@saibolla/ada 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.ada/SYSTEM.md +81 -0
- package/.ada/agents/researcher.md +69 -0
- package/.ada/agents/reviewer.md +92 -0
- package/.ada/agents/verifier.md +45 -0
- package/.ada/agents/writer.md +54 -0
- package/.ada/settings.json +32 -0
- package/.ada/themes/ada.json +85 -0
- package/.env.example +31 -0
- package/AGENTS.md +79 -0
- package/LICENSE +191 -0
- package/README.md +188 -0
- package/bin/ada.js +26 -0
- package/dist/bootstrap/sync.js +143 -0
- package/dist/cli.js +404 -0
- package/dist/config/paths.js +32 -0
- package/dist/index.js +10 -0
- package/dist/model/catalog.js +255 -0
- package/dist/model/commands.js +180 -0
- package/dist/pi/launch.js +33 -0
- package/dist/pi/package-presets.js +55 -0
- package/dist/pi/runtime.js +81 -0
- package/dist/pi/settings.js +108 -0
- package/dist/pi/web-access.js +74 -0
- package/dist/search/commands.js +12 -0
- package/dist/setup/doctor.js +126 -0
- package/dist/setup/preview.js +117 -0
- package/dist/setup/prompts.js +34 -0
- package/dist/setup/setup.js +98 -0
- package/dist/setup/update.js +133 -0
- package/dist/system/executables.js +38 -0
- package/dist/system/node-version.js +31 -0
- package/dist/system/open-url.js +35 -0
- package/dist/system/promise-polyfill.js +12 -0
- package/dist/ui/terminal.js +64 -0
- package/dist/web/launch.js +48 -0
- package/dist/web-search.js +1 -0
- package/extensions/docparser/constants.ts +62 -0
- package/extensions/docparser/deps.ts +584 -0
- package/extensions/docparser/doctor.ts +353 -0
- package/extensions/docparser/index.ts +9 -0
- package/extensions/docparser/input.ts +230 -0
- package/extensions/docparser/request.ts +67 -0
- package/extensions/docparser/schema.ts +82 -0
- package/extensions/docparser/tool.ts +305 -0
- package/extensions/docparser/types.ts +99 -0
- package/extensions/research-tools/alpha.ts +107 -0
- package/extensions/research-tools/header.ts +284 -0
- package/extensions/research-tools/help.ts +93 -0
- package/extensions/research-tools/project-scaffold.ts +64 -0
- package/extensions/research-tools/project.ts +123 -0
- package/extensions/research-tools/shared.ts +16 -0
- package/extensions/research-tools.ts +42 -0
- package/logo.d.mts +3 -0
- package/logo.mjs +14 -0
- package/metadata/commands.d.mts +46 -0
- package/metadata/commands.mjs +133 -0
- package/package.json +80 -0
- package/prompts/audit.md +17 -0
- package/prompts/autoresearch.md +66 -0
- package/prompts/compare.md +18 -0
- package/prompts/deepresearch.md +189 -0
- package/prompts/draft.md +19 -0
- package/prompts/jobs.md +16 -0
- package/prompts/litreview.md +18 -0
- package/prompts/log.md +14 -0
- package/prompts/replicate.md +24 -0
- package/prompts/review.md +18 -0
- package/prompts/watch.md +16 -0
- package/scripts/build-native-bundle.mjs +349 -0
- package/scripts/check-node-version.mjs +35 -0
- package/scripts/patch-embedded-pi.mjs +588 -0
- package/scripts/prepare-runtime-workspace.mjs +162 -0
- package/scripts/prune-runtime-deps.mjs +131 -0
- package/scripts/release.sh +152 -0
- package/skills/adaptyv/SKILL.md +112 -0
- package/skills/adaptyv/reference/api_reference.md +308 -0
- package/skills/adaptyv/reference/examples.md +913 -0
- package/skills/adaptyv/reference/experiments.md +360 -0
- package/skills/adaptyv/reference/protein_optimization.md +637 -0
- package/skills/aeon/SKILL.md +372 -0
- package/skills/aeon/references/anomaly_detection.md +154 -0
- package/skills/aeon/references/classification.md +144 -0
- package/skills/aeon/references/clustering.md +123 -0
- package/skills/aeon/references/datasets_benchmarking.md +387 -0
- package/skills/aeon/references/distances.md +256 -0
- package/skills/aeon/references/forecasting.md +140 -0
- package/skills/aeon/references/networks.md +289 -0
- package/skills/aeon/references/regression.md +118 -0
- package/skills/aeon/references/segmentation.md +163 -0
- package/skills/aeon/references/similarity_search.md +187 -0
- package/skills/aeon/references/transformations.md +246 -0
- package/skills/alpha-research/SKILL.md +42 -0
- package/skills/alpha-vantage/SKILL.md +142 -0
- package/skills/alpha-vantage/references/commodities.md +153 -0
- package/skills/alpha-vantage/references/economic-indicators.md +158 -0
- package/skills/alpha-vantage/references/forex-crypto.md +154 -0
- package/skills/alpha-vantage/references/fundamentals.md +223 -0
- package/skills/alpha-vantage/references/intelligence.md +138 -0
- package/skills/alpha-vantage/references/options.md +93 -0
- package/skills/alpha-vantage/references/technical-indicators.md +374 -0
- package/skills/alpha-vantage/references/time-series.md +157 -0
- package/skills/alphafold-database/SKILL.md +511 -0
- package/skills/alphafold-database/references/api_reference.md +423 -0
- package/skills/anndata/SKILL.md +398 -0
- package/skills/anndata/references/best_practices.md +525 -0
- package/skills/anndata/references/concatenation.md +396 -0
- package/skills/anndata/references/data_structure.md +314 -0
- package/skills/anndata/references/io_operations.md +404 -0
- package/skills/anndata/references/manipulation.md +516 -0
- package/skills/arboreto/SKILL.md +241 -0
- package/skills/arboreto/references/algorithms.md +138 -0
- package/skills/arboreto/references/basic_inference.md +151 -0
- package/skills/arboreto/references/distributed_computing.md +242 -0
- package/skills/arboreto/scripts/basic_grn_inference.py +97 -0
- package/skills/arxiv-database/SKILL.md +362 -0
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- package/skills/arxiv-database/scripts/arxiv_search.py +414 -0
- package/skills/astropy/SKILL.md +329 -0
- package/skills/astropy/references/coordinates.md +273 -0
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- package/skills/autoresearch/SKILL.md +12 -0
- package/skills/benchling-integration/SKILL.md +478 -0
- package/skills/benchling-integration/references/api_endpoints.md +883 -0
- package/skills/benchling-integration/references/authentication.md +379 -0
- package/skills/benchling-integration/references/sdk_reference.md +774 -0
- package/skills/bgpt-paper-search/SKILL.md +81 -0
- package/skills/bindingdb-database/SKILL.md +332 -0
- package/skills/bindingdb-database/references/affinity_queries.md +178 -0
- package/skills/biopython/SKILL.md +441 -0
- package/skills/biopython/references/advanced.md +577 -0
- package/skills/biopython/references/alignment.md +362 -0
- package/skills/biopython/references/blast.md +455 -0
- package/skills/biopython/references/databases.md +484 -0
- package/skills/biopython/references/phylogenetics.md +566 -0
- package/skills/biopython/references/sequence_io.md +285 -0
- package/skills/biopython/references/structure.md +564 -0
- package/skills/biorxiv-database/SKILL.md +481 -0
- package/skills/biorxiv-database/references/api_reference.md +280 -0
- package/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
- package/skills/bioservices/SKILL.md +359 -0
- package/skills/bioservices/references/identifier_mapping.md +685 -0
- package/skills/bioservices/references/services_reference.md +636 -0
- package/skills/bioservices/references/workflow_patterns.md +811 -0
- package/skills/bioservices/scripts/batch_id_converter.py +347 -0
- package/skills/bioservices/scripts/compound_cross_reference.py +378 -0
- package/skills/bioservices/scripts/pathway_analysis.py +309 -0
- package/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
- package/skills/brenda-database/SKILL.md +717 -0
- package/skills/brenda-database/references/api_reference.md +537 -0
- package/skills/brenda-database/scripts/brenda_queries.py +844 -0
- package/skills/brenda-database/scripts/brenda_visualization.py +772 -0
- package/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
- package/skills/cbioportal-database/SKILL.md +367 -0
- package/skills/cbioportal-database/references/study_exploration.md +128 -0
- package/skills/cellxgene-census/SKILL.md +509 -0
- package/skills/cellxgene-census/references/census_schema.md +182 -0
- package/skills/cellxgene-census/references/common_patterns.md +351 -0
- package/skills/chembl-database/SKILL.md +387 -0
- package/skills/chembl-database/references/api_reference.md +272 -0
- package/skills/chembl-database/scripts/example_queries.py +278 -0
- package/skills/cirq/SKILL.md +344 -0
- package/skills/cirq/references/building.md +307 -0
- package/skills/cirq/references/experiments.md +572 -0
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- package/skills/cirq/references/transformation.md +416 -0
- package/skills/citation-management/SKILL.md +1113 -0
- package/skills/citation-management/assets/bibtex_template.bib +264 -0
- package/skills/citation-management/assets/citation_checklist.md +386 -0
- package/skills/citation-management/references/bibtex_formatting.md +908 -0
- package/skills/citation-management/references/citation_validation.md +794 -0
- package/skills/citation-management/references/google_scholar_search.md +725 -0
- package/skills/citation-management/references/metadata_extraction.md +870 -0
- package/skills/citation-management/references/pubmed_search.md +839 -0
- package/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
- package/skills/citation-management/scripts/extract_metadata.py +569 -0
- package/skills/citation-management/scripts/format_bibtex.py +349 -0
- package/skills/citation-management/scripts/search_google_scholar.py +282 -0
- package/skills/citation-management/scripts/search_pubmed.py +398 -0
- package/skills/citation-management/scripts/validate_citations.py +497 -0
- package/skills/clinical-decision-support/SKILL.md +510 -0
- package/skills/clinical-decision-support/assets/biomarker_report_template.tex +380 -0
- package/skills/clinical-decision-support/assets/clinical_pathway_template.tex +222 -0
- package/skills/clinical-decision-support/assets/cohort_analysis_template.tex +359 -0
- package/skills/clinical-decision-support/assets/color_schemes.tex +149 -0
- package/skills/clinical-decision-support/assets/example_gbm_cohort.md +208 -0
- package/skills/clinical-decision-support/assets/recommendation_strength_guide.md +328 -0
- package/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +529 -0
- package/skills/clinical-decision-support/references/README.md +129 -0
- package/skills/clinical-decision-support/references/biomarker_classification.md +719 -0
- package/skills/clinical-decision-support/references/clinical_decision_algorithms.md +604 -0
- package/skills/clinical-decision-support/references/evidence_synthesis.md +840 -0
- package/skills/clinical-decision-support/references/outcome_analysis.md +640 -0
- package/skills/clinical-decision-support/references/patient_cohort_analysis.md +427 -0
- package/skills/clinical-decision-support/references/treatment_recommendations.md +521 -0
- package/skills/clinical-decision-support/scripts/biomarker_classifier.py +384 -0
- package/skills/clinical-decision-support/scripts/build_decision_tree.py +447 -0
- package/skills/clinical-decision-support/scripts/create_cohort_tables.py +524 -0
- package/skills/clinical-decision-support/scripts/generate_survival_analysis.py +422 -0
- package/skills/clinical-decision-support/scripts/validate_cds_document.py +335 -0
- package/skills/clinical-reports/SKILL.md +1131 -0
- package/skills/clinical-reports/assets/case_report_template.md +352 -0
- package/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- package/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
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- package/skills/clinical-reports/assets/pathology_report_template.md +249 -0
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- package/skills/clinical-reports/scripts/check_deidentification.py +346 -0
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- package/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
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- package/skills/clinical-reports/scripts/generate_report_template.py +163 -0
- package/skills/clinical-reports/scripts/terminology_validator.py +133 -0
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- package/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
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- package/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
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#!/bin/bash
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# run_example.sh - Run the TimesFM temperature anomaly forecasting example
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#
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# This script:
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# 1. Runs the preflight system check
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# 2. Runs the TimesFM forecast
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# 3. Generates the visualization
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#
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# Usage:
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# ./run_example.sh
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#
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# Prerequisites:
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# - Python 3.10+
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# - timesfm[torch] installed: uv pip install "timesfm[torch]"
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# - matplotlib, pandas, numpy
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set -e
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echo "============================================================"
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echo " TimesFM Example: Global Temperature Anomaly Forecast"
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echo "============================================================"
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# Step 1: Preflight check
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python3 "$SKILL_ROOT/scripts/check_system.py" || {
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exit 1
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}
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# Step 2: Run forecast
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echo ""
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echo "📊 Step 2: Running TimesFM forecast..."
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cd "$SCRIPT_DIR"
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python3 run_forecast.py
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# Step 3: Generate visualization
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echo ""
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echo "📈 Step 3: Generating visualization..."
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python3 visualize_forecast.py
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echo "============================================================"
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echo ""
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echo "Output files:"
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echo " - $SCRIPT_DIR/output/forecast_output.csv"
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echo " - $SCRIPT_DIR/output/forecast_output.json"
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#!/usr/bin/env python3
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"""
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Run TimesFM forecast on global temperature anomaly data.
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Generates forecast output CSV and JSON for the example.
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"""
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from __future__ import annotations
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import json
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from pathlib import Path
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import numpy as np
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import pandas as pd
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# Preflight check
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print("=" * 60)
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print(" TIMeSFM FORECAST - Global Temperature Anomaly Example")
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print("=" * 60)
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# Load data
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data_path = Path(__file__).parent / "temperature_anomaly.csv"
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df = pd.read_csv(data_path, parse_dates=["date"])
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df = df.sort_values("date").reset_index(drop=True)
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print(f"\n📊 Input Data: {len(df)} months of temperature anomalies")
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print(
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f" Date range: {df['date'].min().strftime('%Y-%m')} to {df['date'].max().strftime('%Y-%m')}"
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)
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print(f" Mean anomaly: {df['anomaly_c'].mean():.2f}°C")
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print(
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f" Trend: {df['anomaly_c'].iloc[-12:].mean() - df['anomaly_c'].iloc[:12].mean():.2f}°C change (first to last year)"
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)
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# Prepare input for TimesFM
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# TimesFM expects a list of 1D numpy arrays
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input_series = df["anomaly_c"].values.astype(np.float32)
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# Load TimesFM 1.0 (PyTorch)
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# NOTE: TimesFM 2.5 PyTorch checkpoint has a file format issue at time of writing.
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# The model.safetensors file is not loadable via torch.load().
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# Using TimesFM 1.0 PyTorch which works correctly.
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print("\n🤖 Loading TimesFM 1.0 (200M) PyTorch...")
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import timesfm
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hparams = timesfm.TimesFmHparams(horizon_len=12)
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checkpoint = timesfm.TimesFmCheckpoint(
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huggingface_repo_id="google/timesfm-1.0-200m-pytorch"
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)
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model = timesfm.TimesFm(hparams=hparams, checkpoint=checkpoint)
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# Forecast
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print("\n📈 Running forecast (12 months ahead)...")
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forecast_input = [input_series]
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frequency_input = [0] # Monthly data
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point_forecast, experimental_quantile_forecast = model.forecast(
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forecast_input,
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freq=frequency_input,
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)
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print(f" Point forecast shape: {point_forecast.shape}")
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print(f" Quantile forecast shape: {experimental_quantile_forecast.shape}")
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# Extract results
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point = point_forecast[0] # Shape: (horizon,)
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quantiles = experimental_quantile_forecast[0] # Shape: (horizon, num_quantiles)
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# TimesFM quantiles: [0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.99]
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# Index mapping: 0=10%, 1=20%, ..., 4=50% (median), ..., 9=99%
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quantile_labels = ["10%", "20%", "30%", "40%", "50%", "60%", "70%", "80%", "90%", "99%"]
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# Create forecast dates (2025 monthly)
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last_date = df["date"].max()
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forecast_dates = pd.date_range(
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start=last_date + pd.DateOffset(months=1), periods=12, freq="MS"
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)
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# Build output DataFrame
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output_df = pd.DataFrame(
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{
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"date": forecast_dates.strftime("%Y-%m-%d"),
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"point_forecast": point,
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"q10": quantiles[:, 0],
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"q20": quantiles[:, 1],
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"q30": quantiles[:, 2],
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"q40": quantiles[:, 3],
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"q50": quantiles[:, 4], # Median
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"q60": quantiles[:, 5],
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"q70": quantiles[:, 6],
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"q80": quantiles[:, 7],
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"q90": quantiles[:, 8],
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"q99": quantiles[:, 9],
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}
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)
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# Save outputs
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output_dir = Path(__file__).parent / "output"
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output_dir.mkdir(exist_ok=True)
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output_df.to_csv(output_dir / "forecast_output.csv", index=False)
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# JSON output for the report
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output_json = {
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"model": "TimesFM 1.0 (200M) PyTorch",
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"input": {
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"source": "NOAA GISTEMP Global Temperature Anomaly",
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"n_observations": len(df),
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"date_range": f"{df['date'].min().strftime('%Y-%m')} to {df['date'].max().strftime('%Y-%m')}",
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"mean_anomaly_c": round(df["anomaly_c"].mean(), 3),
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},
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"forecast": {
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"horizon": 12,
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"dates": forecast_dates.strftime("%Y-%m").tolist(),
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"point": point.tolist(),
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|
+
"quantiles": {
|
|
115
|
+
label: quantiles[:, i].tolist() for i, label in enumerate(quantile_labels)
|
|
116
|
+
},
|
|
117
|
+
},
|
|
118
|
+
"summary": {
|
|
119
|
+
"forecast_mean_c": round(float(point.mean()), 3),
|
|
120
|
+
"forecast_max_c": round(float(point.max()), 3),
|
|
121
|
+
"forecast_min_c": round(float(point.min()), 3),
|
|
122
|
+
"vs_last_year_mean": round(
|
|
123
|
+
float(point.mean() - df["anomaly_c"].iloc[-12:].mean()), 3
|
|
124
|
+
),
|
|
125
|
+
},
|
|
126
|
+
}
|
|
127
|
+
|
|
128
|
+
with open(output_dir / "forecast_output.json", "w") as f:
|
|
129
|
+
json.dump(output_json, f, indent=2)
|
|
130
|
+
|
|
131
|
+
# Print summary
|
|
132
|
+
print("\n" + "=" * 60)
|
|
133
|
+
print(" FORECAST RESULTS")
|
|
134
|
+
print("=" * 60)
|
|
135
|
+
print(
|
|
136
|
+
f"\n📅 Forecast period: {forecast_dates[0].strftime('%Y-%m')} to {forecast_dates[-1].strftime('%Y-%m')}"
|
|
137
|
+
)
|
|
138
|
+
print(f"\n🌡️ Temperature Anomaly Forecast (°C above 1951-1980 baseline):")
|
|
139
|
+
print(f"\n {'Month':<10} {'Point':>8} {'80% CI':>15} {'90% CI':>15}")
|
|
140
|
+
print(f" {'-' * 10} {'-' * 8} {'-' * 15} {'-' * 15}")
|
|
141
|
+
for i, (date, pt, q10, q90, q05, q95) in enumerate(
|
|
142
|
+
zip(
|
|
143
|
+
forecast_dates.strftime("%Y-%m"),
|
|
144
|
+
point,
|
|
145
|
+
quantiles[:, 1], # 20%
|
|
146
|
+
quantiles[:, 7], # 80%
|
|
147
|
+
quantiles[:, 0], # 10%
|
|
148
|
+
quantiles[:, 8], # 90%
|
|
149
|
+
)
|
|
150
|
+
):
|
|
151
|
+
print(
|
|
152
|
+
f" {date:<10} {pt:>8.3f} [{q10:>6.3f}, {q90:>6.3f}] [{q05:>6.3f}, {q95:>6.3f}]"
|
|
153
|
+
)
|
|
154
|
+
|
|
155
|
+
print(f"\n📊 Summary Statistics:")
|
|
156
|
+
print(f" Mean forecast: {point.mean():.3f}°C")
|
|
157
|
+
print(
|
|
158
|
+
f" Max forecast: {point.max():.3f}°C (Month: {forecast_dates[point.argmax()].strftime('%Y-%m')})"
|
|
159
|
+
)
|
|
160
|
+
print(
|
|
161
|
+
f" Min forecast: {point.min():.3f}°C (Month: {forecast_dates[point.argmin()].strftime('%Y-%m')})"
|
|
162
|
+
)
|
|
163
|
+
print(f" vs 2024 mean: {point.mean() - df['anomaly_c'].iloc[-12:].mean():+.3f}°C")
|
|
164
|
+
|
|
165
|
+
print(f"\n✅ Output saved to:")
|
|
166
|
+
print(f" {output_dir / 'forecast_output.csv'}")
|
|
167
|
+
print(f" {output_dir / 'forecast_output.json'}")
|
|
@@ -0,0 +1,37 @@
|
|
|
1
|
+
date,anomaly_c
|
|
2
|
+
2022-01-01,0.89
|
|
3
|
+
2022-02-01,0.89
|
|
4
|
+
2022-03-01,1.02
|
|
5
|
+
2022-04-01,0.88
|
|
6
|
+
2022-05-01,0.85
|
|
7
|
+
2022-06-01,0.88
|
|
8
|
+
2022-07-01,0.88
|
|
9
|
+
2022-08-01,0.90
|
|
10
|
+
2022-09-01,0.88
|
|
11
|
+
2022-10-01,0.95
|
|
12
|
+
2022-11-01,0.77
|
|
13
|
+
2022-12-01,0.78
|
|
14
|
+
2023-01-01,0.87
|
|
15
|
+
2023-02-01,0.98
|
|
16
|
+
2023-03-01,1.21
|
|
17
|
+
2023-04-01,1.00
|
|
18
|
+
2023-05-01,0.94
|
|
19
|
+
2023-06-01,1.08
|
|
20
|
+
2023-07-01,1.18
|
|
21
|
+
2023-08-01,1.24
|
|
22
|
+
2023-09-01,1.47
|
|
23
|
+
2023-10-01,1.32
|
|
24
|
+
2023-11-01,1.18
|
|
25
|
+
2023-12-01,1.16
|
|
26
|
+
2024-01-01,1.22
|
|
27
|
+
2024-02-01,1.35
|
|
28
|
+
2024-03-01,1.34
|
|
29
|
+
2024-04-01,1.26
|
|
30
|
+
2024-05-01,1.15
|
|
31
|
+
2024-06-01,1.20
|
|
32
|
+
2024-07-01,1.24
|
|
33
|
+
2024-08-01,1.30
|
|
34
|
+
2024-09-01,1.28
|
|
35
|
+
2024-10-01,1.27
|
|
36
|
+
2024-11-01,1.22
|
|
37
|
+
2024-12-01,1.20
|
|
@@ -0,0 +1,123 @@
|
|
|
1
|
+
#!/usr/bin/env python3
|
|
2
|
+
"""
|
|
3
|
+
Visualize TimesFM forecast results for global temperature anomaly.
|
|
4
|
+
|
|
5
|
+
Generates a publication-quality figure showing:
|
|
6
|
+
- Historical data (2022-2024)
|
|
7
|
+
- Point forecast (2025)
|
|
8
|
+
- 80% and 90% confidence intervals (fan chart)
|
|
9
|
+
|
|
10
|
+
Usage:
|
|
11
|
+
python visualize_forecast.py
|
|
12
|
+
"""
|
|
13
|
+
|
|
14
|
+
from __future__ import annotations
|
|
15
|
+
|
|
16
|
+
import json
|
|
17
|
+
from pathlib import Path
|
|
18
|
+
|
|
19
|
+
import matplotlib.pyplot as plt
|
|
20
|
+
import numpy as np
|
|
21
|
+
import pandas as pd
|
|
22
|
+
|
|
23
|
+
# Configuration
|
|
24
|
+
EXAMPLE_DIR = Path(__file__).parent
|
|
25
|
+
INPUT_FILE = EXAMPLE_DIR / "temperature_anomaly.csv"
|
|
26
|
+
FORECAST_FILE = EXAMPLE_DIR / "output" / "forecast_output.json"
|
|
27
|
+
OUTPUT_FILE = EXAMPLE_DIR / "output" / "forecast_visualization.png"
|
|
28
|
+
|
|
29
|
+
|
|
30
|
+
def main() -> None:
|
|
31
|
+
# Load historical data
|
|
32
|
+
df = pd.read_csv(INPUT_FILE, parse_dates=["date"])
|
|
33
|
+
|
|
34
|
+
# Load forecast results
|
|
35
|
+
with open(FORECAST_FILE) as f:
|
|
36
|
+
forecast = json.load(f)
|
|
37
|
+
|
|
38
|
+
# Extract forecast data
|
|
39
|
+
dates = pd.to_datetime(forecast["forecast"]["dates"])
|
|
40
|
+
point = np.array(forecast["forecast"]["point"])
|
|
41
|
+
q10 = np.array(forecast["forecast"]["quantiles"]["10%"])
|
|
42
|
+
q20 = np.array(forecast["forecast"]["quantiles"]["20%"])
|
|
43
|
+
q80 = np.array(forecast["forecast"]["quantiles"]["80%"])
|
|
44
|
+
q90 = np.array(forecast["forecast"]["quantiles"]["90%"])
|
|
45
|
+
|
|
46
|
+
# Create figure
|
|
47
|
+
fig, ax = plt.subplots(figsize=(12, 6))
|
|
48
|
+
|
|
49
|
+
# Plot historical data
|
|
50
|
+
ax.plot(
|
|
51
|
+
df["date"],
|
|
52
|
+
df["anomaly_c"],
|
|
53
|
+
color="#2563eb",
|
|
54
|
+
linewidth=1.5,
|
|
55
|
+
marker="o",
|
|
56
|
+
markersize=3,
|
|
57
|
+
label="Historical (NOAA GISTEMP)",
|
|
58
|
+
)
|
|
59
|
+
|
|
60
|
+
# Plot 90% CI (outer band)
|
|
61
|
+
ax.fill_between(dates, q10, q90, alpha=0.2, color="#dc2626", label="90% CI")
|
|
62
|
+
|
|
63
|
+
# Plot 80% CI (inner band)
|
|
64
|
+
ax.fill_between(dates, q20, q80, alpha=0.3, color="#dc2626", label="80% CI")
|
|
65
|
+
|
|
66
|
+
# Plot point forecast
|
|
67
|
+
ax.plot(
|
|
68
|
+
dates,
|
|
69
|
+
point,
|
|
70
|
+
color="#dc2626",
|
|
71
|
+
linewidth=2,
|
|
72
|
+
marker="s",
|
|
73
|
+
markersize=4,
|
|
74
|
+
label="TimesFM Forecast",
|
|
75
|
+
)
|
|
76
|
+
|
|
77
|
+
# Add vertical line at forecast boundary
|
|
78
|
+
ax.axvline(
|
|
79
|
+
x=df["date"].max(), color="#6b7280", linestyle="--", linewidth=1, alpha=0.7
|
|
80
|
+
)
|
|
81
|
+
|
|
82
|
+
# Formatting
|
|
83
|
+
ax.set_xlabel("Date", fontsize=12)
|
|
84
|
+
ax.set_ylabel("Temperature Anomaly (°C)", fontsize=12)
|
|
85
|
+
ax.set_title(
|
|
86
|
+
"TimesFM Zero-Shot Forecast Example\n36-month Temperature Anomaly → 12-month Forecast",
|
|
87
|
+
fontsize=14,
|
|
88
|
+
fontweight="bold",
|
|
89
|
+
)
|
|
90
|
+
|
|
91
|
+
# Add annotations
|
|
92
|
+
ax.annotate(
|
|
93
|
+
f"Mean forecast: {forecast['summary']['forecast_mean_c']:.2f}°C\n"
|
|
94
|
+
f"vs 2024: {forecast['summary']['vs_last_year_mean']:+.2f}°C",
|
|
95
|
+
xy=(dates[6], point[6]),
|
|
96
|
+
xytext=(dates[6], point[6] + 0.15),
|
|
97
|
+
fontsize=10,
|
|
98
|
+
arrowprops=dict(arrowstyle="->", color="#6b7280", lw=1),
|
|
99
|
+
bbox=dict(boxstyle="round,pad=0.3", facecolor="white", edgecolor="#6b7280"),
|
|
100
|
+
)
|
|
101
|
+
|
|
102
|
+
# Grid and legend
|
|
103
|
+
ax.grid(True, alpha=0.3)
|
|
104
|
+
ax.legend(loc="upper left", fontsize=10)
|
|
105
|
+
|
|
106
|
+
# Set y-axis limits
|
|
107
|
+
ax.set_ylim(0.7, 1.5)
|
|
108
|
+
|
|
109
|
+
# Rotate x-axis labels
|
|
110
|
+
plt.xticks(rotation=45, ha="right")
|
|
111
|
+
|
|
112
|
+
# Tight layout
|
|
113
|
+
plt.tight_layout()
|
|
114
|
+
|
|
115
|
+
# Save
|
|
116
|
+
fig.savefig(OUTPUT_FILE, dpi=150, bbox_inches="tight")
|
|
117
|
+
print(f"✅ Saved visualization to: {OUTPUT_FILE}")
|
|
118
|
+
|
|
119
|
+
plt.close()
|
|
120
|
+
|
|
121
|
+
|
|
122
|
+
if __name__ == "__main__":
|
|
123
|
+
main()
|
|
@@ -0,0 +1,231 @@
|
|
|
1
|
+
# TimesFM API Reference
|
|
2
|
+
|
|
3
|
+
## Model Classes
|
|
4
|
+
|
|
5
|
+
### `timesfm.TimesFM_2p5_200M_torch`
|
|
6
|
+
|
|
7
|
+
The primary model class for TimesFM 2.5 (200M parameters, PyTorch backend).
|
|
8
|
+
|
|
9
|
+
#### `from_pretrained()`
|
|
10
|
+
|
|
11
|
+
```python
|
|
12
|
+
model = timesfm.TimesFM_2p5_200M_torch.from_pretrained(
|
|
13
|
+
"google/timesfm-2.5-200m-pytorch",
|
|
14
|
+
cache_dir=None, # Optional: custom cache directory
|
|
15
|
+
force_download=True, # Re-download even if cached
|
|
16
|
+
)
|
|
17
|
+
```
|
|
18
|
+
|
|
19
|
+
| Parameter | Type | Default | Description |
|
|
20
|
+
| --------- | ---- | ------- | ----------- |
|
|
21
|
+
| `model_id` | str | `"google/timesfm-2.5-200m-pytorch"` | Hugging Face model ID |
|
|
22
|
+
| `revision` | str \| None | None | Specific model revision |
|
|
23
|
+
| `cache_dir` | str \| Path \| None | None | Custom cache directory |
|
|
24
|
+
| `force_download` | bool | True | Force re-download of weights |
|
|
25
|
+
|
|
26
|
+
**Returns**: Initialized `TimesFM_2p5_200M_torch` instance (not yet compiled).
|
|
27
|
+
|
|
28
|
+
#### `compile()`
|
|
29
|
+
|
|
30
|
+
Compiles the model with the given forecast configuration. **Must be called before `forecast()`.**
|
|
31
|
+
|
|
32
|
+
```python
|
|
33
|
+
model.compile(
|
|
34
|
+
timesfm.ForecastConfig(
|
|
35
|
+
max_context=1024,
|
|
36
|
+
max_horizon=256,
|
|
37
|
+
normalize_inputs=True,
|
|
38
|
+
per_core_batch_size=32,
|
|
39
|
+
use_continuous_quantile_head=True,
|
|
40
|
+
force_flip_invariance=True,
|
|
41
|
+
infer_is_positive=True,
|
|
42
|
+
fix_quantile_crossing=True,
|
|
43
|
+
)
|
|
44
|
+
)
|
|
45
|
+
```
|
|
46
|
+
|
|
47
|
+
**Raises**: Nothing (but `forecast()` will raise `RuntimeError` if not compiled).
|
|
48
|
+
|
|
49
|
+
#### `forecast()`
|
|
50
|
+
|
|
51
|
+
Run inference on one or more time series.
|
|
52
|
+
|
|
53
|
+
```python
|
|
54
|
+
point_forecast, quantile_forecast = model.forecast(
|
|
55
|
+
horizon=24,
|
|
56
|
+
inputs=[array1, array2, ...],
|
|
57
|
+
)
|
|
58
|
+
```
|
|
59
|
+
|
|
60
|
+
| Parameter | Type | Description |
|
|
61
|
+
| --------- | ---- | ----------- |
|
|
62
|
+
| `horizon` | int | Number of future steps to forecast |
|
|
63
|
+
| `inputs` | list[np.ndarray] | List of 1-D numpy arrays (each is a time series) |
|
|
64
|
+
|
|
65
|
+
**Returns**: `tuple[np.ndarray, np.ndarray]`
|
|
66
|
+
|
|
67
|
+
- `point_forecast`: shape `(batch_size, horizon)` — median (0.5 quantile)
|
|
68
|
+
- `quantile_forecast`: shape `(batch_size, horizon, 10)` — [mean, q10, q20, ..., q90]
|
|
69
|
+
|
|
70
|
+
**Raises**: `RuntimeError` if model is not compiled.
|
|
71
|
+
|
|
72
|
+
**Key behaviors**:
|
|
73
|
+
|
|
74
|
+
- Leading NaN values are stripped automatically
|
|
75
|
+
- Internal NaN values are linearly interpolated
|
|
76
|
+
- Series longer than `max_context` are truncated (last `max_context` points used)
|
|
77
|
+
- Series shorter than `max_context` are padded
|
|
78
|
+
|
|
79
|
+
#### `forecast_with_covariates()`
|
|
80
|
+
|
|
81
|
+
Run inference with exogenous variables (requires `timesfm[xreg]`).
|
|
82
|
+
|
|
83
|
+
```python
|
|
84
|
+
point, quantiles = model.forecast_with_covariates(
|
|
85
|
+
inputs=inputs,
|
|
86
|
+
dynamic_numerical_covariates={"temp": [temp_array1, temp_array2]},
|
|
87
|
+
dynamic_categorical_covariates={"dow": [dow_array1, dow_array2]},
|
|
88
|
+
static_categorical_covariates={"region": ["east", "west"]},
|
|
89
|
+
xreg_mode="xreg + timesfm",
|
|
90
|
+
)
|
|
91
|
+
```
|
|
92
|
+
|
|
93
|
+
| Parameter | Type | Description |
|
|
94
|
+
| --------- | ---- | ----------- |
|
|
95
|
+
| `inputs` | list[np.ndarray] | Target time series |
|
|
96
|
+
| `dynamic_numerical_covariates` | dict[str, list[np.ndarray]] | Time-varying numeric features |
|
|
97
|
+
| `dynamic_categorical_covariates` | dict[str, list[np.ndarray]] | Time-varying categorical features |
|
|
98
|
+
| `static_categorical_covariates` | dict[str, list[str]] | Fixed categorical features per series |
|
|
99
|
+
| `xreg_mode` | str | `"xreg + timesfm"` or `"timesfm + xreg"` |
|
|
100
|
+
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101
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+
**Note**: Dynamic covariates must have length `context + horizon` for each series.
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102
|
+
|
|
103
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+
---
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104
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+
|
|
105
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+
## `timesfm.ForecastConfig`
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106
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+
|
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107
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+
Immutable dataclass controlling all forecast behavior.
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108
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+
|
|
109
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+
```python
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110
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+
@dataclasses.dataclass(frozen=True)
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111
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+
class ForecastConfig:
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112
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+
max_context: int = 0
|
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113
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+
max_horizon: int = 0
|
|
114
|
+
normalize_inputs: bool = False
|
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115
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+
per_core_batch_size: int = 1
|
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116
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+
use_continuous_quantile_head: bool = False
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117
|
+
force_flip_invariance: bool = True
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118
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+
infer_is_positive: bool = True
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119
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+
fix_quantile_crossing: bool = False
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120
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+
return_backcast: bool = False
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121
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+
quantiles: list[float] = [0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9]
|
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122
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+
decode_index: int = 5
|
|
123
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+
```
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124
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+
|
|
125
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+
### Parameter Details
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|
126
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+
|
|
127
|
+
#### `max_context` (int, default=0)
|
|
128
|
+
|
|
129
|
+
Maximum number of historical time points to use as context.
|
|
130
|
+
|
|
131
|
+
- **0**: Use the model's maximum supported context (16,384 for v2.5)
|
|
132
|
+
- **N**: Truncate series to last N points
|
|
133
|
+
- **Best practice**: Set to the length of your longest series, or 512–2048 for speed
|
|
134
|
+
|
|
135
|
+
#### `max_horizon` (int, default=0)
|
|
136
|
+
|
|
137
|
+
Maximum forecast horizon.
|
|
138
|
+
|
|
139
|
+
- **0**: Use the model's maximum
|
|
140
|
+
- **N**: Forecasts up to N steps (can still call `forecast(horizon=M)` where M ≤ N)
|
|
141
|
+
- **Best practice**: Set to your expected maximum forecast length
|
|
142
|
+
|
|
143
|
+
#### `normalize_inputs` (bool, default=False)
|
|
144
|
+
|
|
145
|
+
Whether to z-normalize each series before feeding to the model.
|
|
146
|
+
|
|
147
|
+
- **True** (RECOMMENDED): Normalizes each series to zero mean, unit variance
|
|
148
|
+
- **False**: Raw values are passed directly
|
|
149
|
+
- **When False is OK**: Only if your series are already normalized or very close to scale 1.0
|
|
150
|
+
|
|
151
|
+
#### `per_core_batch_size` (int, default=1)
|
|
152
|
+
|
|
153
|
+
Number of series processed per device in each batch.
|
|
154
|
+
|
|
155
|
+
- Increase for throughput, decrease if OOM
|
|
156
|
+
- See `references/system_requirements.md` for recommended values by hardware
|
|
157
|
+
|
|
158
|
+
#### `use_continuous_quantile_head` (bool, default=False)
|
|
159
|
+
|
|
160
|
+
Use the 30M-parameter continuous quantile head for better interval calibration.
|
|
161
|
+
|
|
162
|
+
- **True** (RECOMMENDED): More accurate prediction intervals, especially for longer horizons
|
|
163
|
+
- **False**: Uses fixed quantile buckets (faster but less accurate intervals)
|
|
164
|
+
|
|
165
|
+
#### `force_flip_invariance` (bool, default=True)
|
|
166
|
+
|
|
167
|
+
Ensures the model satisfies `f(-x) = -f(x)`.
|
|
168
|
+
|
|
169
|
+
- **True** (RECOMMENDED): Mathematical consistency — forecasts are invariant to sign flip
|
|
170
|
+
- **False**: Slightly faster but may produce asymmetric forecasts
|
|
171
|
+
|
|
172
|
+
#### `infer_is_positive` (bool, default=True)
|
|
173
|
+
|
|
174
|
+
Automatically detect if all input values are positive and clamp forecasts ≥ 0.
|
|
175
|
+
|
|
176
|
+
- **True**: Safe for sales, demand, counts, prices, volumes
|
|
177
|
+
- **False**: Required for temperature, returns, PnL, any series that can be negative
|
|
178
|
+
|
|
179
|
+
#### `fix_quantile_crossing` (bool, default=False)
|
|
180
|
+
|
|
181
|
+
Post-process quantiles to ensure monotonicity (q10 ≤ q20 ≤ ... ≤ q90).
|
|
182
|
+
|
|
183
|
+
- **True** (RECOMMENDED): Guarantees well-ordered quantiles
|
|
184
|
+
- **False**: Slightly faster but quantiles may occasionally cross
|
|
185
|
+
|
|
186
|
+
#### `return_backcast` (bool, default=False)
|
|
187
|
+
|
|
188
|
+
Return the model's reconstruction of the input (backcast) in addition to forecast.
|
|
189
|
+
|
|
190
|
+
- **True**: Used for covariate workflows and diagnostics
|
|
191
|
+
- **False**: Only return forecast
|
|
192
|
+
|
|
193
|
+
---
|
|
194
|
+
|
|
195
|
+
## Available Model Checkpoints
|
|
196
|
+
|
|
197
|
+
| Model ID | Version | Params | Backend | Context |
|
|
198
|
+
| -------- | ------- | ------ | ------- | ------- |
|
|
199
|
+
| `google/timesfm-2.5-200m-pytorch` | 2.5 | 200M | PyTorch | 16,384 |
|
|
200
|
+
| `google/timesfm-2.5-200m-flax` | 2.5 | 200M | JAX/Flax | 16,384 |
|
|
201
|
+
| `google/timesfm-2.5-200m-transformers` | 2.5 | 200M | Transformers | 16,384 |
|
|
202
|
+
| `google/timesfm-2.0-500m-pytorch` | 2.0 | 500M | PyTorch | 2,048 |
|
|
203
|
+
| `google/timesfm-2.0-500m-jax` | 2.0 | 500M | JAX | 2,048 |
|
|
204
|
+
| `google/timesfm-1.0-200m-pytorch` | 1.0 | 200M | PyTorch | 2,048 |
|
|
205
|
+
| `google/timesfm-1.0-200m` | 1.0 | 200M | JAX | 2,048 |
|
|
206
|
+
|
|
207
|
+
---
|
|
208
|
+
|
|
209
|
+
## Output Shape Reference
|
|
210
|
+
|
|
211
|
+
| Output | Shape | Description |
|
|
212
|
+
| ------ | ----- | ----------- |
|
|
213
|
+
| `point_forecast` | `(B, H)` | Median forecast for B series, H steps |
|
|
214
|
+
| `quantile_forecast` | `(B, H, 10)` | Full quantile distribution |
|
|
215
|
+
| `quantile_forecast[:,:,0]` | `(B, H)` | Mean |
|
|
216
|
+
| `quantile_forecast[:,:,1]` | `(B, H)` | 10th percentile |
|
|
217
|
+
| `quantile_forecast[:,:,5]` | `(B, H)` | 50th percentile (= point_forecast) |
|
|
218
|
+
| `quantile_forecast[:,:,9]` | `(B, H)` | 90th percentile |
|
|
219
|
+
|
|
220
|
+
Where `B` = batch size (number of input series), `H` = forecast horizon.
|
|
221
|
+
|
|
222
|
+
---
|
|
223
|
+
|
|
224
|
+
## Error Handling
|
|
225
|
+
|
|
226
|
+
| Error | Cause | Fix |
|
|
227
|
+
| ----- | ----- | --- |
|
|
228
|
+
| `RuntimeError: Model is not compiled` | Called `forecast()` before `compile()` | Call `model.compile(ForecastConfig(...))` first |
|
|
229
|
+
| `torch.cuda.OutOfMemoryError` | Batch too large for GPU | Reduce `per_core_batch_size` |
|
|
230
|
+
| `ValueError: inputs must be list` | Passed array instead of list | Wrap in list: `[array]` |
|
|
231
|
+
| `HfHubHTTPError` | Download failed | Check internet, set `HF_HOME` to writable dir |
|