@saibolla/ada 0.1.2

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Files changed (1432) hide show
  1. package/.ada/SYSTEM.md +81 -0
  2. package/.ada/agents/researcher.md +69 -0
  3. package/.ada/agents/reviewer.md +92 -0
  4. package/.ada/agents/verifier.md +45 -0
  5. package/.ada/agents/writer.md +54 -0
  6. package/.ada/settings.json +32 -0
  7. package/.ada/themes/ada.json +85 -0
  8. package/.env.example +31 -0
  9. package/AGENTS.md +79 -0
  10. package/LICENSE +191 -0
  11. package/README.md +188 -0
  12. package/bin/ada.js +26 -0
  13. package/dist/bootstrap/sync.js +143 -0
  14. package/dist/cli.js +404 -0
  15. package/dist/config/paths.js +32 -0
  16. package/dist/index.js +10 -0
  17. package/dist/model/catalog.js +255 -0
  18. package/dist/model/commands.js +180 -0
  19. package/dist/pi/launch.js +33 -0
  20. package/dist/pi/package-presets.js +55 -0
  21. package/dist/pi/runtime.js +81 -0
  22. package/dist/pi/settings.js +108 -0
  23. package/dist/pi/web-access.js +74 -0
  24. package/dist/search/commands.js +12 -0
  25. package/dist/setup/doctor.js +126 -0
  26. package/dist/setup/preview.js +117 -0
  27. package/dist/setup/prompts.js +34 -0
  28. package/dist/setup/setup.js +98 -0
  29. package/dist/setup/update.js +133 -0
  30. package/dist/system/executables.js +38 -0
  31. package/dist/system/node-version.js +31 -0
  32. package/dist/system/open-url.js +35 -0
  33. package/dist/system/promise-polyfill.js +12 -0
  34. package/dist/ui/terminal.js +64 -0
  35. package/dist/web/launch.js +48 -0
  36. package/dist/web-search.js +1 -0
  37. package/extensions/docparser/constants.ts +62 -0
  38. package/extensions/docparser/deps.ts +584 -0
  39. package/extensions/docparser/doctor.ts +353 -0
  40. package/extensions/docparser/index.ts +9 -0
  41. package/extensions/docparser/input.ts +230 -0
  42. package/extensions/docparser/request.ts +67 -0
  43. package/extensions/docparser/schema.ts +82 -0
  44. package/extensions/docparser/tool.ts +305 -0
  45. package/extensions/docparser/types.ts +99 -0
  46. package/extensions/research-tools/alpha.ts +107 -0
  47. package/extensions/research-tools/header.ts +284 -0
  48. package/extensions/research-tools/help.ts +93 -0
  49. package/extensions/research-tools/project-scaffold.ts +64 -0
  50. package/extensions/research-tools/project.ts +123 -0
  51. package/extensions/research-tools/shared.ts +16 -0
  52. package/extensions/research-tools.ts +42 -0
  53. package/logo.d.mts +3 -0
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  55. package/metadata/commands.d.mts +46 -0
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  63. package/prompts/jobs.md +16 -0
  64. package/prompts/litreview.md +18 -0
  65. package/prompts/log.md +14 -0
  66. package/prompts/replicate.md +24 -0
  67. package/prompts/review.md +18 -0
  68. package/prompts/watch.md +16 -0
  69. package/scripts/build-native-bundle.mjs +349 -0
  70. package/scripts/check-node-version.mjs +35 -0
  71. package/scripts/patch-embedded-pi.mjs +588 -0
  72. package/scripts/prepare-runtime-workspace.mjs +162 -0
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+ # Clinical Decision Algorithms Guide
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+
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+ ## Overview
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+
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+ Clinical decision algorithms provide systematic, step-by-step guidance for diagnosis, treatment selection, and patient management. This guide covers algorithm development, validation, and visual presentation using decision trees and flowcharts.
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+
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+ ## Algorithm Design Principles
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+
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+ ### Key Components
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+
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+ **Decision Nodes**
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+ - **Question/Criteria**: Clear, measurable clinical parameter
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+ - **Binary vs Multi-Way**: Yes/no (simple) vs multiple options (complex)
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+ - **Objective**: Lab value, imaging finding vs Subjective: Clinical judgment
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+
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+ **Action Nodes**
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+ - **Treatment**: Specific intervention with dosing
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+ - **Test**: Additional diagnostic procedure
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+ - **Referral**: Specialist consultation, higher level of care
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+ - **Observation**: Watchful waiting with defined follow-up
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+
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+ **Terminal Nodes**
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+ - **Outcome**: Final decision point
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+ - **Follow-up**: Schedule for reassessment
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+ - **Exit criteria**: When to exit algorithm
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+
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+ ### Design Criteria
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+
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+ **Clarity**
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+ - Unambiguous decision points
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+ - Mutually exclusive pathways
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+ - No circular loops (unless intentional reassessment cycles)
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+ - Clear entry and exit points
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+
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+ **Clinical Validity**
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+ - Evidence-based decision criteria
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+ - Validated cut-points for biomarkers
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+ - Guideline-concordant recommendations
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+ - Expert consensus where evidence limited
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+
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+ **Usability**
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+ - Maximum 7 decision points per pathway (cognitive load)
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+ - Visual hierarchy (most common path highlighted)
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+ - Printable single-page format preferred
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+ - Color coding for urgency/safety
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+
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+ **Completeness**
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+ - All possible scenarios covered
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+ - Default pathway for edge cases
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+ - Safety-net provisions for unusual presentations
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+ - Escalation criteria clearly stated
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+
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+ ## Clinical Decision Trees
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+
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+ ### Diagnostic Algorithms
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+
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+ **Chest Pain Evaluation Algorithm**
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+
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+ ```
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+ Entry: Patient with chest pain
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+
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+ ├─ STEMI Criteria? (ST elevation ≥1mm in ≥2 contiguous leads)
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+ │ ├─ YES → Activate cath lab, aspirin 325mg, heparin, clopidogrel 600mg
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+ │ │ Transfer for primary PCI (goal door-to-balloon <90 minutes)
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+ │ └─ NO → Continue evaluation
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+
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+ ├─ High-Risk Features? (Hemodynamic instability, arrhythmia, troponin elevation)
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+ │ ├─ YES → Admit CCU, serial troponins, cardiology consultation
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+ │ │ Consider early angiography if NSTEMI
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+ │ └─ NO → Calculate TIMI or HEART score
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+
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+ ├─ TIMI Score 0-1 or HEART Score 0-3? (Low risk)
73
+ │ ├─ YES → Observe 6-12 hours, serial troponins, stress test if negative
74
+ │ │ Discharge if all negative with cardiology follow-up in 72 hours
75
+ │ └─ NO → TIMI 2-4 or HEART 4-6 (Intermediate risk)
76
+
77
+ ├─ TIMI Score 2-4 or HEART Score 4-6? (Intermediate risk)
78
+ │ ├─ YES → Admit telemetry, serial troponins, stress imaging vs CT angiography
79
+ │ │ Medical management: Aspirin, statin, beta-blocker
80
+ │ └─ NO → TIMI ≥5 or HEART ≥7 (High risk) → Treat as NSTEMI
81
+
82
+ Decision Endpoint: Risk-stratified pathway with 30-day event rate documented
83
+ ```
84
+
85
+ **Pulmonary Embolism Diagnostic Algorithm (Wells Criteria)**
86
+
87
+ ```
88
+ Entry: Suspected PE
89
+
90
+ Step 1: Calculate Wells Score
91
+ Clinical features points:
92
+ - Clinical signs of DVT: 3 points
93
+ - PE more likely than alternative diagnosis: 3 points
94
+ - Heart rate >100: 1.5 points
95
+ - Immobilization/surgery in past 4 weeks: 1.5 points
96
+ - Previous PE/DVT: 1.5 points
97
+ - Hemoptysis: 1 point
98
+ - Malignancy: 1 point
99
+
100
+ Step 2: Risk Stratify
101
+ ├─ Wells Score ≤4 (PE unlikely)
102
+ │ └─ D-dimer test
103
+ │ ├─ D-dimer negative (<500 ng/mL) → PE excluded, consider alternative diagnosis
104
+ │ └─ D-dimer positive (≥500 ng/mL) → CTPA
105
+
106
+ └─ Wells Score >4 (PE likely)
107
+ └─ CTPA (skip D-dimer)
108
+
109
+ Step 3: CTPA Results
110
+ ├─ Positive for PE → Risk stratify severity
111
+ │ ├─ Massive PE (hypotension, shock) → Thrombolytics vs embolectomy
112
+ │ ├─ Submassive PE (RV strain, troponin+) → Admit ICU, consider thrombolytics
113
+ │ └─ Low-risk PE → Anticoagulation, consider outpatient management
114
+
115
+ └─ Negative for PE → PE excluded, investigate alternative diagnosis
116
+
117
+ Step 4: Treatment Decision (if PE confirmed)
118
+ ├─ Absolute contraindication to anticoagulation?
119
+ │ ├─ YES → IVC filter placement, treat underlying condition
120
+ │ └─ NO → Anticoagulation therapy
121
+
122
+ ├─ Cancer-associated thrombosis?
123
+ │ ├─ YES → LMWH preferred (edoxaban alternative)
124
+ │ └─ NO → DOAC preferred (apixaban, rivaroxaban, edoxaban)
125
+
126
+ └─ Duration: Minimum 3 months, extended if unprovoked or recurrent
127
+ ```
128
+
129
+ ### Treatment Selection Algorithms
130
+
131
+ **NSCLC First-Line Treatment Algorithm**
132
+
133
+ ```
134
+ Entry: Advanced/Metastatic NSCLC, adequate PS (ECOG 0-2)
135
+
136
+ Step 1: Biomarker Testing Complete?
137
+ ├─ NO → Reflex testing: EGFR, ALK, ROS1, BRAF, PD-L1, consider NGS
138
+ │ Hold systemic therapy pending results (unless rapidly progressive)
139
+ └─ YES → Proceed to Step 2
140
+
141
+ Step 2: Actionable Genomic Alteration?
142
+ ├─ EGFR exon 19 deletion or L858R → Osimertinib 80mg daily
143
+ │ └─ Alternative: Erlotinib, gefitinib, afatinib (less preferred)
144
+
145
+ ├─ ALK rearrangement → Alectinib 600mg BID
146
+ │ └─ Alternatives: Brigatinib, lorlatinib, crizotinib (less preferred)
147
+
148
+ ├─ ROS1 rearrangement → Crizotinib 250mg BID or entrectinib
149
+
150
+ ├─ BRAF V600E → Dabrafenib + trametinib
151
+
152
+ ├─ MET exon 14 skipping → Capmatinib or tepotinib
153
+
154
+ ├─ RET rearrangement → Selpercatinib or pralsetinib
155
+
156
+ ├─ NTRK fusion → Larotrectinib or entrectinib
157
+
158
+ ├─ KRAS G12C → Sotorasib or adagrasib (if no other options)
159
+
160
+ └─ NO actionable alteration → Proceed to Step 3
161
+
162
+ Step 3: PD-L1 Testing Result?
163
+ ├─ PD-L1 ≥50% (TPS)
164
+ │ ├─ Option 1: Pembrolizumab 200mg Q3W (monotherapy, NCCN Category 1)
165
+ │ ├─ Option 2: Pembrolizumab + platinum doublet chemotherapy
166
+ │ └─ Option 3: Atezolizumab + bevacizumab + carboplatin + paclitaxel
167
+
168
+ ├─ PD-L1 1-49% (TPS)
169
+ │ ├─ Preferred: Pembrolizumab + platinum doublet chemotherapy
170
+ │ └─ Alternative: Platinum doublet chemotherapy alone
171
+
172
+ └─ PD-L1 <1% (TPS)
173
+ ├─ Preferred: Pembrolizumab + platinum doublet chemotherapy
174
+ └─ Alternative: Platinum doublet chemotherapy ± bevacizumab
175
+
176
+ Step 4: Platinum Doublet Selection (if applicable)
177
+ ├─ Squamous histology
178
+ │ └─ Carboplatin AUC 6 + paclitaxel 200 mg/m² Q3W (4 cycles)
179
+ │ or Carboplatin AUC 5 + nab-paclitaxel 100 mg/m² D1,8,15 Q4W
180
+
181
+ └─ Non-squamous histology
182
+ └─ Carboplatin AUC 6 + pemetrexed 500 mg/m² Q3W (4 cycles)
183
+ Continue pemetrexed maintenance if responding
184
+ Add bevacizumab 15 mg/kg if eligible (no hemoptysis, brain mets)
185
+
186
+ Step 5: Monitoring and Response Assessment
187
+ - Imaging every 6 weeks for first 12 weeks, then every 9 weeks
188
+ - Continue until progression or unacceptable toxicity
189
+ - At progression, proceed to second-line algorithm
190
+ ```
191
+
192
+ **Heart Failure Management Algorithm (AHA/ACC Guidelines)**
193
+
194
+ ```
195
+ Entry: Heart Failure Diagnosis Confirmed
196
+
197
+ Step 1: Determine HF Type
198
+ ├─ HFrEF (EF ≤40%)
199
+ │ └─ Proceed to Guideline-Directed Medical Therapy (GDMT)
200
+
201
+ ├─ HFpEF (EF ≥50%)
202
+ │ └─ Treat comorbidities, diuretics for congestion, consider SGLT2i
203
+
204
+ └─ HFmrEF (EF 41-49%)
205
+ └─ Consider HFrEF GDMT, evidence less robust
206
+
207
+ Step 2: GDMT for HFrEF (All patients unless contraindicated)
208
+
209
+ Quadruple Therapy (Class 1 recommendations):
210
+
211
+ 1. ACE Inhibitor/ARB/ARNI
212
+ ├─ Preferred: Sacubitril-valsartan 49/51mg BID → titrate to 97/103mg BID
213
+ │ └─ If ACE-I naïve or taking <10mg enalapril equivalent
214
+ ├─ Alternative: ACE-I (enalapril, lisinopril, ramipril) to target dose
215
+ └─ Alternative: ARB (losartan, valsartan) if ACE-I intolerant
216
+
217
+ 2. Beta-Blocker (start low, titrate slowly)
218
+ ├─ Bisoprolol 1.25mg daily → 10mg daily target
219
+ ├─ Metoprolol succinate 12.5mg daily → 200mg daily target
220
+ └─ Carvedilol 3.125mg BID → 25mg BID target (50mg BID if >85kg)
221
+
222
+ 3. Mineralocorticoid Receptor Antagonist (MRA)
223
+ ├─ Spironolactone 12.5-25mg daily → 50mg daily target
224
+ └─ Eplerenone 25mg daily → 50mg daily target
225
+ └─ Contraindications: K >5.0, CrCl <30 mL/min
226
+
227
+ 4. SGLT2 Inhibitor (regardless of diabetes status)
228
+ ├─ Dapagliflozin 10mg daily
229
+ └─ Empagliflozin 10mg daily
230
+
231
+ Step 3: Additional Therapies Based on Phenotype
232
+
233
+ ├─ Sinus rhythm + HR ≥70 despite beta-blocker?
234
+ │ └─ YES: Add ivabradine 5mg BID → 7.5mg BID target
235
+
236
+ ├─ African American + NYHA III-IV?
237
+ │ └─ YES: Add hydralazine 37.5mg TID + isosorbide dinitrate 20mg TID
238
+ │ (Target: hydralazine 75mg TID + ISDN 40mg TID)
239
+
240
+ ├─ Atrial fibrillation?
241
+ │ ├─ Rate control (target <80 bpm at rest, <110 bpm with activity)
242
+ │ └─ Anticoagulation (DOAC preferred, warfarin if valvular)
243
+
244
+ └─ Iron deficiency (ferritin <100 or <300 with TSAT <20%)?
245
+ └─ YES: IV iron supplementation (ferric carboxymaltose)
246
+
247
+ Step 4: Device Therapy Evaluation
248
+
249
+ ├─ EF ≤35%, NYHA II-III, LBBB with QRS ≥150 ms, sinus rhythm?
250
+ │ └─ YES: Cardiac resynchronization therapy (CRT-D)
251
+
252
+ ├─ EF ≤35%, NYHA II-III, on GDMT ≥3 months?
253
+ │ └─ YES: ICD for primary prevention
254
+ │ (if life expectancy >1 year with good functional status)
255
+
256
+ └─ EF ≤35%, NYHA IV despite GDMT, or advanced HF?
257
+ └─ Refer to advanced HF specialist
258
+ ├─ LVAD evaluation
259
+ ├─ Heart transplant evaluation
260
+ └─ Palliative care consultation
261
+
262
+ Step 5: Monitoring and Titration
263
+
264
+ Weekly to biweekly visits during titration:
265
+ - Blood pressure (target SBP ≥90 mmHg)
266
+ - Heart rate (target 50-60 bpm)
267
+ - Potassium (target 4.0-5.0 mEq/L, hold MRA if >5.5)
268
+ - Creatinine (expect 10-20% increase, acceptable if <30% and stable)
269
+ - Symptoms and congestion status (daily weights, NYHA class)
270
+
271
+ Stable on GDMT:
272
+ - Visits every 3-6 months
273
+ - Echocardiogram at 3-6 months after GDMT optimization, then annually
274
+ - NT-proBNP or BNP trending (biomarker-guided therapy investigational)
275
+ ```
276
+
277
+ ## Risk Stratification Tools
278
+
279
+ ### Cardiovascular Risk Scores
280
+
281
+ **TIMI Risk Score (NSTEMI/Unstable Angina)**
282
+
283
+ ```
284
+ Score Calculation (0-7 points):
285
+ ☐ Age ≥65 years (1 point)
286
+ ☐ ≥3 cardiac risk factors (HTN, hyperlipidemia, diabetes, smoking, family history) (1)
287
+ ☐ Known CAD (stenosis ≥50%) (1)
288
+ ☐ ASA use in past 7 days (1)
289
+ ☐ Severe angina (≥2 episodes in 24 hours) (1)
290
+ ☐ ST deviation ≥0.5 mm (1)
291
+ ☐ Elevated cardiac biomarkers (1)
292
+
293
+ Risk Stratification:
294
+ ├─ Score 0-1: 5% risk of death/MI/urgent revasc at 14 days (Low)
295
+ │ └─ Management: Observation, stress test, outpatient follow-up
296
+
297
+ ├─ Score 2: 8% risk (Low-intermediate)
298
+ │ └─ Management: Admission, medical therapy, stress imaging
299
+
300
+ ├─ Score 3-4: 13-20% risk (Intermediate-high)
301
+ │ └─ Management: Admission, aggressive medical therapy, early invasive strategy
302
+
303
+ └─ Score 5-7: 26-41% risk (High)
304
+ └─ Management: Aggressive treatment, urgent angiography (<24 hours)
305
+ ```
306
+
307
+ **CHA2DS2-VASc Score (Stroke Risk in Atrial Fibrillation)**
308
+
309
+ ```
310
+ Score Calculation:
311
+ ☐ Congestive heart failure (1 point)
312
+ ☐ Hypertension (1)
313
+ ☐ Age ≥75 years (2)
314
+ ☐ Diabetes mellitus (1)
315
+ ☐ Prior stroke/TIA/thromboembolism (2)
316
+ ☐ Vascular disease (MI, PAD, aortic plaque) (1)
317
+ ☐ Age 65-74 years (1)
318
+ ☐ Sex category (female) (1)
319
+
320
+ Maximum score: 9 points
321
+
322
+ Treatment Algorithm:
323
+ ├─ Score 0 (male) or 1 (female): 0-1.3% annual stroke risk
324
+ │ └─ No anticoagulation or aspirin (Class IIb)
325
+
326
+ ├─ Score 1 (male): 1.3% annual stroke risk
327
+ │ └─ Consider anticoagulation (Class IIa)
328
+ │ Factors: Patient preference, bleeding risk, comorbidities
329
+
330
+ └─ Score ≥2 (male) or ≥3 (female): ≥2.2% annual stroke risk
331
+ └─ Anticoagulation recommended (Class I)
332
+ ├─ Preferred: DOAC (apixaban, rivaroxaban, edoxaban, dabigatran)
333
+ └─ Alternative: Warfarin (INR 2-3) if DOAC contraindicated
334
+
335
+ Bleeding Risk Assessment (HAS-BLED):
336
+ H - Hypertension (SBP >160)
337
+ A - Abnormal renal/liver function (1 point each)
338
+ S - Stroke history
339
+ B - Bleeding history or predisposition
340
+ L - Labile INR (if on warfarin)
341
+ E - Elderly (age >65)
342
+ D - Drugs (antiplatelet, NSAIDs) or alcohol (1 point each)
343
+
344
+ HAS-BLED ≥3: High bleeding risk → Modifiable factors, consider DOAC over warfarin
345
+ ```
346
+
347
+ ### Oncology Risk Calculators
348
+
349
+ **MELD Score (Hepatocellular Carcinoma Eligibility)**
350
+
351
+ ```
352
+ MELD = 3.78×ln(bilirubin mg/dL) + 11.2×ln(INR) + 9.57×ln(creatinine mg/dL) + 6.43
353
+
354
+ Interpretation:
355
+ ├─ MELD <10: 1.9% 3-month mortality (Low)
356
+ │ └─ Consider resection or ablation for HCC
357
+
358
+ ├─ MELD 10-19: 6-20% 3-month mortality (Moderate)
359
+ │ └─ Transplant evaluation if within Milan criteria
360
+ │ Milan: Single ≤5cm or ≤3 lesions each ≤3cm, no vascular invasion
361
+
362
+ ├─ MELD 20-29: 20-45% 3-month mortality (High)
363
+ │ └─ Urgent transplant evaluation, bridge therapy (TACE, ablation)
364
+
365
+ └─ MELD ≥30: 50-70% 3-month mortality (Very high)
366
+ └─ Transplant vs palliative care discussion
367
+ Too ill for transplant if MELD >35-40 typically
368
+ ```
369
+
370
+ **Adjuvant! Online (Breast Cancer Recurrence Risk)**
371
+
372
+ ```
373
+ Input Variables:
374
+ - Age at diagnosis
375
+ - Tumor size
376
+ - Tumor grade (1-3)
377
+ - ER status
378
+ - Node status (0, 1-3, 4-9, ≥10)
379
+ - HER2 status
380
+ - Comorbidity index
381
+
382
+ Output: 10-year risk of:
383
+ - Recurrence
384
+ - Breast cancer mortality
385
+ - Overall mortality
386
+
387
+ Treatment Benefit Estimates:
388
+ - Chemotherapy: Absolute reduction in recurrence
389
+ - Endocrine therapy: Absolute reduction in recurrence
390
+ - Trastuzumab: Absolute reduction (if HER2+)
391
+
392
+ Clinical Application:
393
+ ├─ Low risk (<10% recurrence): Consider endocrine therapy alone if ER+
394
+ ├─ Intermediate risk (10-20%): Chemotherapy discussion, genomic assay
395
+ │ └─ Oncotype DX score <26: Endocrine therapy alone
396
+ │ └─ Oncotype DX score ≥26: Chemotherapy + endocrine therapy
397
+ └─ High risk (>20%): Chemotherapy + endocrine therapy if ER+
398
+ ```
399
+
400
+ ## TikZ Flowchart Best Practices
401
+
402
+ ### Visual Design Principles
403
+
404
+ **Node Styling**
405
+ ```latex
406
+ % Decision nodes (diamond)
407
+ \tikzstyle{decision} = [diamond, draw, fill=yellow!20, text width=4.5em, text centered, inner sep=0pt]
408
+
409
+ % Process nodes (rectangle)
410
+ \tikzstyle{process} = [rectangle, draw, fill=blue!20, text width=5em, text centered, rounded corners, minimum height=3em]
411
+
412
+ % Terminal nodes (rounded rectangle)
413
+ \tikzstyle{terminal} = [rectangle, draw, fill=green!20, text width=5em, text centered, rounded corners=1em, minimum height=3em]
414
+
415
+ % Input/Output (parallelogram)
416
+ \tikzstyle{io} = [trapezium, draw, fill=purple!20, text width=5em, text centered, minimum height=3em]
417
+ ```
418
+
419
+ **Color Coding by Urgency**
420
+ - **Red**: Life-threatening, immediate action required
421
+ - **Orange**: Urgent, action within hours
422
+ - **Yellow**: Semi-urgent, action within 24-48 hours
423
+ - **Green**: Routine, stable clinical situation
424
+ - **Blue**: Informational, monitoring only
425
+
426
+ **Pathway Emphasis**
427
+ - Bold arrows for most common pathway
428
+ - Dashed arrows for rare scenarios
429
+ - Arrow thickness proportional to pathway frequency
430
+ - Highlight boxes around critical decision points
431
+
432
+ ### LaTeX TikZ Template
433
+
434
+ ```latex
435
+ \documentclass{article}
436
+ \usepackage{tikz}
437
+ \usetikzlibrary{shapes, arrows, positioning}
438
+
439
+ \begin{document}
440
+
441
+ \tikzstyle{decision} = [diamond, draw, fill=yellow!20, text width=4em, text centered, inner sep=2pt, font=\small]
442
+ \tikzstyle{process} = [rectangle, draw, fill=blue!20, text width=6em, text centered, rounded corners, minimum height=2.5em, font=\small]
443
+ \tikzstyle{terminal} = [rectangle, draw, fill=green!20, text width=6em, text centered, rounded corners=8pt, minimum height=2.5em, font=\small]
444
+ \tikzstyle{alert} = [rectangle, draw=red, line width=1.5pt, fill=red!10, text width=6em, text centered, rounded corners, minimum height=2.5em, font=\small\bfseries]
445
+ \tikzstyle{arrow} = [thick,->,>=stealth]
446
+
447
+ \begin{tikzpicture}[node distance=2cm, auto]
448
+ % Nodes
449
+ \node [terminal] (start) {Patient presents with symptom X};
450
+ \node [decision, below of=start] (decision1) {Criterion A met?};
451
+ \node [alert, below of=decision1, node distance=2.5cm] (alert1) {Immediate action};
452
+ \node [process, right of=decision1, node distance=4cm] (process1) {Standard evaluation};
453
+ \node [terminal, below of=process1, node distance=2.5cm] (end) {Outcome};
454
+
455
+ % Arrows
456
+ \draw [arrow] (start) -- (decision1);
457
+ \draw [arrow] (decision1) -- node {Yes} (alert1);
458
+ \draw [arrow] (decision1) -- node {No} (process1);
459
+ \draw [arrow] (process1) -- (end);
460
+ \draw [arrow] (alert1) -| (end);
461
+ \end{tikzpicture}
462
+
463
+ \end{document}
464
+ ```
465
+
466
+ ## Algorithm Validation
467
+
468
+ ### Development Process
469
+
470
+ **Step 1: Literature Review and Evidence Synthesis**
471
+ - Systematic review of guidelines (NCCN, ASCO, ESMO, AHA/ACC)
472
+ - Meta-analyses of clinical trials
473
+ - Expert consensus statements
474
+ - Local practice patterns and resource availability
475
+
476
+ **Step 2: Draft Algorithm Development**
477
+ - Multidisciplinary team input (physicians, nurses, pharmacists)
478
+ - Define decision nodes and criteria
479
+ - Specify actions and outcomes
480
+ - Identify areas of uncertainty
481
+
482
+ **Step 3: Pilot Testing**
483
+ - Retrospective application to historical cases (n=20-50)
484
+ - Identify scenarios not covered by algorithm
485
+ - Refine decision criteria
486
+ - Usability testing with end-users
487
+
488
+ **Step 4: Prospective Validation**
489
+ - Implement in clinical practice with data collection
490
+ - Track adherence rate (target >80%)
491
+ - Monitor outcomes vs historical controls
492
+ - User satisfaction surveys
493
+
494
+ **Step 5: Continuous Quality Improvement**
495
+ - Quarterly review of algorithm performance
496
+ - Update based on new evidence
497
+ - Address deviations and reasons for non-adherence
498
+ - Version control and change documentation
499
+
500
+ ### Performance Metrics
501
+
502
+ **Process Metrics**
503
+ - Algorithm adherence rate (% cases following algorithm)
504
+ - Time to decision (median time from presentation to treatment start)
505
+ - Completion rate (% cases reaching terminal node)
506
+
507
+ **Outcome Metrics**
508
+ - Appropriateness of care (concordance with guidelines)
509
+ - Clinical outcomes (mortality, morbidity, readmissions)
510
+ - Resource utilization (length of stay, unnecessary tests)
511
+ - Safety (adverse events, errors)
512
+
513
+ **User Experience Metrics**
514
+ - Ease of use (Likert scale survey)
515
+ - Time to use (median time to navigate algorithm)
516
+ - Perceived utility (% users reporting algorithm helpful)
517
+ - Barriers to use (qualitative feedback)
518
+
519
+ ## Implementation Strategies
520
+
521
+ ### Integration into Clinical Workflow
522
+
523
+ **Electronic Health Record Integration**
524
+ - Clinical decision support (CDS) alerts at key decision points
525
+ - Order sets linked to algorithm pathways
526
+ - Auto-population of risk scores from EHR data
527
+ - Documentation templates following algorithm structure
528
+
529
+ **Point-of-Care Tools**
530
+ - Pocket cards for quick reference
531
+ - Mobile apps with interactive algorithms
532
+ - Wall posters in clinical areas
533
+ - QR codes linking to full algorithm
534
+
535
+ **Education and Training**
536
+ - Didactic presentation of algorithm rationale
537
+ - Case-based exercises
538
+ - Simulation scenarios
539
+ - Audit and feedback on adherence
540
+
541
+ ### Overcoming Barriers
542
+
543
+ **Common Barriers**
544
+ - Algorithm complexity (too many decision points)
545
+ - Lack of awareness (not disseminated effectively)
546
+ - Disagreement with recommendations (perceived as cookbook medicine)
547
+ - Competing priorities (time pressure, multiple patients)
548
+ - Resource limitations (recommended tests/treatments not available)
549
+
550
+ **Mitigation Strategies**
551
+ - Simplify algorithms (≤7 decision points per pathway preferred)
552
+ - Champion network (local opinion leaders promoting algorithm)
553
+ - Customize to local context (allow flexibility for clinical judgment)
554
+ - Measure and report outcomes (demonstrate value)
555
+ - Provide resources (ensure algorithm-recommended options available)
556
+
557
+ ## Algorithm Maintenance and Updates
558
+
559
+ ### Version Control
560
+
561
+ **Change Log Documentation**
562
+ ```
563
+ Algorithm: NSCLC First-Line Treatment
564
+ Version: 3.2
565
+ Effective Date: January 1, 2024
566
+ Previous Version: 3.1 (effective July 1, 2023)
567
+
568
+ Changes in Version 3.2:
569
+ 1. Added KRAS G12C-mutated pathway (sotorasib, adagrasib)
570
+ - Evidence: FDA approval May 2021/2022
571
+ - Guideline: NCCN v4.2023
572
+
573
+ 2. Updated PD-L1 ≥50% recommendation to include pembrolizumab monotherapy as Option 1
574
+ - Evidence: KEYNOTE-024 5-year follow-up
575
+ - Guideline: NCCN Category 1 preferred
576
+
577
+ 3. Removed crizotinib as preferred ALK inhibitor, moved to alternative
578
+ - Evidence: ALEX, CROWN trials showing superiority of alectinib, lorlatinib
579
+ - Guideline: NCCN/ESMO Category 1 for alectinib as first-line
580
+
581
+ Reviewed by: Thoracic Oncology Committee
582
+ Approved by: Dr. [Name], Medical Director
583
+ Next Review Date: July 1, 2024
584
+ ```
585
+
586
+ ### Trigger for Updates
587
+
588
+ **Mandatory Updates (Within 3 Months)**
589
+ - FDA approval of new drug for algorithm indication
590
+ - Guideline change (NCCN, ASCO, ESMO Category 1 recommendation)
591
+ - Safety alert or black box warning added to recommended agent
592
+ - Major clinical trial results changing standard of care
593
+
594
+ **Routine Updates (Annually)**
595
+ - Minor evidence updates
596
+ - Optimization based on local performance data
597
+ - Formatting or usability improvements
598
+ - Addition of new clinical scenarios encountered
599
+
600
+ **Emergency Updates (Within 1 Week)**
601
+ - Drug shortage requiring alternative pathways
602
+ - Drug recall or safety withdrawal
603
+ - Outbreak or pandemic requiring modified protocols
604
+