arctrl 3.0.0a3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (456) hide show
  1. arctrl/__init__.py +18 -0
  2. arctrl/py/CWL/__init__.py +0 -0
  3. arctrl/py/CWL/cwltypes.py +150 -0
  4. arctrl/py/CWL/decode.py +973 -0
  5. arctrl/py/CWL/encode.py +1 -0
  6. arctrl/py/CWL/inputs.py +88 -0
  7. arctrl/py/CWL/outputs.py +85 -0
  8. arctrl/py/CWL/requirements.py +77 -0
  9. arctrl/py/CWL/tool_description.py +103 -0
  10. arctrl/py/CWL/workflow_description.py +104 -0
  11. arctrl/py/CWL/workflow_steps.py +113 -0
  12. arctrl/py/Contract/__init__.py +0 -0
  13. arctrl/py/Contract/arc.py +60 -0
  14. arctrl/py/Contract/arc_assay.py +125 -0
  15. arctrl/py/Contract/arc_investigation.py +88 -0
  16. arctrl/py/Contract/arc_run.py +125 -0
  17. arctrl/py/Contract/arc_study.py +126 -0
  18. arctrl/py/Contract/arc_workflow.py +125 -0
  19. arctrl/py/Contract/contract.py +153 -0
  20. arctrl/py/Contract/datamap.py +372 -0
  21. arctrl/py/Contract/git.py +118 -0
  22. arctrl/py/Contract/validation_packages_config.py +107 -0
  23. arctrl/py/ContractIO/__init__.py +0 -0
  24. arctrl/py/ContractIO/contract_io.py +344 -0
  25. arctrl/py/ContractIO/file_system_helper.py +264 -0
  26. arctrl/py/Core/Helper/__init__.py +0 -0
  27. arctrl/py/Core/Helper/collections_.py +438 -0
  28. arctrl/py/Core/Helper/date_time.py +26 -0
  29. arctrl/py/Core/Helper/hash_codes.py +60 -0
  30. arctrl/py/Core/Helper/identifier.py +248 -0
  31. arctrl/py/Core/Helper/orcid.py +42 -0
  32. arctrl/py/Core/Helper/printer.py +13 -0
  33. arctrl/py/Core/Helper/regex.py +554 -0
  34. arctrl/py/Core/Helper/sem_ver.py +71 -0
  35. arctrl/py/Core/Helper/url.py +148 -0
  36. arctrl/py/Core/Process/__init__.py +0 -0
  37. arctrl/py/Core/Process/column_index.py +280 -0
  38. arctrl/py/Core/Process/component.py +200 -0
  39. arctrl/py/Core/Process/factor.py +151 -0
  40. arctrl/py/Core/Process/factor_value.py +182 -0
  41. arctrl/py/Core/Process/material.py +74 -0
  42. arctrl/py/Core/Process/material_attribute.py +95 -0
  43. arctrl/py/Core/Process/material_attribute_value.py +184 -0
  44. arctrl/py/Core/Process/material_type.py +45 -0
  45. arctrl/py/Core/Process/process.py +477 -0
  46. arctrl/py/Core/Process/process_input.py +265 -0
  47. arctrl/py/Core/Process/process_output.py +235 -0
  48. arctrl/py/Core/Process/process_parameter_value.py +200 -0
  49. arctrl/py/Core/Process/process_sequence.py +435 -0
  50. arctrl/py/Core/Process/protocol.py +175 -0
  51. arctrl/py/Core/Process/protocol_parameter.py +98 -0
  52. arctrl/py/Core/Process/sample.py +82 -0
  53. arctrl/py/Core/Process/source.py +62 -0
  54. arctrl/py/Core/Table/__init__.py +0 -0
  55. arctrl/py/Core/Table/arc_table.py +1264 -0
  56. arctrl/py/Core/Table/arc_table_aux.py +575 -0
  57. arctrl/py/Core/Table/arc_tables.py +591 -0
  58. arctrl/py/Core/Table/composite_cell.py +319 -0
  59. arctrl/py/Core/Table/composite_column.py +73 -0
  60. arctrl/py/Core/Table/composite_header.py +739 -0
  61. arctrl/py/Core/__init__.py +0 -0
  62. arctrl/py/Core/arc_types.py +5064 -0
  63. arctrl/py/Core/comment.py +128 -0
  64. arctrl/py/Core/comment_list.py +127 -0
  65. arctrl/py/Core/conversion.py +1313 -0
  66. arctrl/py/Core/data.py +245 -0
  67. arctrl/py/Core/data_context.py +157 -0
  68. arctrl/py/Core/data_file.py +112 -0
  69. arctrl/py/Core/data_map.py +225 -0
  70. arctrl/py/Core/identifier_setters.py +31 -0
  71. arctrl/py/Core/iproperty_value.py +36 -0
  72. arctrl/py/Core/ontology_annotation.py +299 -0
  73. arctrl/py/Core/ontology_source_reference.py +114 -0
  74. arctrl/py/Core/person.py +259 -0
  75. arctrl/py/Core/publication.py +161 -0
  76. arctrl/py/Core/template.py +231 -0
  77. arctrl/py/Core/templates.py +148 -0
  78. arctrl/py/Core/uri.py +11 -0
  79. arctrl/py/Core/value.py +188 -0
  80. arctrl/py/FileSystem/__init__.py +0 -0
  81. arctrl/py/FileSystem/commit.py +21 -0
  82. arctrl/py/FileSystem/default_gitattributes.py +5 -0
  83. arctrl/py/FileSystem/default_gitignore.py +5 -0
  84. arctrl/py/FileSystem/file_system.py +58 -0
  85. arctrl/py/FileSystem/file_system_tree.py +426 -0
  86. arctrl/py/FileSystem/path.py +64 -0
  87. arctrl/py/Json/DataMap/__init__.py +0 -0
  88. arctrl/py/Json/DataMap/data_context.py +101 -0
  89. arctrl/py/Json/DataMap/data_map.py +53 -0
  90. arctrl/py/Json/Process/__init__.py +0 -0
  91. arctrl/py/Json/Process/assay_materials.py +46 -0
  92. arctrl/py/Json/Process/component.py +79 -0
  93. arctrl/py/Json/Process/factor.py +107 -0
  94. arctrl/py/Json/Process/factor_value.py +101 -0
  95. arctrl/py/Json/Process/material.py +226 -0
  96. arctrl/py/Json/Process/material_attribute.py +79 -0
  97. arctrl/py/Json/Process/material_attribute_value.py +101 -0
  98. arctrl/py/Json/Process/material_type.py +53 -0
  99. arctrl/py/Json/Process/process.py +296 -0
  100. arctrl/py/Json/Process/process_input.py +83 -0
  101. arctrl/py/Json/Process/process_output.py +67 -0
  102. arctrl/py/Json/Process/process_parameter_value.py +81 -0
  103. arctrl/py/Json/Process/protocol.py +354 -0
  104. arctrl/py/Json/Process/protocol_parameter.py +79 -0
  105. arctrl/py/Json/Process/sample.py +277 -0
  106. arctrl/py/Json/Process/source.py +214 -0
  107. arctrl/py/Json/Process/study_materials.py +52 -0
  108. arctrl/py/Json/Process/value.py +56 -0
  109. arctrl/py/Json/ROCrate/__init__.py +0 -0
  110. arctrl/py/Json/ROCrate/ldcontext.py +133 -0
  111. arctrl/py/Json/ROCrate/ldgraph.py +111 -0
  112. arctrl/py/Json/ROCrate/ldnode.py +290 -0
  113. arctrl/py/Json/ROCrate/ldref.py +44 -0
  114. arctrl/py/Json/ROCrate/ldvalue.py +102 -0
  115. arctrl/py/Json/Table/__init__.py +0 -0
  116. arctrl/py/Json/Table/arc_table.py +393 -0
  117. arctrl/py/Json/Table/cell_table.py +83 -0
  118. arctrl/py/Json/Table/composite_cell.py +136 -0
  119. arctrl/py/Json/Table/composite_header.py +67 -0
  120. arctrl/py/Json/Table/iotype.py +24 -0
  121. arctrl/py/Json/Table/oatable.py +82 -0
  122. arctrl/py/Json/Table/templates.py +281 -0
  123. arctrl/py/Json/__init__.py +0 -0
  124. arctrl/py/Json/assay.py +600 -0
  125. arctrl/py/Json/comment.py +206 -0
  126. arctrl/py/Json/context/rocrate/__init__.py +0 -0
  127. arctrl/py/Json/context/rocrate/isa_assay_context.py +101 -0
  128. arctrl/py/Json/context/rocrate/isa_comment_context.py +60 -0
  129. arctrl/py/Json/context/rocrate/isa_component_context.py +77 -0
  130. arctrl/py/Json/context/rocrate/isa_data_context.py +74 -0
  131. arctrl/py/Json/context/rocrate/isa_factor_context.py +74 -0
  132. arctrl/py/Json/context/rocrate/isa_factor_value_context.py +84 -0
  133. arctrl/py/Json/context/rocrate/isa_investigation_context.py +110 -0
  134. arctrl/py/Json/context/rocrate/isa_material_attribute_context.py +64 -0
  135. arctrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +80 -0
  136. arctrl/py/Json/context/rocrate/isa_material_context.py +71 -0
  137. arctrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +68 -0
  138. arctrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +75 -0
  139. arctrl/py/Json/context/rocrate/isa_organization_context.py +55 -0
  140. arctrl/py/Json/context/rocrate/isa_person_context.py +131 -0
  141. arctrl/py/Json/context/rocrate/isa_process_context.py +94 -0
  142. arctrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +80 -0
  143. arctrl/py/Json/context/rocrate/isa_protocol_context.py +97 -0
  144. arctrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +64 -0
  145. arctrl/py/Json/context/rocrate/isa_publication_context.py +78 -0
  146. arctrl/py/Json/context/rocrate/isa_sample_context.py +65 -0
  147. arctrl/py/Json/context/rocrate/isa_source_context.py +66 -0
  148. arctrl/py/Json/context/rocrate/isa_study_context.py +125 -0
  149. arctrl/py/Json/context/rocrate/property_value_context.py +73 -0
  150. arctrl/py/Json/context/rocrate/rocrate_context.py +81 -0
  151. arctrl/py/Json/converter_options.py +23 -0
  152. arctrl/py/Json/data.py +356 -0
  153. arctrl/py/Json/data_file.py +63 -0
  154. arctrl/py/Json/decode.py +155 -0
  155. arctrl/py/Json/encode.py +92 -0
  156. arctrl/py/Json/idtable.py +44 -0
  157. arctrl/py/Json/investigation.py +695 -0
  158. arctrl/py/Json/ontology_annotation.py +404 -0
  159. arctrl/py/Json/ontology_source_reference.py +255 -0
  160. arctrl/py/Json/person.py +658 -0
  161. arctrl/py/Json/property_value.py +359 -0
  162. arctrl/py/Json/publication.py +279 -0
  163. arctrl/py/Json/string_table.py +76 -0
  164. arctrl/py/Json/study.py +793 -0
  165. arctrl/py/JsonIO/DataMap/__init__.py +0 -0
  166. arctrl/py/JsonIO/DataMap/data_map.py +53 -0
  167. arctrl/py/JsonIO/Process/__init__.py +0 -0
  168. arctrl/py/JsonIO/Process/component.py +60 -0
  169. arctrl/py/JsonIO/Process/factor.py +36 -0
  170. arctrl/py/JsonIO/Process/factor_value.py +38 -0
  171. arctrl/py/JsonIO/Process/material.py +60 -0
  172. arctrl/py/JsonIO/Process/material_attribute.py +38 -0
  173. arctrl/py/JsonIO/Process/material_attribute_value.py +60 -0
  174. arctrl/py/JsonIO/Process/material_type.py +36 -0
  175. arctrl/py/JsonIO/Process/process.py +60 -0
  176. arctrl/py/JsonIO/Process/process_input.py +38 -0
  177. arctrl/py/JsonIO/Process/process_output.py +60 -0
  178. arctrl/py/JsonIO/Process/process_parameter_value.py +60 -0
  179. arctrl/py/JsonIO/Process/process_sequence.py +71 -0
  180. arctrl/py/JsonIO/Process/protocol.py +60 -0
  181. arctrl/py/JsonIO/Process/protocol_parameter.py +36 -0
  182. arctrl/py/JsonIO/Process/sample.py +60 -0
  183. arctrl/py/JsonIO/Process/source.py +60 -0
  184. arctrl/py/JsonIO/Process/study_materials.py +52 -0
  185. arctrl/py/JsonIO/Process/value.py +32 -0
  186. arctrl/py/JsonIO/Table/__init__.py +0 -0
  187. arctrl/py/JsonIO/Table/arc_table.py +121 -0
  188. arctrl/py/JsonIO/Table/composite_cell.py +36 -0
  189. arctrl/py/JsonIO/Table/composite_header.py +36 -0
  190. arctrl/py/JsonIO/Table/compression.py +85 -0
  191. arctrl/py/JsonIO/Table/iotype.py +36 -0
  192. arctrl/py/JsonIO/Table/templates.py +113 -0
  193. arctrl/py/JsonIO/__init__.py +0 -0
  194. arctrl/py/JsonIO/assay.py +113 -0
  195. arctrl/py/JsonIO/comment.py +80 -0
  196. arctrl/py/JsonIO/data.py +60 -0
  197. arctrl/py/JsonIO/data_file.py +58 -0
  198. arctrl/py/JsonIO/decode.py +9 -0
  199. arctrl/py/JsonIO/encode.py +1 -0
  200. arctrl/py/JsonIO/investigation.py +113 -0
  201. arctrl/py/JsonIO/ldobject.py +106 -0
  202. arctrl/py/JsonIO/ontology_annotation.py +80 -0
  203. arctrl/py/JsonIO/ontology_source_reference.py +80 -0
  204. arctrl/py/JsonIO/person.py +82 -0
  205. arctrl/py/JsonIO/publication.py +82 -0
  206. arctrl/py/JsonIO/study.py +114 -0
  207. arctrl/py/ROCrate/Generic/__init__.py +0 -0
  208. arctrl/py/ROCrate/Generic/comment.py +131 -0
  209. arctrl/py/ROCrate/Generic/dataset.py +817 -0
  210. arctrl/py/ROCrate/Generic/defined_term.py +131 -0
  211. arctrl/py/ROCrate/Generic/file.py +237 -0
  212. arctrl/py/ROCrate/Generic/lab_process.py +324 -0
  213. arctrl/py/ROCrate/Generic/lab_protocol.py +338 -0
  214. arctrl/py/ROCrate/Generic/organization.py +83 -0
  215. arctrl/py/ROCrate/Generic/person.py +484 -0
  216. arctrl/py/ROCrate/Generic/postal_address.py +195 -0
  217. arctrl/py/ROCrate/Generic/property_value.py +696 -0
  218. arctrl/py/ROCrate/Generic/sample.py +202 -0
  219. arctrl/py/ROCrate/Generic/scholarly_article.py +229 -0
  220. arctrl/py/ROCrate/ISAProfile/__init__.py +0 -0
  221. arctrl/py/ROCrate/ISAProfile/assay.py +70 -0
  222. arctrl/py/ROCrate/ISAProfile/data.py +65 -0
  223. arctrl/py/ROCrate/ISAProfile/dataset.py +24 -0
  224. arctrl/py/ROCrate/ISAProfile/investigation.py +73 -0
  225. arctrl/py/ROCrate/ISAProfile/lab_process.py +162 -0
  226. arctrl/py/ROCrate/ISAProfile/lab_protocol.py +37 -0
  227. arctrl/py/ROCrate/ISAProfile/person.py +72 -0
  228. arctrl/py/ROCrate/ISAProfile/property_value.py +98 -0
  229. arctrl/py/ROCrate/ISAProfile/sample.py +64 -0
  230. arctrl/py/ROCrate/ISAProfile/scholarly_article.py +98 -0
  231. arctrl/py/ROCrate/ISAProfile/study.py +74 -0
  232. arctrl/py/ROCrate/__init__.py +0 -0
  233. arctrl/py/ROCrate/arc_rocrate_metadata.py +39 -0
  234. arctrl/py/ROCrate/dyn_obj_extensions.py +1 -0
  235. arctrl/py/ROCrate/helper.py +8 -0
  236. arctrl/py/ROCrate/ldcontext.py +362 -0
  237. arctrl/py/ROCrate/ldobject.py +1247 -0
  238. arctrl/py/ROCrate/rocrate_context.py +51 -0
  239. arctrl/py/Spreadsheet/AnnotationTable/__init__.py +0 -0
  240. arctrl/py/Spreadsheet/AnnotationTable/arc_table.py +193 -0
  241. arctrl/py/Spreadsheet/AnnotationTable/composite_cell.py +78 -0
  242. arctrl/py/Spreadsheet/AnnotationTable/composite_column.py +210 -0
  243. arctrl/py/Spreadsheet/AnnotationTable/composite_header.py +623 -0
  244. arctrl/py/Spreadsheet/DataMapTable/__init__.py +0 -0
  245. arctrl/py/Spreadsheet/DataMapTable/data_map_column.py +114 -0
  246. arctrl/py/Spreadsheet/DataMapTable/data_map_header.py +618 -0
  247. arctrl/py/Spreadsheet/DataMapTable/data_map_table.py +119 -0
  248. arctrl/py/Spreadsheet/Metadata/__init__.py +0 -0
  249. arctrl/py/Spreadsheet/Metadata/assays.py +125 -0
  250. arctrl/py/Spreadsheet/Metadata/comment.py +77 -0
  251. arctrl/py/Spreadsheet/Metadata/contacts.py +134 -0
  252. arctrl/py/Spreadsheet/Metadata/conversions.py +190 -0
  253. arctrl/py/Spreadsheet/Metadata/design_descriptors.py +34 -0
  254. arctrl/py/Spreadsheet/Metadata/factors.py +107 -0
  255. arctrl/py/Spreadsheet/Metadata/ontology_annotation.py +88 -0
  256. arctrl/py/Spreadsheet/Metadata/ontology_source_reference.py +96 -0
  257. arctrl/py/Spreadsheet/Metadata/protocols.py +146 -0
  258. arctrl/py/Spreadsheet/Metadata/publication.py +122 -0
  259. arctrl/py/Spreadsheet/Metadata/run.py +122 -0
  260. arctrl/py/Spreadsheet/Metadata/sparse_table.py +508 -0
  261. arctrl/py/Spreadsheet/Metadata/study.py +312 -0
  262. arctrl/py/Spreadsheet/Metadata/workflow.py +151 -0
  263. arctrl/py/Spreadsheet/__init__.py +0 -0
  264. arctrl/py/Spreadsheet/arc_assay.py +233 -0
  265. arctrl/py/Spreadsheet/arc_investigation.py +418 -0
  266. arctrl/py/Spreadsheet/arc_run.py +190 -0
  267. arctrl/py/Spreadsheet/arc_study.py +144 -0
  268. arctrl/py/Spreadsheet/arc_workflow.py +176 -0
  269. arctrl/py/Spreadsheet/assembly_info.py +1 -0
  270. arctrl/py/Spreadsheet/collection_aux.py +167 -0
  271. arctrl/py/Spreadsheet/data_map.py +44 -0
  272. arctrl/py/Spreadsheet/template.py +460 -0
  273. arctrl/py/ValidationPackages/__init__.py +0 -0
  274. arctrl/py/ValidationPackages/validation_package.py +82 -0
  275. arctrl/py/ValidationPackages/validation_packages_config.py +132 -0
  276. arctrl/py/WebRequest/__init__.py +0 -0
  277. arctrl/py/WebRequest/web_request.py +9 -0
  278. arctrl/py/WebRequest/web_request_py.py +135 -0
  279. arctrl/py/Yaml/__init__.py +0 -0
  280. arctrl/py/Yaml/decode.py +1 -0
  281. arctrl/py/Yaml/encode.py +10 -0
  282. arctrl/py/Yaml/validation_package.py +77 -0
  283. arctrl/py/Yaml/validation_packages_config.py +86 -0
  284. arctrl/py/__init__.py +0 -0
  285. arctrl/py/arc.py +1400 -0
  286. arctrl/py/column_index.py +280 -0
  287. arctrl/py/conversion.py +2184 -0
  288. arctrl/py/cross_async.py +76 -0
  289. arctrl/py/fable_modules/dynamic_obj/__init__.py +0 -0
  290. arctrl/py/fable_modules/dynamic_obj/dyn_obj.py +136 -0
  291. arctrl/py/fable_modules/dynamic_obj/dynamic_obj.py +415 -0
  292. arctrl/py/fable_modules/dynamic_obj/fable_js.py +1 -0
  293. arctrl/py/fable_modules/dynamic_obj/fable_py.py +288 -0
  294. arctrl/py/fable_modules/dynamic_obj/hash_codes.py +82 -0
  295. arctrl/py/fable_modules/dynamic_obj/property_helper.py +25 -0
  296. arctrl/py/fable_modules/dynamic_obj/reflection_utils.py +87 -0
  297. arctrl/py/fable_modules/fable_library/__init__.py +0 -0
  298. arctrl/py/fable_modules/fable_library/array_.py +1528 -0
  299. arctrl/py/fable_modules/fable_library/async_.py +377 -0
  300. arctrl/py/fable_modules/fable_library/async_builder.py +379 -0
  301. arctrl/py/fable_modules/fable_library/big_int.py +330 -0
  302. arctrl/py/fable_modules/fable_library/bit_converter.py +131 -0
  303. arctrl/py/fable_modules/fable_library/boolean.py +26 -0
  304. arctrl/py/fable_modules/fable_library/char.py +237 -0
  305. arctrl/py/fable_modules/fable_library/choice.py +212 -0
  306. arctrl/py/fable_modules/fable_library/date.py +779 -0
  307. arctrl/py/fable_modules/fable_library/date_offset.py +79 -0
  308. arctrl/py/fable_modules/fable_library/decimal_.py +190 -0
  309. arctrl/py/fable_modules/fable_library/diagnostics.py +54 -0
  310. arctrl/py/fable_modules/fable_library/double.py +87 -0
  311. arctrl/py/fable_modules/fable_library/encoding.py +41 -0
  312. arctrl/py/fable_modules/fable_library/event.py +206 -0
  313. arctrl/py/fable_modules/fable_library/file.py +107 -0
  314. arctrl/py/fable_modules/fable_library/fsharp_collections.py +52 -0
  315. arctrl/py/fable_modules/fable_library/fsharp_core.py +123 -0
  316. arctrl/py/fable_modules/fable_library/global_.py +63 -0
  317. arctrl/py/fable_modules/fable_library/guid.py +41 -0
  318. arctrl/py/fable_modules/fable_library/int32.py +73 -0
  319. arctrl/py/fable_modules/fable_library/list.py +1788 -0
  320. arctrl/py/fable_modules/fable_library/long.py +240 -0
  321. arctrl/py/fable_modules/fable_library/mailbox_processor.py +179 -0
  322. arctrl/py/fable_modules/fable_library/map.py +1854 -0
  323. arctrl/py/fable_modules/fable_library/map_util.py +148 -0
  324. arctrl/py/fable_modules/fable_library/mutable_map.py +397 -0
  325. arctrl/py/fable_modules/fable_library/mutable_set.py +279 -0
  326. arctrl/py/fable_modules/fable_library/native.py +45 -0
  327. arctrl/py/fable_modules/fable_library/numeric.py +46 -0
  328. arctrl/py/fable_modules/fable_library/observable.py +222 -0
  329. arctrl/py/fable_modules/fable_library/option.py +128 -0
  330. arctrl/py/fable_modules/fable_library/path.py +62 -0
  331. arctrl/py/fable_modules/fable_library/range.py +117 -0
  332. arctrl/py/fable_modules/fable_library/reflection.py +463 -0
  333. arctrl/py/fable_modules/fable_library/reg_exp.py +137 -0
  334. arctrl/py/fable_modules/fable_library/resize_array.py +31 -0
  335. arctrl/py/fable_modules/fable_library/result.py +212 -0
  336. arctrl/py/fable_modules/fable_library/seq.py +1979 -0
  337. arctrl/py/fable_modules/fable_library/seq2.py +221 -0
  338. arctrl/py/fable_modules/fable_library/set.py +2414 -0
  339. arctrl/py/fable_modules/fable_library/singleton_local_time_zone.py +36 -0
  340. arctrl/py/fable_modules/fable_library/string_.py +573 -0
  341. arctrl/py/fable_modules/fable_library/system_collections_generic.py +462 -0
  342. arctrl/py/fable_modules/fable_library/system_text.py +237 -0
  343. arctrl/py/fable_modules/fable_library/task.py +116 -0
  344. arctrl/py/fable_modules/fable_library/task_builder.py +122 -0
  345. arctrl/py/fable_modules/fable_library/thread.py +5 -0
  346. arctrl/py/fable_modules/fable_library/time_span.py +283 -0
  347. arctrl/py/fable_modules/fable_library/timer.py +24 -0
  348. arctrl/py/fable_modules/fable_library/types.py +401 -0
  349. arctrl/py/fable_modules/fable_library/uri.py +109 -0
  350. arctrl/py/fable_modules/fable_library/util.py +2735 -0
  351. arctrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  352. arctrl/py/fable_modules/fable_openpyxl/openpyxl.py +362 -0
  353. arctrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  354. arctrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +22 -0
  355. arctrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  356. arctrl/py/fable_modules/fable_python/flask/flask.py +34 -0
  357. arctrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  358. arctrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +47 -0
  359. arctrl/py/fable_modules/fable_python/jupyter/ipython.py +13 -0
  360. arctrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  361. arctrl/py/fable_modules/fable_python/stdlib/ast.py +1 -0
  362. arctrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  363. arctrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +17 -0
  364. arctrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +52 -0
  365. arctrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +38 -0
  366. arctrl/py/fable_modules/fable_python/stdlib/base64_.py +1 -0
  367. arctrl/py/fable_modules/fable_python/stdlib/builtins_.py +38 -0
  368. arctrl/py/fable_modules/fable_python/stdlib/html.py +1 -0
  369. arctrl/py/fable_modules/fable_python/stdlib/json.py +1 -0
  370. arctrl/py/fable_modules/fable_python/stdlib/math_.py +1 -0
  371. arctrl/py/fable_modules/fable_python/stdlib/os_.py +1 -0
  372. arctrl/py/fable_modules/fable_python/stdlib/queue_.py +1 -0
  373. arctrl/py/fable_modules/fable_python/stdlib/string_.py +1 -0
  374. arctrl/py/fable_modules/fable_python/stdlib/sys_.py +30 -0
  375. arctrl/py/fable_modules/fable_python/stdlib/time_.py +1 -0
  376. arctrl/py/fable_modules/fable_python/stdlib/tk_inter.py +1 -0
  377. arctrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  378. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +338 -0
  379. arctrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +469 -0
  380. arctrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  381. arctrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +214 -0
  382. arctrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +139 -0
  383. arctrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +50 -0
  384. arctrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +65 -0
  385. arctrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +9 -0
  386. arctrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +139 -0
  387. arctrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +118 -0
  388. arctrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +122 -0
  389. arctrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +464 -0
  390. arctrl/py/fable_modules/fs_spreadsheet/DSL/types.py +314 -0
  391. arctrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +106 -0
  392. arctrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  393. arctrl/py/fable_modules/fs_spreadsheet/Json/cell.py +103 -0
  394. arctrl/py/fable_modules/fs_spreadsheet/Json/column.py +70 -0
  395. arctrl/py/fable_modules/fs_spreadsheet/Json/row.py +70 -0
  396. arctrl/py/fable_modules/fs_spreadsheet/Json/table.py +57 -0
  397. arctrl/py/fable_modules/fs_spreadsheet/Json/value.py +93 -0
  398. arctrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +71 -0
  399. arctrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +217 -0
  400. arctrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  401. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +47 -0
  402. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +186 -0
  403. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +90 -0
  404. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +78 -0
  405. arctrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +48 -0
  406. arctrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  407. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +393 -0
  408. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +127 -0
  409. arctrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +23 -0
  410. arctrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  411. arctrl/py/fable_modules/fs_spreadsheet/fs_address.py +218 -0
  412. arctrl/py/fable_modules/fs_spreadsheet/fs_column.py +172 -0
  413. arctrl/py/fable_modules/fs_spreadsheet/fs_row.py +183 -0
  414. arctrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +180 -0
  415. arctrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +600 -0
  416. arctrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +330 -0
  417. arctrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  418. arctrl/py/fable_modules/fs_spreadsheet_py/cell.py +63 -0
  419. arctrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +50 -0
  420. arctrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +60 -0
  421. arctrl/py/fable_modules/fs_spreadsheet_py/json.py +47 -0
  422. arctrl/py/fable_modules/fs_spreadsheet_py/table.py +53 -0
  423. arctrl/py/fable_modules/fs_spreadsheet_py/workbook.py +40 -0
  424. arctrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +54 -0
  425. arctrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +37 -0
  426. arctrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  427. arctrl/py/fable_modules/thoth_json_core/decode.py +1588 -0
  428. arctrl/py/fable_modules/thoth_json_core/encode.py +261 -0
  429. arctrl/py/fable_modules/thoth_json_core/types.py +181 -0
  430. arctrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  431. arctrl/py/fable_modules/thoth_json_python/decode.py +112 -0
  432. arctrl/py/fable_modules/thoth_json_python/encode.py +72 -0
  433. arctrl/py/fable_modules/thoth_json_python/python.py +1 -0
  434. arctrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  435. arctrl/py/fable_modules/yamlicious/Interop/js_interop.py +1 -0
  436. arctrl/py/fable_modules/yamlicious/Interop/py_interop.py +7 -0
  437. arctrl/py/fable_modules/yamlicious/__init__.py +0 -0
  438. arctrl/py/fable_modules/yamlicious/decode.py +1784 -0
  439. arctrl/py/fable_modules/yamlicious/encode.py +84 -0
  440. arctrl/py/fable_modules/yamlicious/library.py +10 -0
  441. arctrl/py/fable_modules/yamlicious/persil.py +57 -0
  442. arctrl/py/fable_modules/yamlicious/preprocessing.py +99 -0
  443. arctrl/py/fable_modules/yamlicious/reader.py +665 -0
  444. arctrl/py/fable_modules/yamlicious/regex.py +21 -0
  445. arctrl/py/fable_modules/yamlicious/regex_active_patterns.py +256 -0
  446. arctrl/py/fable_modules/yamlicious/writer.py +175 -0
  447. arctrl/py/fable_modules/yamlicious/yamlicious_types.py +128 -0
  448. arctrl/py/json.py +213 -0
  449. arctrl/py/rocrate_io.py +72 -0
  450. arctrl/py/template_web.py +23 -0
  451. arctrl/py/xlsx.py +148 -0
  452. arctrl/rocrate.py +21 -0
  453. arctrl-3.0.0a3.dist-info/LICENSE +21 -0
  454. arctrl-3.0.0a3.dist-info/METADATA +119 -0
  455. arctrl-3.0.0a3.dist-info/RECORD +456 -0
  456. arctrl-3.0.0a3.dist-info/WHEEL +4 -0
@@ -0,0 +1 @@
1
+
@@ -0,0 +1,88 @@
1
+ from __future__ import annotations
2
+ from dataclasses import dataclass
3
+ from typing import Any
4
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
5
+ from ..fable_modules.dynamic_obj.dyn_obj import set_optional_property
6
+ from ..fable_modules.fable_library.option import value
7
+ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, option_type, int32_type, bool_type, record_type, class_type)
8
+ from ..fable_modules.fable_library.types import (Record, FSharpRef)
9
+ from .cwltypes import CWLType
10
+
11
+ def _expr3159() -> TypeInfo:
12
+ return record_type("ARCtrl.CWL.InputBinding", [], InputBinding, lambda: [("Prefix", option_type(string_type)), ("Position", option_type(int32_type)), ("ItemSeparator", option_type(string_type)), ("Separate", option_type(bool_type))])
13
+
14
+
15
+ @dataclass(eq = False, repr = False, slots = True)
16
+ class InputBinding(Record):
17
+ Prefix: str | None
18
+ Position: int | None
19
+ ItemSeparator: str | None
20
+ Separate: bool | None
21
+
22
+ InputBinding_reflection = _expr3159
23
+
24
+ def _expr3160() -> TypeInfo:
25
+ return class_type("ARCtrl.CWL.CWLInput", None, CWLInput, DynamicObj_reflection())
26
+
27
+
28
+ class CWLInput(DynamicObj):
29
+ def __init__(self, name: str, type_: CWLType | None=None, input_binding: InputBinding | None=None, optional: bool | None=None) -> None:
30
+ super().__init__()
31
+ this: FSharpRef[CWLInput] = FSharpRef(None)
32
+ self.name: str = name
33
+ this.contents = self
34
+ self.init_004014: int = 1
35
+ set_optional_property("type", type_, this.contents)
36
+ set_optional_property("inputBinding", input_binding, this.contents)
37
+ set_optional_property("optional", optional, this.contents)
38
+
39
+ @property
40
+ def Name(self, __unit: None=None) -> str:
41
+ this: CWLInput = self
42
+ return this.name
43
+
44
+ @property
45
+ def Type_(self, __unit: None=None) -> CWLType | None:
46
+ this: CWLInput = self
47
+ match_value: Any | None = this.TryGetPropertyValue("type")
48
+ if match_value is not None:
49
+ o: Any = value(match_value)
50
+ return o if isinstance(o, CWLType) else None
51
+
52
+ else:
53
+ return None
54
+
55
+
56
+ @property
57
+ def InputBinding(self, __unit: None=None) -> InputBinding | None:
58
+ this: CWLInput = self
59
+ match_value: Any | None = this.TryGetPropertyValue("inputBinding")
60
+ if match_value is not None:
61
+ o: Any = value(match_value)
62
+ return o if isinstance(o, InputBinding) else None
63
+
64
+ else:
65
+ return None
66
+
67
+
68
+ @property
69
+ def Optional(self, __unit: None=None) -> bool | None:
70
+ this: CWLInput = self
71
+ match_value: Any | None = this.TryGetPropertyValue("optional")
72
+ if match_value is not None:
73
+ o: Any = value(match_value)
74
+ return o if (str(type(o)) == "<class \'bool\'>") else None
75
+
76
+ else:
77
+ return None
78
+
79
+
80
+
81
+ CWLInput_reflection = _expr3160
82
+
83
+ def CWLInput__ctor_Z3A15BEDB(name: str, type_: CWLType | None=None, input_binding: InputBinding | None=None, optional: bool | None=None) -> CWLInput:
84
+ return CWLInput(name, type_, input_binding, optional)
85
+
86
+
87
+ __all__ = ["InputBinding_reflection", "CWLInput_reflection"]
88
+
@@ -0,0 +1,85 @@
1
+ from __future__ import annotations
2
+ from dataclasses import dataclass
3
+ from typing import Any
4
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
5
+ from ..fable_modules.dynamic_obj.dyn_obj import set_optional_property
6
+ from ..fable_modules.fable_library.option import value
7
+ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, option_type, record_type, class_type)
8
+ from ..fable_modules.fable_library.types import (Record, FSharpRef)
9
+ from .cwltypes import CWLType
10
+
11
+ def _expr3157() -> TypeInfo:
12
+ return record_type("ARCtrl.CWL.OutputBinding", [], OutputBinding, lambda: [("Glob", option_type(string_type))])
13
+
14
+
15
+ @dataclass(eq = False, repr = False, slots = True)
16
+ class OutputBinding(Record):
17
+ Glob: str | None
18
+
19
+ OutputBinding_reflection = _expr3157
20
+
21
+ def _expr3158() -> TypeInfo:
22
+ return class_type("ARCtrl.CWL.CWLOutput", None, CWLOutput, DynamicObj_reflection())
23
+
24
+
25
+ class CWLOutput(DynamicObj):
26
+ def __init__(self, name: str, type_: CWLType | None=None, output_binding: OutputBinding | None=None, output_source: str | None=None) -> None:
27
+ super().__init__()
28
+ this: FSharpRef[CWLOutput] = FSharpRef(None)
29
+ self.name: str = name
30
+ this.contents = self
31
+ self.init_004011: int = 1
32
+ set_optional_property("type", type_, this.contents)
33
+ set_optional_property("outputBinding", output_binding, this.contents)
34
+ set_optional_property("outputSource", output_source, this.contents)
35
+
36
+ @property
37
+ def Name(self, __unit: None=None) -> str:
38
+ this: CWLOutput = self
39
+ return this.name
40
+
41
+ @property
42
+ def Type_(self, __unit: None=None) -> CWLType | None:
43
+ this: CWLOutput = self
44
+ match_value: Any | None = this.TryGetPropertyValue("type")
45
+ if match_value is not None:
46
+ o: Any = value(match_value)
47
+ return o if isinstance(o, CWLType) else None
48
+
49
+ else:
50
+ return None
51
+
52
+
53
+ @property
54
+ def OutputBinding(self, __unit: None=None) -> OutputBinding | None:
55
+ this: CWLOutput = self
56
+ match_value: Any | None = this.TryGetPropertyValue("outputBinding")
57
+ if match_value is not None:
58
+ o: Any = value(match_value)
59
+ return o if isinstance(o, OutputBinding) else None
60
+
61
+ else:
62
+ return None
63
+
64
+
65
+ @property
66
+ def OutputSource(self, __unit: None=None) -> str | None:
67
+ this: CWLOutput = self
68
+ match_value: Any | None = this.TryGetPropertyValue("outputSource")
69
+ if match_value is not None:
70
+ o: Any = value(match_value)
71
+ return o if (str(type(o)) == "<class \'str\'>") else None
72
+
73
+ else:
74
+ return None
75
+
76
+
77
+
78
+ CWLOutput_reflection = _expr3158
79
+
80
+ def CWLOutput__ctor_744035D(name: str, type_: CWLType | None=None, output_binding: OutputBinding | None=None, output_source: str | None=None) -> CWLOutput:
81
+ return CWLOutput(name, type_, output_binding, output_source)
82
+
83
+
84
+ __all__ = ["OutputBinding_reflection", "CWLOutput_reflection"]
85
+
@@ -0,0 +1,77 @@
1
+ from __future__ import annotations
2
+ from dataclasses import dataclass
3
+ from typing import Any
4
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
5
+ from ..fable_modules.dynamic_obj.dyn_obj import set_optional_property
6
+ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, option_type, class_type, record_type, array_type, float64_type, union_type)
7
+ from ..fable_modules.fable_library.types import (Record, FSharpRef, Array, Union)
8
+ from .cwltypes import (SchemaDefRequirementType_reflection, SoftwarePackage_reflection, CWLType_reflection)
9
+
10
+ def _expr3142() -> TypeInfo:
11
+ return record_type("ARCtrl.CWL.DockerRequirement", [], DockerRequirement, lambda: [("DockerPull", option_type(string_type)), ("DockerFile", option_type(class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, string_type]))), ("DockerImageId", option_type(string_type))])
12
+
13
+
14
+ @dataclass(eq = False, repr = False, slots = True)
15
+ class DockerRequirement(Record):
16
+ DockerPull: str | None
17
+ DockerFile: Any | None
18
+ DockerImageId: str | None
19
+
20
+ DockerRequirement_reflection = _expr3142
21
+
22
+ def _expr3143() -> TypeInfo:
23
+ return record_type("ARCtrl.CWL.EnvironmentDef", [], EnvironmentDef, lambda: [("EnvName", string_type), ("EnvValue", string_type)])
24
+
25
+
26
+ @dataclass(eq = False, repr = False, slots = True)
27
+ class EnvironmentDef(Record):
28
+ EnvName: str
29
+ EnvValue: str
30
+
31
+ EnvironmentDef_reflection = _expr3143
32
+
33
+ def _expr3147() -> TypeInfo:
34
+ return class_type("ARCtrl.CWL.ResourceRequirementInstance", None, ResourceRequirementInstance, DynamicObj_reflection())
35
+
36
+
37
+ class ResourceRequirementInstance(DynamicObj):
38
+ def __init__(self, cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> None:
39
+ super().__init__()
40
+ this: FSharpRef[ResourceRequirementInstance] = FSharpRef(None)
41
+ this.contents = self
42
+ self.init_004024: int = 1
43
+ set_optional_property("coresMin", cores_min, this.contents)
44
+ set_optional_property("coresMax", cores_max, this.contents)
45
+ set_optional_property("ramMin", ram_min, this.contents)
46
+ set_optional_property("ramMax", ram_max, this.contents)
47
+ set_optional_property("tmpdirMin", tmpdir_min, this.contents)
48
+ set_optional_property("tmpdirMax", tmpdir_max, this.contents)
49
+ set_optional_property("outdirMin", outdir_min, this.contents)
50
+ set_optional_property("outdirMax", outdir_max, this.contents)
51
+
52
+
53
+ ResourceRequirementInstance_reflection = _expr3147
54
+
55
+ def ResourceRequirementInstance__ctor_D76FC00(cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> ResourceRequirementInstance:
56
+ return ResourceRequirementInstance(cores_min, cores_max, ram_min, ram_max, tmpdir_min, tmpdir_max, outdir_min, outdir_max)
57
+
58
+
59
+ def _expr3148() -> TypeInfo:
60
+ return union_type("ARCtrl.CWL.Requirement", [], Requirement, lambda: [[], [("Item", array_type(SchemaDefRequirementType_reflection()))], [("Item", DockerRequirement_reflection())], [("Item", array_type(SoftwarePackage_reflection()))], [("Item", array_type(CWLType_reflection()))], [("Item", array_type(EnvironmentDef_reflection()))], [], [("Item", ResourceRequirementInstance_reflection())], [], [], [], [("Item", float64_type)], [], [], [], []])
61
+
62
+
63
+ class Requirement(Union):
64
+ def __init__(self, tag: int, *fields: Any) -> None:
65
+ super().__init__()
66
+ self.tag: int = tag or 0
67
+ self.fields: Array[Any] = list(fields)
68
+
69
+ @staticmethod
70
+ def cases() -> list[str]:
71
+ return ["InlineJavascriptRequirement", "SchemaDefRequirement", "DockerRequirement", "SoftwareRequirement", "InitialWorkDirRequirement", "EnvVarRequirement", "ShellCommandRequirement", "ResourceRequirement", "WorkReuseRequirement", "NetworkAccessRequirement", "InplaceUpdateRequirement", "ToolTimeLimitRequirement", "SubworkflowFeatureRequirement", "ScatterFeatureRequirement", "MultipleInputFeatureRequirement", "StepInputExpressionRequirement"]
72
+
73
+
74
+ Requirement_reflection = _expr3148
75
+
76
+ __all__ = ["DockerRequirement_reflection", "EnvironmentDef_reflection", "ResourceRequirementInstance_reflection", "Requirement_reflection"]
77
+
@@ -0,0 +1,103 @@
1
+ from __future__ import annotations
2
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
3
+ from ..fable_modules.fable_library.option import default_arg
4
+ from ..fable_modules.fable_library.reflection import (TypeInfo, class_type)
5
+ from ..fable_modules.fable_library.types import Array
6
+ from .inputs import CWLInput
7
+ from .outputs import CWLOutput
8
+ from .requirements import Requirement
9
+
10
+ def _expr3164() -> TypeInfo:
11
+ return class_type("ARCtrl.CWL.CWLToolDescription", None, CWLToolDescription, DynamicObj_reflection())
12
+
13
+
14
+ class CWLToolDescription(DynamicObj):
15
+ def __init__(self, outputs: Array[CWLOutput], cwl_version: str | None=None, base_command: Array[str] | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, inputs: Array[CWLInput] | None=None, metadata: DynamicObj | None=None) -> None:
16
+ super().__init__()
17
+ self._cwlVersion: str = default_arg(cwl_version, "v1.2")
18
+ self._outputs: Array[CWLOutput] = outputs
19
+ self._baseCommand: Array[str] | None = base_command
20
+ self._requirements: Array[Requirement] | None = requirements
21
+ self._hints: Array[Requirement] | None = hints
22
+ self._inputs: Array[CWLInput] | None = inputs
23
+ self._metadata: DynamicObj | None = metadata
24
+
25
+ @property
26
+ def CWLVersion(self, __unit: None=None) -> str:
27
+ this: CWLToolDescription = self
28
+ return this._cwlVersion
29
+
30
+ @CWLVersion.setter
31
+ def CWLVersion(self, version: str) -> None:
32
+ this: CWLToolDescription = self
33
+ this._cwlVersion = version
34
+
35
+ @property
36
+ def Outputs(self, __unit: None=None) -> Array[CWLOutput]:
37
+ this: CWLToolDescription = self
38
+ return this._outputs
39
+
40
+ @Outputs.setter
41
+ def Outputs(self, outputs: Array[CWLOutput]) -> None:
42
+ this: CWLToolDescription = self
43
+ this._outputs = outputs
44
+
45
+ @property
46
+ def BaseCommand(self, __unit: None=None) -> Array[str] | None:
47
+ this: CWLToolDescription = self
48
+ return this._baseCommand
49
+
50
+ @BaseCommand.setter
51
+ def BaseCommand(self, base_command: Array[str] | None=None) -> None:
52
+ this: CWLToolDescription = self
53
+ this._baseCommand = base_command
54
+
55
+ @property
56
+ def Requirements(self, __unit: None=None) -> Array[Requirement] | None:
57
+ this: CWLToolDescription = self
58
+ return this._requirements
59
+
60
+ @Requirements.setter
61
+ def Requirements(self, requirements: Array[Requirement] | None=None) -> None:
62
+ this: CWLToolDescription = self
63
+ this._requirements = requirements
64
+
65
+ @property
66
+ def Hints(self, __unit: None=None) -> Array[Requirement] | None:
67
+ this: CWLToolDescription = self
68
+ return this._hints
69
+
70
+ @Hints.setter
71
+ def Hints(self, hints: Array[Requirement] | None=None) -> None:
72
+ this: CWLToolDescription = self
73
+ this._hints = hints
74
+
75
+ @property
76
+ def Inputs(self, __unit: None=None) -> Array[CWLInput] | None:
77
+ this: CWLToolDescription = self
78
+ return this._inputs
79
+
80
+ @Inputs.setter
81
+ def Inputs(self, inputs: Array[CWLInput] | None=None) -> None:
82
+ this: CWLToolDescription = self
83
+ this._inputs = inputs
84
+
85
+ @property
86
+ def Metadata(self, __unit: None=None) -> DynamicObj | None:
87
+ this: CWLToolDescription = self
88
+ return this._metadata
89
+
90
+ @Metadata.setter
91
+ def Metadata(self, metadata: DynamicObj | None=None) -> None:
92
+ this: CWLToolDescription = self
93
+ this._metadata = metadata
94
+
95
+
96
+ CWLToolDescription_reflection = _expr3164
97
+
98
+ def CWLToolDescription__ctor_Z3224DB85(outputs: Array[CWLOutput], cwl_version: str | None=None, base_command: Array[str] | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, inputs: Array[CWLInput] | None=None, metadata: DynamicObj | None=None) -> CWLToolDescription:
99
+ return CWLToolDescription(outputs, cwl_version, base_command, requirements, hints, inputs, metadata)
100
+
101
+
102
+ __all__ = ["CWLToolDescription_reflection"]
103
+
@@ -0,0 +1,104 @@
1
+ from __future__ import annotations
2
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
3
+ from ..fable_modules.fable_library.option import default_arg
4
+ from ..fable_modules.fable_library.reflection import (TypeInfo, class_type)
5
+ from ..fable_modules.fable_library.types import Array
6
+ from .inputs import CWLInput
7
+ from .outputs import CWLOutput
8
+ from .requirements import Requirement
9
+ from .workflow_steps import WorkflowStep
10
+
11
+ def _expr3169() -> TypeInfo:
12
+ return class_type("ARCtrl.CWL.CWLWorkflowDescription", None, CWLWorkflowDescription, DynamicObj_reflection())
13
+
14
+
15
+ class CWLWorkflowDescription(DynamicObj):
16
+ def __init__(self, steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> None:
17
+ super().__init__()
18
+ self._cwlVersion: str = default_arg(cwl_version, "v1.2")
19
+ self._steps: Array[WorkflowStep] = steps
20
+ self._inputs: Array[CWLInput] = inputs
21
+ self._outputs: Array[CWLOutput] = outputs
22
+ self._requirements: Array[Requirement] | None = requirements
23
+ self._hints: Array[Requirement] | None = hints
24
+ self._metadata: DynamicObj | None = metadata
25
+
26
+ @property
27
+ def CWLVersion(self, __unit: None=None) -> str:
28
+ this: CWLWorkflowDescription = self
29
+ return this._cwlVersion
30
+
31
+ @CWLVersion.setter
32
+ def CWLVersion(self, version: str) -> None:
33
+ this: CWLWorkflowDescription = self
34
+ this._cwlVersion = version
35
+
36
+ @property
37
+ def Steps(self, __unit: None=None) -> Array[WorkflowStep]:
38
+ this: CWLWorkflowDescription = self
39
+ return this._steps
40
+
41
+ @Steps.setter
42
+ def Steps(self, steps: Array[WorkflowStep]) -> None:
43
+ this: CWLWorkflowDescription = self
44
+ this._steps = steps
45
+
46
+ @property
47
+ def Inputs(self, __unit: None=None) -> Array[CWLInput]:
48
+ this: CWLWorkflowDescription = self
49
+ return this._inputs
50
+
51
+ @Inputs.setter
52
+ def Inputs(self, inputs: Array[CWLInput]) -> None:
53
+ this: CWLWorkflowDescription = self
54
+ this._inputs = inputs
55
+
56
+ @property
57
+ def Outputs(self, __unit: None=None) -> Array[CWLOutput]:
58
+ this: CWLWorkflowDescription = self
59
+ return this._outputs
60
+
61
+ @Outputs.setter
62
+ def Outputs(self, outputs: Array[CWLOutput]) -> None:
63
+ this: CWLWorkflowDescription = self
64
+ this._outputs = outputs
65
+
66
+ @property
67
+ def Requirements(self, __unit: None=None) -> Array[Requirement] | None:
68
+ this: CWLWorkflowDescription = self
69
+ return this._requirements
70
+
71
+ @Requirements.setter
72
+ def Requirements(self, requirements: Array[Requirement] | None=None) -> None:
73
+ this: CWLWorkflowDescription = self
74
+ this._requirements = requirements
75
+
76
+ @property
77
+ def Hints(self, __unit: None=None) -> Array[Requirement] | None:
78
+ this: CWLWorkflowDescription = self
79
+ return this._hints
80
+
81
+ @Hints.setter
82
+ def Hints(self, hints: Array[Requirement] | None=None) -> None:
83
+ this: CWLWorkflowDescription = self
84
+ this._hints = hints
85
+
86
+ @property
87
+ def Metadata(self, __unit: None=None) -> DynamicObj | None:
88
+ this: CWLWorkflowDescription = self
89
+ return this._metadata
90
+
91
+ @Metadata.setter
92
+ def Metadata(self, metadata: DynamicObj | None=None) -> None:
93
+ this: CWLWorkflowDescription = self
94
+ this._metadata = metadata
95
+
96
+
97
+ CWLWorkflowDescription_reflection = _expr3169
98
+
99
+ def CWLWorkflowDescription__ctor_704BBD06(steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> CWLWorkflowDescription:
100
+ return CWLWorkflowDescription(steps, inputs, outputs, cwl_version, requirements, hints, metadata)
101
+
102
+
103
+ __all__ = ["CWLWorkflowDescription_reflection"]
104
+
@@ -0,0 +1,113 @@
1
+ from __future__ import annotations
2
+ from dataclasses import dataclass
3
+ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_reflection)
4
+ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, option_type, record_type, array_type, class_type)
5
+ from ..fable_modules.fable_library.types import (Record, Array)
6
+ from .requirements import Requirement
7
+
8
+ def _expr3161() -> TypeInfo:
9
+ return record_type("ARCtrl.CWL.StepInput", [], StepInput, lambda: [("Id", string_type), ("Source", option_type(string_type)), ("DefaultValue", option_type(string_type)), ("ValueFrom", option_type(string_type))])
10
+
11
+
12
+ @dataclass(eq = False, repr = False, slots = True)
13
+ class StepInput(Record):
14
+ Id: str
15
+ Source: str | None
16
+ DefaultValue: str | None
17
+ ValueFrom: str | None
18
+
19
+ StepInput_reflection = _expr3161
20
+
21
+ def _expr3162() -> TypeInfo:
22
+ return record_type("ARCtrl.CWL.StepOutput", [], StepOutput, lambda: [("Id", array_type(string_type))])
23
+
24
+
25
+ @dataclass(eq = False, repr = False, slots = True)
26
+ class StepOutput(Record):
27
+ Id: Array[str]
28
+
29
+ StepOutput_reflection = _expr3162
30
+
31
+ def _expr3163() -> TypeInfo:
32
+ return class_type("ARCtrl.CWL.WorkflowStep", None, WorkflowStep, DynamicObj_reflection())
33
+
34
+
35
+ class WorkflowStep(DynamicObj):
36
+ def __init__(self, id: str, in_: Array[StepInput], out_: StepOutput, run: str, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None) -> None:
37
+ super().__init__()
38
+ self._id: str = id
39
+ self._in: Array[StepInput] = in_
40
+ self._out: StepOutput = out_
41
+ self._run: str = run
42
+ self._requirements: Array[Requirement] | None = requirements
43
+ self._hints: Array[Requirement] | None = hints
44
+
45
+ @property
46
+ def Id(self, __unit: None=None) -> str:
47
+ this: WorkflowStep = self
48
+ return this._id
49
+
50
+ @Id.setter
51
+ def Id(self, id: str) -> None:
52
+ this: WorkflowStep = self
53
+ this._id = id
54
+
55
+ @property
56
+ def In(self, __unit: None=None) -> Array[StepInput]:
57
+ this: WorkflowStep = self
58
+ return this._in
59
+
60
+ @In.setter
61
+ def In(self, in_: Array[StepInput]) -> None:
62
+ this: WorkflowStep = self
63
+ this._in = in_
64
+
65
+ @property
66
+ def Out(self, __unit: None=None) -> StepOutput:
67
+ this: WorkflowStep = self
68
+ return this._out
69
+
70
+ @Out.setter
71
+ def Out(self, out_: StepOutput) -> None:
72
+ this: WorkflowStep = self
73
+ this._out = out_
74
+
75
+ @property
76
+ def Run(self, __unit: None=None) -> str:
77
+ this: WorkflowStep = self
78
+ return this._run
79
+
80
+ @Run.setter
81
+ def Run(self, run: str) -> None:
82
+ this: WorkflowStep = self
83
+ this._run = run
84
+
85
+ @property
86
+ def Requirements(self, __unit: None=None) -> Array[Requirement] | None:
87
+ this: WorkflowStep = self
88
+ return this._requirements
89
+
90
+ @Requirements.setter
91
+ def Requirements(self, requirements: Array[Requirement] | None=None) -> None:
92
+ this: WorkflowStep = self
93
+ this._requirements = requirements
94
+
95
+ @property
96
+ def Hints(self, __unit: None=None) -> Array[Requirement] | None:
97
+ this: WorkflowStep = self
98
+ return this._hints
99
+
100
+ @Hints.setter
101
+ def Hints(self, hints: Array[Requirement] | None=None) -> None:
102
+ this: WorkflowStep = self
103
+ this._hints = hints
104
+
105
+
106
+ WorkflowStep_reflection = _expr3163
107
+
108
+ def WorkflowStep__ctor_4159DCB0(id: str, in_: Array[StepInput], out_: StepOutput, run: str, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None) -> WorkflowStep:
109
+ return WorkflowStep(id, in_, out_, run, requirements, hints)
110
+
111
+
112
+ __all__ = ["StepInput_reflection", "StepOutput_reflection", "WorkflowStep_reflection"]
113
+
File without changes
@@ -0,0 +1,60 @@
1
+ from __future__ import annotations
2
+ from ..fable_modules.fable_library.types import Array
3
+ from ..FileSystem.path import split as split_1
4
+ from .arc_assay import _007CAssayPath_007C__007C
5
+ from .arc_investigation import _007CInvestigationPath_007C__007C
6
+ from .arc_run import _007CRunPath_007C__007C
7
+ from .arc_study import _007CStudyPath_007C__007C
8
+ from .arc_workflow import _007CWorkflowPath_007C__007C
9
+ from .contract import (Contract, DTOType)
10
+ from .datamap import _007CDatamapPath_007C__007C
11
+
12
+ def try_isaread_contract_from_path(path: str) -> Contract | None:
13
+ split: Array[str] = split_1(path)
14
+ active_pattern_result: str | None = _007CInvestigationPath_007C__007C(split)
15
+ if active_pattern_result is not None:
16
+ p: str = active_pattern_result
17
+ return Contract.create_read(p, DTOType(4))
18
+
19
+ else:
20
+ active_pattern_result_1: str | None = _007CAssayPath_007C__007C(split)
21
+ if active_pattern_result_1 is not None:
22
+ p_1: str = active_pattern_result_1
23
+ return Contract.create_read(p_1, DTOType(0))
24
+
25
+ else:
26
+ active_pattern_result_2: str | None = _007CStudyPath_007C__007C(split)
27
+ if active_pattern_result_2 is not None:
28
+ p_2: str = active_pattern_result_2
29
+ return Contract.create_read(p_2, DTOType(1))
30
+
31
+ else:
32
+ active_pattern_result_3: str | None = _007CWorkflowPath_007C__007C(split)
33
+ if active_pattern_result_3 is not None:
34
+ p_3: str = active_pattern_result_3
35
+ return Contract.create_read(p_3, DTOType(2))
36
+
37
+ else:
38
+ active_pattern_result_4: str | None = _007CRunPath_007C__007C(split)
39
+ if active_pattern_result_4 is not None:
40
+ p_4: str = active_pattern_result_4
41
+ return Contract.create_read(p_4, DTOType(3))
42
+
43
+ else:
44
+ active_pattern_result_5: str | None = _007CDatamapPath_007C__007C(split)
45
+ if active_pattern_result_5 is not None:
46
+ p_5: str = active_pattern_result_5
47
+ return Contract.create_read(p_5, DTOType(5))
48
+
49
+ else:
50
+ return None
51
+
52
+
53
+
54
+
55
+
56
+
57
+
58
+
59
+ __all__ = ["try_isaread_contract_from_path"]
60
+