arctrl 3.0.0a3__py3-none-any.whl

arctrl/py/Json/context/rocrate/isa_source_context.py

@@ -0,0 +1,66 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.reflection import (TypeInfo, string_type, record_type)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.types import Record
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _expr1837() -> TypeInfo:
+    return record_type("ARCtrl.Json.ROCrateContext.Source.IContext", [], IContext, lambda: [("sdo", string_type), ("arc", string_type), ("Source", string_type), ("ArcSource", string_type), ("identifier", string_type), ("characteristics", string_type), ("name", string_type)])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class IContext(Record):
+    sdo: str
+    arc: str
+    Source: str
+    ArcSource: str
+    identifier: str
+    characteristics: str
+    name: str
+
+IContext_reflection = _expr1837
+
+def _arrow1844(__unit: None=None) -> IEncodable:
+    class ObjectExpr1838(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr1839(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("https://bioschemas.org/")
+
+    class ObjectExpr1840(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("bio:Sample")
+
+    class ObjectExpr1841(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:name")
+
+    class ObjectExpr1842(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("bio:additionalProperty")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr1838()), ("bio", ObjectExpr1839()), ("Source", ObjectExpr1840()), ("name", ObjectExpr1841()), ("characteristics", ObjectExpr1842())])
+    class ObjectExpr1843(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_5))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_5.encode_object(arg)
+
+    return ObjectExpr1843()
+
+
+context_jsonvalue: IEncodable = _arrow1844()
+
+context_str: str = "\r\n{\r\n  \"@context\": {\r\n    \"sdo\": \"http://schema.org/\",\r\n    \"arc\": \"http://purl.org/nfdi4plants/ontology/\",\r\n\r\n    \"Source\": \"sdo:Thing\",\r\n    \"ArcSource\": \"arc:ARC#ARC_00000071\",\r\n\r\n    \"identifier\": \"sdo:identifier\",\r\n\r\n    \"name\": \"arc:ARC#ARC_00000019\",\r\n    \"characteristics\": \"arc:ARC#ARC_00000080\"\r\n  }\r\n}\r\n    "
+
+__all__ = ["IContext_reflection", "context_jsonvalue", "context_str"]
+

arctrl/py/Json/context/rocrate/isa_study_context.py

@@ -0,0 +1,125 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.reflection import (TypeInfo, string_type, record_type)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.types import Record
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _expr1845() -> TypeInfo:
+    return record_type("ARCtrl.Json.ROCrateContext.Study.IContext", [], IContext, lambda: [("sdo", string_type), ("arc", string_type), ("Study", string_type), ("ArcStudy", string_type), ("identifier", string_type), ("title", string_type), ("description", string_type), ("submission_date", string_type), ("public_release_date", string_type), ("publications", string_type), ("people", string_type), ("assays", string_type), ("filename", string_type), ("comments", string_type), ("protocols", string_type), ("materials", string_type), ("other_materials", string_type), ("sources", string_type), ("samples", string_type), ("process_sequence", string_type), ("factors", string_type), ("characteristic_categories", string_type), ("unit_categories", string_type), ("study_design_descriptors", string_type)])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class IContext(Record):
+    sdo: str
+    arc: str
+    Study: str
+    ArcStudy: str
+    identifier: str
+    title: str
+    description: str
+    submission_date: str
+    public_release_date: str
+    publications: str
+    people: str
+    assays: str
+    filename: str
+    comments: str
+    protocols: str
+    materials: str
+    other_materials: str
+    sources: str
+    samples: str
+    process_sequence: str
+    factors: str
+    characteristic_categories: str
+    unit_categories: str
+    study_design_descriptors: str
+
+IContext_reflection = _expr1845
+
+def _arrow1863(__unit: None=None) -> IEncodable:
+    class ObjectExpr1846(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr1847(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("sdo:Dataset")
+
+    class ObjectExpr1848(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("sdo:identifier")
+
+    class ObjectExpr1849(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:headline")
+
+    class ObjectExpr1850(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("sdo:additionalType")
+
+    class ObjectExpr1851(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_5.encode_string("sdo:description")
+
+    class ObjectExpr1852(IEncodable):
+        def Encode(self, helpers_6: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_6.encode_string("sdo:dateCreated")
+
+    class ObjectExpr1853(IEncodable):
+        def Encode(self, helpers_7: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_7.encode_string("sdo:datePublished")
+
+    class ObjectExpr1854(IEncodable):
+        def Encode(self, helpers_8: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_8.encode_string("sdo:citation")
+
+    class ObjectExpr1855(IEncodable):
+        def Encode(self, helpers_9: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_9.encode_string("sdo:creator")
+
+    class ObjectExpr1856(IEncodable):
+        def Encode(self, helpers_10: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_10.encode_string("sdo:hasPart")
+
+    class ObjectExpr1857(IEncodable):
+        def Encode(self, helpers_11: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_11.encode_string("sdo:hasPart")
+
+    class ObjectExpr1858(IEncodable):
+        def Encode(self, helpers_12: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_12.encode_string("sdo:alternateName")
+
+    class ObjectExpr1859(IEncodable):
+        def Encode(self, helpers_13: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_13.encode_string("sdo:comment")
+
+    class ObjectExpr1860(IEncodable):
+        def Encode(self, helpers_14: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_14.encode_string("sdo:about")
+
+    class ObjectExpr1861(IEncodable):
+        def Encode(self, helpers_15: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_15.encode_string("arc:ARC#ARC_00000037")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr1846()), ("Study", ObjectExpr1847()), ("identifier", ObjectExpr1848()), ("title", ObjectExpr1849()), ("additionalType", ObjectExpr1850()), ("description", ObjectExpr1851()), ("submissionDate", ObjectExpr1852()), ("publicReleaseDate", ObjectExpr1853()), ("publications", ObjectExpr1854()), ("people", ObjectExpr1855()), ("assays", ObjectExpr1856()), ("dataFiles", ObjectExpr1857()), ("filename", ObjectExpr1858()), ("comments", ObjectExpr1859()), ("processSequence", ObjectExpr1860()), ("studyDesignDescriptors", ObjectExpr1861())])
+    class ObjectExpr1862(IEncodable):
+        def Encode(self, helpers_16: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_16))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_16.encode_object(arg)
+
+    return ObjectExpr1862()
+
+
+context_jsonvalue: IEncodable = _arrow1863()
+
+__all__ = ["IContext_reflection", "context_jsonvalue"]
+

arctrl/py/Json/context/rocrate/property_value_context.py

@@ -0,0 +1,73 @@
+from __future__ import annotations
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _arrow1610(__unit: None=None) -> IEncodable:
+    class ObjectExpr1597(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr1598(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("sdo:additionalType")
+
+    class ObjectExpr1599(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("sdo:alternateName")
+
+    class ObjectExpr1600(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:measurementMethod")
+
+    class ObjectExpr1601(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("sdo:description")
+
+    class ObjectExpr1602(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_5.encode_string("sdo:name")
+
+    class ObjectExpr1603(IEncodable):
+        def Encode(self, helpers_6: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_6.encode_string("sdo:propertyID")
+
+    class ObjectExpr1604(IEncodable):
+        def Encode(self, helpers_7: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_7.encode_string("sdo:value")
+
+    class ObjectExpr1605(IEncodable):
+        def Encode(self, helpers_8: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_8.encode_string("sdo:valueReference")
+
+    class ObjectExpr1606(IEncodable):
+        def Encode(self, helpers_9: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_9.encode_string("sdo:unitText")
+
+    class ObjectExpr1607(IEncodable):
+        def Encode(self, helpers_10: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_10.encode_string("sdo:unitCode")
+
+    class ObjectExpr1608(IEncodable):
+        def Encode(self, helpers_11: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_11.encode_string("sdo:disambiguatingDescription")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr1597()), ("additionalType", ObjectExpr1598()), ("alternateName", ObjectExpr1599()), ("measurementMethod", ObjectExpr1600()), ("description", ObjectExpr1601()), ("category", ObjectExpr1602()), ("categoryCode", ObjectExpr1603()), ("value", ObjectExpr1604()), ("valueCode", ObjectExpr1605()), ("unit", ObjectExpr1606()), ("unitCode", ObjectExpr1607()), ("comments", ObjectExpr1608())])
+    class ObjectExpr1609(IEncodable):
+        def Encode(self, helpers_12: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_12))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_12.encode_object(arg)
+
+    return ObjectExpr1609()
+
+
+context_jsonvalue: IEncodable = _arrow1610()
+
+__all__ = ["context_jsonvalue"]
+

arctrl/py/Json/context/rocrate/rocrate_context.py

@@ -0,0 +1,81 @@
+from __future__ import annotations
+from dataclasses import dataclass
+from typing import (Any, TypeVar)
+from ....fable_modules.fable_library.reflection import (TypeInfo, string_type, record_type)
+from ....fable_modules.fable_library.seq import map
+from ....fable_modules.fable_library.types import Record
+from ....fable_modules.fable_library.util import (to_enumerable, IEnumerable_1)
+from ....fable_modules.thoth_json_core.types import (IEncodable, IEncoderHelpers_1)
+
+__A_ = TypeVar("__A_")
+
+def _expr1864() -> TypeInfo:
+    return record_type("ARCtrl.Json.ROCrateContext.ROCrate.IContext", [], IContext, lambda: [("sdo", string_type), ("arc", string_type), ("CreativeWork", string_type), ("about", string_type), ("conforms_to", string_type)])
+
+
+@dataclass(eq = False, repr = False, slots = True)
+class IContext(Record):
+    sdo: str
+    arc: str
+    CreativeWork: str
+    about: str
+    conforms_to: str
+
+IContext_reflection = _expr1864
+
+def _arrow1867(__unit: None=None) -> IEncodable:
+    class ObjectExpr1865(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("https://w3id.org/ro/crate/1.1")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("@id", ObjectExpr1865())])
+    class ObjectExpr1866(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_1))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_1.encode_object(arg)
+
+    return ObjectExpr1866()
+
+
+conforms_to_jsonvalue: IEncodable = _arrow1867()
+
+def _arrow1874(__unit: None=None) -> IEncodable:
+    class ObjectExpr1868(IEncodable):
+        def Encode(self, helpers: IEncoderHelpers_1[Any]) -> Any:
+            return helpers.encode_string("http://schema.org/")
+
+    class ObjectExpr1869(IEncodable):
+        def Encode(self, helpers_1: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_1.encode_string("http://purl.org/nfdi4plants/ontology/")
+
+    class ObjectExpr1870(IEncodable):
+        def Encode(self, helpers_2: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_2.encode_string("sdo:CreativeWork")
+
+    class ObjectExpr1871(IEncodable):
+        def Encode(self, helpers_3: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_3.encode_string("sdo:about")
+
+    class ObjectExpr1872(IEncodable):
+        def Encode(self, helpers_4: IEncoderHelpers_1[Any]) -> Any:
+            return helpers_4.encode_string("http://purl.org/dc/terms/conformsTo")
+
+    values: IEnumerable_1[tuple[str, IEncodable]] = to_enumerable([("sdo", ObjectExpr1868()), ("arc", ObjectExpr1869()), ("CreativeWork", ObjectExpr1870()), ("about", ObjectExpr1871()), ("conformsTo", ObjectExpr1872())])
+    class ObjectExpr1873(IEncodable):
+        def Encode(self, helpers_5: IEncoderHelpers_1[Any]) -> Any:
+            def mapping(tupled_arg: tuple[str, IEncodable]) -> tuple[str, __A_]:
+                return (tupled_arg[0], tupled_arg[1].Encode(helpers_5))
+
+            arg: IEnumerable_1[tuple[str, __A_]] = map(mapping, values)
+            return helpers_5.encode_object(arg)
+
+    return ObjectExpr1873()
+
+
+context_jsonvalue: IEncodable = _arrow1874()
+
+__all__ = ["IContext_reflection", "conforms_to_jsonvalue", "context_jsonvalue"]
+

arctrl/py/Json/converter_options.py

@@ -0,0 +1,23 @@
+from typing import Any
+from ..fable_modules.fable_library.reflection import (TypeInfo, union_type)
+from ..fable_modules.fable_library.types import (Array, Union)
+
+def _expr1875() -> TypeInfo:
+    return union_type("ARCtrl.Json.ConverterOptions", [], ConverterOptions, lambda: [[], [], []])
+
+
+class ConverterOptions(Union):
+    def __init__(self, tag: int, *fields: Any) -> None:
+        super().__init__()
+        self.tag: int = tag or 0
+        self.fields: Array[Any] = list(fields)
+
+    @staticmethod
+    def cases() -> list[str]:
+        return ["ARCtrl", "ROCrate", "ISAJson"]
+
+
+ConverterOptions_reflection = _expr1875
+
+__all__ = ["ConverterOptions_reflection"]
+