@saibolla/ada 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.ada/SYSTEM.md +81 -0
- package/.ada/agents/researcher.md +69 -0
- package/.ada/agents/reviewer.md +92 -0
- package/.ada/agents/verifier.md +45 -0
- package/.ada/agents/writer.md +54 -0
- package/.ada/settings.json +32 -0
- package/.ada/themes/ada.json +85 -0
- package/.env.example +31 -0
- package/AGENTS.md +79 -0
- package/LICENSE +191 -0
- package/README.md +188 -0
- package/bin/ada.js +26 -0
- package/dist/bootstrap/sync.js +143 -0
- package/dist/cli.js +404 -0
- package/dist/config/paths.js +32 -0
- package/dist/index.js +10 -0
- package/dist/model/catalog.js +255 -0
- package/dist/model/commands.js +180 -0
- package/dist/pi/launch.js +33 -0
- package/dist/pi/package-presets.js +55 -0
- package/dist/pi/runtime.js +81 -0
- package/dist/pi/settings.js +108 -0
- package/dist/pi/web-access.js +74 -0
- package/dist/search/commands.js +12 -0
- package/dist/setup/doctor.js +126 -0
- package/dist/setup/preview.js +117 -0
- package/dist/setup/prompts.js +34 -0
- package/dist/setup/setup.js +98 -0
- package/dist/setup/update.js +133 -0
- package/dist/system/executables.js +38 -0
- package/dist/system/node-version.js +31 -0
- package/dist/system/open-url.js +35 -0
- package/dist/system/promise-polyfill.js +12 -0
- package/dist/ui/terminal.js +64 -0
- package/dist/web/launch.js +48 -0
- package/dist/web-search.js +1 -0
- package/extensions/docparser/constants.ts +62 -0
- package/extensions/docparser/deps.ts +584 -0
- package/extensions/docparser/doctor.ts +353 -0
- package/extensions/docparser/index.ts +9 -0
- package/extensions/docparser/input.ts +230 -0
- package/extensions/docparser/request.ts +67 -0
- package/extensions/docparser/schema.ts +82 -0
- package/extensions/docparser/tool.ts +305 -0
- package/extensions/docparser/types.ts +99 -0
- package/extensions/research-tools/alpha.ts +107 -0
- package/extensions/research-tools/header.ts +284 -0
- package/extensions/research-tools/help.ts +93 -0
- package/extensions/research-tools/project-scaffold.ts +64 -0
- package/extensions/research-tools/project.ts +123 -0
- package/extensions/research-tools/shared.ts +16 -0
- package/extensions/research-tools.ts +42 -0
- package/logo.d.mts +3 -0
- package/logo.mjs +14 -0
- package/metadata/commands.d.mts +46 -0
- package/metadata/commands.mjs +133 -0
- package/package.json +80 -0
- package/prompts/audit.md +17 -0
- package/prompts/autoresearch.md +66 -0
- package/prompts/compare.md +18 -0
- package/prompts/deepresearch.md +189 -0
- package/prompts/draft.md +19 -0
- package/prompts/jobs.md +16 -0
- package/prompts/litreview.md +18 -0
- package/prompts/log.md +14 -0
- package/prompts/replicate.md +24 -0
- package/prompts/review.md +18 -0
- package/prompts/watch.md +16 -0
- package/scripts/build-native-bundle.mjs +349 -0
- package/scripts/check-node-version.mjs +35 -0
- package/scripts/patch-embedded-pi.mjs +588 -0
- package/scripts/prepare-runtime-workspace.mjs +162 -0
- package/scripts/prune-runtime-deps.mjs +131 -0
- package/scripts/release.sh +152 -0
- package/skills/adaptyv/SKILL.md +112 -0
- package/skills/adaptyv/reference/api_reference.md +308 -0
- package/skills/adaptyv/reference/examples.md +913 -0
- package/skills/adaptyv/reference/experiments.md +360 -0
- package/skills/adaptyv/reference/protein_optimization.md +637 -0
- package/skills/aeon/SKILL.md +372 -0
- package/skills/aeon/references/anomaly_detection.md +154 -0
- package/skills/aeon/references/classification.md +144 -0
- package/skills/aeon/references/clustering.md +123 -0
- package/skills/aeon/references/datasets_benchmarking.md +387 -0
- package/skills/aeon/references/distances.md +256 -0
- package/skills/aeon/references/forecasting.md +140 -0
- package/skills/aeon/references/networks.md +289 -0
- package/skills/aeon/references/regression.md +118 -0
- package/skills/aeon/references/segmentation.md +163 -0
- package/skills/aeon/references/similarity_search.md +187 -0
- package/skills/aeon/references/transformations.md +246 -0
- package/skills/alpha-research/SKILL.md +42 -0
- package/skills/alpha-vantage/SKILL.md +142 -0
- package/skills/alpha-vantage/references/commodities.md +153 -0
- package/skills/alpha-vantage/references/economic-indicators.md +158 -0
- package/skills/alpha-vantage/references/forex-crypto.md +154 -0
- package/skills/alpha-vantage/references/fundamentals.md +223 -0
- package/skills/alpha-vantage/references/intelligence.md +138 -0
- package/skills/alpha-vantage/references/options.md +93 -0
- package/skills/alpha-vantage/references/technical-indicators.md +374 -0
- package/skills/alpha-vantage/references/time-series.md +157 -0
- package/skills/alphafold-database/SKILL.md +511 -0
- package/skills/alphafold-database/references/api_reference.md +423 -0
- package/skills/anndata/SKILL.md +398 -0
- package/skills/anndata/references/best_practices.md +525 -0
- package/skills/anndata/references/concatenation.md +396 -0
- package/skills/anndata/references/data_structure.md +314 -0
- package/skills/anndata/references/io_operations.md +404 -0
- package/skills/anndata/references/manipulation.md +516 -0
- package/skills/arboreto/SKILL.md +241 -0
- package/skills/arboreto/references/algorithms.md +138 -0
- package/skills/arboreto/references/basic_inference.md +151 -0
- package/skills/arboreto/references/distributed_computing.md +242 -0
- package/skills/arboreto/scripts/basic_grn_inference.py +97 -0
- package/skills/arxiv-database/SKILL.md +362 -0
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- package/skills/arxiv-database/scripts/arxiv_search.py +414 -0
- package/skills/astropy/SKILL.md +329 -0
- package/skills/astropy/references/coordinates.md +273 -0
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- package/skills/autoresearch/SKILL.md +12 -0
- package/skills/benchling-integration/SKILL.md +478 -0
- package/skills/benchling-integration/references/api_endpoints.md +883 -0
- package/skills/benchling-integration/references/authentication.md +379 -0
- package/skills/benchling-integration/references/sdk_reference.md +774 -0
- package/skills/bgpt-paper-search/SKILL.md +81 -0
- package/skills/bindingdb-database/SKILL.md +332 -0
- package/skills/bindingdb-database/references/affinity_queries.md +178 -0
- package/skills/biopython/SKILL.md +441 -0
- package/skills/biopython/references/advanced.md +577 -0
- package/skills/biopython/references/alignment.md +362 -0
- package/skills/biopython/references/blast.md +455 -0
- package/skills/biopython/references/databases.md +484 -0
- package/skills/biopython/references/phylogenetics.md +566 -0
- package/skills/biopython/references/sequence_io.md +285 -0
- package/skills/biopython/references/structure.md +564 -0
- package/skills/biorxiv-database/SKILL.md +481 -0
- package/skills/biorxiv-database/references/api_reference.md +280 -0
- package/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
- package/skills/bioservices/SKILL.md +359 -0
- package/skills/bioservices/references/identifier_mapping.md +685 -0
- package/skills/bioservices/references/services_reference.md +636 -0
- package/skills/bioservices/references/workflow_patterns.md +811 -0
- package/skills/bioservices/scripts/batch_id_converter.py +347 -0
- package/skills/bioservices/scripts/compound_cross_reference.py +378 -0
- package/skills/bioservices/scripts/pathway_analysis.py +309 -0
- package/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
- package/skills/brenda-database/SKILL.md +717 -0
- package/skills/brenda-database/references/api_reference.md +537 -0
- package/skills/brenda-database/scripts/brenda_queries.py +844 -0
- package/skills/brenda-database/scripts/brenda_visualization.py +772 -0
- package/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
- package/skills/cbioportal-database/SKILL.md +367 -0
- package/skills/cbioportal-database/references/study_exploration.md +128 -0
- package/skills/cellxgene-census/SKILL.md +509 -0
- package/skills/cellxgene-census/references/census_schema.md +182 -0
- package/skills/cellxgene-census/references/common_patterns.md +351 -0
- package/skills/chembl-database/SKILL.md +387 -0
- package/skills/chembl-database/references/api_reference.md +272 -0
- package/skills/chembl-database/scripts/example_queries.py +278 -0
- package/skills/cirq/SKILL.md +344 -0
- package/skills/cirq/references/building.md +307 -0
- package/skills/cirq/references/experiments.md +572 -0
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- package/skills/cirq/references/transformation.md +416 -0
- package/skills/citation-management/SKILL.md +1113 -0
- package/skills/citation-management/assets/bibtex_template.bib +264 -0
- package/skills/citation-management/assets/citation_checklist.md +386 -0
- package/skills/citation-management/references/bibtex_formatting.md +908 -0
- package/skills/citation-management/references/citation_validation.md +794 -0
- package/skills/citation-management/references/google_scholar_search.md +725 -0
- package/skills/citation-management/references/metadata_extraction.md +870 -0
- package/skills/citation-management/references/pubmed_search.md +839 -0
- package/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
- package/skills/citation-management/scripts/extract_metadata.py +569 -0
- package/skills/citation-management/scripts/format_bibtex.py +349 -0
- package/skills/citation-management/scripts/search_google_scholar.py +282 -0
- package/skills/citation-management/scripts/search_pubmed.py +398 -0
- package/skills/citation-management/scripts/validate_citations.py +497 -0
- package/skills/clinical-decision-support/SKILL.md +510 -0
- package/skills/clinical-decision-support/assets/biomarker_report_template.tex +380 -0
- package/skills/clinical-decision-support/assets/clinical_pathway_template.tex +222 -0
- package/skills/clinical-decision-support/assets/cohort_analysis_template.tex +359 -0
- package/skills/clinical-decision-support/assets/color_schemes.tex +149 -0
- package/skills/clinical-decision-support/assets/example_gbm_cohort.md +208 -0
- package/skills/clinical-decision-support/assets/recommendation_strength_guide.md +328 -0
- package/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +529 -0
- package/skills/clinical-decision-support/references/README.md +129 -0
- package/skills/clinical-decision-support/references/biomarker_classification.md +719 -0
- package/skills/clinical-decision-support/references/clinical_decision_algorithms.md +604 -0
- package/skills/clinical-decision-support/references/evidence_synthesis.md +840 -0
- package/skills/clinical-decision-support/references/outcome_analysis.md +640 -0
- package/skills/clinical-decision-support/references/patient_cohort_analysis.md +427 -0
- package/skills/clinical-decision-support/references/treatment_recommendations.md +521 -0
- package/skills/clinical-decision-support/scripts/biomarker_classifier.py +384 -0
- package/skills/clinical-decision-support/scripts/build_decision_tree.py +447 -0
- package/skills/clinical-decision-support/scripts/create_cohort_tables.py +524 -0
- package/skills/clinical-decision-support/scripts/generate_survival_analysis.py +422 -0
- package/skills/clinical-decision-support/scripts/validate_cds_document.py +335 -0
- package/skills/clinical-reports/SKILL.md +1131 -0
- package/skills/clinical-reports/assets/case_report_template.md +352 -0
- package/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- package/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
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- package/skills/clinical-reports/assets/pathology_report_template.md +249 -0
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- package/skills/clinical-reports/scripts/check_deidentification.py +346 -0
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- package/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
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- package/skills/clinical-reports/scripts/generate_report_template.py +163 -0
- package/skills/clinical-reports/scripts/terminology_validator.py +133 -0
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- package/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
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- package/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
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- package/skills/uspto-database/scripts/patent_search.py +290 -0
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- package/skills/vaex/references/data_processing.md +555 -0
- package/skills/vaex/references/io_operations.md +703 -0
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- package/skills/venue-templates/SKILL.md +688 -0
- package/skills/venue-templates/assets/examples/cell_summary_example.md +247 -0
- package/skills/venue-templates/assets/examples/medical_structured_abstract.md +313 -0
- package/skills/venue-templates/assets/examples/nature_abstract_examples.md +213 -0
- package/skills/venue-templates/assets/examples/neurips_introduction_example.md +245 -0
- package/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
- package/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
- package/skills/venue-templates/assets/journals/nature_article.tex +171 -0
- package/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
- package/skills/venue-templates/assets/journals/plos_one.tex +317 -0
- package/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
- package/skills/venue-templates/references/cell_press_style.md +483 -0
- package/skills/venue-templates/references/conferences_formatting.md +564 -0
- package/skills/venue-templates/references/cs_conference_style.md +463 -0
- package/skills/venue-templates/references/grants_requirements.md +787 -0
- package/skills/venue-templates/references/journals_formatting.md +486 -0
- package/skills/venue-templates/references/medical_journal_styles.md +535 -0
- package/skills/venue-templates/references/ml_conference_style.md +556 -0
- package/skills/venue-templates/references/nature_science_style.md +405 -0
- package/skills/venue-templates/references/posters_guidelines.md +628 -0
- package/skills/venue-templates/references/reviewer_expectations.md +417 -0
- package/skills/venue-templates/references/venue_writing_styles.md +321 -0
- package/skills/venue-templates/scripts/customize_template.py +206 -0
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- package/skills/venue-templates/scripts/validate_format.py +255 -0
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- package/skills/writing/SKILL.md +414 -0
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- package/skills/xlsx/SKILL.md +292 -0
- package/skills/xlsx/scripts/office/helpers/__init__.py +0 -0
- package/skills/xlsx/scripts/office/helpers/merge_runs.py +199 -0
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- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
- package/skills/xlsx/scripts/office/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
- package/skills/xlsx/scripts/office/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
- package/skills/xlsx/scripts/office/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
- package/skills/xlsx/scripts/office/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
- package/skills/xlsx/scripts/office/schemas/mce/mc.xsd +75 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-2010.xsd +560 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-2012.xsd +67 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-2018.xsd +14 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-cex-2018.xsd +20 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-cid-2016.xsd +13 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-symex-2015.xsd +8 -0
- package/skills/xlsx/scripts/office/soffice.py +183 -0
- package/skills/xlsx/scripts/office/unpack.py +132 -0
- package/skills/xlsx/scripts/office/validate.py +111 -0
- package/skills/xlsx/scripts/office/validators/__init__.py +15 -0
- package/skills/xlsx/scripts/office/validators/base.py +847 -0
- package/skills/xlsx/scripts/office/validators/docx.py +446 -0
- package/skills/xlsx/scripts/office/validators/pptx.py +275 -0
- package/skills/xlsx/scripts/office/validators/redlining.py +247 -0
- package/skills/xlsx/scripts/recalc.py +184 -0
- package/skills/zarr-python/SKILL.md +777 -0
- package/skills/zarr-python/references/api_reference.md +515 -0
- package/skills/zinc-database/SKILL.md +402 -0
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# Polars Best Practices and Performance Guide
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Comprehensive guide to writing efficient Polars code and avoiding common pitfalls.
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## Performance Optimization
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### 1. Use Lazy Evaluation
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**Always prefer lazy mode for large datasets:**
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```python
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# Bad: Eager mode loads everything immediately
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df = pl.read_csv("large_file.csv")
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result = df.filter(pl.col("age") > 25).select("name", "age")
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# Good: Lazy mode optimizes before execution
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lf = pl.scan_csv("large_file.csv")
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result = lf.filter(pl.col("age") > 25).select("name", "age").collect()
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```
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**Benefits of lazy evaluation:**
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- Predicate pushdown (filter at source)
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- Projection pushdown (read only needed columns)
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- Query optimization
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- Parallel execution planning
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### 2. Filter and Select Early
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Push filters and column selection as early as possible in the pipeline:
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```python
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# Bad: Process all data, then filter and select
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result = (
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lf.group_by("category")
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.agg(pl.col("value").mean())
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.join(other, on="category")
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.filter(pl.col("value") > 100)
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.select("category", "value")
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)
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# Good: Filter and select early
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result = (
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lf.select("category", "value") # Only needed columns
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.filter(pl.col("value") > 100) # Filter early
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.group_by("category")
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.agg(pl.col("value").mean())
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.join(other.select("category", "other_col"), on="category")
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)
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```
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### 3. Avoid Python Functions
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Stay within the expression API to maintain parallelization:
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```python
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# Bad: Python function disables parallelization
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df = df.with_columns(
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)
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# Good: Use native expressions (parallelized)
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```
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**When you must use custom functions:**
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```python
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# If truly needed, be explicit
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custom_function,
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skip_nulls=True # Optimize null handling
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```
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### 4. Use Streaming for Very Large Data
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Enable streaming for datasets larger than RAM:
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```python
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# Streaming mode processes data in chunks
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# Or use sink for direct streaming writes
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### 5. Optimize Data Types
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Choose appropriate data types to reduce memory and improve performance:
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```python
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# Bad: Default types may be wasteful
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# Good: Specify optimal types
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"data.csv",
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dtypes={
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"id": pl.UInt32, # Instead of Int64 if values fit
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"category": pl.Categorical, # For low-cardinality strings
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"date": pl.Date, # Instead of String
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"small_int": pl.Int16, # Instead of Int64
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```
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- Use `Categorical` for strings with low cardinality (<50% unique)
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- Use `Date` instead of `Datetime` when time isn't needed
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- Use `Boolean` instead of integers for binary flags
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### 6. Parallel Operations
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Structure code to maximize parallelization:
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```python
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# Good: Combined operations enable parallelization
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df = df.with_columns(
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### 7. Rechunk After Concatenation
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```python
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combined = pl.concat([df1, df2, df3])
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## Expression Patterns
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### Conditional Logic
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**Simple conditions:**
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```python
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df.with_columns(
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```
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**Multiple conditions:**
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```python
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df.with_columns(
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```
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**Complex conditions:**
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```python
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df.with_columns(
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```
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### Null Handling
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**Check for nulls:**
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|
+
```python
|
|
193
|
+
df.filter(pl.col("value").is_null())
|
|
194
|
+
df.filter(pl.col("value").is_not_null())
|
|
195
|
+
```
|
|
196
|
+
|
|
197
|
+
**Fill nulls:**
|
|
198
|
+
```python
|
|
199
|
+
# Constant value
|
|
200
|
+
df.with_columns(pl.col("value").fill_null(0))
|
|
201
|
+
|
|
202
|
+
# Forward fill
|
|
203
|
+
df.with_columns(pl.col("value").fill_null(strategy="forward"))
|
|
204
|
+
|
|
205
|
+
# Backward fill
|
|
206
|
+
df.with_columns(pl.col("value").fill_null(strategy="backward"))
|
|
207
|
+
|
|
208
|
+
# Mean
|
|
209
|
+
df.with_columns(pl.col("value").fill_null(strategy="mean"))
|
|
210
|
+
|
|
211
|
+
# Per-group fill
|
|
212
|
+
df.with_columns(
|
|
213
|
+
pl.col("value").fill_null(pl.col("value").mean()).over("group")
|
|
214
|
+
)
|
|
215
|
+
```
|
|
216
|
+
|
|
217
|
+
**Coalesce (first non-null):**
|
|
218
|
+
```python
|
|
219
|
+
df.with_columns(
|
|
220
|
+
combined=pl.coalesce(["col1", "col2", "col3"])
|
|
221
|
+
)
|
|
222
|
+
```
|
|
223
|
+
|
|
224
|
+
### Column Selection Patterns
|
|
225
|
+
|
|
226
|
+
**By name:**
|
|
227
|
+
```python
|
|
228
|
+
df.select("col1", "col2", "col3")
|
|
229
|
+
```
|
|
230
|
+
|
|
231
|
+
**By pattern:**
|
|
232
|
+
```python
|
|
233
|
+
# Regex
|
|
234
|
+
df.select(pl.col("^sales_.*$"))
|
|
235
|
+
|
|
236
|
+
# Starts with
|
|
237
|
+
df.select(pl.col("^sales"))
|
|
238
|
+
|
|
239
|
+
# Ends with
|
|
240
|
+
df.select(pl.col("_total$"))
|
|
241
|
+
|
|
242
|
+
# Contains
|
|
243
|
+
df.select(pl.col(".*revenue.*"))
|
|
244
|
+
```
|
|
245
|
+
|
|
246
|
+
**By type:**
|
|
247
|
+
```python
|
|
248
|
+
# All numeric columns
|
|
249
|
+
df.select(pl.col(pl.NUMERIC_DTYPES))
|
|
250
|
+
|
|
251
|
+
# All string columns
|
|
252
|
+
df.select(pl.col(pl.Utf8))
|
|
253
|
+
|
|
254
|
+
# Multiple types
|
|
255
|
+
df.select(pl.col(pl.NUMERIC_DTYPES, pl.Boolean))
|
|
256
|
+
```
|
|
257
|
+
|
|
258
|
+
**Exclude columns:**
|
|
259
|
+
```python
|
|
260
|
+
df.select(pl.all().exclude("id", "timestamp"))
|
|
261
|
+
```
|
|
262
|
+
|
|
263
|
+
**Transform multiple columns:**
|
|
264
|
+
```python
|
|
265
|
+
# Apply same operation to multiple columns
|
|
266
|
+
df.select(
|
|
267
|
+
pl.col("^sales_.*$") * 1.1 # 10% increase to all sales columns
|
|
268
|
+
)
|
|
269
|
+
```
|
|
270
|
+
|
|
271
|
+
### Aggregation Patterns
|
|
272
|
+
|
|
273
|
+
**Multiple aggregations:**
|
|
274
|
+
```python
|
|
275
|
+
df.group_by("category").agg(
|
|
276
|
+
pl.col("value").sum().alias("total"),
|
|
277
|
+
pl.col("value").mean().alias("average"),
|
|
278
|
+
pl.col("value").std().alias("std_dev"),
|
|
279
|
+
pl.col("id").count().alias("count"),
|
|
280
|
+
pl.col("id").n_unique().alias("unique_count"),
|
|
281
|
+
pl.col("value").min().alias("minimum"),
|
|
282
|
+
pl.col("value").max().alias("maximum"),
|
|
283
|
+
pl.col("value").quantile(0.5).alias("median"),
|
|
284
|
+
pl.col("value").quantile(0.95).alias("p95")
|
|
285
|
+
)
|
|
286
|
+
```
|
|
287
|
+
|
|
288
|
+
**Conditional aggregations:**
|
|
289
|
+
```python
|
|
290
|
+
df.group_by("category").agg(
|
|
291
|
+
# Count high values
|
|
292
|
+
(pl.col("value") > 100).sum().alias("high_count"),
|
|
293
|
+
|
|
294
|
+
# Average of filtered values
|
|
295
|
+
pl.col("value").filter(pl.col("active")).mean().alias("active_avg"),
|
|
296
|
+
|
|
297
|
+
# Conditional sum
|
|
298
|
+
pl.when(pl.col("status") == "completed")
|
|
299
|
+
.then(pl.col("amount"))
|
|
300
|
+
.otherwise(0)
|
|
301
|
+
.sum()
|
|
302
|
+
.alias("completed_total")
|
|
303
|
+
)
|
|
304
|
+
```
|
|
305
|
+
|
|
306
|
+
**Grouped transformations:**
|
|
307
|
+
```python
|
|
308
|
+
df.with_columns(
|
|
309
|
+
# Group statistics
|
|
310
|
+
group_mean=pl.col("value").mean().over("category"),
|
|
311
|
+
group_std=pl.col("value").std().over("category"),
|
|
312
|
+
|
|
313
|
+
# Rank within groups
|
|
314
|
+
rank=pl.col("value").rank().over("category"),
|
|
315
|
+
|
|
316
|
+
# Percentage of group total
|
|
317
|
+
pct_of_group=(pl.col("value") / pl.col("value").sum().over("category")) * 100
|
|
318
|
+
)
|
|
319
|
+
```
|
|
320
|
+
|
|
321
|
+
## Common Pitfalls and Anti-Patterns
|
|
322
|
+
|
|
323
|
+
### Pitfall 1: Row Iteration
|
|
324
|
+
|
|
325
|
+
```python
|
|
326
|
+
# Bad: Never iterate rows
|
|
327
|
+
for row in df.iter_rows():
|
|
328
|
+
# Process row
|
|
329
|
+
result = row[0] * 2
|
|
330
|
+
|
|
331
|
+
# Good: Use vectorized operations
|
|
332
|
+
df = df.with_columns(result=pl.col("value") * 2)
|
|
333
|
+
```
|
|
334
|
+
|
|
335
|
+
### Pitfall 2: Modifying in Place
|
|
336
|
+
|
|
337
|
+
```python
|
|
338
|
+
# Bad: Polars is immutable, this doesn't work as expected
|
|
339
|
+
df["new_col"] = df["old_col"] * 2 # May work but not recommended
|
|
340
|
+
|
|
341
|
+
# Good: Functional style
|
|
342
|
+
df = df.with_columns(new_col=pl.col("old_col") * 2)
|
|
343
|
+
```
|
|
344
|
+
|
|
345
|
+
### Pitfall 3: Not Using Expressions
|
|
346
|
+
|
|
347
|
+
```python
|
|
348
|
+
# Bad: String-based operations
|
|
349
|
+
df.select("value * 2") # Won't work
|
|
350
|
+
|
|
351
|
+
# Good: Expression-based
|
|
352
|
+
df.select(pl.col("value") * 2)
|
|
353
|
+
```
|
|
354
|
+
|
|
355
|
+
### Pitfall 4: Inefficient Joins
|
|
356
|
+
|
|
357
|
+
```python
|
|
358
|
+
# Bad: Join large tables without filtering
|
|
359
|
+
result = large_df1.join(large_df2, on="id")
|
|
360
|
+
|
|
361
|
+
# Good: Filter before joining
|
|
362
|
+
result = (
|
|
363
|
+
large_df1.filter(pl.col("active"))
|
|
364
|
+
.join(
|
|
365
|
+
large_df2.filter(pl.col("status") == "valid"),
|
|
366
|
+
on="id"
|
|
367
|
+
)
|
|
368
|
+
)
|
|
369
|
+
```
|
|
370
|
+
|
|
371
|
+
### Pitfall 5: Not Specifying Types
|
|
372
|
+
|
|
373
|
+
```python
|
|
374
|
+
# Bad: Let Polars infer everything
|
|
375
|
+
df = pl.read_csv("data.csv")
|
|
376
|
+
|
|
377
|
+
# Good: Specify types for correctness and performance
|
|
378
|
+
df = pl.read_csv(
|
|
379
|
+
"data.csv",
|
|
380
|
+
dtypes={"id": pl.Int64, "date": pl.Date, "category": pl.Categorical}
|
|
381
|
+
)
|
|
382
|
+
```
|
|
383
|
+
|
|
384
|
+
### Pitfall 6: Creating Many Small DataFrames
|
|
385
|
+
|
|
386
|
+
```python
|
|
387
|
+
# Bad: Many operations creating intermediate DataFrames
|
|
388
|
+
df1 = df.filter(pl.col("age") > 25)
|
|
389
|
+
df2 = df1.select("name", "age")
|
|
390
|
+
df3 = df2.sort("age")
|
|
391
|
+
result = df3.head(10)
|
|
392
|
+
|
|
393
|
+
# Good: Chain operations
|
|
394
|
+
result = (
|
|
395
|
+
df.filter(pl.col("age") > 25)
|
|
396
|
+
.select("name", "age")
|
|
397
|
+
.sort("age")
|
|
398
|
+
.head(10)
|
|
399
|
+
)
|
|
400
|
+
|
|
401
|
+
# Better: Use lazy mode
|
|
402
|
+
result = (
|
|
403
|
+
df.lazy()
|
|
404
|
+
.filter(pl.col("age") > 25)
|
|
405
|
+
.select("name", "age")
|
|
406
|
+
.sort("age")
|
|
407
|
+
.head(10)
|
|
408
|
+
.collect()
|
|
409
|
+
)
|
|
410
|
+
```
|
|
411
|
+
|
|
412
|
+
## Memory Management
|
|
413
|
+
|
|
414
|
+
### Monitor Memory Usage
|
|
415
|
+
|
|
416
|
+
```python
|
|
417
|
+
# Check DataFrame size
|
|
418
|
+
print(f"Estimated size: {df.estimated_size('mb'):.2f} MB")
|
|
419
|
+
|
|
420
|
+
# Profile memory during operations
|
|
421
|
+
lf = pl.scan_csv("large.csv")
|
|
422
|
+
print(lf.explain()) # See query plan
|
|
423
|
+
```
|
|
424
|
+
|
|
425
|
+
### Reduce Memory Footprint
|
|
426
|
+
|
|
427
|
+
```python
|
|
428
|
+
# 1. Use lazy mode
|
|
429
|
+
lf = pl.scan_parquet("data.parquet")
|
|
430
|
+
|
|
431
|
+
# 2. Stream results
|
|
432
|
+
result = lf.collect(streaming=True)
|
|
433
|
+
|
|
434
|
+
# 3. Select only needed columns
|
|
435
|
+
lf = lf.select("col1", "col2")
|
|
436
|
+
|
|
437
|
+
# 4. Optimize data types
|
|
438
|
+
df = df.with_columns(
|
|
439
|
+
pl.col("int_col").cast(pl.Int32), # Downcast if possible
|
|
440
|
+
pl.col("category").cast(pl.Categorical) # For low cardinality
|
|
441
|
+
)
|
|
442
|
+
|
|
443
|
+
# 5. Drop columns not needed
|
|
444
|
+
df = df.drop("large_text_col", "unused_col")
|
|
445
|
+
```
|
|
446
|
+
|
|
447
|
+
## Testing and Debugging
|
|
448
|
+
|
|
449
|
+
### Inspect Query Plans
|
|
450
|
+
|
|
451
|
+
```python
|
|
452
|
+
lf = pl.scan_csv("data.csv")
|
|
453
|
+
query = lf.filter(pl.col("age") > 25).select("name", "age")
|
|
454
|
+
|
|
455
|
+
# View the optimized query plan
|
|
456
|
+
print(query.explain())
|
|
457
|
+
|
|
458
|
+
# View detailed query plan
|
|
459
|
+
print(query.explain(optimized=True))
|
|
460
|
+
```
|
|
461
|
+
|
|
462
|
+
### Sample Data for Development
|
|
463
|
+
|
|
464
|
+
```python
|
|
465
|
+
# Use n_rows for testing
|
|
466
|
+
df = pl.read_csv("large.csv", n_rows=1000)
|
|
467
|
+
|
|
468
|
+
# Or sample after reading
|
|
469
|
+
df_sample = df.sample(n=1000, seed=42)
|
|
470
|
+
```
|
|
471
|
+
|
|
472
|
+
### Validate Schemas
|
|
473
|
+
|
|
474
|
+
```python
|
|
475
|
+
# Check schema
|
|
476
|
+
print(df.schema)
|
|
477
|
+
|
|
478
|
+
# Ensure schema matches expectation
|
|
479
|
+
expected_schema = {
|
|
480
|
+
"id": pl.Int64,
|
|
481
|
+
"name": pl.Utf8,
|
|
482
|
+
"date": pl.Date
|
|
483
|
+
}
|
|
484
|
+
|
|
485
|
+
assert df.schema == expected_schema
|
|
486
|
+
```
|
|
487
|
+
|
|
488
|
+
### Profile Performance
|
|
489
|
+
|
|
490
|
+
```python
|
|
491
|
+
import time
|
|
492
|
+
|
|
493
|
+
# Time operations
|
|
494
|
+
start = time.time()
|
|
495
|
+
result = lf.collect()
|
|
496
|
+
print(f"Execution time: {time.time() - start:.2f}s")
|
|
497
|
+
|
|
498
|
+
# Compare eager vs lazy
|
|
499
|
+
start = time.time()
|
|
500
|
+
df_eager = pl.read_csv("data.csv").filter(pl.col("age") > 25)
|
|
501
|
+
eager_time = time.time() - start
|
|
502
|
+
|
|
503
|
+
start = time.time()
|
|
504
|
+
df_lazy = pl.scan_csv("data.csv").filter(pl.col("age") > 25).collect()
|
|
505
|
+
lazy_time = time.time() - start
|
|
506
|
+
|
|
507
|
+
print(f"Eager: {eager_time:.2f}s, Lazy: {lazy_time:.2f}s")
|
|
508
|
+
```
|
|
509
|
+
|
|
510
|
+
## File Format Best Practices
|
|
511
|
+
|
|
512
|
+
### Choose the Right Format
|
|
513
|
+
|
|
514
|
+
**Parquet:**
|
|
515
|
+
- Best for: Large datasets, archival, data lakes
|
|
516
|
+
- Pros: Excellent compression, columnar, fast reads
|
|
517
|
+
- Cons: Not human-readable
|
|
518
|
+
|
|
519
|
+
**CSV:**
|
|
520
|
+
- Best for: Small datasets, human inspection, legacy systems
|
|
521
|
+
- Pros: Universal, human-readable
|
|
522
|
+
- Cons: Slow, large file size, no type preservation
|
|
523
|
+
|
|
524
|
+
**Arrow IPC:**
|
|
525
|
+
- Best for: Inter-process communication, temporary storage
|
|
526
|
+
- Pros: Fastest, zero-copy, preserves all types
|
|
527
|
+
- Cons: Less compression than Parquet
|
|
528
|
+
|
|
529
|
+
### File Reading Best Practices
|
|
530
|
+
|
|
531
|
+
```python
|
|
532
|
+
# 1. Use lazy reading
|
|
533
|
+
lf = pl.scan_parquet("data.parquet") # Not read_parquet
|
|
534
|
+
|
|
535
|
+
# 2. Read multiple files efficiently
|
|
536
|
+
lf = pl.scan_parquet("data/*.parquet") # Parallel reading
|
|
537
|
+
|
|
538
|
+
# 3. Specify schema when known
|
|
539
|
+
lf = pl.scan_csv(
|
|
540
|
+
"data.csv",
|
|
541
|
+
dtypes={"id": pl.Int64, "date": pl.Date}
|
|
542
|
+
)
|
|
543
|
+
|
|
544
|
+
# 4. Use predicate pushdown
|
|
545
|
+
result = lf.filter(pl.col("date") >= "2023-01-01").collect()
|
|
546
|
+
```
|
|
547
|
+
|
|
548
|
+
### File Writing Best Practices
|
|
549
|
+
|
|
550
|
+
```python
|
|
551
|
+
# 1. Use Parquet for large data
|
|
552
|
+
df.write_parquet("output.parquet", compression="zstd")
|
|
553
|
+
|
|
554
|
+
# 2. Partition large datasets
|
|
555
|
+
df.write_parquet("output", partition_by=["year", "month"])
|
|
556
|
+
|
|
557
|
+
# 3. Use streaming for very large writes
|
|
558
|
+
lf.sink_parquet("output.parquet") # Streaming write
|
|
559
|
+
|
|
560
|
+
# 4. Optimize compression
|
|
561
|
+
df.write_parquet(
|
|
562
|
+
"output.parquet",
|
|
563
|
+
compression="snappy", # Fast compression
|
|
564
|
+
statistics=True # Enable predicate pushdown on read
|
|
565
|
+
)
|
|
566
|
+
```
|
|
567
|
+
|
|
568
|
+
## Code Organization
|
|
569
|
+
|
|
570
|
+
### Reusable Expressions
|
|
571
|
+
|
|
572
|
+
```python
|
|
573
|
+
# Define reusable expressions
|
|
574
|
+
age_group = (
|
|
575
|
+
pl.when(pl.col("age") < 18)
|
|
576
|
+
.then("minor")
|
|
577
|
+
.when(pl.col("age") < 65)
|
|
578
|
+
.then("adult")
|
|
579
|
+
.otherwise("senior")
|
|
580
|
+
)
|
|
581
|
+
|
|
582
|
+
revenue_per_customer = pl.col("revenue") / pl.col("customer_count")
|
|
583
|
+
|
|
584
|
+
# Use in multiple contexts
|
|
585
|
+
df = df.with_columns(
|
|
586
|
+
age_group=age_group,
|
|
587
|
+
rpc=revenue_per_customer
|
|
588
|
+
)
|
|
589
|
+
|
|
590
|
+
# Reuse in filtering
|
|
591
|
+
df = df.filter(revenue_per_customer > 100)
|
|
592
|
+
```
|
|
593
|
+
|
|
594
|
+
### Pipeline Functions
|
|
595
|
+
|
|
596
|
+
```python
|
|
597
|
+
def clean_data(lf: pl.LazyFrame) -> pl.LazyFrame:
|
|
598
|
+
"""Clean and standardize data."""
|
|
599
|
+
return lf.with_columns(
|
|
600
|
+
pl.col("name").str.to_uppercase(),
|
|
601
|
+
pl.col("date").str.strptime(pl.Date, "%Y-%m-%d"),
|
|
602
|
+
pl.col("amount").fill_null(0)
|
|
603
|
+
)
|
|
604
|
+
|
|
605
|
+
def add_features(lf: pl.LazyFrame) -> pl.LazyFrame:
|
|
606
|
+
"""Add computed features."""
|
|
607
|
+
return lf.with_columns(
|
|
608
|
+
month=pl.col("date").dt.month(),
|
|
609
|
+
year=pl.col("date").dt.year(),
|
|
610
|
+
amount_log=pl.col("amount").log()
|
|
611
|
+
)
|
|
612
|
+
|
|
613
|
+
# Compose pipeline
|
|
614
|
+
result = (
|
|
615
|
+
pl.scan_csv("data.csv")
|
|
616
|
+
.pipe(clean_data)
|
|
617
|
+
.pipe(add_features)
|
|
618
|
+
.filter(pl.col("year") == 2023)
|
|
619
|
+
.collect()
|
|
620
|
+
)
|
|
621
|
+
```
|
|
622
|
+
|
|
623
|
+
## Documentation
|
|
624
|
+
|
|
625
|
+
Always document complex expressions and transformations:
|
|
626
|
+
|
|
627
|
+
```python
|
|
628
|
+
# Good: Document intent
|
|
629
|
+
df = df.with_columns(
|
|
630
|
+
# Calculate customer lifetime value as sum of purchases
|
|
631
|
+
# divided by months since first purchase
|
|
632
|
+
clv=(
|
|
633
|
+
pl.col("total_purchases") /
|
|
634
|
+
((pl.col("last_purchase_date") - pl.col("first_purchase_date"))
|
|
635
|
+
.dt.total_days() / 30)
|
|
636
|
+
)
|
|
637
|
+
)
|
|
638
|
+
```
|
|
639
|
+
|
|
640
|
+
## Version Compatibility
|
|
641
|
+
|
|
642
|
+
```python
|
|
643
|
+
# Check Polars version
|
|
644
|
+
import polars as pl
|
|
645
|
+
print(pl.__version__)
|
|
646
|
+
|
|
647
|
+
# Feature availability varies by version
|
|
648
|
+
# Document version requirements for production code
|
|
649
|
+
```
|