@saibolla/ada 0.1.2

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Files changed (1432) hide show
  1. package/.ada/SYSTEM.md +81 -0
  2. package/.ada/agents/researcher.md +69 -0
  3. package/.ada/agents/reviewer.md +92 -0
  4. package/.ada/agents/verifier.md +45 -0
  5. package/.ada/agents/writer.md +54 -0
  6. package/.ada/settings.json +32 -0
  7. package/.ada/themes/ada.json +85 -0
  8. package/.env.example +31 -0
  9. package/AGENTS.md +79 -0
  10. package/LICENSE +191 -0
  11. package/README.md +188 -0
  12. package/bin/ada.js +26 -0
  13. package/dist/bootstrap/sync.js +143 -0
  14. package/dist/cli.js +404 -0
  15. package/dist/config/paths.js +32 -0
  16. package/dist/index.js +10 -0
  17. package/dist/model/catalog.js +255 -0
  18. package/dist/model/commands.js +180 -0
  19. package/dist/pi/launch.js +33 -0
  20. package/dist/pi/package-presets.js +55 -0
  21. package/dist/pi/runtime.js +81 -0
  22. package/dist/pi/settings.js +108 -0
  23. package/dist/pi/web-access.js +74 -0
  24. package/dist/search/commands.js +12 -0
  25. package/dist/setup/doctor.js +126 -0
  26. package/dist/setup/preview.js +117 -0
  27. package/dist/setup/prompts.js +34 -0
  28. package/dist/setup/setup.js +98 -0
  29. package/dist/setup/update.js +133 -0
  30. package/dist/system/executables.js +38 -0
  31. package/dist/system/node-version.js +31 -0
  32. package/dist/system/open-url.js +35 -0
  33. package/dist/system/promise-polyfill.js +12 -0
  34. package/dist/ui/terminal.js +64 -0
  35. package/dist/web/launch.js +48 -0
  36. package/dist/web-search.js +1 -0
  37. package/extensions/docparser/constants.ts +62 -0
  38. package/extensions/docparser/deps.ts +584 -0
  39. package/extensions/docparser/doctor.ts +353 -0
  40. package/extensions/docparser/index.ts +9 -0
  41. package/extensions/docparser/input.ts +230 -0
  42. package/extensions/docparser/request.ts +67 -0
  43. package/extensions/docparser/schema.ts +82 -0
  44. package/extensions/docparser/tool.ts +305 -0
  45. package/extensions/docparser/types.ts +99 -0
  46. package/extensions/research-tools/alpha.ts +107 -0
  47. package/extensions/research-tools/header.ts +284 -0
  48. package/extensions/research-tools/help.ts +93 -0
  49. package/extensions/research-tools/project-scaffold.ts +64 -0
  50. package/extensions/research-tools/project.ts +123 -0
  51. package/extensions/research-tools/shared.ts +16 -0
  52. package/extensions/research-tools.ts +42 -0
  53. package/logo.d.mts +3 -0
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  55. package/metadata/commands.d.mts +46 -0
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  63. package/prompts/jobs.md +16 -0
  64. package/prompts/litreview.md +18 -0
  65. package/prompts/log.md +14 -0
  66. package/prompts/replicate.md +24 -0
  67. package/prompts/review.md +18 -0
  68. package/prompts/watch.md +16 -0
  69. package/scripts/build-native-bundle.mjs +349 -0
  70. package/scripts/check-node-version.mjs +35 -0
  71. package/scripts/patch-embedded-pi.mjs +588 -0
  72. package/scripts/prepare-runtime-workspace.mjs +162 -0
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@@ -0,0 +1,567 @@
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+ # Document Control Procedure Template
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+
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+ **Document Number:** SOP-4.2.4-001
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+ **Title:** Control of Documents
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+ **Revision:** 00
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+ **Effective Date:** [DATE]
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+ **Page:** 1 of [X]
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+
9
+ ---
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+
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+ ## DOCUMENT CONTROL
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+
13
+ ### Approval Signatures
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+
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+ | Role | Name | Signature | Date |
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+ |------|------|-----------|------|
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+ | Author | [NAME] | | [DATE] |
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+ | Reviewer | [NAME] | | [DATE] |
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+ | Approver (Quality Manager) | [NAME] | | [DATE] |
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+
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+ ### Revision History
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+
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+ | Revision | Date | Description of Changes | Approved By |
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+ |----------|------|------------------------|-------------|
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+ | 00 | [DATE] | Initial release | [NAME] |
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+ | | | | |
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+
28
+ ---
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+
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+ ## TABLE OF CONTENTS
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+
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+ 1. [Purpose](#1-purpose)
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+ 2. [Scope](#2-scope)
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+ 3. [Definitions](#3-definitions)
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+ 4. [Responsibilities](#4-responsibilities)
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+ 5. [Procedure](#5-procedure)
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+ - 5.1 [Document Types and Hierarchy](#51-document-types-and-hierarchy)
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+ - 5.2 [Document Numbering System](#52-document-numbering-system)
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+ - 5.3 [Document Creation](#53-document-creation)
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+ - 5.4 [Document Review and Approval](#54-document-review-and-approval)
41
+ - 5.5 [Document Distribution and Access](#55-document-distribution-and-access)
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+ - 5.6 [Document Changes](#56-document-changes)
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+ - 5.7 [Control of Obsolete Documents](#57-control-of-obsolete-documents)
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+ - 5.8 [Control of External Documents](#58-control-of-external-documents)
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+ 6. [Records](#6-records)
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+ 7. [References](#7-references)
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+ 8. [Attachments](#8-attachments)
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+
49
+ ---
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+
51
+ ## 1. PURPOSE
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+
53
+ This procedure establishes requirements for the control of documents within the Quality Management System to ensure:
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+
55
+ - Documents are approved before use
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+ - Documents are reviewed, updated, and re-approved as necessary
57
+ - Changes and current revision status are identified
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+ - Relevant versions of documents are available at points of use
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+ - Documents remain legible and readily identifiable
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+ - External documents are identified and controlled
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+ - Obsolete documents are prevented from unintended use
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+ - Obsolete documents are appropriately identified if retained
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+
64
+ This procedure ensures compliance with ISO 13485:2016 Clause 4.2.4.
65
+
66
+ ---
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+
68
+ ## 2. SCOPE
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+
70
+ This procedure applies to all controlled documents within the Quality Management System, including but not limited to:
71
+
72
+ - Quality Manual
73
+ - Standard Operating Procedures (SOPs)
74
+ - Work Instructions (WIs)
75
+ - Forms and templates
76
+ - Medical Device Files
77
+ - Design and Development documents
78
+ - Risk management documents
79
+ - Validation and verification protocols and reports
80
+ - Specifications (product, process, test methods, materials)
81
+ - Drawings and schematics
82
+ - Labels and instructions for use
83
+ - External documents (standards, regulations, customer specifications)
84
+
85
+ This procedure does NOT apply to:
86
+ - Records (controlled per SOP-[NUMBER] Control of Records)
87
+ - Transient documents (emails, meeting notes not part of QMS)
88
+ - Marketing and sales materials (unless affecting product quality or regulatory compliance)
89
+
90
+ ---
91
+
92
+ ## 3. DEFINITIONS
93
+
94
+ | Term | Definition |
95
+ |------|------------|
96
+ | **Controlled Document** | A document that is subject to review, approval, distribution control, and change management per this procedure |
97
+ | **Master Document** | The official controlled copy maintained by Document Control, from which all distributed copies originate |
98
+ | **Document Owner** | The person or department responsible for the content, accuracy, and maintenance of a document |
99
+ | **Document Control Coordinator** | Person responsible for managing the document control system |
100
+ | **Revision** | A change to a controlled document that has been approved and issued |
101
+ | **Obsolete Document** | A document that has been superseded by a newer revision or is no longer applicable |
102
+ | **External Document** | A document originating from outside the organization (standards, regulations, customer specifications, etc.) |
103
+ | **SUPERSEDED** | Watermark applied to obsolete documents retained for reference |
104
+
105
+ ---
106
+
107
+ ## 4. RESPONSIBILITIES
108
+
109
+ ### 4.1 Document Control Coordinator
110
+ - Manages document control system
111
+ - Assigns document numbers
112
+ - Maintains master document repository
113
+ - Ensures proper document approval before release
114
+ - Distributes controlled documents
115
+ - Maintains distribution lists
116
+ - Retrieves and destroys/archives obsolete documents
117
+ - Maintains document control records
118
+ - Trains personnel on document control procedures
119
+
120
+ ### 4.2 Document Owners
121
+ - Create and maintain documents within their area
122
+ - Ensure document accuracy and completeness
123
+ - Initiate document changes when needed
124
+ - Participate in document review and approval
125
+ - Identify when documents become obsolete
126
+ - Ensure personnel in their area use current documents
127
+
128
+ ### 4.3 Quality Manager
129
+ - Approves all QMS documents (SOPs, Quality Manual)
130
+ - Reviews document changes for QMS impact
131
+ - Ensures document control system effectiveness
132
+ - Audits document control compliance
133
+
134
+ ### 4.4 Department Managers
135
+ - Approve department-specific work instructions
136
+ - Ensure current documents available in their areas
137
+ - Ensure personnel trained on document changes
138
+ - Remove obsolete documents from use areas
139
+
140
+ ### 4.5 All Personnel
141
+ - Use only current, approved documents
142
+ - Report document issues (errors, illegibility, missing documents)
143
+ - Do not use obsolete or unapproved documents
144
+ - Maintain documents in good condition
145
+
146
+ ---
147
+
148
+ ## 5. PROCEDURE
149
+
150
+ ### 5.1 Document Types and Hierarchy
151
+
152
+ QMS documents are organized in a four-tier hierarchy:
153
+
154
+ **Tier 1: Quality Manual (QM)**
155
+ - Policy-level document
156
+ - Describes overall QMS
157
+ - References all Tier 2 procedures
158
+ - Approved by CEO and Quality Manager
159
+
160
+ **Tier 2: Standard Operating Procedures (SOPs)**
161
+ - Define WHAT must be done, WHO does it, WHEN
162
+ - Cross-functional processes
163
+ - Include all 31 required documented procedures per ISO 13485
164
+ - Approved by Quality Manager
165
+
166
+ **Tier 3: Work Instructions (WIs)**
167
+ - Define HOW to perform specific tasks
168
+ - Step-by-step instructions
169
+ - Department or process-specific
170
+ - Approved by Department Manager and Quality Manager
171
+
172
+ **Tier 4: Forms and Templates**
173
+ - Standardized formats for data collection
174
+ - Support SOPs and WIs
175
+ - Approved by Document Owner and Quality Manager
176
+
177
+ **Other Controlled Documents:**
178
+ - Medical Device Files (MDFs)
179
+ - Design History Files (DHFs)
180
+ - Validation documents
181
+ - Specifications
182
+ - Drawings
183
+ - Labels and instructions for use
184
+
185
+ ### 5.2 Document Numbering System
186
+
187
+ All controlled documents are assigned unique identification numbers:
188
+
189
+ **Quality Manual:**
190
+ - Format: QM-[###]
191
+ - Example: QM-001
192
+
193
+ **Standard Operating Procedures:**
194
+ - Format: SOP-[ISO Clause]-[###]
195
+ - Example: SOP-4.2.4-001 (for Clause 4.2.4 Control of Documents)
196
+ - Example: SOP-8.5-001 (for CAPA procedure)
197
+
198
+ **Work Instructions:**
199
+ - Format: WI-[Department Code]-[###]
200
+ - Example: WI-MFG-001 (Manufacturing department work instruction)
201
+ - Department codes: MFG (Manufacturing), QC (Quality Control), ENG (Engineering), etc.
202
+
203
+ **Forms:**
204
+ - Format: FORM-[SOP/WI Number]-[Letter]
205
+ - Example: FORM-SOP-8.5-001-A (CAPA Request Form)
206
+
207
+ **Medical Device Files:**
208
+ - Format: MDF-[Product Code]-[###]
209
+ - Example: MDF-ABC-001
210
+
211
+ **Other Documents:**
212
+ - Format varies by document type
213
+ - Assigned by Document Control Coordinator
214
+
215
+ **Revision Designation:**
216
+ - Initial release: Revision 00
217
+ - First revision: Revision 01
218
+ - Subsequent revisions: 02, 03, 04, etc.
219
+ - Format: [Document Number] Rev [##]
220
+
221
+ ### 5.3 Document Creation
222
+
223
+ **5.3.1 Initiating Document Creation**
224
+
225
+ 1. Document Owner identifies need for new document
226
+ 2. Document Owner notifies Document Control Coordinator
227
+ 3. Document Control Coordinator:
228
+ - Assigns document number
229
+ - Provides document template (if applicable)
230
+ - Logs document in master list as "In Development"
231
+
232
+ **5.3.2 Document Format Requirements**
233
+
234
+ All controlled documents must include:
235
+
236
+ **Header (on each page):**
237
+ - Document number
238
+ - Document title
239
+ - Revision number
240
+ - Effective date
241
+ - Page number (Page X of Y)
242
+
243
+ **Document Control Section:**
244
+ - Approval signature table
245
+ - Revision history table
246
+
247
+ **Content Requirements:**
248
+ - Clear, concise language
249
+ - Present tense, active voice
250
+ - Consistent terminology
251
+ - Numbered sections and subsections
252
+ - References to related documents
253
+ - Records generated (if applicable)
254
+
255
+ **5.3.3 Document Drafting**
256
+
257
+ 1. Document Owner drafts document content
258
+ 2. Document Owner marks document as "DRAFT" on each page
259
+ 3. Draft may be circulated for informal review and input
260
+ 4. When ready for formal review, Document Owner submits to Document Control Coordinator
261
+
262
+ ### 5.4 Document Review and Approval
263
+
264
+ **5.4.1 Review Process**
265
+
266
+ 1. Document Control Coordinator:
267
+ - Verifies document number correct
268
+ - Verifies format compliance
269
+ - Checks for required sections
270
+ - Routes for review
271
+
272
+ 2. Reviews conducted by:
273
+ - Technical reviewer (subject matter expert)
274
+ - Quality reviewer (for QMS compliance)
275
+ - Other stakeholders as appropriate
276
+
277
+ 3. Reviewers:
278
+ - Review for technical accuracy
279
+ - Review for clarity and completeness
280
+ - Review for compliance with requirements
281
+ - Provide comments to Document Owner
282
+
283
+ 4. Document Owner:
284
+ - Addresses all comments
285
+ - Revises document as needed
286
+ - Resubmits for approval
287
+
288
+ **5.4.2 Approval Process**
289
+
290
+ Approval authority based on document type:
291
+
292
+ | Document Type | Approval Authority |
293
+ |---------------|-------------------|
294
+ | Quality Manual | CEO and Quality Manager |
295
+ | Standard Operating Procedures | Quality Manager |
296
+ | Work Instructions | Department Manager and Quality Manager |
297
+ | Forms | Document Owner and Quality Manager |
298
+ | Specifications | Engineering Manager and Quality Manager |
299
+ | Medical Device Files | [Per regulatory requirements] |
300
+
301
+ **Approval Steps:**
302
+
303
+ 1. Document Control Coordinator routes document to approvers
304
+ 2. Approvers review and sign/date approval section
305
+ 3. All required approvals must be obtained before document becomes effective
306
+ 4. Document Control Coordinator:
307
+ - Removes "DRAFT" watermark
308
+ - Adds effective date (typically [X] days after approval)
309
+ - Assigns final format
310
+ - Adds to controlled document system
311
+ - Updates master document list
312
+
313
+ **5.4.3 Training Requirements**
314
+
315
+ Before document becomes effective:
316
+ - Affected personnel identified
317
+ - Training conducted as needed
318
+ - Training records maintained per SOP-[NUMBER]
319
+
320
+ ### 5.5 Document Distribution and Access
321
+
322
+ **5.5.1 Master Document**
323
+
324
+ - Document Control Coordinator maintains master copy
325
+ - Master stored in: [ELECTRONIC SYSTEM or PHYSICAL LOCATION]
326
+ - Master clearly identified as "MASTER COPY"
327
+ - Master is reference for all distributed copies
328
+
329
+ **5.5.2 Controlled Copies**
330
+
331
+ **Electronic Distribution (Primary Method):**
332
+ - Documents stored in [DOCUMENT MANAGEMENT SYSTEM]
333
+ - Access controlled by user permissions
334
+ - Read-only access for most users
335
+ - Always displays current revision
336
+ - Obsolete revisions automatically removed from access
337
+ - Users may print for immediate use (uncontrolled copies)
338
+
339
+ **Physical Distribution (When Necessary):**
340
+ - Controlled copies issued for specific locations/uses
341
+ - Each copy stamped "CONTROLLED COPY - [Copy Number]"
342
+ - Distribution list maintained showing:
343
+ - Copy number
344
+ - Document number and revision
345
+ - Holder name and location
346
+ - Date issued
347
+ - Holders responsible for maintaining copy in good condition
348
+ - When document revised, Document Control retrieves old copy and issues new copy
349
+
350
+ **5.5.3 Uncontrolled Copies**
351
+
352
+ - Printed for temporary, immediate use
353
+ - Stamped or marked "UNCONTROLLED COPY"
354
+ - User responsible for verifying current revision before each use
355
+ - Should be destroyed after use or within [X] days
356
+
357
+ **5.5.4 Availability at Point of Use**
358
+
359
+ - Current documents available where work is performed
360
+ - Electronic access at workstations
361
+ - Controlled physical copies in areas without electronic access
362
+ - Documents protected from damage, loss, deterioration
363
+
364
+ ### 5.6 Document Changes
365
+
366
+ **5.6.1 Initiating Changes**
367
+
368
+ Changes may be initiated by:
369
+ - Document Owner identifying need
370
+ - CAPA requiring procedure change
371
+ - Internal audit finding
372
+ - Management review action
373
+ - Regulatory or standard update
374
+ - Process improvement
375
+
376
+ **5.6.2 Change Request Process**
377
+
378
+ 1. Requestor:
379
+ - Completes Document Change Request Form (Attachment A)
380
+ - Describes change needed and justification
381
+ - Submits to Document Owner
382
+
383
+ 2. Document Owner:
384
+ - Reviews change request
385
+ - Determines if change appropriate
386
+ - Approves or denies request
387
+ - If approved, initiates document revision
388
+
389
+ **5.6.3 Making Changes**
390
+
391
+ 1. Document Owner:
392
+ - Requests current master from Document Control
393
+ - Creates revised version with changes
394
+ - Increments revision number
395
+ - Updates revision history table
396
+ - Identifies changes in document (change bars, highlights, or summary)
397
+ - Marks as "DRAFT REVISION"
398
+
399
+ 2. Changes reviewed and approved by:
400
+ - Same approval authority as original document
401
+ - UNLESS different approval authority designated by original approver
402
+ - Reviewers have access to previous revision for comparison
403
+
404
+ 3. Approval:
405
+ - New revision approved per Section 5.4.2
406
+ - Previous revision becomes obsolete on effective date of new revision
407
+
408
+ **5.6.4 Indication of Changes**
409
+
410
+ Changes are indicated by:
411
+ - Revision history table (describes nature of changes)
412
+ - Change bars or highlights in document (optional but recommended)
413
+ - Change summary page for significant revisions (optional)
414
+
415
+ **5.6.5 Urgent Changes**
416
+
417
+ For urgent changes affecting safety or regulatory compliance:
418
+ - Expedited review and approval process
419
+ - May use interim method (e.g., hand-written changes with approval)
420
+ - Formal document revision completed as soon as practical
421
+ - Document per CAPA process if change due to nonconformity
422
+
423
+ ### 5.7 Control of Obsolete Documents
424
+
425
+ **5.7.1 When Document Becomes Obsolete**
426
+
427
+ Document becomes obsolete when:
428
+ - New revision approved and becomes effective
429
+ - Document no longer applicable to operations
430
+ - Product discontinued
431
+ - Process changed
432
+
433
+ **5.7.2 Removal from Use**
434
+
435
+ 1. Document Control Coordinator:
436
+ - On effective date of new revision, marks superseded revision as obsolete
437
+ - Removes from electronic document system OR limits access with "OBSOLETE" notation
438
+ - Retrieves physical controlled copies from distribution locations
439
+ - Updates distribution lists
440
+
441
+ 2. Department Managers:
442
+ - Remove obsolete copies from work areas
443
+ - Return to Document Control or destroy
444
+ - Ensure personnel aware of new revision
445
+
446
+ **5.7.3 Retention of Obsolete Documents**
447
+
448
+ Obsolete documents may be retained for:
449
+ - Reference purposes
450
+ - Product investigations
451
+ - Regulatory or legal requirements
452
+ - Historical record
453
+
454
+ **If retained:**
455
+ - Clearly marked "OBSOLETE - FOR REFERENCE ONLY" or "SUPERSEDED"
456
+ - Stored separately from current documents
457
+ - Access restricted and controlled
458
+ - Retained per applicable retention requirements
459
+
460
+ **Retention Locations:**
461
+ - Electronic archive with "OBSOLETE" watermark
462
+ - Separate physical archive area
463
+
464
+ **5.7.4 Prevention of Unintended Use**
465
+
466
+ To prevent unintended use:
467
+ - Physical copies stamped "OBSOLETE" in red
468
+ - Electronic copies watermarked "OBSOLETE"
469
+ - Removed from active work areas
470
+ - Stored in separate archive
471
+ - Training on document control system and how to verify current revision
472
+
473
+ ### 5.8 Control of External Documents
474
+
475
+ **5.8.1 Types of External Documents**
476
+
477
+ External documents include:
478
+ - ISO standards
479
+ - IEC standards
480
+ - FDA regulations and guidance documents
481
+ - EU regulations (MDR, IVDR)
482
+ - Other regulatory requirements
483
+ - Customer specifications
484
+ - Supplier certifications
485
+ - Calibration certificates
486
+ - Reference materials
487
+
488
+ **5.8.2 Identification and Control**
489
+
490
+ 1. Document Owner or requestor:
491
+ - Identifies external document needed
492
+ - Provides copy to Document Control Coordinator
493
+
494
+ 2. Document Control Coordinator:
495
+ - Assigns external document number: EXT-[Category]-[###]
496
+ - Logs in external document register including:
497
+ - Document title and number
498
+ - Source/publisher
499
+ - Date/version
500
+ - Location in organization
501
+ - Responsible person for monitoring updates
502
+ - Files in external document repository
503
+
504
+ **5.8.3 Reviewing for Currency**
505
+
506
+ - Document Owner responsible for monitoring updates to external documents
507
+ - Frequency: [Annually or as notified of updates]
508
+ - Check publisher website for updates
509
+ - Subscribe to update notifications when available
510
+ - When update identified:
511
+ - Obtain new version
512
+ - Provide to Document Control
513
+ - Review for impact on QMS documents
514
+ - Update QMS documents as needed (per CAPA if necessary)
515
+ - Obsolete previous version per Section 5.7
516
+
517
+ **5.8.4 Customer-Supplied Documents**
518
+
519
+ - Customer specifications and drawings controlled as external documents
520
+ - Review for clarity and completeness upon receipt
521
+ - Discrepancies communicated to customer for resolution
522
+ - Controlled per this procedure to ensure current version used
523
+
524
+ ---
525
+
526
+ ## 6. RECORDS
527
+
528
+ Records generated and maintained per this procedure:
529
+
530
+ | Record | Retention Period | Location | Responsible Party |
531
+ |--------|------------------|----------|-------------------|
532
+ | Master Document List | Current + [X] years | [LOCATION/SYSTEM] | Document Control Coordinator |
533
+ | Document Approval Records | [X years or device lifetime] | Document Control System | Document Control Coordinator |
534
+ | Document Revision History | [X years or device lifetime] | Document Control System | Document Control Coordinator |
535
+ | Document Change Requests | [X years] | [LOCATION] | Document Control Coordinator |
536
+ | Distribution Lists | Current + [X] years | [LOCATION] | Document Control Coordinator |
537
+ | Obsolete Document Archive | [Per retention schedule] | [LOCATION] | Document Control Coordinator |
538
+ | External Document Register | Current + [X] years | [LOCATION] | Document Control Coordinator |
539
+
540
+ ---
541
+
542
+ ## 7. REFERENCES
543
+
544
+ - ISO 13485:2016, Clause 4.2.4 - Control of Documents
545
+ - Quality Manual, Section 4.2.4
546
+ - SOP-4.2.5 - Control of Records
547
+ - SOP-6.2 - Training and Competence
548
+
549
+ ---
550
+
551
+ ## 8. ATTACHMENTS
552
+
553
+ **Attachment A:** Document Change Request Form
554
+ **Attachment B:** Document Templates (QM, SOP, WI, Form)
555
+ **Attachment C:** Document Control Flowchart
556
+ **Attachment D:** Master Document List Template
557
+ **Attachment E:** Distribution List Template
558
+
559
+ ---
560
+
561
+ **END OF PROCEDURE**
562
+
563
+ ---
564
+
565
+ **Document Number:** SOP-4.2.4-001
566
+ **Revision:** 00
567
+ **Page:** [X] of [X]