@saibolla/ada 0.1.2

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Files changed (1432) hide show
  1. package/.ada/SYSTEM.md +81 -0
  2. package/.ada/agents/researcher.md +69 -0
  3. package/.ada/agents/reviewer.md +92 -0
  4. package/.ada/agents/verifier.md +45 -0
  5. package/.ada/agents/writer.md +54 -0
  6. package/.ada/settings.json +32 -0
  7. package/.ada/themes/ada.json +85 -0
  8. package/.env.example +31 -0
  9. package/AGENTS.md +79 -0
  10. package/LICENSE +191 -0
  11. package/README.md +188 -0
  12. package/bin/ada.js +26 -0
  13. package/dist/bootstrap/sync.js +143 -0
  14. package/dist/cli.js +404 -0
  15. package/dist/config/paths.js +32 -0
  16. package/dist/index.js +10 -0
  17. package/dist/model/catalog.js +255 -0
  18. package/dist/model/commands.js +180 -0
  19. package/dist/pi/launch.js +33 -0
  20. package/dist/pi/package-presets.js +55 -0
  21. package/dist/pi/runtime.js +81 -0
  22. package/dist/pi/settings.js +108 -0
  23. package/dist/pi/web-access.js +74 -0
  24. package/dist/search/commands.js +12 -0
  25. package/dist/setup/doctor.js +126 -0
  26. package/dist/setup/preview.js +117 -0
  27. package/dist/setup/prompts.js +34 -0
  28. package/dist/setup/setup.js +98 -0
  29. package/dist/setup/update.js +133 -0
  30. package/dist/system/executables.js +38 -0
  31. package/dist/system/node-version.js +31 -0
  32. package/dist/system/open-url.js +35 -0
  33. package/dist/system/promise-polyfill.js +12 -0
  34. package/dist/ui/terminal.js +64 -0
  35. package/dist/web/launch.js +48 -0
  36. package/dist/web-search.js +1 -0
  37. package/extensions/docparser/constants.ts +62 -0
  38. package/extensions/docparser/deps.ts +584 -0
  39. package/extensions/docparser/doctor.ts +353 -0
  40. package/extensions/docparser/index.ts +9 -0
  41. package/extensions/docparser/input.ts +230 -0
  42. package/extensions/docparser/request.ts +67 -0
  43. package/extensions/docparser/schema.ts +82 -0
  44. package/extensions/docparser/tool.ts +305 -0
  45. package/extensions/docparser/types.ts +99 -0
  46. package/extensions/research-tools/alpha.ts +107 -0
  47. package/extensions/research-tools/header.ts +284 -0
  48. package/extensions/research-tools/help.ts +93 -0
  49. package/extensions/research-tools/project-scaffold.ts +64 -0
  50. package/extensions/research-tools/project.ts +123 -0
  51. package/extensions/research-tools/shared.ts +16 -0
  52. package/extensions/research-tools.ts +42 -0
  53. package/logo.d.mts +3 -0
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  55. package/metadata/commands.d.mts +46 -0
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  63. package/prompts/jobs.md +16 -0
  64. package/prompts/litreview.md +18 -0
  65. package/prompts/log.md +14 -0
  66. package/prompts/replicate.md +24 -0
  67. package/prompts/review.md +18 -0
  68. package/prompts/watch.md +16 -0
  69. package/scripts/build-native-bundle.mjs +349 -0
  70. package/scripts/check-node-version.mjs +35 -0
  71. package/scripts/patch-embedded-pi.mjs +588 -0
  72. package/scripts/prepare-runtime-workspace.mjs +162 -0
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+ # Dask Schedulers
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+
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+ ## Overview
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+
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+ Dask provides multiple task schedulers, each suited to different workloads. The scheduler determines how tasks are executed: sequentially, in parallel threads, in parallel processes, or distributed across a cluster.
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+
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+ ## Scheduler Types
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+
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+ ### Single-Machine Schedulers
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+
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+ #### 1. Local Threads (Default)
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+
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+ **Description**: The threaded scheduler executes computations with a local `concurrent.futures.ThreadPoolExecutor`.
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+
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+ **When to Use**:
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+ - Numeric computations in NumPy, Pandas, scikit-learn
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+ - Libraries that release the GIL (Global Interpreter Lock)
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+ - Operations benefit from shared memory access
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+ - Default for Dask Arrays and DataFrames
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+
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+ **Characteristics**:
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+ - Low overhead
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+ - Shared memory between threads
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+ - Best for GIL-releasing operations
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+ - Poor for pure Python code (GIL contention)
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+
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+ **Example**:
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+ ```python
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+ import dask.array as da
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+
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+ # Uses threads by default
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+ x = da.random.random((10000, 10000), chunks=(1000, 1000))
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+ result = x.mean().compute() # Computed with threads
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+ ```
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+
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+ **Explicit Configuration**:
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+ ```python
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+ import dask
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+
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+ # Set globally
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+ dask.config.set(scheduler='threads')
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+
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+ # Or per-compute
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+ result = x.mean().compute(scheduler='threads')
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+ ```
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+
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+ #### 2. Local Processes
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+
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+ **Description**: Multiprocessing scheduler that uses `concurrent.futures.ProcessPoolExecutor`.
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+
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+ **When to Use**:
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+ - Pure Python code with GIL contention
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+ - Text processing and Python collections
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+ - Operations that benefit from process isolation
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+ - CPU-bound Python code
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+
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+ **Characteristics**:
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+ - Bypasses GIL limitations
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+ - Incurs data transfer costs between processes
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+ - Higher overhead than threads
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+ - Ideal for linear workflows with small inputs/outputs
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+
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+ **Example**:
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+ ```python
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+ import dask.bag as db
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+
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+ # Good for Python object processing
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+ bag = db.read_text('data/*.txt')
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+ result = bag.map(complex_python_function).compute(scheduler='processes')
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+ ```
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+
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+ **Explicit Configuration**:
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+ ```python
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+ import dask
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+
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+ # Set globally
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+ dask.config.set(scheduler='processes')
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+
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+ # Or per-compute
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+ result = computation.compute(scheduler='processes')
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+ ```
82
+
83
+ **Limitations**:
84
+ - Data must be serializable (pickle)
85
+ - Overhead from process creation
86
+ - Memory overhead from data copying
87
+
88
+ #### 3. Single Thread (Synchronous)
89
+
90
+ **Description**: The single-threaded synchronous scheduler executes all computations in the local thread with no parallelism at all.
91
+
92
+ **When to Use**:
93
+ - Debugging with pdb
94
+ - Profiling with standard Python tools
95
+ - Understanding errors in detail
96
+ - Development and testing
97
+
98
+ **Characteristics**:
99
+ - No parallelism
100
+ - Easy debugging
101
+ - No overhead
102
+ - Deterministic execution
103
+
104
+ **Example**:
105
+ ```python
106
+ import dask
107
+
108
+ # Enable for debugging
109
+ dask.config.set(scheduler='synchronous')
110
+
111
+ # Now can use pdb
112
+ result = computation.compute() # Runs in single thread
113
+ ```
114
+
115
+ **Debugging with IPython**:
116
+ ```python
117
+ # In IPython/Jupyter
118
+ %pdb on
119
+
120
+ dask.config.set(scheduler='synchronous')
121
+ result = problematic_computation.compute() # Drops into debugger on error
122
+ ```
123
+
124
+ ### Distributed Schedulers
125
+
126
+ #### 4. Local Distributed
127
+
128
+ **Description**: Despite its name, this scheduler runs effectively on personal machines using the distributed scheduler infrastructure.
129
+
130
+ **When to Use**:
131
+ - Need diagnostic dashboard
132
+ - Asynchronous APIs
133
+ - Better data locality handling than multiprocessing
134
+ - Development before scaling to cluster
135
+ - Want distributed features on single machine
136
+
137
+ **Characteristics**:
138
+ - Provides dashboard for monitoring
139
+ - Better memory management
140
+ - More overhead than threads/processes
141
+ - Can scale to cluster later
142
+
143
+ **Example**:
144
+ ```python
145
+ from dask.distributed import Client
146
+ import dask.dataframe as dd
147
+
148
+ # Create local cluster
149
+ client = Client() # Automatically uses all cores
150
+
151
+ # Use distributed scheduler
152
+ ddf = dd.read_csv('data.csv')
153
+ result = ddf.groupby('category').mean().compute()
154
+
155
+ # View dashboard
156
+ print(client.dashboard_link)
157
+
158
+ # Clean up
159
+ client.close()
160
+ ```
161
+
162
+ **Configuration Options**:
163
+ ```python
164
+ # Control resources
165
+ client = Client(
166
+ n_workers=4,
167
+ threads_per_worker=2,
168
+ memory_limit='4GB'
169
+ )
170
+ ```
171
+
172
+ #### 5. Cluster Distributed
173
+
174
+ **Description**: For scaling across multiple machines using the distributed scheduler.
175
+
176
+ **When to Use**:
177
+ - Data exceeds single machine capacity
178
+ - Need computational power beyond one machine
179
+ - Production deployments
180
+ - Cluster computing environments (HPC, cloud)
181
+
182
+ **Characteristics**:
183
+ - Scales to hundreds of machines
184
+ - Requires cluster setup
185
+ - Network communication overhead
186
+ - Advanced features (adaptive scaling, task prioritization)
187
+
188
+ **Example with Dask-Jobqueue (HPC)**:
189
+ ```python
190
+ from dask_jobqueue import SLURMCluster
191
+ from dask.distributed import Client
192
+
193
+ # Create cluster on HPC with SLURM
194
+ cluster = SLURMCluster(
195
+ cores=24,
196
+ memory='100GB',
197
+ walltime='02:00:00',
198
+ queue='regular'
199
+ )
200
+
201
+ # Scale to 10 jobs
202
+ cluster.scale(jobs=10)
203
+
204
+ # Connect client
205
+ client = Client(cluster)
206
+
207
+ # Run computation
208
+ result = computation.compute()
209
+
210
+ client.close()
211
+ ```
212
+
213
+ **Example with Dask on Kubernetes**:
214
+ ```python
215
+ from dask_kubernetes import KubeCluster
216
+ from dask.distributed import Client
217
+
218
+ cluster = KubeCluster()
219
+ cluster.scale(20) # 20 workers
220
+
221
+ client = Client(cluster)
222
+ result = computation.compute()
223
+
224
+ client.close()
225
+ ```
226
+
227
+ ## Scheduler Configuration
228
+
229
+ ### Global Configuration
230
+
231
+ ```python
232
+ import dask
233
+
234
+ # Set scheduler globally for session
235
+ dask.config.set(scheduler='threads')
236
+ dask.config.set(scheduler='processes')
237
+ dask.config.set(scheduler='synchronous')
238
+ ```
239
+
240
+ ### Context Manager
241
+
242
+ ```python
243
+ import dask
244
+
245
+ # Temporarily use different scheduler
246
+ with dask.config.set(scheduler='processes'):
247
+ result = computation.compute()
248
+
249
+ # Back to default scheduler
250
+ result2 = computation2.compute()
251
+ ```
252
+
253
+ ### Per-Compute
254
+
255
+ ```python
256
+ # Specify scheduler per compute call
257
+ result = computation.compute(scheduler='threads')
258
+ result = computation.compute(scheduler='processes')
259
+ result = computation.compute(scheduler='synchronous')
260
+ ```
261
+
262
+ ### Distributed Client
263
+
264
+ ```python
265
+ from dask.distributed import Client
266
+
267
+ # Using client automatically sets distributed scheduler
268
+ client = Client()
269
+
270
+ # All computations use distributed scheduler
271
+ result = computation.compute()
272
+
273
+ client.close()
274
+ ```
275
+
276
+ ## Choosing the Right Scheduler
277
+
278
+ ### Decision Matrix
279
+
280
+ | Workload Type | Recommended Scheduler | Rationale |
281
+ |--------------|----------------------|-----------|
282
+ | NumPy/Pandas operations | Threads (default) | GIL-releasing, shared memory |
283
+ | Pure Python objects | Processes | Avoids GIL contention |
284
+ | Text/log processing | Processes | Python-heavy operations |
285
+ | Debugging | Synchronous | Easy debugging, deterministic |
286
+ | Need dashboard | Local Distributed | Monitoring and diagnostics |
287
+ | Multi-machine | Cluster Distributed | Exceeds single machine capacity |
288
+ | Small data, quick tasks | Threads | Lowest overhead |
289
+ | Large data, single machine | Local Distributed | Better memory management |
290
+
291
+ ### Performance Considerations
292
+
293
+ **Threads**:
294
+ - Overhead: ~10 µs per task
295
+ - Best for: Numeric operations
296
+ - Memory: Shared
297
+ - GIL: Affected by GIL
298
+
299
+ **Processes**:
300
+ - Overhead: ~10 ms per task
301
+ - Best for: Python operations
302
+ - Memory: Copied between processes
303
+ - GIL: Not affected
304
+
305
+ **Synchronous**:
306
+ - Overhead: ~1 µs per task
307
+ - Best for: Debugging
308
+ - Memory: No parallelism
309
+ - GIL: Not relevant
310
+
311
+ **Distributed**:
312
+ - Overhead: ~1 ms per task
313
+ - Best for: Complex workflows, monitoring
314
+ - Memory: Managed by scheduler
315
+ - GIL: Workers can use threads or processes
316
+
317
+ ## Thread Configuration for Distributed Scheduler
318
+
319
+ ### Setting Thread Count
320
+
321
+ ```python
322
+ from dask.distributed import Client
323
+
324
+ # Control thread/worker configuration
325
+ client = Client(
326
+ n_workers=4, # Number of worker processes
327
+ threads_per_worker=2 # Threads per worker process
328
+ )
329
+ ```
330
+
331
+ ### Recommended Configuration
332
+
333
+ **For Numeric Workloads**:
334
+ - Aim for roughly 4 threads per process
335
+ - Balance between parallelism and overhead
336
+ - Example: 8 cores → 2 workers with 4 threads each
337
+
338
+ **For Python Workloads**:
339
+ - Use more workers with fewer threads
340
+ - Example: 8 cores → 8 workers with 1 thread each
341
+
342
+ ### Environment Variables
343
+
344
+ ```bash
345
+ # Set thread count via environment
346
+ export DASK_NUM_WORKERS=4
347
+ export DASK_THREADS_PER_WORKER=2
348
+
349
+ # Or via config file
350
+ ```
351
+
352
+ ## Common Patterns
353
+
354
+ ### Development to Production
355
+
356
+ ```python
357
+ # Development: Use local distributed for testing
358
+ from dask.distributed import Client
359
+ client = Client(processes=False) # In-process for debugging
360
+
361
+ # Production: Scale to cluster
362
+ from dask.distributed import Client
363
+ client = Client('scheduler-address:8786')
364
+ ```
365
+
366
+ ### Mixed Workloads
367
+
368
+ ```python
369
+ import dask
370
+ import dask.dataframe as dd
371
+
372
+ # Use threads for DataFrame operations
373
+ ddf = dd.read_parquet('data.parquet')
374
+ result1 = ddf.mean().compute(scheduler='threads')
375
+
376
+ # Use processes for Python code
377
+ import dask.bag as db
378
+ bag = db.read_text('logs/*.txt')
379
+ result2 = bag.map(parse_log).compute(scheduler='processes')
380
+ ```
381
+
382
+ ### Debugging Workflow
383
+
384
+ ```python
385
+ import dask
386
+
387
+ # Step 1: Debug with synchronous scheduler
388
+ dask.config.set(scheduler='synchronous')
389
+ result = problematic_computation.compute()
390
+
391
+ # Step 2: Test with threads
392
+ dask.config.set(scheduler='threads')
393
+ result = computation.compute()
394
+
395
+ # Step 3: Scale with distributed
396
+ from dask.distributed import Client
397
+ client = Client()
398
+ result = computation.compute()
399
+ ```
400
+
401
+ ## Monitoring and Diagnostics
402
+
403
+ ### Dashboard Access (Distributed Only)
404
+
405
+ ```python
406
+ from dask.distributed import Client
407
+
408
+ client = Client()
409
+
410
+ # Get dashboard URL
411
+ print(client.dashboard_link)
412
+ # Opens dashboard in browser showing:
413
+ # - Task progress
414
+ # - Worker status
415
+ # - Memory usage
416
+ # - Task stream
417
+ # - Resource utilization
418
+ ```
419
+
420
+ ### Performance Profiling
421
+
422
+ ```python
423
+ # Profile computation
424
+ from dask.distributed import Client
425
+
426
+ client = Client()
427
+ result = computation.compute()
428
+
429
+ # Get performance report
430
+ client.profile(filename='profile.html')
431
+ ```
432
+
433
+ ### Resource Monitoring
434
+
435
+ ```python
436
+ # Check worker info
437
+ client.scheduler_info()
438
+
439
+ # Get current tasks
440
+ client.who_has()
441
+
442
+ # Memory usage
443
+ client.run(lambda: psutil.virtual_memory().percent)
444
+ ```
445
+
446
+ ## Advanced Configuration
447
+
448
+ ### Custom Executors
449
+
450
+ ```python
451
+ from concurrent.futures import ThreadPoolExecutor
452
+ import dask
453
+
454
+ # Use custom thread pool
455
+ with ThreadPoolExecutor(max_workers=4) as executor:
456
+ dask.config.set(pool=executor)
457
+ result = computation.compute(scheduler='threads')
458
+ ```
459
+
460
+ ### Adaptive Scaling (Distributed)
461
+
462
+ ```python
463
+ from dask.distributed import Client
464
+
465
+ client = Client()
466
+
467
+ # Enable adaptive scaling
468
+ client.cluster.adapt(minimum=2, maximum=10)
469
+
470
+ # Cluster scales based on workload
471
+ result = computation.compute()
472
+ ```
473
+
474
+ ### Worker Plugins
475
+
476
+ ```python
477
+ from dask.distributed import Client, WorkerPlugin
478
+
479
+ class CustomPlugin(WorkerPlugin):
480
+ def setup(self, worker):
481
+ # Initialize worker-specific resources
482
+ worker.custom_resource = initialize_resource()
483
+
484
+ client = Client()
485
+ client.register_worker_plugin(CustomPlugin())
486
+ ```
487
+
488
+ ## Troubleshooting
489
+
490
+ ### Slow Performance with Threads
491
+ **Problem**: Pure Python code slow with threaded scheduler
492
+ **Solution**: Switch to processes or distributed scheduler
493
+
494
+ ### Memory Errors with Processes
495
+ **Problem**: Data too large to pickle/copy between processes
496
+ **Solution**: Use threaded or distributed scheduler
497
+
498
+ ### Debugging Difficult
499
+ **Problem**: Can't use pdb with parallel schedulers
500
+ **Solution**: Use synchronous scheduler for debugging
501
+
502
+ ### Task Overhead High
503
+ **Problem**: Many tiny tasks causing overhead
504
+ **Solution**: Use threaded scheduler (lowest overhead) or increase chunk sizes