -> TypeInfo:
|
|
12
|
+
return record_type("ARCtrl.FileSystem.FileSystem", [], FileSystem, lambda: [("Tree", FileSystemTree_reflection()), ("History", array_type(Commit_reflection()))])
|
|
13
|
+
|
|
14
|
+
|
|
15
|
+
@dataclass(eq = False, repr = False, slots = True)
|
|
16
|
+
class FileSystem(Record):
|
|
17
|
+
Tree: FileSystemTree
|
|
18
|
+
History: Array[Commit]
|
|
19
|
+
@staticmethod
|
|
20
|
+
def create(tree: FileSystemTree, history: Array[Commit] | None=None) -> FileSystem:
|
|
21
|
+
return FileSystem(tree, default_arg(history, []))
|
|
22
|
+
|
|
23
|
+
def AddFile(self, path: str) -> FileSystem:
|
|
24
|
+
this: FileSystem = self
|
|
25
|
+
return FileSystem(this.Tree.AddFile(path), this.History)
|
|
26
|
+
|
|
27
|
+
@staticmethod
|
|
28
|
+
def add_file(path: str) -> Callable[[FileSystem], FileSystem]:
|
|
29
|
+
def _arrow426(fs: FileSystem) -> FileSystem:
|
|
30
|
+
return fs.AddFile(path)
|
|
31
|
+
|
|
32
|
+
return _arrow426
|
|
33
|
+
|
|
34
|
+
@staticmethod
|
|
35
|
+
def from_file_paths(paths: Array[str]) -> FileSystem:
|
|
36
|
+
tree: FileSystemTree = FileSystemTree.from_file_paths(paths)
|
|
37
|
+
return FileSystem.create(tree = tree)
|
|
38
|
+
|
|
39
|
+
def Union(self, other: FileSystem) -> FileSystem:
|
|
40
|
+
this: FileSystem = self
|
|
41
|
+
tree: FileSystemTree = this.Tree.Union(other.Tree)
|
|
42
|
+
history: Array[Commit] = append(this.History, other.History, None)
|
|
43
|
+
return FileSystem.create(tree = tree, history = history)
|
|
44
|
+
|
|
45
|
+
def Copy(self, __unit: None=None) -> FileSystem:
|
|
46
|
+
this: FileSystem = self
|
|
47
|
+
fst_copy: FileSystemTree = this.Tree.Copy()
|
|
48
|
+
def mapping(x: Commit) -> Commit:
|
|
49
|
+
return x
|
|
50
|
+
|
|
51
|
+
history_copy: Array[Commit] = map(mapping, this.History, None)
|
|
52
|
+
return FileSystem.create(tree = fst_copy, history = history_copy)
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
FileSystem_reflection = _expr427
|
|
56
|
+
|
|
57
|
+
__all__ = ["FileSystem_reflection"]
|
|
58
|
+
|