@saibolla/ada 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.ada/SYSTEM.md +81 -0
- package/.ada/agents/researcher.md +69 -0
- package/.ada/agents/reviewer.md +92 -0
- package/.ada/agents/verifier.md +45 -0
- package/.ada/agents/writer.md +54 -0
- package/.ada/settings.json +32 -0
- package/.ada/themes/ada.json +85 -0
- package/.env.example +31 -0
- package/AGENTS.md +79 -0
- package/LICENSE +191 -0
- package/README.md +188 -0
- package/bin/ada.js +26 -0
- package/dist/bootstrap/sync.js +143 -0
- package/dist/cli.js +404 -0
- package/dist/config/paths.js +32 -0
- package/dist/index.js +10 -0
- package/dist/model/catalog.js +255 -0
- package/dist/model/commands.js +180 -0
- package/dist/pi/launch.js +33 -0
- package/dist/pi/package-presets.js +55 -0
- package/dist/pi/runtime.js +81 -0
- package/dist/pi/settings.js +108 -0
- package/dist/pi/web-access.js +74 -0
- package/dist/search/commands.js +12 -0
- package/dist/setup/doctor.js +126 -0
- package/dist/setup/preview.js +117 -0
- package/dist/setup/prompts.js +34 -0
- package/dist/setup/setup.js +98 -0
- package/dist/setup/update.js +133 -0
- package/dist/system/executables.js +38 -0
- package/dist/system/node-version.js +31 -0
- package/dist/system/open-url.js +35 -0
- package/dist/system/promise-polyfill.js +12 -0
- package/dist/ui/terminal.js +64 -0
- package/dist/web/launch.js +48 -0
- package/dist/web-search.js +1 -0
- package/extensions/docparser/constants.ts +62 -0
- package/extensions/docparser/deps.ts +584 -0
- package/extensions/docparser/doctor.ts +353 -0
- package/extensions/docparser/index.ts +9 -0
- package/extensions/docparser/input.ts +230 -0
- package/extensions/docparser/request.ts +67 -0
- package/extensions/docparser/schema.ts +82 -0
- package/extensions/docparser/tool.ts +305 -0
- package/extensions/docparser/types.ts +99 -0
- package/extensions/research-tools/alpha.ts +107 -0
- package/extensions/research-tools/header.ts +284 -0
- package/extensions/research-tools/help.ts +93 -0
- package/extensions/research-tools/project-scaffold.ts +64 -0
- package/extensions/research-tools/project.ts +123 -0
- package/extensions/research-tools/shared.ts +16 -0
- package/extensions/research-tools.ts +42 -0
- package/logo.d.mts +3 -0
- package/logo.mjs +14 -0
- package/metadata/commands.d.mts +46 -0
- package/metadata/commands.mjs +133 -0
- package/package.json +80 -0
- package/prompts/audit.md +17 -0
- package/prompts/autoresearch.md +66 -0
- package/prompts/compare.md +18 -0
- package/prompts/deepresearch.md +189 -0
- package/prompts/draft.md +19 -0
- package/prompts/jobs.md +16 -0
- package/prompts/litreview.md +18 -0
- package/prompts/log.md +14 -0
- package/prompts/replicate.md +24 -0
- package/prompts/review.md +18 -0
- package/prompts/watch.md +16 -0
- package/scripts/build-native-bundle.mjs +349 -0
- package/scripts/check-node-version.mjs +35 -0
- package/scripts/patch-embedded-pi.mjs +588 -0
- package/scripts/prepare-runtime-workspace.mjs +162 -0
- package/scripts/prune-runtime-deps.mjs +131 -0
- package/scripts/release.sh +152 -0
- package/skills/adaptyv/SKILL.md +112 -0
- package/skills/adaptyv/reference/api_reference.md +308 -0
- package/skills/adaptyv/reference/examples.md +913 -0
- package/skills/adaptyv/reference/experiments.md +360 -0
- package/skills/adaptyv/reference/protein_optimization.md +637 -0
- package/skills/aeon/SKILL.md +372 -0
- package/skills/aeon/references/anomaly_detection.md +154 -0
- package/skills/aeon/references/classification.md +144 -0
- package/skills/aeon/references/clustering.md +123 -0
- package/skills/aeon/references/datasets_benchmarking.md +387 -0
- package/skills/aeon/references/distances.md +256 -0
- package/skills/aeon/references/forecasting.md +140 -0
- package/skills/aeon/references/networks.md +289 -0
- package/skills/aeon/references/regression.md +118 -0
- package/skills/aeon/references/segmentation.md +163 -0
- package/skills/aeon/references/similarity_search.md +187 -0
- package/skills/aeon/references/transformations.md +246 -0
- package/skills/alpha-research/SKILL.md +42 -0
- package/skills/alpha-vantage/SKILL.md +142 -0
- package/skills/alpha-vantage/references/commodities.md +153 -0
- package/skills/alpha-vantage/references/economic-indicators.md +158 -0
- package/skills/alpha-vantage/references/forex-crypto.md +154 -0
- package/skills/alpha-vantage/references/fundamentals.md +223 -0
- package/skills/alpha-vantage/references/intelligence.md +138 -0
- package/skills/alpha-vantage/references/options.md +93 -0
- package/skills/alpha-vantage/references/technical-indicators.md +374 -0
- package/skills/alpha-vantage/references/time-series.md +157 -0
- package/skills/alphafold-database/SKILL.md +511 -0
- package/skills/alphafold-database/references/api_reference.md +423 -0
- package/skills/anndata/SKILL.md +398 -0
- package/skills/anndata/references/best_practices.md +525 -0
- package/skills/anndata/references/concatenation.md +396 -0
- package/skills/anndata/references/data_structure.md +314 -0
- package/skills/anndata/references/io_operations.md +404 -0
- package/skills/anndata/references/manipulation.md +516 -0
- package/skills/arboreto/SKILL.md +241 -0
- package/skills/arboreto/references/algorithms.md +138 -0
- package/skills/arboreto/references/basic_inference.md +151 -0
- package/skills/arboreto/references/distributed_computing.md +242 -0
- package/skills/arboreto/scripts/basic_grn_inference.py +97 -0
- package/skills/arxiv-database/SKILL.md +362 -0
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- package/skills/arxiv-database/scripts/arxiv_search.py +414 -0
- package/skills/astropy/SKILL.md +329 -0
- package/skills/astropy/references/coordinates.md +273 -0
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- package/skills/autoresearch/SKILL.md +12 -0
- package/skills/benchling-integration/SKILL.md +478 -0
- package/skills/benchling-integration/references/api_endpoints.md +883 -0
- package/skills/benchling-integration/references/authentication.md +379 -0
- package/skills/benchling-integration/references/sdk_reference.md +774 -0
- package/skills/bgpt-paper-search/SKILL.md +81 -0
- package/skills/bindingdb-database/SKILL.md +332 -0
- package/skills/bindingdb-database/references/affinity_queries.md +178 -0
- package/skills/biopython/SKILL.md +441 -0
- package/skills/biopython/references/advanced.md +577 -0
- package/skills/biopython/references/alignment.md +362 -0
- package/skills/biopython/references/blast.md +455 -0
- package/skills/biopython/references/databases.md +484 -0
- package/skills/biopython/references/phylogenetics.md +566 -0
- package/skills/biopython/references/sequence_io.md +285 -0
- package/skills/biopython/references/structure.md +564 -0
- package/skills/biorxiv-database/SKILL.md +481 -0
- package/skills/biorxiv-database/references/api_reference.md +280 -0
- package/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
- package/skills/bioservices/SKILL.md +359 -0
- package/skills/bioservices/references/identifier_mapping.md +685 -0
- package/skills/bioservices/references/services_reference.md +636 -0
- package/skills/bioservices/references/workflow_patterns.md +811 -0
- package/skills/bioservices/scripts/batch_id_converter.py +347 -0
- package/skills/bioservices/scripts/compound_cross_reference.py +378 -0
- package/skills/bioservices/scripts/pathway_analysis.py +309 -0
- package/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
- package/skills/brenda-database/SKILL.md +717 -0
- package/skills/brenda-database/references/api_reference.md +537 -0
- package/skills/brenda-database/scripts/brenda_queries.py +844 -0
- package/skills/brenda-database/scripts/brenda_visualization.py +772 -0
- package/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
- package/skills/cbioportal-database/SKILL.md +367 -0
- package/skills/cbioportal-database/references/study_exploration.md +128 -0
- package/skills/cellxgene-census/SKILL.md +509 -0
- package/skills/cellxgene-census/references/census_schema.md +182 -0
- package/skills/cellxgene-census/references/common_patterns.md +351 -0
- package/skills/chembl-database/SKILL.md +387 -0
- package/skills/chembl-database/references/api_reference.md +272 -0
- package/skills/chembl-database/scripts/example_queries.py +278 -0
- package/skills/cirq/SKILL.md +344 -0
- package/skills/cirq/references/building.md +307 -0
- package/skills/cirq/references/experiments.md +572 -0
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- package/skills/cirq/references/transformation.md +416 -0
- package/skills/citation-management/SKILL.md +1113 -0
- package/skills/citation-management/assets/bibtex_template.bib +264 -0
- package/skills/citation-management/assets/citation_checklist.md +386 -0
- package/skills/citation-management/references/bibtex_formatting.md +908 -0
- package/skills/citation-management/references/citation_validation.md +794 -0
- package/skills/citation-management/references/google_scholar_search.md +725 -0
- package/skills/citation-management/references/metadata_extraction.md +870 -0
- package/skills/citation-management/references/pubmed_search.md +839 -0
- package/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
- package/skills/citation-management/scripts/extract_metadata.py +569 -0
- package/skills/citation-management/scripts/format_bibtex.py +349 -0
- package/skills/citation-management/scripts/search_google_scholar.py +282 -0
- package/skills/citation-management/scripts/search_pubmed.py +398 -0
- package/skills/citation-management/scripts/validate_citations.py +497 -0
- package/skills/clinical-decision-support/SKILL.md +510 -0
- package/skills/clinical-decision-support/assets/biomarker_report_template.tex +380 -0
- package/skills/clinical-decision-support/assets/clinical_pathway_template.tex +222 -0
- package/skills/clinical-decision-support/assets/cohort_analysis_template.tex +359 -0
- package/skills/clinical-decision-support/assets/color_schemes.tex +149 -0
- package/skills/clinical-decision-support/assets/example_gbm_cohort.md +208 -0
- package/skills/clinical-decision-support/assets/recommendation_strength_guide.md +328 -0
- package/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +529 -0
- package/skills/clinical-decision-support/references/README.md +129 -0
- package/skills/clinical-decision-support/references/biomarker_classification.md +719 -0
- package/skills/clinical-decision-support/references/clinical_decision_algorithms.md +604 -0
- package/skills/clinical-decision-support/references/evidence_synthesis.md +840 -0
- package/skills/clinical-decision-support/references/outcome_analysis.md +640 -0
- package/skills/clinical-decision-support/references/patient_cohort_analysis.md +427 -0
- package/skills/clinical-decision-support/references/treatment_recommendations.md +521 -0
- package/skills/clinical-decision-support/scripts/biomarker_classifier.py +384 -0
- package/skills/clinical-decision-support/scripts/build_decision_tree.py +447 -0
- package/skills/clinical-decision-support/scripts/create_cohort_tables.py +524 -0
- package/skills/clinical-decision-support/scripts/generate_survival_analysis.py +422 -0
- package/skills/clinical-decision-support/scripts/validate_cds_document.py +335 -0
- package/skills/clinical-reports/SKILL.md +1131 -0
- package/skills/clinical-reports/assets/case_report_template.md +352 -0
- package/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- package/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
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- package/skills/clinical-reports/assets/pathology_report_template.md +249 -0
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- package/skills/clinical-reports/scripts/check_deidentification.py +346 -0
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- package/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
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- package/skills/clinical-reports/scripts/generate_report_template.py +163 -0
- package/skills/clinical-reports/scripts/terminology_validator.py +133 -0
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- package/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
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- package/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
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- package/skills/treatment-plans/references/specialty_specific_guidelines.md +655 -0
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- package/skills/uspto-database/scripts/trademark_client.py +311 -0
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- package/skills/vaex/references/data_processing.md +555 -0
- package/skills/vaex/references/io_operations.md +703 -0
- package/skills/vaex/references/machine_learning.md +728 -0
- package/skills/vaex/references/performance.md +571 -0
- package/skills/vaex/references/visualization.md +613 -0
- package/skills/venue-templates/SKILL.md +688 -0
- package/skills/venue-templates/assets/examples/cell_summary_example.md +247 -0
- package/skills/venue-templates/assets/examples/medical_structured_abstract.md +313 -0
- package/skills/venue-templates/assets/examples/nature_abstract_examples.md +213 -0
- package/skills/venue-templates/assets/examples/neurips_introduction_example.md +245 -0
- package/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
- package/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
- package/skills/venue-templates/assets/journals/nature_article.tex +171 -0
- package/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
- package/skills/venue-templates/assets/journals/plos_one.tex +317 -0
- package/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
- package/skills/venue-templates/references/cell_press_style.md +483 -0
- package/skills/venue-templates/references/conferences_formatting.md +564 -0
- package/skills/venue-templates/references/cs_conference_style.md +463 -0
- package/skills/venue-templates/references/grants_requirements.md +787 -0
- package/skills/venue-templates/references/journals_formatting.md +486 -0
- package/skills/venue-templates/references/medical_journal_styles.md +535 -0
- package/skills/venue-templates/references/ml_conference_style.md +556 -0
- package/skills/venue-templates/references/nature_science_style.md +405 -0
- package/skills/venue-templates/references/posters_guidelines.md +628 -0
- package/skills/venue-templates/references/reviewer_expectations.md +417 -0
- package/skills/venue-templates/references/venue_writing_styles.md +321 -0
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- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
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- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
- package/skills/xlsx/scripts/office/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
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<!-- Source: https://github.com/SuperiorByteWorks-LLC/agent-project | License: Apache-2.0 | Author: Clayton Young / Superior Byte Works, LLC (Boreal Bytes) -->
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# Composing Complex Diagram Sets
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> **Back to [Style Guide](../mermaid_style_guide.md)** — This file covers how to combine multiple diagram types to document complex systems comprehensively.
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**Purpose:** A single diagram captures a single perspective. Real documentation often needs multiple diagram types working together — an overview flowchart linked to a detailed sequence diagram, an ER schema paired with a state machine showing entity lifecycle, a Gantt timeline complemented by architecture before/after views. This file teaches you when and how to compose diagrams for maximum clarity.
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---
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## When to Compose Multiple Diagrams
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| What you're documenting | Diagram combination | Why it works |
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| ------------------------ | -------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------- |
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| Full system architecture | C4 Context + Architecture + Sequence (key flows) | Context for stakeholders, infrastructure for ops, sequences for developers |
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| API design documentation | ER (data model) + Sequence (request flows) + State (entity lifecycle) | Schema for the database team, interactions for backend, states for business logic |
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| Feature specification | Flowchart (happy path) + Sequence (service interactions) + User Journey (UX) | Process for PM, implementation for engineers, experience for design |
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| Migration project | Gantt (timeline) + Architecture (before/after) + Flowchart (migration process) | Schedule for leadership, topology for infra, steps for the migration team |
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| Onboarding documentation | User Journey + Flowchart (setup steps) + Sequence (first API call) | Experience map for product, checklist for new hires, technical walkthrough for devs |
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| Incident response | State (alert lifecycle) + Sequence (escalation flow) + Flowchart (decision tree) | Status tracking for on-call, communication for management, triage for responders |
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---
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## Pattern 1: Overview + Detail
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**When to use:** You need both the big picture AND the specifics. Leadership sees the overview; engineers drill into the detail.
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The overview diagram shows high-level phases or components. One or more detail diagrams zoom into specific phases showing the internal interactions.
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### Overview — Release Pipeline
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```mermaid
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flowchart LR
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accTitle: Release Pipeline Overview
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subgraph source ["📥 Source"]
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commit[📝 Code commit] --> pr_review[🔍 PR review]
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end
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subgraph build ["🔧 Build"]
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test --> scan[🔐 Security scan]
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end
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subgraph staging ["🚀 Staging"]
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end
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subgraph production ["✅ Production"]
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rollout --> monitor[📊 Monitor metrics]
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end
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source --> build
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approval -->|Yes| production
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approval -->|No| source
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classDef phase_start fill:#dbeafe,stroke:#2563eb,stroke-width:2px,color:#1e3a5f
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class commit,pr_review,compile phase_start
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```
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_The production deployment phase involves multiple service interactions. See the detail sequence below for the canary rollout process._
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### Detail — Canary Deployment Sequence
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sequenceDiagram
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participant ci as ⚙️ CI Server
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end
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- The **overview flowchart** shows the full pipeline with subgraph-to-subgraph connections — leadership reads this to understand the release process
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- The **detail sequence** zooms into "Canary 5% → Full rollout" from the Production subgraph, showing the actual service interactions an engineer would debug
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- **Naming is consistent** — "Canary" and "Monitor metrics" appear in both diagrams, creating a clear bridge between overview and detail
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---
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## Pattern 2: Multi-Perspective Documentation
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**When to use:** The same system needs to be documented for different audiences — database teams, backend engineers, and product managers each need a different view of the same feature.
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This example documents a **User Authentication** feature from three perspectives.
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### Data Model — for database team
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erDiagram
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accDescr: Five-entity schema for user authentication covering users, sessions, refresh tokens, login attempts, and MFA devices with cardinality relationships
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USER ||--o{ REFRESH_TOKEN : "owns"
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USER ||--o{ LOGIN_ATTEMPT : "produces"
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USER ||--o{ MFA_DEVICE : "registers"
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SESSION ||--|| REFRESH_TOKEN : "paired with"
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USER {
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uuid id PK "🔑 Primary key"
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string email "📧 Unique login"
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string password_hash "🔐 Bcrypt hash"
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boolean mfa_enabled "🔒 MFA flag"
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timestamp last_login "⏰ Last active"
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}
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SESSION {
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uuid id PK "🔑 Primary key"
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uuid user_id FK "👤 Session owner"
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string ip_address "🌐 Client IP"
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string user_agent "📋 Browser info"
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}
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REFRESH_TOKEN {
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uuid id PK "🔑 Primary key"
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uuid user_id FK "👤 Token owner"
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uuid session_id FK "🔗 Paired session"
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string token_hash "🔐 Hashed token"
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boolean revoked "❌ Revoked flag"
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+
timestamp expires_at "⏰ Expiration"
|
|
163
|
+
}
|
|
164
|
+
|
|
165
|
+
LOGIN_ATTEMPT {
|
|
166
|
+
uuid id PK "🔑 Primary key"
|
|
167
|
+
uuid user_id FK "👤 Attempting user"
|
|
168
|
+
string ip_address "🌐 Source IP"
|
|
169
|
+
boolean success "✅ Outcome"
|
|
170
|
+
string failure_reason "⚠️ Why failed"
|
|
171
|
+
timestamp attempted_at "⏰ Attempt time"
|
|
172
|
+
}
|
|
173
|
+
|
|
174
|
+
MFA_DEVICE {
|
|
175
|
+
uuid id PK "🔑 Primary key"
|
|
176
|
+
uuid user_id FK "👤 Device owner"
|
|
177
|
+
string device_type "📱 TOTP or WebAuthn"
|
|
178
|
+
string secret_hash "🔐 Encrypted secret"
|
|
179
|
+
boolean verified "✅ Setup complete"
|
|
180
|
+
timestamp registered_at "⏰ Registered"
|
|
181
|
+
}
|
|
182
|
+
```
|
|
183
|
+
|
|
184
|
+
### Authentication Flow — for backend team
|
|
185
|
+
|
|
186
|
+
```mermaid
|
|
187
|
+
sequenceDiagram
|
|
188
|
+
accTitle: Login Flow with MFA
|
|
189
|
+
accDescr: Step-by-step authentication sequence showing credential validation, conditional MFA challenge, token issuance, and failure handling between browser, API, auth service, and database
|
|
190
|
+
|
|
191
|
+
participant B as 👤 Browser
|
|
192
|
+
participant API as 🌐 API Gateway
|
|
193
|
+
participant Auth as 🔐 Auth Service
|
|
194
|
+
participant DB as 💾 Database
|
|
195
|
+
|
|
196
|
+
B->>API: 📤 POST /login (email, password)
|
|
197
|
+
API->>Auth: 🔐 Validate credentials
|
|
198
|
+
Auth->>DB: 🔍 Fetch user by email
|
|
199
|
+
DB-->>Auth: 👤 User record
|
|
200
|
+
|
|
201
|
+
Auth->>Auth: 🔐 Verify password hash
|
|
202
|
+
|
|
203
|
+
alt ❌ Invalid password
|
|
204
|
+
Auth->>DB: 📝 Log failed attempt
|
|
205
|
+
Auth-->>API: ❌ 401 Unauthorized
|
|
206
|
+
API-->>B: ❌ Invalid credentials
|
|
207
|
+
else ✅ Password valid
|
|
208
|
+
alt 🔒 MFA enabled
|
|
209
|
+
Auth-->>API: ⚠️ 202 MFA required
|
|
210
|
+
API-->>B: 📱 Show MFA prompt
|
|
211
|
+
|
|
212
|
+
B->>API: 📤 POST /login/mfa (code)
|
|
213
|
+
API->>Auth: 🔐 Verify MFA code
|
|
214
|
+
Auth->>DB: 🔍 Fetch MFA device
|
|
215
|
+
DB-->>Auth: 📱 Device record
|
|
216
|
+
Auth->>Auth: 🔐 Validate TOTP
|
|
217
|
+
|
|
218
|
+
alt ❌ Invalid code
|
|
219
|
+
Auth-->>API: ❌ 401 Invalid code
|
|
220
|
+
API-->>B: ❌ Try again
|
|
221
|
+
else ✅ Code valid
|
|
222
|
+
Auth->>DB: 📝 Create session + tokens
|
|
223
|
+
Auth-->>API: ✅ 200 + tokens
|
|
224
|
+
API-->>B: ✅ Set cookies + redirect
|
|
225
|
+
end
|
|
226
|
+
else 🔓 No MFA
|
|
227
|
+
Auth->>DB: 📝 Create session + tokens
|
|
228
|
+
Auth-->>API: ✅ 200 + tokens
|
|
229
|
+
API-->>B: ✅ Set cookies + redirect
|
|
230
|
+
end
|
|
231
|
+
end
|
|
232
|
+
```
|
|
233
|
+
|
|
234
|
+
### Login Experience — for product team
|
|
235
|
+
|
|
236
|
+
```mermaid
|
|
237
|
+
journey
|
|
238
|
+
accTitle: Login Experience Journey Map
|
|
239
|
+
accDescr: User satisfaction scores across the sign-in experience for password-only users and MFA users showing friction points in the multi-factor flow
|
|
240
|
+
|
|
241
|
+
title 👤 Login Experience
|
|
242
|
+
section 🔐 Sign In
|
|
243
|
+
Navigate to login : 4 : User
|
|
244
|
+
Enter email and password : 3 : User
|
|
245
|
+
Click sign in button : 4 : User
|
|
246
|
+
section 📱 MFA Challenge
|
|
247
|
+
Receive MFA prompt : 3 : MFA User
|
|
248
|
+
Open authenticator app : 2 : MFA User
|
|
249
|
+
Enter 6-digit code : 2 : MFA User
|
|
250
|
+
Handle expired code : 1 : MFA User
|
|
251
|
+
section ✅ Post-Login
|
|
252
|
+
Land on dashboard : 5 : User
|
|
253
|
+
See personalized content : 5 : User
|
|
254
|
+
Resume previous session : 4 : User
|
|
255
|
+
```
|
|
256
|
+
|
|
257
|
+
### How these connect
|
|
258
|
+
|
|
259
|
+
- **Same entities, different views** — "User", "Session", "MFA Device" appear in the ER diagram as tables, in the sequence as participants/operations, and in the journey as experience touchpoints
|
|
260
|
+
- **Each audience gets actionable information** — the DB team sees indexes and cardinality, the backend team sees API contracts and error codes, the product team sees satisfaction scores and friction points
|
|
261
|
+
- **The journey reveals what the sequence hides** — the sequence diagram shows MFA as a clean conditional branch, but the journey map shows it's actually the worst part of the UX (scores 1-2). This drives the product decision to invest in WebAuthn/passkeys
|
|
262
|
+
|
|
263
|
+
---
|
|
264
|
+
|
|
265
|
+
## Pattern 3: Before/After Architecture
|
|
266
|
+
|
|
267
|
+
**When to use:** Migration documentation where stakeholders need to see the current state, the target state, and understand the transformation.
|
|
268
|
+
|
|
269
|
+
### Current State — Monolith
|
|
270
|
+
|
|
271
|
+
```mermaid
|
|
272
|
+
flowchart TB
|
|
273
|
+
accTitle: Current State Monolith Architecture
|
|
274
|
+
accDescr: Single Rails monolith handling all traffic through one server connected to one database showing the scaling bottleneck
|
|
275
|
+
|
|
276
|
+
client([👤 All traffic]) --> mono[🖥️ Rails **Monolith**]
|
|
277
|
+
mono --> db[(💾 Single PostgreSQL)]
|
|
278
|
+
mono --> jobs[⏰ Background **jobs**]
|
|
279
|
+
jobs --> db
|
|
280
|
+
|
|
281
|
+
classDef bottleneck fill:#fee2e2,stroke:#dc2626,stroke-width:2px,color:#7f1d1d
|
|
282
|
+
classDef neutral fill:#f3f4f6,stroke:#6b7280,stroke-width:2px,color:#1f2937
|
|
283
|
+
|
|
284
|
+
class mono,db bottleneck
|
|
285
|
+
class client,jobs neutral
|
|
286
|
+
```
|
|
287
|
+
|
|
288
|
+
> ⚠️ **Problem:** Single database is the bottleneck. Monolith can't scale horizontally. Deploy = full restart.
|
|
289
|
+
|
|
290
|
+
### Target State — Microservices
|
|
291
|
+
|
|
292
|
+
```mermaid
|
|
293
|
+
flowchart TB
|
|
294
|
+
accTitle: Target State Microservices Architecture
|
|
295
|
+
accDescr: Decomposed microservices architecture with API gateway routing to independent services each with their own data store and a shared message queue for async communication
|
|
296
|
+
|
|
297
|
+
client([👤 All traffic]) --> gw[🌐 API **Gateway**]
|
|
298
|
+
|
|
299
|
+
subgraph services ["⚙️ Services"]
|
|
300
|
+
user_svc[👤 User Service]
|
|
301
|
+
order_svc[📋 Order Service]
|
|
302
|
+
product_svc[📦 Product Service]
|
|
303
|
+
end
|
|
304
|
+
|
|
305
|
+
subgraph data ["💾 Data Stores"]
|
|
306
|
+
user_db[(💾 Users DB)]
|
|
307
|
+
order_db[(💾 Orders DB)]
|
|
308
|
+
product_db[(💾 Products DB)]
|
|
309
|
+
end
|
|
310
|
+
|
|
311
|
+
gw --> user_svc
|
|
312
|
+
gw --> order_svc
|
|
313
|
+
gw --> product_svc
|
|
314
|
+
|
|
315
|
+
user_svc --> user_db
|
|
316
|
+
order_svc --> order_db
|
|
317
|
+
product_svc --> product_db
|
|
318
|
+
|
|
319
|
+
order_svc --> mq[📥 Message Queue]
|
|
320
|
+
mq --> user_svc
|
|
321
|
+
mq --> product_svc
|
|
322
|
+
|
|
323
|
+
classDef gateway fill:#ede9fe,stroke:#7c3aed,stroke-width:2px,color:#3b0764
|
|
324
|
+
classDef service fill:#dbeafe,stroke:#2563eb,stroke-width:2px,color:#1e3a5f
|
|
325
|
+
classDef datastore fill:#dcfce7,stroke:#16a34a,stroke-width:2px,color:#14532d
|
|
326
|
+
classDef infra fill:#fef9c3,stroke:#ca8a04,stroke-width:2px,color:#713f12
|
|
327
|
+
|
|
328
|
+
class gw gateway
|
|
329
|
+
class user_svc,order_svc,product_svc service
|
|
330
|
+
class user_db,order_db,product_db datastore
|
|
331
|
+
class mq infra
|
|
332
|
+
```
|
|
333
|
+
|
|
334
|
+
> ✅ **Result:** Each service scales independently. Database-per-service eliminates the shared bottleneck. Async messaging decouples service dependencies.
|
|
335
|
+
|
|
336
|
+
### How these connect
|
|
337
|
+
|
|
338
|
+
- **Same layout, different complexity** — both diagrams use `flowchart TB` so the structural transformation is visually obvious. The monolith is 4 nodes; the target is 11 nodes with subgraphs.
|
|
339
|
+
- **Color tells the story** — the monolith uses red (danger) on the bottleneck components. The target uses blue/green/purple to show healthy, differentiated components.
|
|
340
|
+
- **Prose bridges the diagrams** — the ⚠️ problem callout and ✅ result callout explain _why_ the architecture changes, not just _what_ changed.
|
|
341
|
+
|
|
342
|
+
---
|
|
343
|
+
|
|
344
|
+
## Linking Diagrams in Documentation
|
|
345
|
+
|
|
346
|
+
When composing diagrams in a real document, follow these practices:
|
|
347
|
+
|
|
348
|
+
| Practice | Example |
|
|
349
|
+
| ---------------------------- | ----------------------------------------------------------------------------------------------------------------------------------- |
|
|
350
|
+
| **Use headers as anchors** | `See [Authentication Flow](#authentication-flow-for-backend-team) for the full login sequence` |
|
|
351
|
+
| **Reference specific nodes** | "The **API Gateway** from the overview connects to the services detailed below" |
|
|
352
|
+
| **Consistent naming** | Same entity = same name in every diagram (User Service, not "User Svc" in one and "Users API" in another) |
|
|
353
|
+
| **Adjacent placement** | Keep related diagrams in consecutive sections, not scattered across the document |
|
|
354
|
+
| **Bridging prose** | One sentence between diagrams explaining how they connect: "The sequence below zooms into the Deploy phase from the pipeline above" |
|
|
355
|
+
| **Audience labels** | Mark sections: "### Data Model — _for database team_" so readers skip to their view |
|
|
356
|
+
|
|
357
|
+
---
|
|
358
|
+
|
|
359
|
+
## Choosing Your Composition Strategy
|
|
360
|
+
|
|
361
|
+
```mermaid
|
|
362
|
+
flowchart TB
|
|
363
|
+
accTitle: Diagram Composition Decision Tree
|
|
364
|
+
accDescr: Decision flowchart for choosing between single diagram, overview plus detail, multi-perspective, or before-after composition strategies based on audience and documentation needs
|
|
365
|
+
|
|
366
|
+
start([📋 What are you documenting?]) --> audience{👥 Multiple audiences?}
|
|
367
|
+
|
|
368
|
+
audience -->|Yes| perspectives[📐 Multi-Perspective]
|
|
369
|
+
audience -->|No| depth{📏 Need both summary and detail?}
|
|
370
|
+
|
|
371
|
+
depth -->|Yes| overview[🔍 Overview + Detail]
|
|
372
|
+
depth -->|No| change{🔄 Showing a change over time?}
|
|
373
|
+
|
|
374
|
+
change -->|Yes| before_after[⚡ Before / After]
|
|
375
|
+
change -->|No| single[📊 Single diagram is fine]
|
|
376
|
+
|
|
377
|
+
classDef decision fill:#fef9c3,stroke:#ca8a04,stroke-width:2px,color:#713f12
|
|
378
|
+
classDef result fill:#dbeafe,stroke:#2563eb,stroke-width:2px,color:#1e3a5f
|
|
379
|
+
classDef start_style fill:#ede9fe,stroke:#7c3aed,stroke-width:2px,color:#3b0764
|
|
380
|
+
|
|
381
|
+
class audience,depth,change decision
|
|
382
|
+
class perspectives,overview,before_after,single result
|
|
383
|
+
class start start_style
|
|
384
|
+
```
|
|
@@ -0,0 +1,222 @@
|
|
|
1
|
+
<!-- Source: https://github.com/SuperiorByteWorks-LLC/agent-project | License: Apache-2.0 | Author: Clayton Young / Superior Byte Works, LLC (Boreal Bytes) -->
|
|
2
|
+
|
|
3
|
+
# Entity Relationship (ER) Diagram
|
|
4
|
+
|
|
5
|
+
> **Back to [Style Guide](../mermaid_style_guide.md)** — Read the style guide first for emoji, color, and accessibility rules.
|
|
6
|
+
|
|
7
|
+
**Syntax keyword:** `erDiagram`
|
|
8
|
+
**Best for:** Database schemas, data models, entity relationships, API data structures
|
|
9
|
+
**When NOT to use:** Class hierarchies with methods (use [Class](class.md)), process flows (use [Flowchart](flowchart.md))
|
|
10
|
+
|
|
11
|
+
---
|
|
12
|
+
|
|
13
|
+
## Exemplar Diagram
|
|
14
|
+
|
|
15
|
+
```mermaid
|
|
16
|
+
erDiagram
|
|
17
|
+
accTitle: Project Management Data Model
|
|
18
|
+
accDescr: Entity relationships for a project management system showing teams, projects, tasks, members, and comments with cardinality
|
|
19
|
+
|
|
20
|
+
TEAM ||--o{ PROJECT : "owns"
|
|
21
|
+
PROJECT ||--o{ TASK : "contains"
|
|
22
|
+
TASK ||--o{ COMMENT : "has"
|
|
23
|
+
TEAM ||--o{ MEMBER : "includes"
|
|
24
|
+
MEMBER ||--o{ TASK : "assigned to"
|
|
25
|
+
MEMBER ||--o{ COMMENT : "writes"
|
|
26
|
+
|
|
27
|
+
TEAM {
|
|
28
|
+
uuid id PK "🔑 Primary key"
|
|
29
|
+
string name "👥 Team name"
|
|
30
|
+
string department "🏢 Department"
|
|
31
|
+
}
|
|
32
|
+
|
|
33
|
+
PROJECT {
|
|
34
|
+
uuid id PK "🔑 Primary key"
|
|
35
|
+
uuid team_id FK "🔗 Team reference"
|
|
36
|
+
string title "📋 Project title"
|
|
37
|
+
string status "📊 Current status"
|
|
38
|
+
date deadline "⏰ Due date"
|
|
39
|
+
}
|
|
40
|
+
|
|
41
|
+
TASK {
|
|
42
|
+
uuid id PK "🔑 Primary key"
|
|
43
|
+
uuid project_id FK "🔗 Project reference"
|
|
44
|
+
uuid assignee_id FK "👤 Assigned member"
|
|
45
|
+
string title "📝 Task title"
|
|
46
|
+
string priority "⚠️ Priority level"
|
|
47
|
+
string status "📊 Current status"
|
|
48
|
+
}
|
|
49
|
+
|
|
50
|
+
MEMBER {
|
|
51
|
+
uuid id PK "🔑 Primary key"
|
|
52
|
+
uuid team_id FK "🔗 Team reference"
|
|
53
|
+
string name "👤 Full name"
|
|
54
|
+
string email "📧 Email address"
|
|
55
|
+
string role "🏷️ Job role"
|
|
56
|
+
}
|
|
57
|
+
|
|
58
|
+
COMMENT {
|
|
59
|
+
uuid id PK "🔑 Primary key"
|
|
60
|
+
uuid task_id FK "🔗 Task reference"
|
|
61
|
+
uuid author_id FK "👤 Author reference"
|
|
62
|
+
text body "📝 Comment text"
|
|
63
|
+
timestamp created_at "⏰ Created time"
|
|
64
|
+
}
|
|
65
|
+
```
|
|
66
|
+
|
|
67
|
+
---
|
|
68
|
+
|
|
69
|
+
## Tips
|
|
70
|
+
|
|
71
|
+
- Include data types, `PK`/`FK` annotations, and **comment strings** with emoji for context
|
|
72
|
+
- Use clear verb-phrase relationship labels: `"owns"`, `"contains"`, `"assigned to"`
|
|
73
|
+
- Cardinality notation:
|
|
74
|
+
- `||--o{` one-to-many
|
|
75
|
+
- `||--||` one-to-one
|
|
76
|
+
- `}o--o{` many-to-many
|
|
77
|
+
- `o` = zero or more, `|` = exactly one
|
|
78
|
+
- Limit to **5–7 entities** per diagram — split large schemas by domain
|
|
79
|
+
- Entity names: `UPPER_CASE` (SQL convention)
|
|
80
|
+
|
|
81
|
+
---
|
|
82
|
+
|
|
83
|
+
## Template
|
|
84
|
+
|
|
85
|
+
```mermaid
|
|
86
|
+
erDiagram
|
|
87
|
+
accTitle: Your Title Here
|
|
88
|
+
accDescr: Describe the data model and key relationships between entities
|
|
89
|
+
|
|
90
|
+
ENTITY_A ||--o{ ENTITY_B : "has many"
|
|
91
|
+
ENTITY_B ||--|| ENTITY_C : "belongs to"
|
|
92
|
+
|
|
93
|
+
ENTITY_A {
|
|
94
|
+
uuid id PK "🔑 Primary key"
|
|
95
|
+
string name "📝 Display name"
|
|
96
|
+
}
|
|
97
|
+
|
|
98
|
+
ENTITY_B {
|
|
99
|
+
uuid id PK "🔑 Primary key"
|
|
100
|
+
uuid entity_a_id FK "🔗 Reference"
|
|
101
|
+
string value "📊 Value field"
|
|
102
|
+
}
|
|
103
|
+
```
|
|
104
|
+
|
|
105
|
+
---
|
|
106
|
+
|
|
107
|
+
## Complex Example
|
|
108
|
+
|
|
109
|
+
A multi-tenant SaaS platform schema with 10 entities spanning three domains — identity & access, billing & subscriptions, and audit & security. Relationships show the full cardinality picture from tenant isolation through user permissions to invoice generation.
|
|
110
|
+
|
|
111
|
+
```mermaid
|
|
112
|
+
erDiagram
|
|
113
|
+
accTitle: SaaS Multi-Tenant Platform Schema
|
|
114
|
+
accDescr: Ten-entity data model for a multi-tenant SaaS platform covering identity management, role-based access, subscription billing, and audit logging with full cardinality relationships
|
|
115
|
+
|
|
116
|
+
TENANT ||--o{ ORGANIZATION : "contains"
|
|
117
|
+
ORGANIZATION ||--o{ USER : "employs"
|
|
118
|
+
ORGANIZATION ||--|| SUBSCRIPTION : "holds"
|
|
119
|
+
USER }o--o{ ROLE : "assigned"
|
|
120
|
+
ROLE ||--o{ PERMISSION : "grants"
|
|
121
|
+
SUBSCRIPTION ||--|| PLAN : "subscribes to"
|
|
122
|
+
SUBSCRIPTION ||--o{ INVOICE : "generates"
|
|
123
|
+
USER ||--o{ AUDIT_LOG : "produces"
|
|
124
|
+
TENANT ||--o{ AUDIT_LOG : "scoped to"
|
|
125
|
+
USER ||--o{ API_KEY : "owns"
|
|
126
|
+
|
|
127
|
+
TENANT {
|
|
128
|
+
uuid id PK "🔑 Primary key"
|
|
129
|
+
string name "🏢 Tenant name"
|
|
130
|
+
string subdomain "🌐 Unique subdomain"
|
|
131
|
+
string tier "🏷️ Service tier"
|
|
132
|
+
boolean active "✅ Active status"
|
|
133
|
+
timestamp created_at "⏰ Created time"
|
|
134
|
+
}
|
|
135
|
+
|
|
136
|
+
ORGANIZATION {
|
|
137
|
+
uuid id PK "🔑 Primary key"
|
|
138
|
+
uuid tenant_id FK "🔗 Tenant reference"
|
|
139
|
+
string name "👥 Org name"
|
|
140
|
+
string billing_email "📧 Billing contact"
|
|
141
|
+
int seat_count "📊 Licensed seats"
|
|
142
|
+
}
|
|
143
|
+
|
|
144
|
+
USER {
|
|
145
|
+
uuid id PK "🔑 Primary key"
|
|
146
|
+
uuid org_id FK "🔗 Organization reference"
|
|
147
|
+
string email "📧 Login email"
|
|
148
|
+
string display_name "👤 Display name"
|
|
149
|
+
string status "📊 Account status"
|
|
150
|
+
timestamp last_login "⏰ Last active"
|
|
151
|
+
}
|
|
152
|
+
|
|
153
|
+
ROLE {
|
|
154
|
+
uuid id PK "🔑 Primary key"
|
|
155
|
+
uuid tenant_id FK "🔗 Tenant scope"
|
|
156
|
+
string name "🏷️ Role name"
|
|
157
|
+
string description "📝 Role purpose"
|
|
158
|
+
boolean system_role "🔒 Built-in flag"
|
|
159
|
+
}
|
|
160
|
+
|
|
161
|
+
PERMISSION {
|
|
162
|
+
uuid id PK "🔑 Primary key"
|
|
163
|
+
uuid role_id FK "🔗 Role reference"
|
|
164
|
+
string resource "🎯 Target resource"
|
|
165
|
+
string action "⚙️ Allowed action"
|
|
166
|
+
string scope "🔒 Permission scope"
|
|
167
|
+
}
|
|
168
|
+
|
|
169
|
+
PLAN {
|
|
170
|
+
uuid id PK "🔑 Primary key"
|
|
171
|
+
string name "🏷️ Plan name"
|
|
172
|
+
int price_cents "💰 Monthly price"
|
|
173
|
+
int seat_limit "👥 Max seats"
|
|
174
|
+
jsonb features "📋 Feature flags"
|
|
175
|
+
boolean active "✅ Available flag"
|
|
176
|
+
}
|
|
177
|
+
|
|
178
|
+
SUBSCRIPTION {
|
|
179
|
+
uuid id PK "🔑 Primary key"
|
|
180
|
+
uuid org_id FK "🔗 Organization reference"
|
|
181
|
+
uuid plan_id FK "🔗 Plan reference"
|
|
182
|
+
string status "📊 Sub status"
|
|
183
|
+
date current_period_start "📅 Period start"
|
|
184
|
+
date current_period_end "📅 Period end"
|
|
185
|
+
}
|
|
186
|
+
|
|
187
|
+
INVOICE {
|
|
188
|
+
uuid id PK "🔑 Primary key"
|
|
189
|
+
uuid subscription_id FK "🔗 Subscription reference"
|
|
190
|
+
int amount_cents "💰 Total amount"
|
|
191
|
+
string currency "💱 Currency code"
|
|
192
|
+
string status "📊 Payment status"
|
|
193
|
+
timestamp issued_at "⏰ Issue date"
|
|
194
|
+
}
|
|
195
|
+
|
|
196
|
+
AUDIT_LOG {
|
|
197
|
+
uuid id PK "🔑 Primary key"
|
|
198
|
+
uuid tenant_id FK "🔗 Tenant scope"
|
|
199
|
+
uuid user_id FK "👤 Acting user"
|
|
200
|
+
string action "⚙️ Action performed"
|
|
201
|
+
string resource_type "🎯 Target type"
|
|
202
|
+
uuid resource_id "🔗 Target ID"
|
|
203
|
+
jsonb metadata "📋 Event details"
|
|
204
|
+
timestamp created_at "⏰ Event time"
|
|
205
|
+
}
|
|
206
|
+
|
|
207
|
+
API_KEY {
|
|
208
|
+
uuid id PK "🔑 Primary key"
|
|
209
|
+
uuid user_id FK "👤 Owner"
|
|
210
|
+
string prefix "🏷️ Key prefix"
|
|
211
|
+
string hash "🔐 Hashed secret"
|
|
212
|
+
string name "📝 Key name"
|
|
213
|
+
timestamp expires_at "⏰ Expiration"
|
|
214
|
+
boolean revoked "❌ Revoked flag"
|
|
215
|
+
}
|
|
216
|
+
```
|
|
217
|
+
|
|
218
|
+
### Why this works
|
|
219
|
+
|
|
220
|
+
- **10 entities organized by domain** — identity (Tenant, Organization, User, Role, Permission), billing (Plan, Subscription, Invoice), and security (Audit Log, API Key). The relationship lines naturally cluster related entities together.
|
|
221
|
+
- **Full cardinality tells the business rules** — `||--||` (one-to-one) for Organization-Subscription means one subscription per org. `}o--o{` (many-to-many) for User-Role means flexible RBAC. Each relationship symbol encodes a constraint.
|
|
222
|
+
- **Every field has type, annotation, and purpose** — PK/FK for schema generation, emoji comments for human scanning. A developer can read this diagram and write the migration script directly.
|