@pikaa-ai/pikaa 0.3.1 → 0.3.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cli.js +1169 -601
- package/dist/index.js +525 -204
- package/package.json +5 -3
- package/skills/adaptyv/references/api-endpoints.md +0 -690
- package/skills/aeon/references/anomaly_detection.md +0 -154
- package/skills/aeon/references/classification.md +0 -144
- package/skills/aeon/references/clustering.md +0 -123
- package/skills/aeon/references/datasets_benchmarking.md +0 -392
- package/skills/aeon/references/distances.md +0 -256
- package/skills/aeon/references/forecasting.md +0 -109
- package/skills/aeon/references/networks.md +0 -289
- package/skills/aeon/references/regression.md +0 -118
- package/skills/aeon/references/segmentation.md +0 -163
- package/skills/aeon/references/similarity_search.md +0 -187
- package/skills/aeon/references/transformations.md +0 -246
- package/skills/analytical-method-validation/assets/validation-protocol-template.md +0 -106
- package/skills/analytical-method-validation/assets/validation-report-template.md +0 -116
- package/skills/analytical-method-validation/references/compendial-and-clsi.md +0 -96
- package/skills/analytical-method-validation/references/framework-selection.md +0 -87
- package/skills/analytical-method-validation/references/ich-m10-bioanalytical.md +0 -123
- package/skills/analytical-method-validation/references/ich-q2r2.md +0 -229
- package/skills/analytical-method-validation/references/source-ledger.md +0 -125
- package/skills/analytical-method-validation/references/statistics.md +0 -209
- package/skills/analytical-method-validation/scripts/_catalog.py +0 -499
- package/skills/analytical-method-validation/scripts/_common.py +0 -955
- package/skills/analytical-method-validation/scripts/check_accuracy_precision.py +0 -328
- package/skills/analytical-method-validation/scripts/check_bioanalytical_run.py +0 -293
- package/skills/analytical-method-validation/scripts/check_detection_limits.py +0 -310
- package/skills/analytical-method-validation/scripts/check_response.py +0 -243
- package/skills/analytical-method-validation/scripts/compare_methods.py +0 -215
- package/skills/analytical-method-validation/scripts/plan_validation.py +0 -381
- package/skills/anndata/references/best_practices.md +0 -532
- package/skills/anndata/references/concatenation.md +0 -399
- package/skills/anndata/references/data_structure.md +0 -314
- package/skills/anndata/references/io_operations.md +0 -466
- package/skills/anndata/references/manipulation.md +0 -516
- package/skills/arbor/references/arbor-upstream.md +0 -91
- package/skills/arbor/references/executor-brief.md +0 -68
- package/skills/arbor/references/htr-methodology.md +0 -177
- package/skills/arbor/references/report-template.md +0 -39
- package/skills/arbor/scripts/tree.py +0 -564
- package/skills/arboreto/references/algorithms.md +0 -152
- package/skills/arboreto/references/basic_inference.md +0 -181
- package/skills/arboreto/references/distributed_computing.md +0 -242
- package/skills/arboreto/scripts/basic_grn_inference.py +0 -107
- package/skills/astropy/references/coordinates.md +0 -280
- package/skills/astropy/references/cosmology.md +0 -309
- package/skills/astropy/references/fits.md +0 -398
- package/skills/astropy/references/tables.md +0 -495
- package/skills/astropy/references/time.md +0 -412
- package/skills/astropy/references/units.md +0 -178
- package/skills/astropy/references/wcs_and_other_modules.md +0 -377
- package/skills/autoskill/config.yaml +0 -53
- package/skills/autoskill/references/https-proxy.md +0 -62
- package/skills/autoskill/references/screenpipe-config.yaml +0 -61
- package/skills/autoskill/scripts/autoskill.py +0 -35
- package/skills/autoskill/scripts/backends.py +0 -116
- package/skills/autoskill/scripts/cluster.py +0 -54
- package/skills/autoskill/scripts/doctor.py +0 -108
- package/skills/autoskill/scripts/fetch_window.py +0 -33
- package/skills/autoskill/scripts/match_skills.py +0 -46
- package/skills/autoskill/scripts/promote.py +0 -58
- package/skills/autoskill/scripts/redact.py +0 -40
- package/skills/autoskill/scripts/run.py +0 -194
- package/skills/autoskill/scripts/synthesize.py +0 -72
- package/skills/benchling-integration/references/api_endpoints.md +0 -883
- package/skills/benchling-integration/references/authentication.md +0 -390
- package/skills/benchling-integration/references/core_capabilities.md +0 -355
- package/skills/benchling-integration/references/eventbridge.md +0 -255
- package/skills/benchling-integration/references/sdk_reference.md +0 -772
- package/skills/bids/references/beps.yml +0 -637
- package/skills/bids/references/bids_schema.json +0 -21015
- package/skills/bids/references/bids_specification.md +0 -165
- package/skills/bids/references/conversion_tools.md +0 -475
- package/skills/bids/references/core_workflows.md +0 -552
- package/skills/bids/references/metadata_fields.md +0 -365
- package/skills/bids/scripts/update_schema.py +0 -89
- package/skills/biopython/references/advanced.md +0 -580
- package/skills/biopython/references/alignment.md +0 -377
- package/skills/biopython/references/blast.md +0 -463
- package/skills/biopython/references/databases.md +0 -492
- package/skills/biopython/references/phylogenetics.md +0 -566
- package/skills/biopython/references/sequence_io.md +0 -289
- package/skills/biopython/references/structure.md +0 -564
- package/skills/bioservices/references/identifier_mapping.md +0 -685
- package/skills/bioservices/references/services_reference.md +0 -638
- package/skills/bioservices/references/workflow_patterns.md +0 -813
- package/skills/bioservices/scripts/batch_id_converter.py +0 -347
- package/skills/bioservices/scripts/compound_cross_reference.py +0 -387
- package/skills/bioservices/scripts/pathway_analysis.py +0 -309
- package/skills/bioservices/scripts/protein_analysis_workflow.py +0 -441
- package/skills/bulk-rnaseq/references/counts-and-handoff.md +0 -91
- package/skills/bulk-rnaseq/references/design-and-qc.md +0 -68
- package/skills/bulk-rnaseq/references/upstream-manual.md +0 -128
- package/skills/bulk-rnaseq/references/upstream-nfcore.md +0 -108
- package/skills/bulk-rnaseq/scripts/build_counts_matrix.py +0 -203
- package/skills/bulk-rnaseq/scripts/validate_samplesheet.py +0 -206
- package/skills/cellxgene-census/references/census_schema.md +0 -218
- package/skills/cellxgene-census/references/common_patterns.md +0 -368
- package/skills/cellxgene-census/references/core_workflow_patterns.md +0 -297
- package/skills/cirq/references/building.md +0 -307
- package/skills/cirq/references/experiments.md +0 -572
- package/skills/cirq/references/hardware.md +0 -527
- package/skills/cirq/references/noise.md +0 -514
- package/skills/cirq/references/simulation.md +0 -353
- package/skills/cirq/references/transformation.md +0 -416
- package/skills/citation-management/assets/bibtex_template.bib +0 -264
- package/skills/citation-management/assets/citation_checklist.md +0 -386
- package/skills/citation-management/references/best_practices.md +0 -91
- package/skills/citation-management/references/bibtex_formatting.md +0 -908
- package/skills/citation-management/references/citation_validation.md +0 -835
- package/skills/citation-management/references/core_workflow.md +0 -569
- package/skills/citation-management/references/example_workflows.md +0 -126
- package/skills/citation-management/references/google_scholar_search.md +0 -732
- package/skills/citation-management/references/metadata_extraction.md +0 -870
- package/skills/citation-management/references/pubmed_search.md +0 -839
- package/skills/citation-management/references/script_reference.md +0 -250
- package/skills/citation-management/references/search_strategies.md +0 -110
- package/skills/citation-management/scripts/_common.py +0 -331
- package/skills/citation-management/scripts/doi_to_bibtex.py +0 -204
- package/skills/citation-management/scripts/extract_metadata.py +0 -690
- package/skills/citation-management/scripts/format_bibtex.py +0 -356
- package/skills/citation-management/scripts/search_google_scholar.py +0 -268
- package/skills/citation-management/scripts/search_openalex.py +0 -297
- package/skills/citation-management/scripts/search_pubmed.py +0 -419
- package/skills/citation-management/scripts/validate_citations.py +0 -688
- package/skills/clinical-decision-support/assets/aggregate_cohort_table_template.json +0 -114
- package/skills/clinical-decision-support/assets/aggregate_model_evaluation_template.json +0 -115
- package/skills/clinical-decision-support/assets/artifact_intended_use_template.json +0 -81
- package/skills/clinical-decision-support/assets/decision_logic_traceability_template.json +0 -108
- package/skills/clinical-decision-support/assets/deidentification_checklist_template.json +0 -176
- package/skills/clinical-decision-support/assets/evidence_profile_template.json +0 -139
- package/skills/clinical-decision-support/assets/survival_analysis_plan_template.json +0 -134
- package/skills/clinical-decision-support/references/cohort_evaluation.md +0 -142
- package/skills/clinical-decision-support/references/decision_logic_traceability.md +0 -146
- package/skills/clinical-decision-support/references/evidence_profiles.md +0 -153
- package/skills/clinical-decision-support/references/model_biomarker_evaluation.md +0 -152
- package/skills/clinical-decision-support/references/privacy_and_disclosure.md +0 -144
- package/skills/clinical-decision-support/references/regulatory_and_governance.md +0 -104
- package/skills/clinical-decision-support/references/safety_and_scope.md +0 -103
- package/skills/clinical-decision-support/references/security_validation.md +0 -60
- package/skills/clinical-decision-support/references/sources.md +0 -119
- package/skills/clinical-decision-support/references/study_reporting.md +0 -134
- package/skills/clinical-decision-support/references/survival_analysis.md +0 -156
- package/skills/clinical-decision-support/scripts/_common.py +0 -223
- package/skills/clinical-decision-support/scripts/cohort_table_generator.py +0 -288
- package/skills/clinical-decision-support/scripts/decision_logic_traceability.py +0 -313
- package/skills/clinical-decision-support/scripts/deidentification_checklist.py +0 -260
- package/skills/clinical-decision-support/scripts/evidence_profile_check.py +0 -259
- package/skills/clinical-decision-support/scripts/model_biomarker_evaluation.py +0 -345
- package/skills/clinical-decision-support/scripts/survival_plan_validator.py +0 -294
- package/skills/clinical-decision-support/scripts/validate_cds_artifact.py +0 -269
- package/skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv +0 -1
- package/skills/clinical-reports/assets/case_report_template.json +0 -43
- package/skills/clinical-reports/assets/clinical_trial_csr_template.json +0 -51
- package/skills/clinical-reports/assets/clinical_trial_results_template.json +0 -66
- package/skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json +0 -49
- package/skills/clinical-reports/assets/consistency_manifest_template.json +0 -15
- package/skills/clinical-reports/assets/deidentification_process_checklist.json +0 -56
- package/skills/clinical-reports/assets/lab_report_template.json +0 -36
- package/skills/clinical-reports/assets/pathology_report_template.json +0 -36
- package/skills/clinical-reports/assets/provenance_manifest_template.json +0 -17
- package/skills/clinical-reports/assets/quality_review_checklist.json +0 -34
- package/skills/clinical-reports/assets/radiology_report_template.json +0 -34
- package/skills/clinical-reports/assets/research_summary_template.json +0 -36
- package/skills/clinical-reports/assets/terminology_manifest_template.json +0 -11
- package/skills/clinical-reports/assets/trial_protocol_reporting_checklist.json +0 -70
- package/skills/clinical-reports/references/case_report_guidelines.md +0 -72
- package/skills/clinical-reports/references/clinical_trial_reporting.md +0 -97
- package/skills/clinical-reports/references/data_presentation.md +0 -92
- package/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -76
- package/skills/clinical-reports/references/medical_terminology.md +0 -84
- package/skills/clinical-reports/references/privacy_and_deidentification.md +0 -84
- package/skills/clinical-reports/references/professional_review.md +0 -78
- package/skills/clinical-reports/references/report_type_routing.md +0 -57
- package/skills/clinical-reports/references/safety_reporting.md +0 -109
- package/skills/clinical-reports/references/sources.md +0 -75
- package/skills/clinical-reports/scripts/_common.py +0 -263
- package/skills/clinical-reports/scripts/check_deidentification.py +0 -298
- package/skills/clinical-reports/scripts/consistency_checker.py +0 -390
- package/skills/clinical-reports/scripts/format_adverse_events.py +0 -455
- package/skills/clinical-reports/scripts/generate_report_template.py +0 -115
- package/skills/clinical-reports/scripts/provenance_validator.py +0 -263
- package/skills/clinical-reports/scripts/terminology_validator.py +0 -277
- package/skills/clinical-reports/scripts/validate_case_report.py +0 -278
- package/skills/clinical-reports/scripts/validate_trial_report.py +0 -534
- package/skills/cobrapy/references/api_quick_reference.md +0 -665
- package/skills/cobrapy/references/workflows.md +0 -600
- package/skills/consciousness-council/references/advanced-configurations.md +0 -96
- package/skills/dask/references/arrays.md +0 -495
- package/skills/dask/references/bags.md +0 -468
- package/skills/dask/references/best-practices.md +0 -277
- package/skills/dask/references/dataframes.md +0 -370
- package/skills/dask/references/futures.md +0 -541
- package/skills/dask/references/schedulers.md +0 -517
- package/skills/database-lookup/references/addgene.md +0 -38
- package/skills/database-lookup/references/alphafold.md +0 -52
- package/skills/database-lookup/references/alphavantage.md +0 -261
- package/skills/database-lookup/references/bea.md +0 -409
- package/skills/database-lookup/references/bindingdb.md +0 -85
- package/skills/database-lookup/references/biogrid.md +0 -110
- package/skills/database-lookup/references/bls.md +0 -235
- package/skills/database-lookup/references/brenda.md +0 -71
- package/skills/database-lookup/references/cbioportal.md +0 -206
- package/skills/database-lookup/references/census.md +0 -251
- package/skills/database-lookup/references/chebi.md +0 -103
- package/skills/database-lookup/references/chembl.md +0 -80
- package/skills/database-lookup/references/clinicaltrials.md +0 -86
- package/skills/database-lookup/references/clinpgx.md +0 -64
- package/skills/database-lookup/references/clinvar.md +0 -91
- package/skills/database-lookup/references/cod.md +0 -121
- package/skills/database-lookup/references/cosmic.md +0 -59
- package/skills/database-lookup/references/dailymed.md +0 -65
- package/skills/database-lookup/references/database_selection_guide.md +0 -166
- package/skills/database-lookup/references/datacommons.md +0 -237
- package/skills/database-lookup/references/dbsnp.md +0 -143
- package/skills/database-lookup/references/disgenet.md +0 -52
- package/skills/database-lookup/references/drugbank.md +0 -54
- package/skills/database-lookup/references/ecb.md +0 -191
- package/skills/database-lookup/references/emdb.md +0 -37
- package/skills/database-lookup/references/ena.md +0 -372
- package/skills/database-lookup/references/encode.md +0 -47
- package/skills/database-lookup/references/ensembl.md +0 -539
- package/skills/database-lookup/references/epa.md +0 -232
- package/skills/database-lookup/references/eurostat.md +0 -237
- package/skills/database-lookup/references/fda.md +0 -64
- package/skills/database-lookup/references/federal-reserve.md +0 -216
- package/skills/database-lookup/references/fred.md +0 -297
- package/skills/database-lookup/references/gene-ontology.md +0 -147
- package/skills/database-lookup/references/geo.md +0 -130
- package/skills/database-lookup/references/gnomad.md +0 -93
- package/skills/database-lookup/references/gtex.md +0 -136
- package/skills/database-lookup/references/gwas-catalog.md +0 -46
- package/skills/database-lookup/references/hca.md +0 -35
- package/skills/database-lookup/references/hpo.md +0 -48
- package/skills/database-lookup/references/human-protein-atlas.md +0 -57
- package/skills/database-lookup/references/interpro.md +0 -120
- package/skills/database-lookup/references/jaspar.md +0 -50
- package/skills/database-lookup/references/kegg.md +0 -78
- package/skills/database-lookup/references/lincs-l1000.md +0 -68
- package/skills/database-lookup/references/materials-project.md +0 -123
- package/skills/database-lookup/references/metabolomics-workbench.md +0 -98
- package/skills/database-lookup/references/monarch.md +0 -46
- package/skills/database-lookup/references/mousemine.md +0 -40
- package/skills/database-lookup/references/nasa-exoplanet-archive.md +0 -112
- package/skills/database-lookup/references/nasa.md +0 -121
- package/skills/database-lookup/references/ncbi-gene.md +0 -64
- package/skills/database-lookup/references/ncbi-protein.md +0 -104
- package/skills/database-lookup/references/ncbi-taxonomy.md +0 -121
- package/skills/database-lookup/references/nist.md +0 -105
- package/skills/database-lookup/references/noaa.md +0 -199
- package/skills/database-lookup/references/omim.md +0 -114
- package/skills/database-lookup/references/opentargets.md +0 -459
- package/skills/database-lookup/references/openweathermap.md +0 -255
- package/skills/database-lookup/references/pdb.md +0 -121
- package/skills/database-lookup/references/pride.md +0 -74
- package/skills/database-lookup/references/pubchem.md +0 -145
- package/skills/database-lookup/references/quickgo.md +0 -45
- package/skills/database-lookup/references/reactome.md +0 -140
- package/skills/database-lookup/references/retrieval-contract.md +0 -123
- package/skills/database-lookup/references/rummageo.md +0 -32
- package/skills/database-lookup/references/sdss.md +0 -130
- package/skills/database-lookup/references/sec-edgar.md +0 -315
- package/skills/database-lookup/references/simbad.md +0 -405
- package/skills/database-lookup/references/sra.md +0 -149
- package/skills/database-lookup/references/string.md +0 -283
- package/skills/database-lookup/references/tcga-gdc.md +0 -58
- package/skills/database-lookup/references/treasury.md +0 -215
- package/skills/database-lookup/references/ucsc-genome.md +0 -135
- package/skills/database-lookup/references/uniprot.md +0 -283
- package/skills/database-lookup/references/usgs.md +0 -260
- package/skills/database-lookup/references/uspto.md +0 -130
- package/skills/database-lookup/references/who.md +0 -283
- package/skills/database-lookup/references/worldbank.md +0 -239
- package/skills/database-lookup/references/zinc.md +0 -202
- package/skills/datamol/references/conformers_module.md +0 -131
- package/skills/datamol/references/core_api.md +0 -136
- package/skills/datamol/references/core_workflows.md +0 -451
- package/skills/datamol/references/descriptors_viz.md +0 -195
- package/skills/datamol/references/fragments_scaffolds.md +0 -174
- package/skills/datamol/references/io_module.md +0 -112
- package/skills/datamol/references/reactions_data.md +0 -218
- package/skills/datamol/references/workflow_patterns.md +0 -104
- package/skills/deepchem/references/api_reference.md +0 -305
- package/skills/deepchem/references/core_capabilities.md +0 -276
- package/skills/deepchem/references/typical_workflows.md +0 -109
- package/skills/deepchem/references/workflows.md +0 -491
- package/skills/deepchem/scripts/graph_neural_network.py +0 -350
- package/skills/deepchem/scripts/predict_solubility.py +0 -223
- package/skills/deepchem/scripts/transfer_learning.py +0 -443
- package/skills/deepspot-m/references/api.md +0 -186
- package/skills/deepspot-m/references/whole_slide.md +0 -174
- package/skills/deeptools/assets/quick_reference.md +0 -65
- package/skills/deeptools/references/core_workflows.md +0 -134
- package/skills/deeptools/references/effective_genome_sizes.md +0 -118
- package/skills/deeptools/references/normalization_methods.md +0 -424
- package/skills/deeptools/references/tools_reference.md +0 -569
- package/skills/deeptools/references/workflows.md +0 -476
- package/skills/deeptools/scripts/validate_files.py +0 -195
- package/skills/deeptools/scripts/workflow_generator.py +0 -520
- package/skills/depmap/references/dependency_analysis.md +0 -178
- package/skills/dhdna-profiler/references/advanced-profiling.md +0 -72
- package/skills/diffdock/assets/batch_template.csv +0 -4
- package/skills/diffdock/assets/custom_inference_config.yaml +0 -94
- package/skills/diffdock/references/confidence_and_limitations.md +0 -182
- package/skills/diffdock/references/parameters_reference.md +0 -173
- package/skills/diffdock/references/workflows_examples.md +0 -401
- package/skills/diffdock/scripts/analyze_results.py +0 -346
- package/skills/diffdock/scripts/prepare_batch_csv.py +0 -257
- package/skills/diffdock/scripts/setup_check.py +0 -283
- package/skills/dnanexus-integration/references/app-development.md +0 -371
- package/skills/dnanexus-integration/references/authentication.md +0 -226
- package/skills/dnanexus-integration/references/configuration.md +0 -444
- package/skills/dnanexus-integration/references/data-operations.md +0 -474
- package/skills/dnanexus-integration/references/job-execution.md +0 -482
- package/skills/dnanexus-integration/references/operations-and-troubleshooting.md +0 -506
- package/skills/dnanexus-integration/references/python-sdk.md +0 -548
- package/skills/dnanexus-integration/references/sources.md +0 -168
- package/skills/dnanexus-integration/references/workflow-languages.md +0 -292
- package/skills/dnanexus-integration/scripts/inspect_dxpy.py +0 -366
- package/skills/dnanexus-integration/scripts/validate_dxapp.py +0 -796
- package/skills/docx/LICENSE.txt +0 -30
- package/skills/docx/scripts/__init__.py +0 -1
- package/skills/docx/scripts/accept_changes.py +0 -135
- package/skills/docx/scripts/comment.py +0 -368
- package/skills/docx/scripts/merge_runs.py +0 -310
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- package/skills/xlsx/scripts/office/schemas/microsoft/wml-cid-2016.xsd +0 -13
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-sdtdatahash-2020.xsd +0 -4
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-symex-2015.xsd +0 -8
- package/skills/xlsx/scripts/office/soffice.py +0 -232
- package/skills/xlsx/scripts/office/validate.py +0 -173
- package/skills/xlsx/scripts/office/validators/__init__.py +0 -15
- package/skills/xlsx/scripts/office/validators/base.py +0 -875
- package/skills/xlsx/scripts/office/validators/docx.py +0 -466
- package/skills/xlsx/scripts/office/validators/pptx.py +0 -441
- package/skills/xlsx/scripts/office/validators/redlining.py +0 -299
- package/skills/xlsx/scripts/recalc.py +0 -308
- package/skills/zarr-python/references/api_reference.md +0 -162
- package/skills/zarr-python/references/chunking_and_compression.md +0 -138
- package/skills/zarr-python/references/integration.md +0 -147
- package/skills/zarr-python/references/performance_and_patterns.md +0 -198
- package/skills/zarr-python/references/storage_backends.md +0 -91
- package/skills/zarr-python/references/v3_migration.md +0 -127
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# Compendial, CLSI, and ISO Sources (No Standard Text)
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Research basis: **2026-07-27**. This reference identifies documents, their scope, and where to obtain
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them. **It does not reproduce their requirements, thresholds, or study designs**, because they are
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copyrighted and paywalled.
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## Copyright boundary
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USP–NF general chapters, CLSI documents, and ISO/IEC standards are copyrighted works sold by their
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publishers. Do not ask an agent to retrieve, transcribe, summarise clause-by-clause, reconstruct, or
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store their text. Vendor application notes and training decks that quote them are equally
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constrained, and a paraphrase that carries the same numbers is still a reproduction of the
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substantive content.
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The practical consequence: **when a numeric criterion or a study design lives in one of these
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documents, read it from the authorised copy.** An agent asked for "the USP <621> tailing factor
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limit" or "the CLSI EP15 number of days" will produce a plausible number. Plausible is not the same
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as correct, and the difference is discovered at audit.
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Record publisher, title, designation, edition, amendments, authorised location, access date, and
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review date in the laboratory's controlled source register.
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## USP–NF general chapters
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| Chapter | Title | Scope |
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| --- | --- | --- |
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| `<1220>` | Analytical Procedure Life Cycle | Three-stage lifecycle: procedure design (Stage 1), performance qualification (Stage 2), ongoing performance verification (Stage 3), organised around an analytical target profile. Official 1 May 2022 (incorporated into USP–NF 2022 Issue 1 on 1 Nov 2021). Integrates the concepts previously spread across `<1224>`, `<1225>`, and `<1226>`. |
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| `<1225>` | Validation of Compendial Procedures | Validation of non-compendial procedures, and of compendial procedures used outside their stated scope. Stage 2 activity under `<1220>`. |
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| `<1226>` | Verification of Compendial Procedures | Assessment of selected performance characteristics showing a compendial procedure works under actual conditions of use. **Verification is not revalidation** and does not repeat the full validation. |
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| `<1224>` | Transfer of Analytical Procedures | Transfer between laboratories. |
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| `<1010>` | Analytical Data — Interpretation and Treatment | Statistical treatment of analytical data. |
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| `<621>` | Chromatography | System suitability and chromatographic operating parameters, including the extent to which a compendial procedure may be adjusted without triggering revalidation. |
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| `<711>` / `<1092>` | Dissolution / The Dissolution Procedure | Dissolution testing and development/validation of the procedure. |
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Obtain from the USP–NF (<https://www.uspnf.com/>). Regional pharmacopoeias — Ph. Eur., JP, ChP —
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carry their own general chapters; check which pharmacopoeia the specification cites, because
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adjustment allowances and system suitability requirements differ between them.
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**The `<1226>` decision.** Verification applies when using a compendial procedure as written and
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within its scope. Two situations push you back to `<1225>` validation: using the procedure outside
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its stated scope (a different matrix, a different dosage form, a concentration range it does not
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cover), or modifying it beyond the adjustments the relevant chapter permits. Getting this wrong in
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either direction is expensive — unnecessary full validation, or an unsupported claim of verification.
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## CLSI EP series
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Designations and titles below were taken from clsi.org listings and secondary sources on the
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research date. **Editions change; confirm the current edition on <https://clsi.org/> before designing
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a study.** Marked `[confirm]` where the edition was not read from the publisher directly.
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| Designation | Subject | Note |
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| --- | --- | --- |
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| EP05 | Evaluation of precision of quantitative measurement procedures | Establishment of precision; the multi-day/multi-run designs. `[confirm edition]` |
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| EP06 | Evaluation of linearity of quantitative measurement procedures | 2nd edition reported. `[confirm edition]` |
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| EP07 | Interference testing in clinical chemistry | Screening, quantifying and confirming interferents; verifying manufacturer interference claims. 3rd edition reported. `[confirm edition]` |
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| EP09 | Measurement procedure comparison and bias estimation using patient samples | The method-comparison document. 3rd edition reported. `[confirm edition]` |
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| EP15 | User verification of precision and estimation of bias | The short study a laboratory runs to verify a manufacturer's claims. 3rd edition reported. `[confirm edition]` |
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| EP17 | Evaluation of detection capability | Limit of blank, limit of detection, limit of quantitation; verification of manufacturer claims. `[confirm edition]` |
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| EP25 | Evaluation of stability of in vitro diagnostic reagents | `[confirm edition]` |
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| EP28 | Defining, establishing, and verifying reference intervals | Formerly designated C28. An implementation guide (EP28IG) also exists. `[confirm edition]` |
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**Vocabulary.** CLSI distinguishes *limit of blank*, *limit of detection*, and *limit of quantitation*
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as three separate quantities with separate protocols. This is not the same taxonomy as ICH Q2(R2)'s
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detection limit and quantitation limit, and the two should not be translated into each other
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casually — the underlying definitions and the experiments differ.
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**Verification versus establishment.** For an FDA-cleared or CE-marked assay used as intended, a
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laboratory *verifies* the manufacturer's performance claims — a bounded study. For a
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laboratory-developed test, or an assay used off-label, the laboratory *establishes* performance,
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which is a much larger exercise. Under CLIA the distinction has direct regulatory consequences and
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also depends on test complexity. Determine which applies before designing anything.
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## ISO standards
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| Standard | Relevance |
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| --- | --- |
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| ISO/IEC 17025:2017 | Clause 7.2 selection, verification and validation of methods; clause 7.6 measurement uncertainty. Validation "to the extent necessary" for the intended application — no characteristic list, no numeric criteria. |
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| ISO 15189 | Medical laboratories: quality and competence. The clinical-laboratory counterpart to 17025. |
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| ISO 21748 / ISO 5725 series | Using repeatability, reproducibility and trueness estimates in measurement uncertainty; accuracy of measurement methods. |
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Obtain from ISO (<https://www.iso.org/>) or a national member body. A laboratory is **accredited** to
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ISO/IEC 17025 by an accreditation body — it is not "17025 certified", and writing "certified" is a
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substantive error assessors notice.
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For accreditation readiness, the quality manual, and the surrounding management system, use this
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repository's `iso-standards-readiness` skill. This skill stays at the level of the individual
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procedure.
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## Environmental, food, and forensic method systems
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Where a prescribed method system governs — a published EPA method, an AOAC Official Method, a
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standard method for water or food analysis — the validation and quality-control requirements are
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written into the method or the programme, and they take precedence. Do not substitute a
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pharmaceutical framework. Common differences: matrix spike and duplicate requirements per batch,
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prescribed calibration-verification frequencies, method detection limit procedures that differ from
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both ICH and CLSI, and mandatory participation in proficiency testing schemes.
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# Which Framework Governs
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Research basis: **2026-07-27**. Confirm every date and edition against the official source before
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relying on it; see `source-ledger.md`.
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Framework selection is the first decision and the one most often skipped. Getting it wrong
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invalidates the protocol regardless of how well the studies are executed, because each framework
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requires a different set of characteristics, a different study layout, and a different treatment of
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acceptance criteria.
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## The deciding questions, in order
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**1. Is the measurand a drug concentration in a biological matrix, supporting a nonclinical or
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clinical study?**
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→ **ICH M10.** This covers pharmacokinetics, toxicokinetics, and bioequivalence. M10 supplies
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explicit numeric criteria, and they differ between chromatographic assays and ligand binding
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assays. Q2(R2) does not govern here.
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**2. Is it a quality attribute of a drug substance or drug product — assay, potency, impurity,
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identity, dissolution, content uniformity?**
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→ **ICH Q2(R2)** for validation, with **ICH Q14** for development, robustness, the analytical
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target profile, and lifecycle change management. If the procedure is compendial and being used as
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written, see question 3 first.
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**3. Is the procedure a compendial (pharmacopoeial) procedure?**
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→ **USP <1226> verification** if it is used as written and within its stated scope. Verification
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assesses selected characteristics to show the procedure works under actual conditions of use; it is
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not revalidation and does not repeat the full study. → **USP <1225> validation** if the procedure
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is non-compendial, or compendial but used outside its scope. Both sit inside the **USP <1220>**
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three-stage lifecycle. Regional pharmacopoeias (Ph. Eur., JP) have their own general chapters —
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check which pharmacopoeia the specification cites.
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**4. Is it a clinical laboratory measurement procedure reporting patient results?**
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→ **CLSI EP series**, inside a CLIA/CAP or ISO 15189 quality system. The vocabulary differs from
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pharmaceutical work: *verification* of a manufacturer's claims for an FDA-cleared assay is a much
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smaller exercise than *establishment* of performance for a laboratory-developed test, and the
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distinction is regulatory, not stylistic.
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**5. Is the laboratory accredited to ISO/IEC 17025 and the method non-standard, laboratory-developed,
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or a modified standard method?**
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→ **ISO/IEC 17025 clause 7.2.2** requires validation as extensive as necessary to meet the needs of
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the intended application, plus measurement uncertainty under clause 7.6. It sets no characteristic
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list and no numeric criteria; the laboratory justifies both.
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**6. Is it an environmental, food, or forensic method under a prescribed method system?**
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→ The method system governs (for example a published EPA method, an AOAC Official Method, or a
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regulator's prescribed procedure), usually with its own validation and QC requirements written into
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the method itself. Do not substitute a pharmaceutical framework.
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## More than one can apply
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Common and legitimate. A contract laboratory accredited to ISO/IEC 17025 running a compendial assay
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for a pharmaceutical client satisfies <1226> for the procedure and 17025 clause 7.2 for the
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accreditation scope, with the client's specification supplying the criteria. Record which framework
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each requirement traces to, so a later change can be assessed against the right one.
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## Do not blend them
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The failure mode is a protocol that mixes Q2(R1)-era characteristic names, an M10 numeric tolerance
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imported because it was memorable, and a CLSI study layout. It satisfies none of the three and is
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hard to defend because no single source can be cited for any of it. If a requirement is in the
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protocol, name the framework and section it comes from.
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## Where the numbers come from
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| Framework | Numeric acceptance criteria |
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| --- | --- |
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| ICH Q2(R2) | Almost none. Derive from the specification, the ATP, or development data, and justify. |
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| ICH Q14 | None. It supplies the ATP concept and the development/robustness framework. |
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| ICH M10 | Explicit, and modality-dependent. Use them as written. |
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| USP <1225>/<1226>/<1220> | Consult the authorised text. |
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| CLSI EP | Consult the authorised text; many EP documents supply study designs rather than limits. |
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| ISO/IEC 17025 | None. The laboratory sets and justifies them. |
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Q2(R2)'s reticence is deliberate: a criterion that is not tied to what the result is used for is
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arbitrary. An assay releasing product against a 95.0–105.0% specification needs different precision
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than one supporting a 70–130% content-uniformity limit. Deriving the criterion from the decision the
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result supports is the substance of the exercise, not paperwork around it.
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## Related skills in this repository
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- `iso-standards-readiness` — the surrounding quality system (ISO/IEC 17025, ISO 15189
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accreditation readiness, quality manual, CAPA). That skill operates at the laboratory level; this
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one operates at the level of a single procedure.
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- `statistical-analysis`, `statistical-power` — general inference and study sizing.
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- `uncertainty-and-units` — unit handling and measurement uncertainty propagation, which ISO/IEC
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17025 clause 7.6 requires alongside validation.
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# ICH M10 — Bioanalytical Criteria, by Modality
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Research basis: **2026-07-27**, read from the ICH Harmonised Guideline *Bioanalytical Method
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Validation and Study Sample Analysis M10*, Step 4 dated 24 May 2022. ICH licenses its documents for
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reuse with acknowledgement. Confirm the current text and your region's implementation at
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<https://database.ich.org/sites/default/files/M10_Guideline_Step4_2022_0524.pdf>.
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M10 harmonised what had been separate FDA and EMA bioanalytical guidance for studies in its scope:
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methods quantifying drug and metabolite concentrations in biological matrices supporting nonclinical
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and clinical studies, plus the analysis of study samples.
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## The distinction that matters most
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**Chromatographic assays (section 3) and ligand binding assays (section 4) have different numeric
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criteria throughout.** They are not stylistic variants of one set. Applying chromatographic
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tolerances to an LBA is the most common error in this area, and importing the LBA total-error
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criterion into a chromatographic method is its mirror image.
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| | Chromatographic | Ligand binding assay |
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| --- | --- | --- |
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| Calibration levels (minimum) | 6, including LLOQ | 6, including LLOQ |
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| Calibration standard tolerance | ±15% | ±20% |
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| … at LLOQ | ±20% | ±25% |
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| … at ULOQ | ±15% | ±25% |
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| Calibration standards that must pass | ≥75% | ≥75%, excluding anchor points |
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| Accuracy | ±15% | ±20% |
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| … at limits | ±20% at LLOQ | ±25% at LLOQ **and** ULOQ |
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| Precision (%CV) | ≤15% | ≤20% |
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| … at limits | ≤20% at LLOQ | ≤25% at LLOQ **and** ULOQ |
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| A&P QC levels | minimum 4 | 5 (LLOQ, low, medium, high, ULOQ) |
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| A&P replicates per level per run | ≥5 (within-run) | ≥3 |
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| A&P runs | ≥3 runs over ≥2 days | ≥6 runs over ≥2 days |
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| **Total error** | **no such criterion** | **≤30%; ≤40% at LLOQ and ULOQ** |
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| Routine run QC tolerance | ±15% | ±20% |
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| Routine run QC pass rule | ≥2/3 of all QCs **and** ≥50% at each level | same rule, ±20% |
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| Dilution integrity | mean within ±15% | mean within ±20% |
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| Stability | mean at each QC level within ±15% | mean within ±20% |
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| ISR agreement | within ±20% for ≥2/3 of repeats | within ±30% for ≥2/3 of repeats |
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| Selectivity sources/lots | ≥6 individual sources | ≥6 individual sources |
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| Carry-over in blank | ≤20% of LLOQ analyte response and ≤5% of IS response | per guideline |
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Verify any figure against the guideline before using it in a protocol; regional implementation and
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subsequent revisions can change the picture.
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## Chromatographic QC placement (section 3)
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Accuracy and precision validation QCs at a minimum of **four** concentration levels:
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- the **LLOQ**
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- **low QC** — within three times the LLOQ
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- **medium QC** — around 30–50% of the calibration curve range
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- **high QC** — at least 75% of the ULOQ
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For runs that are not accuracy-and-precision runs, low, medium and high QCs may be analysed in
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duplicate; these plus the calibration standards form the basis for accepting or rejecting the run.
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Calibration standards and QCs should be prepared from **separate stock solutions**, to avoid a bias
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that is not a property of the analytical performance. If a single stock must serve both, verify the
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accuracy and stability of that stock. A single source of blank matrix may be used if it is free of
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least one run; if other runs use frozen standards, demonstrate their stability.
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## Reporting obligations that catch people out
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**Report everything.** Validation data and the determination of accuracy and precision must include
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*all* results obtained, including individual QCs outside the acceptance criteria — except cases where
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errors are obvious and documented. Silently dropping an out-of-criteria QC is a data integrity
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problem, not a rounding decision.
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**Within-run accuracy and precision are reported per run.** If the within-run criteria are not met in
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every run, calculate an overall estimate of within-run accuracy and precision for each QC level.
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Between-run (intermediate) accuracy and precision combine data from all runs.
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**Trend within a run.** It is recommended to demonstrate accuracy and precision over at least one run
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sized like a prospective study-sample run, so time-dependent drift is visible.
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## Incurred sample reanalysis (section 5)
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ISR repeats the analysis of a subset of study samples in separate runs, to verify that measured
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concentrations in real samples are reproducible. It is not a substitute for QCs — QCs are spiked,
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incurred samples are not, and only incurred samples can reveal metabolite back-conversion, protein
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binding effects, or matrix instability.
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- Objective criteria for choosing the subset should be **predefined**; selecting samples around
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Cmax and the elimination phase is recommended.
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- **Do not pool samples** — pooling masks anomalous findings.
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- ISR samples and QCs are processed and analysed in the same manner as the original analysis.
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against the **mean of the two**, not against the initial value.
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- Repeats are performed within the analyte's stability window, but **not on the same day**
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as the original analysis.
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- Acceptance: within ±20% for at least 2/3 of repeats (chromatographic), or within ±30% for at least
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2/3 (LBA).
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For nonclinical studies in scope, ISR should in general be performed; the guideline notes incurred
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samples need only be included if available, so inclusion was not felt to be mandatory in every case.
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Confirm the situations requiring ISR against the guideline text for your study type.
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## Study sample reanalysis is a separate thing
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ISR is a method-reliability check. *Reanalysis of study samples* for a reportable-value decision is
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different, and the reasons for reanalysis, the number of replicates, and the criteria for selecting
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the value to report must be **predefined in the protocol, study plan, or SOP before study sample
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analysis begins.** Deciding after the fact which of two values to report is the classic finding.
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## Partial and cross validation
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M10 addresses partial validation (a change to a validated method — matrix, anticoagulant, species,
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instrument, or a range change) and cross validation (comparing data from two methods or two
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laboratories contributing to the same study). Both are scoped by the change and the risk; consult
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the guideline for what each requires. For a cross validation between sites or methods, the
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statistics in `compare_methods.py` — equivalence testing against a pre-stated margin, and a
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regression that allows error in both measurements — are the appropriate treatment.
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## Biomarkers and other contexts
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M10's scope centres on drug and metabolite concentration measurement. Biomarker assays, immunogenicity
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assays, and diagnostic measurements are addressed differently or fall outside scope; do not assume the
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concentration-assay criteria transfer. Where a biomarker assay supports a regulatory decision, the
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fit-for-purpose framework and the applicable regional guidance govern the extent of validation.
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@@ -1,229 +0,0 @@
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# ICH Q2(R2) — Structure and Recommended Data
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Research basis: **2026-07-27**, read from the ICH Harmonised Guideline *Validation of Analytical
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Procedures Q2(R2)*, Final Version adopted 1 November 2023, with the error correction dated
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30 November 2023. ICH licenses its documents for reuse with acknowledgement, so requirements are
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summarised here directly. Confirm the current text and your region's implementation date at
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<https://database.ich.org/sites/default/files/ICH_Q2%28R2%29_Guideline_2023_1130.pdf>.
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## Document history that matters
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| Version | Date | Note |
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| --- | --- | --- |
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| Q2A | Oct 1994 | Text |
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| Q2B | Nov 1996 | Methodology |
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| Q2(R1) | Nov 2005 | Q2B merged into the parent guideline |
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| Q2(R2) | 1 Nov 2023 | Complete revision, aligned with the new Q14 |
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| Q2(R2) correction | 30 Nov 2023 | Table 5 reportable-range linearity formulae; Tables 6–11 |
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If a protocol cites "ICH Q2(R1)" or lists characteristics in the R1 order, it is working from the
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superseded structure. The error correction is easy to miss and applies to the dissolution example
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and to Annex 2 Tables 6–11.
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## The restructure
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Q2(R1) presented a flat list. Q2(R2) groups methodology under section 3 by performance
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characteristic:
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```
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3.1 Specificity/Selectivity
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3.1.1 General considerations (absence of interference, orthogonal comparison,
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technology-inherent justification)
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3.2 Range <-- parent characteristic
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3.2.2 Response
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3.2.2.1 Linear response <-- what R1 called "linearity"
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3.2.2.2 Non-linear response
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3.2.2.3 Multivariate calibration
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3.2.3 Validation of lower range limits <-- what R1 called LOD and LOQ
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3.3 Accuracy and Precision
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3.3.1 Accuracy
|
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3.3.2 Precision (repeatability, intermediate precision, reproducibility)
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3.3.3 Combined approaches for accuracy and precision <-- new
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3.4 Robustness --> largely a development activity, see ICH Q14
|
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|
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```
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Section 2 carries the general considerations, including two concepts absent from R1: **reportable
|
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range** (2.3) and **considerations for multivariate analytical procedures** (2.5).
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## Table 1 — which tests for which measured attribute
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|
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Required tests follow the *measured quality attribute*, not the instrument.
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| Characteristic | Identity | Impurity: quantitative | Impurity: limit test | Assay (content/potency) |
|
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| --- | --- | --- | --- | --- |
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| Specificity test | yes | yes | yes | yes |
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| Response (calibration model) | no | yes | no | yes |
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| Lower range limit | no | QL† | DL | no |
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| Accuracy test | no | yes | no | yes |
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| Repeatability test | no | yes | no | yes |
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| Intermediate precision test | no | yes‡ | no | yes‡ |
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† In some complex cases DL may also be evaluated.
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‡ Not required independently where reproducibility has been performed and intermediate precision
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can be derived from that dataset.
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|
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Further notes from Table 1: other quantitative measurements follow the impurity scheme when the
|
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range limit is close to DL/QL, and the assay scheme when it is not. Some characteristics may be
|
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substituted by technology-inherent justification for physicochemical properties. Lack of specificity
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|
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in one procedure should be compensated by one or more supporting procedures unless justified.
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## Table 2 — reportable range examples
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The reportable range derives from the specification and must include the upper and lower
|
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specification or reporting limits. Other ranges are acceptable if justified; at low amounts a wider
|
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upper range may be more practical.
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| Use | Low end | High end |
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|
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| --- | --- | --- |
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| Assay of a product | 80% of declared content, or 80% of the lower specification limit | 120% of declared content, or 120% of the upper specification limit |
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| Potency | lowest specification limit −20% | highest specification limit +20% |
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80
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| Content uniformity | 70% of declared content | 130% of declared content |
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| Dissolution, IR, one point | Q − 45% of the lowest strength specification | per specification |
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| Dissolution, IR, multi-point | lower limit as justified, or QL | 130% of declared content of the highest strength |
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| Dissolution, modified release | lower limit as justified, or QL | per specification |
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| Impurity | reporting threshold | 120% of the specification limit |
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| Purity (area %) | 80% of the lower specification limit | upper specification limit, or 100% |
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Where assay and impurity run as a single test with one standard, linearity must be shown both at the
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impurity reporting level and up to 120% of the assay specification limit.
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**Reportable range vs working range.** The reportable range is the interval of *reported results*.
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A working range is what is presented to the instrument, and may differ because of dilution or other
|
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sample preparation. They can be identical. Mathematical calculation normally links the two.
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## Recommended data, by characteristic
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**Specificity (3.1).** Demonstrate absence of relevant interference, or compare against an
|
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orthogonal procedure, or justify from the technology. For a stability-indicating claim (2.4),
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include samples containing relevant degradation products: spiked with target analytes and known
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interferences, stressed physically and chemically, and aged or stress-stored product samples.
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**Response — linear (3.2.2.1).** Evaluate across the range. **A minimum of five concentrations,
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appropriately distributed, is recommended.** Report the plot, the correlation coefficient or
|
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coefficient of determination, the y-intercept, the slope, and *an analysis of the deviation of the
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actual data points from the regression line* — for a linear response, assess the impact of any
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non-random pattern in the residual plot. Data may be transformed (for example logarithmically) if
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necessary. Other approaches require justification.
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**Response — non-linear (3.2.2.2).** Some procedures are legitimately non-linear; immunoassays and
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cell-based assays commonly give an S-shaped curve, typically modelled with four- or five-parameter
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logistic functions. For these, **linearity of the concentration–response relationship is not
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required.** Assess the model by non-linear regression, and evaluate whether results are proportional
|
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to the true values across the range.
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**Response — multivariate (3.2.2.3).** Algorithms may be linear or non-linear. Accuracy depends on
|
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the distribution of calibration samples across the range and on the reference procedure's error.
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Assess how the residuals change across the calibration range, graphically.
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**Lower range limits (3.2.3).** Four approaches:
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| Approach | DL | QL |
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| --- | --- | --- |
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| Visual evaluation (3.2.3.1) | lowest reliably detected | lowest reliably quantitated |
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| Signal-to-noise (3.2.3.2) | S/N 3:1 generally acceptable | S/N at least 10:1 |
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| SD of response and slope (3.2.3.3) | 3.3σ / S | 10σ / S |
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| Accuracy and precision at the limit (3.2.3.4) | — | validated directly, not estimated |
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σ may come from the SD of blank responses, the residual SD of the regression line, or the SD of
|
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y-intercepts of regression lines. S is the calibration slope. Signal-to-noise applies only where
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there is baseline noise, and the noise region should sit around where the peak would appear.
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Reporting (3.2.3.5): give the limit **and the approach used**. An estimated limit should then be
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validated by analysing a suitable number of samples at or near it. **For impurity tests the QL must
|
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be at or below the reporting threshold.** Where the QL is well below the reporting limit — roughly
|
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ten times lower — the confirmatory validation may be omitted with justification.
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**Accuracy (3.3.1).** Establish across the reportable range under regular test conditions, including
|
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the sample matrix and the described preparation steps. Three routes: comparison against a reference
|
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material of known purity, a spiking study into matrix, or comparison against an orthogonal
|
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procedure. Accuracy can be inferred once precision, response within the range, and specificity are
|
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established.
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|
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|
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Recommended data (3.3.1.4): an appropriate number of determinations and levels across the reportable
|
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|
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range — **for example 3 concentrations × 3 replicates of the full procedure.** Report as mean percent
|
|
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|
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recovery of a known added amount, or as the difference between the mean and the accepted true value,
|
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**together with an appropriate 100(1−α)% confidence interval** or justified alternative interval. The
|
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146
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observed interval should be compatible with the accuracy criterion. For impurities, state whether
|
|
147
|
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the determination is weight/weight or area percent. For quantitative multivariate procedures use
|
|
148
|
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RMSEP, compared against an acceptable RMSEC.
|
|
149
|
-
|
|
150
|
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**Precision (3.3.2).** Use authentic homogeneous samples, or artificially prepared ones if
|
|
151
|
-
unavailable.
|
|
152
|
-
|
|
153
|
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- *Repeatability (3.3.2.1)*: **a minimum of 9 determinations covering the reportable range** (for
|
|
154
|
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example 3 concentrations × 3 replicates), **or a minimum of 6 determinations at 100% of the test
|
|
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|
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concentration.**
|
|
156
|
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- *Intermediate precision (3.3.2.2)*: establish the effects of random events — typically different
|
|
157
|
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days, environmental conditions, analysts, and equipment. **Studying these effects individually is
|
|
158
|
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not necessary**, and design of experiments is encouraged. The extent should be justified from
|
|
159
|
-
development understanding and risk assessment (ICH Q14).
|
|
160
|
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- *Reproducibility (3.3.2.3)*: an inter-laboratory trial. **Usually not required for a regulatory
|
|
161
|
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submission**, but consider it for pharmacopoeial standardisation or multi-site procedures.
|
|
162
|
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|
|
163
|
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Recommended data (3.3.2.4): report the standard deviation, the relative standard deviation, and an
|
|
164
|
-
appropriate 100(1−α)% confidence interval.
|
|
165
|
-
|
|
166
|
-
**Combined accuracy and precision (3.3.3).** Instead of separate criteria, assess total impact
|
|
167
|
-
against a single combined criterion, using a prediction interval, a tolerance interval, or a
|
|
168
|
-
confidence interval. Report the combined value, describe the approach, and supply the individual
|
|
169
|
-
results as supplemental information where they help justify suitability.
|
|
170
|
-
|
|
171
|
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**Robustness (3.4).** Deliberate variation of procedure parameters, plus stability of sample
|
|
172
|
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preparations and reagents over the duration of the procedure. Considered during development; may be
|
|
173
|
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submitted as development data case-by-case or made available on request. See ICH Q14 section 5.
|
|
174
|
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|
|
175
|
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## Lifecycle, transfer, and prior knowledge
|
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176
|
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|
|
177
|
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Section 2.1 permits suitable development data (ICH Q14) to form part of the validation data, and
|
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178
|
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allows abbreviated validation testing for an established platform procedure used for a new purpose,
|
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179
|
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with scientific justification. A validation protocol must exist before the study, stating the
|
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180
|
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intended purpose, the characteristics to be validated, and the associated criteria; where prior
|
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181
|
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knowledge is used, justify it. Results are summarised in a validation report.
|
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|
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|
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183
|
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The experimental design should reflect the number of replicates used in routine analysis to generate
|
|
184
|
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a reportable result, unless a different number is justified.
|
|
185
|
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|
|
186
|
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Section 2.2 covers change: partial or full revalidation may be needed, decided on science and risk,
|
|
187
|
-
and scoped to the characteristics the change affects. **Transfer** to another laboratory calls for
|
|
188
|
-
partial or full revalidation and/or comparative analysis of representative samples; not performing
|
|
189
|
-
transfer experiments requires justification. **Co-validation** across multiple sites can demonstrate
|
|
190
|
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the criteria are met and can simultaneously satisfy transfer at the participating sites.
|
|
191
|
-
|
|
192
|
-
## Annex 2 — illustrative technique examples
|
|
193
|
-
|
|
194
|
-
Non-mandatory worked examples, useful as a starting point for the robustness parameter list:
|
|
195
|
-
|
|
196
|
-
| Table | Technique |
|
|
197
|
-
| --- | --- |
|
|
198
|
-
| 3 | Quantitative separation techniques (HPLC, GC, CE) for impurities or assay, and relative-area quantitation |
|
|
199
|
-
| 4 | Elemental impurities by ICP-OES or ICP-MS |
|
|
200
|
-
| 5 | Dissolution with HPLC as product performance test (corrected 30 Nov 2023) |
|
|
201
|
-
| 6 | Quantitative ¹H-NMR for assay of a drug substance |
|
|
202
|
-
| 7 | Biological assays |
|
|
203
|
-
| 8 | Quantitative PCR |
|
|
204
|
-
| 9 | Particle size measurement |
|
|
205
|
-
| 10 | NIR analytical procedure |
|
|
206
|
-
| 11 | Quantitative LC/MS |
|
|
207
|
-
|
|
208
|
-
From Table 3, a detail worth carrying forward: **relative response factors.** Where the analyte
|
|
209
|
-
responds differently from the reference material, calculate the RRF from the appropriate ratio of
|
|
210
|
-
responses under final procedure conditions and document it. **If the RRF falls outside 0.8–1.2,
|
|
211
|
-
apply a correction factor.** Where an impurity is overestimated, omitting the correction may be
|
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212
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acceptable.
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213
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-
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214
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## Multivariate procedures (2.5)
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215
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-
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216
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Results come from a model relating many input variables to the property of interest. Validate in two
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217
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phases:
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218
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-
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219
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1. **Model development** — calibration plus internal testing. Test data may be a separate set or
|
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220
|
-
part of the calibration set used rotationally, and are used to estimate performance and tune
|
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221
|
-
parameters such as the number of PLS latent variables. See ICH Q14.
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222
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2. **Model validation** — an independent validation set. For identification libraries, analyse
|
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223
|
-
challenge samples *not* represented in the library to demonstrate discriminative ability.
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224
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-
|
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225
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-
Samples need reference values or categories, normally from a validated or pharmacopoeial reference
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226
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procedure whose performance **equals or exceeds** the expected performance of the multivariate
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227
|
-
procedure. Reference measurement and multivariate data collection should be on the same samples
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228
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within a period short enough to assure sample and measurement stability. Describe any correlation or
|
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229
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unit conversion, and any assumptions.
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