@pikaa-ai/pikaa 0.3.1 → 0.3.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1870) hide show
  1. package/dist/cli.js +1169 -601
  2. package/dist/index.js +525 -204
  3. package/package.json +5 -3
  4. package/skills/adaptyv/references/api-endpoints.md +0 -690
  5. package/skills/aeon/references/anomaly_detection.md +0 -154
  6. package/skills/aeon/references/classification.md +0 -144
  7. package/skills/aeon/references/clustering.md +0 -123
  8. package/skills/aeon/references/datasets_benchmarking.md +0 -392
  9. package/skills/aeon/references/distances.md +0 -256
  10. package/skills/aeon/references/forecasting.md +0 -109
  11. package/skills/aeon/references/networks.md +0 -289
  12. package/skills/aeon/references/regression.md +0 -118
  13. package/skills/aeon/references/segmentation.md +0 -163
  14. package/skills/aeon/references/similarity_search.md +0 -187
  15. package/skills/aeon/references/transformations.md +0 -246
  16. package/skills/analytical-method-validation/assets/validation-protocol-template.md +0 -106
  17. package/skills/analytical-method-validation/assets/validation-report-template.md +0 -116
  18. package/skills/analytical-method-validation/references/compendial-and-clsi.md +0 -96
  19. package/skills/analytical-method-validation/references/framework-selection.md +0 -87
  20. package/skills/analytical-method-validation/references/ich-m10-bioanalytical.md +0 -123
  21. package/skills/analytical-method-validation/references/ich-q2r2.md +0 -229
  22. package/skills/analytical-method-validation/references/source-ledger.md +0 -125
  23. package/skills/analytical-method-validation/references/statistics.md +0 -209
  24. package/skills/analytical-method-validation/scripts/_catalog.py +0 -499
  25. package/skills/analytical-method-validation/scripts/_common.py +0 -955
  26. package/skills/analytical-method-validation/scripts/check_accuracy_precision.py +0 -328
  27. package/skills/analytical-method-validation/scripts/check_bioanalytical_run.py +0 -293
  28. package/skills/analytical-method-validation/scripts/check_detection_limits.py +0 -310
  29. package/skills/analytical-method-validation/scripts/check_response.py +0 -243
  30. package/skills/analytical-method-validation/scripts/compare_methods.py +0 -215
  31. package/skills/analytical-method-validation/scripts/plan_validation.py +0 -381
  32. package/skills/anndata/references/best_practices.md +0 -532
  33. package/skills/anndata/references/concatenation.md +0 -399
  34. package/skills/anndata/references/data_structure.md +0 -314
  35. package/skills/anndata/references/io_operations.md +0 -466
  36. package/skills/anndata/references/manipulation.md +0 -516
  37. package/skills/arbor/references/arbor-upstream.md +0 -91
  38. package/skills/arbor/references/executor-brief.md +0 -68
  39. package/skills/arbor/references/htr-methodology.md +0 -177
  40. package/skills/arbor/references/report-template.md +0 -39
  41. package/skills/arbor/scripts/tree.py +0 -564
  42. package/skills/arboreto/references/algorithms.md +0 -152
  43. package/skills/arboreto/references/basic_inference.md +0 -181
  44. package/skills/arboreto/references/distributed_computing.md +0 -242
  45. package/skills/arboreto/scripts/basic_grn_inference.py +0 -107
  46. package/skills/astropy/references/coordinates.md +0 -280
  47. package/skills/astropy/references/cosmology.md +0 -309
  48. package/skills/astropy/references/fits.md +0 -398
  49. package/skills/astropy/references/tables.md +0 -495
  50. package/skills/astropy/references/time.md +0 -412
  51. package/skills/astropy/references/units.md +0 -178
  52. package/skills/astropy/references/wcs_and_other_modules.md +0 -377
  53. package/skills/autoskill/config.yaml +0 -53
  54. package/skills/autoskill/references/https-proxy.md +0 -62
  55. package/skills/autoskill/references/screenpipe-config.yaml +0 -61
  56. package/skills/autoskill/scripts/autoskill.py +0 -35
  57. package/skills/autoskill/scripts/backends.py +0 -116
  58. package/skills/autoskill/scripts/cluster.py +0 -54
  59. package/skills/autoskill/scripts/doctor.py +0 -108
  60. package/skills/autoskill/scripts/fetch_window.py +0 -33
  61. package/skills/autoskill/scripts/match_skills.py +0 -46
  62. package/skills/autoskill/scripts/promote.py +0 -58
  63. package/skills/autoskill/scripts/redact.py +0 -40
  64. package/skills/autoskill/scripts/run.py +0 -194
  65. package/skills/autoskill/scripts/synthesize.py +0 -72
  66. package/skills/benchling-integration/references/api_endpoints.md +0 -883
  67. package/skills/benchling-integration/references/authentication.md +0 -390
  68. package/skills/benchling-integration/references/core_capabilities.md +0 -355
  69. package/skills/benchling-integration/references/eventbridge.md +0 -255
  70. package/skills/benchling-integration/references/sdk_reference.md +0 -772
  71. package/skills/bids/references/beps.yml +0 -637
  72. package/skills/bids/references/bids_schema.json +0 -21015
  73. package/skills/bids/references/bids_specification.md +0 -165
  74. package/skills/bids/references/conversion_tools.md +0 -475
  75. package/skills/bids/references/core_workflows.md +0 -552
  76. package/skills/bids/references/metadata_fields.md +0 -365
  77. package/skills/bids/scripts/update_schema.py +0 -89
  78. package/skills/biopython/references/advanced.md +0 -580
  79. package/skills/biopython/references/alignment.md +0 -377
  80. package/skills/biopython/references/blast.md +0 -463
  81. package/skills/biopython/references/databases.md +0 -492
  82. package/skills/biopython/references/phylogenetics.md +0 -566
  83. package/skills/biopython/references/sequence_io.md +0 -289
  84. package/skills/biopython/references/structure.md +0 -564
  85. package/skills/bioservices/references/identifier_mapping.md +0 -685
  86. package/skills/bioservices/references/services_reference.md +0 -638
  87. package/skills/bioservices/references/workflow_patterns.md +0 -813
  88. package/skills/bioservices/scripts/batch_id_converter.py +0 -347
  89. package/skills/bioservices/scripts/compound_cross_reference.py +0 -387
  90. package/skills/bioservices/scripts/pathway_analysis.py +0 -309
  91. package/skills/bioservices/scripts/protein_analysis_workflow.py +0 -441
  92. package/skills/bulk-rnaseq/references/counts-and-handoff.md +0 -91
  93. package/skills/bulk-rnaseq/references/design-and-qc.md +0 -68
  94. package/skills/bulk-rnaseq/references/upstream-manual.md +0 -128
  95. package/skills/bulk-rnaseq/references/upstream-nfcore.md +0 -108
  96. package/skills/bulk-rnaseq/scripts/build_counts_matrix.py +0 -203
  97. package/skills/bulk-rnaseq/scripts/validate_samplesheet.py +0 -206
  98. package/skills/cellxgene-census/references/census_schema.md +0 -218
  99. package/skills/cellxgene-census/references/common_patterns.md +0 -368
  100. package/skills/cellxgene-census/references/core_workflow_patterns.md +0 -297
  101. package/skills/cirq/references/building.md +0 -307
  102. package/skills/cirq/references/experiments.md +0 -572
  103. package/skills/cirq/references/hardware.md +0 -527
  104. package/skills/cirq/references/noise.md +0 -514
  105. package/skills/cirq/references/simulation.md +0 -353
  106. package/skills/cirq/references/transformation.md +0 -416
  107. package/skills/citation-management/assets/bibtex_template.bib +0 -264
  108. package/skills/citation-management/assets/citation_checklist.md +0 -386
  109. package/skills/citation-management/references/best_practices.md +0 -91
  110. package/skills/citation-management/references/bibtex_formatting.md +0 -908
  111. package/skills/citation-management/references/citation_validation.md +0 -835
  112. package/skills/citation-management/references/core_workflow.md +0 -569
  113. package/skills/citation-management/references/example_workflows.md +0 -126
  114. package/skills/citation-management/references/google_scholar_search.md +0 -732
  115. package/skills/citation-management/references/metadata_extraction.md +0 -870
  116. package/skills/citation-management/references/pubmed_search.md +0 -839
  117. package/skills/citation-management/references/script_reference.md +0 -250
  118. package/skills/citation-management/references/search_strategies.md +0 -110
  119. package/skills/citation-management/scripts/_common.py +0 -331
  120. package/skills/citation-management/scripts/doi_to_bibtex.py +0 -204
  121. package/skills/citation-management/scripts/extract_metadata.py +0 -690
  122. package/skills/citation-management/scripts/format_bibtex.py +0 -356
  123. package/skills/citation-management/scripts/search_google_scholar.py +0 -268
  124. package/skills/citation-management/scripts/search_openalex.py +0 -297
  125. package/skills/citation-management/scripts/search_pubmed.py +0 -419
  126. package/skills/citation-management/scripts/validate_citations.py +0 -688
  127. package/skills/clinical-decision-support/assets/aggregate_cohort_table_template.json +0 -114
  128. package/skills/clinical-decision-support/assets/aggregate_model_evaluation_template.json +0 -115
  129. package/skills/clinical-decision-support/assets/artifact_intended_use_template.json +0 -81
  130. package/skills/clinical-decision-support/assets/decision_logic_traceability_template.json +0 -108
  131. package/skills/clinical-decision-support/assets/deidentification_checklist_template.json +0 -176
  132. package/skills/clinical-decision-support/assets/evidence_profile_template.json +0 -139
  133. package/skills/clinical-decision-support/assets/survival_analysis_plan_template.json +0 -134
  134. package/skills/clinical-decision-support/references/cohort_evaluation.md +0 -142
  135. package/skills/clinical-decision-support/references/decision_logic_traceability.md +0 -146
  136. package/skills/clinical-decision-support/references/evidence_profiles.md +0 -153
  137. package/skills/clinical-decision-support/references/model_biomarker_evaluation.md +0 -152
  138. package/skills/clinical-decision-support/references/privacy_and_disclosure.md +0 -144
  139. package/skills/clinical-decision-support/references/regulatory_and_governance.md +0 -104
  140. package/skills/clinical-decision-support/references/safety_and_scope.md +0 -103
  141. package/skills/clinical-decision-support/references/security_validation.md +0 -60
  142. package/skills/clinical-decision-support/references/sources.md +0 -119
  143. package/skills/clinical-decision-support/references/study_reporting.md +0 -134
  144. package/skills/clinical-decision-support/references/survival_analysis.md +0 -156
  145. package/skills/clinical-decision-support/scripts/_common.py +0 -223
  146. package/skills/clinical-decision-support/scripts/cohort_table_generator.py +0 -288
  147. package/skills/clinical-decision-support/scripts/decision_logic_traceability.py +0 -313
  148. package/skills/clinical-decision-support/scripts/deidentification_checklist.py +0 -260
  149. package/skills/clinical-decision-support/scripts/evidence_profile_check.py +0 -259
  150. package/skills/clinical-decision-support/scripts/model_biomarker_evaluation.py +0 -345
  151. package/skills/clinical-decision-support/scripts/survival_plan_validator.py +0 -294
  152. package/skills/clinical-decision-support/scripts/validate_cds_artifact.py +0 -269
  153. package/skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv +0 -1
  154. package/skills/clinical-reports/assets/case_report_template.json +0 -43
  155. package/skills/clinical-reports/assets/clinical_trial_csr_template.json +0 -51
  156. package/skills/clinical-reports/assets/clinical_trial_results_template.json +0 -66
  157. package/skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json +0 -49
  158. package/skills/clinical-reports/assets/consistency_manifest_template.json +0 -15
  159. package/skills/clinical-reports/assets/deidentification_process_checklist.json +0 -56
  160. package/skills/clinical-reports/assets/lab_report_template.json +0 -36
  161. package/skills/clinical-reports/assets/pathology_report_template.json +0 -36
  162. package/skills/clinical-reports/assets/provenance_manifest_template.json +0 -17
  163. package/skills/clinical-reports/assets/quality_review_checklist.json +0 -34
  164. package/skills/clinical-reports/assets/radiology_report_template.json +0 -34
  165. package/skills/clinical-reports/assets/research_summary_template.json +0 -36
  166. package/skills/clinical-reports/assets/terminology_manifest_template.json +0 -11
  167. package/skills/clinical-reports/assets/trial_protocol_reporting_checklist.json +0 -70
  168. package/skills/clinical-reports/references/case_report_guidelines.md +0 -72
  169. package/skills/clinical-reports/references/clinical_trial_reporting.md +0 -97
  170. package/skills/clinical-reports/references/data_presentation.md +0 -92
  171. package/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -76
  172. package/skills/clinical-reports/references/medical_terminology.md +0 -84
  173. package/skills/clinical-reports/references/privacy_and_deidentification.md +0 -84
  174. package/skills/clinical-reports/references/professional_review.md +0 -78
  175. package/skills/clinical-reports/references/report_type_routing.md +0 -57
  176. package/skills/clinical-reports/references/safety_reporting.md +0 -109
  177. package/skills/clinical-reports/references/sources.md +0 -75
  178. package/skills/clinical-reports/scripts/_common.py +0 -263
  179. package/skills/clinical-reports/scripts/check_deidentification.py +0 -298
  180. package/skills/clinical-reports/scripts/consistency_checker.py +0 -390
  181. package/skills/clinical-reports/scripts/format_adverse_events.py +0 -455
  182. package/skills/clinical-reports/scripts/generate_report_template.py +0 -115
  183. package/skills/clinical-reports/scripts/provenance_validator.py +0 -263
  184. package/skills/clinical-reports/scripts/terminology_validator.py +0 -277
  185. package/skills/clinical-reports/scripts/validate_case_report.py +0 -278
  186. package/skills/clinical-reports/scripts/validate_trial_report.py +0 -534
  187. package/skills/cobrapy/references/api_quick_reference.md +0 -665
  188. package/skills/cobrapy/references/workflows.md +0 -600
  189. package/skills/consciousness-council/references/advanced-configurations.md +0 -96
  190. package/skills/dask/references/arrays.md +0 -495
  191. package/skills/dask/references/bags.md +0 -468
  192. package/skills/dask/references/best-practices.md +0 -277
  193. package/skills/dask/references/dataframes.md +0 -370
  194. package/skills/dask/references/futures.md +0 -541
  195. package/skills/dask/references/schedulers.md +0 -517
  196. package/skills/database-lookup/references/addgene.md +0 -38
  197. package/skills/database-lookup/references/alphafold.md +0 -52
  198. package/skills/database-lookup/references/alphavantage.md +0 -261
  199. package/skills/database-lookup/references/bea.md +0 -409
  200. package/skills/database-lookup/references/bindingdb.md +0 -85
  201. package/skills/database-lookup/references/biogrid.md +0 -110
  202. package/skills/database-lookup/references/bls.md +0 -235
  203. package/skills/database-lookup/references/brenda.md +0 -71
  204. package/skills/database-lookup/references/cbioportal.md +0 -206
  205. package/skills/database-lookup/references/census.md +0 -251
  206. package/skills/database-lookup/references/chebi.md +0 -103
  207. package/skills/database-lookup/references/chembl.md +0 -80
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  210. package/skills/database-lookup/references/clinvar.md +0 -91
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  212. package/skills/database-lookup/references/cosmic.md +0 -59
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  218. package/skills/database-lookup/references/drugbank.md +0 -54
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  229. package/skills/database-lookup/references/gene-ontology.md +0 -147
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  236. package/skills/database-lookup/references/human-protein-atlas.md +0 -57
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1
- # Seaborn Function Reference
2
-
3
- This document provides a comprehensive reference for all major seaborn functions, organized by category. It is updated for seaborn 0.13.2 patterns.
4
-
5
- ## Relational Plots
6
-
7
- ### scatterplot()
8
-
9
- **Purpose:** Create a scatter plot with points representing individual observations.
10
-
11
- **Key Parameters:**
12
- - `data` - DataFrame, array, or dict of arrays
13
- - `x, y` - Variables for x and y axes
14
- - `hue` - Grouping variable for color encoding
15
- - `size` - Grouping variable for size encoding
16
- - `style` - Grouping variable for marker style
17
- - `palette` - Color palette name or list
18
- - `hue_order` - Order for categorical hue levels
19
- - `hue_norm` - Normalization for numeric hue (tuple or Normalize object)
20
- - `sizes` - Size range for size encoding (tuple or dict)
21
- - `size_order` - Order for categorical size levels
22
- - `size_norm` - Normalization for numeric size
23
- - `markers` - Marker style(s) (string, list, or dict)
24
- - `style_order` - Order for categorical style levels
25
- - `legend` - How to draw legend: "auto", "brief", "full", or False
26
- - `ax` - Matplotlib axes to plot on
27
-
28
- **Example:**
29
- ```python
30
- sns.scatterplot(data=df, x='height', y='weight',
31
- hue='gender', size='age', style='smoker',
32
- palette='Set2', sizes=(20, 200))
33
- ```
34
-
35
- ### lineplot()
36
-
37
- **Purpose:** Draw a line plot with automatic aggregation and confidence intervals for repeated measures.
38
-
39
- **Key Parameters:**
40
- - `data` - DataFrame, array, or dict of arrays
41
- - `x, y` - Variables for x and y axes
42
- - `hue` - Grouping variable for color encoding
43
- - `size` - Grouping variable for line width
44
- - `style` - Grouping variable for line style (dashes)
45
- - `units` - Grouping variable for sampling units (no aggregation within units)
46
- - `estimator` - Function for aggregating across observations (default: mean)
47
- - `errorbar` - Method for error bars: "sd", "se", "pi", ("ci", level), ("pi", level), or None
48
- - `n_boot` - Number of bootstrap iterations for CI computation
49
- - `seed` - Random seed for reproducible bootstrapping
50
- - `sort` - Sort data before plotting
51
- - `err_style` - "band" or "bars" for error representation
52
- - `err_kws` - Additional parameters for error representation
53
- - `markers` - Marker style(s) for emphasizing data points
54
- - `dashes` - Dash style(s) for lines
55
- - `legend` - How to draw legend
56
- - `ax` - Matplotlib axes to plot on
57
-
58
- **Example:**
59
- ```python
60
- sns.lineplot(data=timeseries, x='time', y='signal',
61
- hue='condition', style='subject',
62
- errorbar=('ci', 95), markers=True)
63
- ```
64
-
65
- ### relplot()
66
-
67
- **Purpose:** Figure-level interface for drawing relational plots (scatter or line) onto a FacetGrid.
68
-
69
- **Key Parameters:**
70
- All parameters from `scatterplot()` and `lineplot()`, plus:
71
- - `kind` - "scatter" or "line"
72
- - `col` - Categorical variable for column facets
73
- - `row` - Categorical variable for row facets
74
- - `col_wrap` - Wrap columns after this many columns
75
- - `col_order` - Order for column facet levels
76
- - `row_order` - Order for row facet levels
77
- - `height` - Height of each facet in inches
78
- - `aspect` - Aspect ratio (width = height * aspect)
79
- - `facet_kws` - Additional parameters for FacetGrid
80
-
81
- **Example:**
82
- ```python
83
- sns.relplot(data=df, x='time', y='measurement',
84
- hue='treatment', style='batch',
85
- col='cell_line', row='timepoint',
86
- kind='line', height=3, aspect=1.5)
87
- ```
88
-
89
- ## Distribution Plots
90
-
91
- ### histplot()
92
-
93
- **Purpose:** Plot univariate or bivariate histograms with flexible binning.
94
-
95
- **Key Parameters:**
96
- - `data` - DataFrame, array, or dict
97
- - `x, y` - Variables (y optional for bivariate)
98
- - `hue` - Grouping variable
99
- - `weights` - Variable for weighting observations
100
- - `stat` - Aggregate statistic: "count", "frequency", "probability", "percent", "density"
101
- - `bins` - Number of bins, bin edges, or method ("auto", "fd", "doane", "scott", "stone", "rice", "sturges", "sqrt")
102
- - `binwidth` - Width of bins (overrides bins)
103
- - `binrange` - Range for binning (tuple)
104
- - `discrete` - Treat x as discrete (centers bars on values)
105
- - `cumulative` - Compute cumulative distribution
106
- - `common_bins` - Use same bins for all hue levels
107
- - `common_norm` - Normalize across hue levels
108
- - `multiple` - How to handle hue: "layer", "dodge", "stack", "fill"
109
- - `element` - Visual element: "bars", "step", "poly"
110
- - `fill` - Fill bars/elements
111
- - `shrink` - Scale bar width (for multiple="dodge")
112
- - `kde` - Overlay KDE estimate
113
- - `kde_kws` - Parameters for KDE
114
- - `line_kws` - Parameters for step/poly elements
115
- - `thresh` - Minimum count threshold for bins
116
- - `pthresh` - Minimum probability threshold
117
- - `pmax` - Maximum probability for color scaling
118
- - `log_scale` - Log scale for axis (bool or base)
119
- - `legend` - Whether to show legend
120
- - `ax` - Matplotlib axes
121
-
122
- **Example:**
123
- ```python
124
- sns.histplot(data=df, x='measurement', hue='condition',
125
- stat='density', bins=30, kde=True,
126
- multiple='layer', alpha=0.5)
127
- ```
128
-
129
- ### kdeplot()
130
-
131
- **Purpose:** Plot univariate or bivariate kernel density estimates.
132
-
133
- **Key Parameters:**
134
- - `data` - DataFrame, array, or dict
135
- - `x, y` - Variables (y optional for bivariate)
136
- - `hue` - Grouping variable
137
- - `weights` - Variable for weighting observations
138
- - `palette` - Color palette
139
- - `hue_order` - Order for hue levels
140
- - `hue_norm` - Normalization for numeric hue
141
- - `multiple` - How to handle hue: "layer", "stack", "fill"
142
- - `common_norm` - Normalize across hue levels
143
- - `common_grid` - Use same grid for all hue levels
144
- - `cumulative` - Compute cumulative distribution
145
- - `bw_method` - Method for bandwidth: "scott", "silverman", or scalar
146
- - `bw_adjust` - Bandwidth multiplier (higher = smoother)
147
- - `log_scale` - Log scale for axis
148
- - `levels` - Number or values for contour levels (bivariate)
149
- - `thresh` - Minimum density threshold for contours
150
- - `gridsize` - Grid resolution
151
- - `cut` - Extension beyond data extremes (in bandwidth units)
152
- - `clip` - Data range for curve (tuple)
153
- - `fill` - Fill area under curve/contours
154
- - `legend` - Whether to show legend
155
- - `ax` - Matplotlib axes
156
-
157
- **Example:**
158
- ```python
159
- # Univariate
160
- sns.kdeplot(data=df, x='measurement', hue='condition',
161
- fill=True, common_norm=False, bw_adjust=1.5)
162
-
163
- # Bivariate
164
- sns.kdeplot(data=df, x='var1', y='var2',
165
- fill=True, levels=10, thresh=0.05)
166
- ```
167
-
168
- ### ecdfplot()
169
-
170
- **Purpose:** Plot empirical cumulative distribution functions.
171
-
172
- **Key Parameters:**
173
- - `data` - DataFrame, array, or dict
174
- - `x, y` - Variables (specify one)
175
- - `hue` - Grouping variable
176
- - `weights` - Variable for weighting observations
177
- - `stat` - "proportion" or "count"
178
- - `complementary` - Plot complementary CDF (1 - ECDF)
179
- - `palette` - Color palette
180
- - `hue_order` - Order for hue levels
181
- - `hue_norm` - Normalization for numeric hue
182
- - `log_scale` - Log scale for axis
183
- - `legend` - Whether to show legend
184
- - `ax` - Matplotlib axes
185
-
186
- **Example:**
187
- ```python
188
- sns.ecdfplot(data=df, x='response_time', hue='treatment',
189
- stat='proportion', complementary=False)
190
- ```
191
-
192
- ### rugplot()
193
-
194
- **Purpose:** Plot tick marks showing individual observations along an axis.
195
-
196
- **Key Parameters:**
197
- - `data` - DataFrame, array, or dict
198
- - `x, y` - Variable (specify one)
199
- - `hue` - Grouping variable
200
- - `height` - Height of ticks (proportion of axis)
201
- - `expand_margins` - Add margin space for rug
202
- - `palette` - Color palette
203
- - `hue_order` - Order for hue levels
204
- - `hue_norm` - Normalization for numeric hue
205
- - `legend` - Whether to show legend
206
- - `ax` - Matplotlib axes
207
-
208
- **Example:**
209
- ```python
210
- sns.rugplot(data=df, x='value', hue='category', height=0.05)
211
- ```
212
-
213
- ### displot()
214
-
215
- **Purpose:** Figure-level interface for distribution plots onto a FacetGrid.
216
-
217
- **Key Parameters:**
218
- All parameters from `histplot()`, `kdeplot()`, and `ecdfplot()`, plus:
219
- - `kind` - "hist", "kde", "ecdf"
220
- - `rug` - Add rug plot on marginal axes
221
- - `rug_kws` - Parameters for rug plot
222
- - `col` - Categorical variable for column facets
223
- - `row` - Categorical variable for row facets
224
- - `col_wrap` - Wrap columns
225
- - `col_order` - Order for column facets
226
- - `row_order` - Order for row facets
227
- - `height` - Height of each facet
228
- - `aspect` - Aspect ratio
229
- - `facet_kws` - Additional parameters for FacetGrid
230
-
231
- **Example:**
232
- ```python
233
- sns.displot(data=df, x='measurement', hue='treatment',
234
- col='timepoint', kind='kde', fill=True,
235
- height=3, aspect=1.5, rug=True)
236
- ```
237
-
238
- ### jointplot()
239
-
240
- **Purpose:** Draw a bivariate plot with marginal univariate plots.
241
-
242
- **Key Parameters:**
243
- - `data` - DataFrame
244
- - `x, y` - Variables for x and y axes
245
- - `hue` - Grouping variable
246
- - `kind` - "scatter", "kde", "hist", "hex", "reg", "resid"
247
- - `height` - Size of the figure (square)
248
- - `ratio` - Ratio of joint to marginal axes
249
- - `space` - Space between joint and marginal axes
250
- - `dropna` - Drop missing values
251
- - `xlim, ylim` - Axis limits (tuples)
252
- - `marginal_ticks` - Show ticks on marginal axes
253
- - `joint_kws` - Parameters for joint plot
254
- - `marginal_kws` - Parameters for marginal plots
255
- - `hue_order` - Order for hue levels
256
- - `palette` - Color palette
257
-
258
- **Example:**
259
- ```python
260
- sns.jointplot(data=df, x='var1', y='var2', hue='group',
261
- kind='scatter', height=6, ratio=4,
262
- joint_kws={'alpha': 0.5})
263
- ```
264
-
265
- ### pairplot()
266
-
267
- **Purpose:** Plot pairwise relationships in a dataset.
268
-
269
- **Key Parameters:**
270
- - `data` - DataFrame
271
- - `hue` - Grouping variable for color encoding
272
- - `hue_order` - Order for hue levels
273
- - `palette` - Color palette
274
- - `vars` - Variables to plot (default: all numeric)
275
- - `x_vars, y_vars` - Variables for x and y axes (non-square grid)
276
- - `kind` - "scatter", "kde", "hist", "reg"
277
- - `diag_kind` - "auto", "hist", "kde", None
278
- - `markers` - Marker style(s)
279
- - `height` - Height of each facet
280
- - `aspect` - Aspect ratio
281
- - `corner` - Plot only lower triangle
282
- - `dropna` - Drop missing values
283
- - `plot_kws` - Parameters for non-diagonal plots
284
- - `diag_kws` - Parameters for diagonal plots
285
- - `grid_kws` - Parameters for PairGrid
286
-
287
- **Example:**
288
- ```python
289
- sns.pairplot(data=df, hue='species', palette='Set2',
290
- vars=['sepal_length', 'sepal_width', 'petal_length'],
291
- corner=True, height=2.5)
292
- ```
293
-
294
- ## Categorical Plots
295
-
296
- ### stripplot()
297
-
298
- **Purpose:** Draw a categorical scatterplot with jittered points.
299
-
300
- **Key Parameters:**
301
- - `data` - DataFrame, array, or dict
302
- - `x, y` - Variables (one categorical, one continuous)
303
- - `hue` - Grouping variable
304
- - `order` - Order for categorical levels
305
- - `hue_order` - Order for hue levels
306
- - `jitter` - Amount of jitter: True, float, or False
307
- - `dodge` - Separate hue levels side-by-side
308
- - `orient` - "v" or "h" (usually inferred)
309
- - `color` - Single color for all elements
310
- - `palette` - Color palette
311
- - `size` - Marker size
312
- - `edgecolor` - Marker edge color
313
- - `linewidth` - Marker edge width
314
- - `native_scale` - Use numeric scale for categorical axis
315
- - `formatter` - Formatter for categorical axis
316
- - `legend` - Whether to show legend
317
- - `ax` - Matplotlib axes
318
-
319
- **Example:**
320
- ```python
321
- sns.stripplot(data=df, x='day', y='total_bill',
322
- hue='sex', dodge=True, jitter=0.2)
323
- ```
324
-
325
- ### swarmplot()
326
-
327
- **Purpose:** Draw a categorical scatterplot with non-overlapping points.
328
-
329
- **Key Parameters:**
330
- Same as `stripplot()`, except:
331
- - No `jitter` parameter
332
- - `size` - Marker size (important for avoiding overlap)
333
- - `warn_thresh` - Threshold for warning about too many points (default: 0.05)
334
-
335
- **Note:** Computationally intensive for large datasets. Use stripplot for >1000 points.
336
-
337
- **Example:**
338
- ```python
339
- sns.swarmplot(data=df, x='day', y='total_bill',
340
- hue='time', dodge=True, size=5)
341
- ```
342
-
343
- ### boxplot()
344
-
345
- **Purpose:** Draw a box plot showing quartiles and outliers.
346
-
347
- **Key Parameters:**
348
- - `data` - DataFrame, array, or dict
349
- - `x, y` - Variables (one categorical, one continuous)
350
- - `hue` - Grouping variable
351
- - `order` - Order for categorical levels
352
- - `hue_order` - Order for hue levels
353
- - `orient` - "v" or "h"
354
- - `color` - Single color for boxes
355
- - `palette` - Color palette
356
- - `saturation` - Color saturation intensity
357
- - `width` - Width of boxes
358
- - `dodge` - Separate hue levels side-by-side
359
- - `fliersize` - Size of outlier markers
360
- - `linewidth` - Box line width
361
- - `whis` - IQR multiplier for whiskers (default: 1.5)
362
- - `notch` - Draw notched boxes
363
- - `showcaps` - Show whisker caps
364
- - `showmeans` - Show mean value
365
- - `meanprops` - Properties for mean marker
366
- - `boxprops` - Properties for boxes
367
- - `whiskerprops` - Properties for whiskers
368
- - `capprops` - Properties for caps
369
- - `flierprops` - Properties for outliers
370
- - `medianprops` - Properties for median line
371
- - `native_scale` - Use numeric scale
372
- - `formatter` - Formatter for categorical axis
373
- - `legend` - Whether to show legend
374
- - `ax` - Matplotlib axes
375
-
376
- **Example:**
377
- ```python
378
- sns.boxplot(data=df, x='day', y='total_bill',
379
- hue='smoker', palette='Set3',
380
- showmeans=True, notch=True)
381
- ```
382
-
383
- ### violinplot()
384
-
385
- **Purpose:** Draw a violin plot combining boxplot and KDE.
386
-
387
- **Key Parameters:**
388
- Same as `boxplot()`, plus:
389
- - `bw_method` - KDE bandwidth method
390
- - `bw_adjust` - KDE bandwidth multiplier
391
- - `cut` - KDE extension beyond extremes
392
- - `density_norm` - "area", "count", "width"
393
- - `common_norm` - Normalize density across hue/facet groups
394
- - `inner` - "box", "quartile", "point", "stick", None
395
- - `split` - Split violins for hue comparison
396
- - `inner_kws` - Additional parameters for interior artists
397
- - `gridsize` - KDE grid resolution
398
-
399
- **Example:**
400
- ```python
401
- sns.violinplot(data=df, x='day', y='total_bill',
402
- hue='sex', split=True, inner='quartile',
403
- density_norm='area', common_norm=False,
404
- palette='muted')
405
- ```
406
-
407
- ### boxenplot()
408
-
409
- **Purpose:** Draw enhanced box plot for larger datasets showing more quantiles.
410
-
411
- **Key Parameters:**
412
- Same as `boxplot()`, plus:
413
- - `k_depth` - "tukey", "proportion", "trustworthy", "full", or int
414
- - `outlier_prop` - Proportion of data as outliers
415
- - `trust_alpha` - Alpha for trustworthy depth
416
- - `width_method` - How box widths represent distribution: "exponential", "linear", "area"
417
- - `showfliers` - Show outlier points
418
-
419
- **Example:**
420
- ```python
421
- sns.boxenplot(data=df, x='day', y='total_bill',
422
- hue='time', width_method='area', palette='Set2')
423
- ```
424
-
425
- ### barplot()
426
-
427
- **Purpose:** Draw a bar plot with error bars showing statistical estimates.
428
-
429
- **Key Parameters:**
430
- - `data` - DataFrame, array, or dict
431
- - `x, y` - Variables (one categorical, one continuous)
432
- - `hue` - Grouping variable
433
- - `order` - Order for categorical levels
434
- - `hue_order` - Order for hue levels
435
- - `estimator` - Aggregation function (default: mean)
436
- - `errorbar` - Error representation: "sd", "se", "pi", ("ci", level), ("pi", level), or None
437
- - `n_boot` - Bootstrap iterations
438
- - `seed` - Random seed
439
- - `units` - Identifier for sampling units
440
- - `weights` - Observation weights
441
- - `orient` - "v" or "h"
442
- - `color` - Single bar color
443
- - `palette` - Color palette
444
- - `saturation` - Color saturation
445
- - `width` - Bar width
446
- - `dodge` - Separate hue levels side-by-side
447
- - `err_kws` - Matplotlib keyword arguments for error bars
448
- - `capsize` - Error bar cap width
449
- - `native_scale` - Use numeric scale
450
- - `formatter` - Formatter for categorical axis
451
- - `legend` - Whether to show legend
452
- - `ax` - Matplotlib axes
453
-
454
- **Example:**
455
- ```python
456
- sns.barplot(data=df, x='day', y='total_bill',
457
- hue='sex', estimator='median',
458
- errorbar=('ci', 95), capsize=0.1,
459
- err_kws={'linewidth': 1.5})
460
- ```
461
-
462
- ### countplot()
463
-
464
- **Purpose:** Show counts of observations in each categorical bin.
465
-
466
- **Key Parameters:**
467
- Same as `barplot()`, but:
468
- - Only specify one of x or y (the categorical variable)
469
- - No estimator or errorbar (shows counts)
470
- - `stat` - "count" or "percent"
471
-
472
- **Example:**
473
- ```python
474
- sns.countplot(data=df, x='day', hue='time',
475
- palette='pastel', dodge=True)
476
- ```
477
-
478
- ### pointplot()
479
-
480
- **Purpose:** Show point estimates and confidence intervals with connecting lines.
481
-
482
- **Key Parameters:**
483
- Same as `barplot()`, plus:
484
- - `markers` - Marker style(s)
485
- - `linestyles` - Line style(s)
486
- - `scale` - Scale for markers
487
- - `join` - Connect points with lines
488
- - `capsize` - Error bar cap width
489
-
490
- **Example:**
491
- ```python
492
- sns.pointplot(data=df, x='time', y='total_bill',
493
- hue='sex', markers=['o', 's'],
494
- linestyles=['-', '--'], capsize=0.1)
495
- ```
496
-
497
- ### catplot()
498
-
499
- **Purpose:** Figure-level interface for categorical plots onto a FacetGrid.
500
-
501
- **Key Parameters:**
502
- All parameters from categorical plots, plus:
503
- - `kind` - "strip", "swarm", "box", "violin", "boxen", "bar", "point", "count"
504
- - `col` - Categorical variable for column facets
505
- - `row` - Categorical variable for row facets
506
- - `col_wrap` - Wrap columns
507
- - `col_order` - Order for column facets
508
- - `row_order` - Order for row facets
509
- - `height` - Height of each facet
510
- - `aspect` - Aspect ratio
511
- - `sharex, sharey` - Share axes across facets
512
- - `legend` - Whether to show legend
513
- - `legend_out` - Place legend outside figure
514
- - `facet_kws` - Additional FacetGrid parameters
515
-
516
- **Example:**
517
- ```python
518
- sns.catplot(data=df, x='day', y='total_bill',
519
- hue='smoker', col='time',
520
- kind='violin', split=True,
521
- height=4, aspect=0.8)
522
- ```
523
-
524
- ## Regression Plots
525
-
526
- ### regplot()
527
-
528
- **Purpose:** Plot data and a linear regression fit.
529
-
530
- **Key Parameters:**
531
- - `data` - DataFrame
532
- - `x, y` - Variables or data vectors
533
- - `x_estimator` - Apply estimator to x bins
534
- - `x_bins` - Bin x for estimator
535
- - `x_ci` - CI for binned estimates
536
- - `scatter` - Show scatter points
537
- - `fit_reg` - Plot regression line
538
- - `ci` - CI for regression estimate (int or None)
539
- - `n_boot` - Bootstrap iterations for CI
540
- - `units` - Identifier for sampling units
541
- - `seed` - Random seed
542
- - `order` - Polynomial regression order
543
- - `logistic` - Fit logistic regression
544
- - `lowess` - Fit lowess smoother
545
- - `robust` - Fit robust regression
546
- - `logx` - Log-transform x
547
- - `x_partial, y_partial` - Partial regression (regress out variables)
548
- - `truncate` - Limit regression line to data range
549
- - `dropna` - Drop missing values
550
- - `x_jitter, y_jitter` - Add jitter to data
551
- - `label` - Label for legend
552
- - `color` - Color for all elements
553
- - `marker` - Marker style
554
- - `scatter_kws` - Parameters for scatter
555
- - `line_kws` - Parameters for regression line
556
- - `ax` - Matplotlib axes
557
-
558
- **Example:**
559
- ```python
560
- sns.regplot(data=df, x='total_bill', y='tip',
561
- order=2, robust=True, ci=95,
562
- scatter_kws={'alpha': 0.5})
563
- ```
564
-
565
- ### lmplot()
566
-
567
- **Purpose:** Figure-level interface for regression plots onto a FacetGrid.
568
-
569
- **Key Parameters:**
570
- All parameters from `regplot()`, plus:
571
- - `hue` - Grouping variable
572
- - `col` - Column facets
573
- - `row` - Row facets
574
- - `palette` - Color palette
575
- - `col_wrap` - Wrap columns
576
- - `height` - Facet height
577
- - `aspect` - Aspect ratio
578
- - `markers` - Marker style(s)
579
- - `sharex, sharey` - Share axes
580
- - `hue_order` - Order for hue levels
581
- - `col_order` - Order for column facets
582
- - `row_order` - Order for row facets
583
- - `legend` - Whether to show legend
584
- - `legend_out` - Place legend outside
585
- - `facet_kws` - FacetGrid parameters
586
-
587
- **Example:**
588
- ```python
589
- sns.lmplot(data=df, x='total_bill', y='tip',
590
- hue='smoker', col='time', row='sex',
591
- height=3, aspect=1.2, ci=None)
592
- ```
593
-
594
- ### residplot()
595
-
596
- **Purpose:** Plot residuals of a regression.
597
-
598
- **Key Parameters:**
599
- Same as `regplot()`, but:
600
- - Always plots residuals (y - predicted) vs x
601
- - Adds horizontal line at y=0
602
- - `lowess` - Fit lowess smoother to residuals
603
-
604
- **Example:**
605
- ```python
606
- sns.residplot(data=df, x='x', y='y', lowess=True,
607
- scatter_kws={'alpha': 0.5})
608
- ```
609
-
610
- ## Matrix Plots
611
-
612
- ### heatmap()
613
-
614
- **Purpose:** Plot rectangular data as a color-encoded matrix.
615
-
616
- **Key Parameters:**
617
- - `data` - 2D array-like data
618
- - `vmin, vmax` - Anchor values for colormap
619
- - `cmap` - Colormap name or object
620
- - `center` - Value at colormap center
621
- - `robust` - Use robust quantiles for colormap range
622
- - `annot` - Annotate cells: True, False, or array
623
- - `fmt` - Format string for annotations (e.g., ".2f")
624
- - `annot_kws` - Parameters for annotations
625
- - `linewidths` - Width of cell borders
626
- - `linecolor` - Color of cell borders
627
- - `cbar` - Draw colorbar
628
- - `cbar_kws` - Colorbar parameters
629
- - `cbar_ax` - Axes for colorbar
630
- - `square` - Force square cells
631
- - `xticklabels, yticklabels` - Tick labels (True, False, int, or list)
632
- - `mask` - Boolean array to mask cells
633
- - `ax` - Matplotlib axes
634
-
635
- **Example:**
636
- ```python
637
- # Correlation matrix
638
- corr = df.corr()
639
- mask = np.triu(np.ones_like(corr, dtype=bool))
640
- sns.heatmap(corr, mask=mask, annot=True, fmt='.2f',
641
- cmap='coolwarm', center=0, square=True,
642
- linewidths=1, cbar_kws={'shrink': 0.8})
643
- ```
644
-
645
- ### clustermap()
646
-
647
- **Purpose:** Plot a hierarchically-clustered heatmap.
648
-
649
- **Key Parameters:**
650
- All parameters from `heatmap()`, plus:
651
- - `pivot_kws` - Parameters for pivoting (if needed)
652
- - `method` - Linkage method: "single", "complete", "average", "weighted", "centroid", "median", "ward"
653
- - `metric` - Distance metric for clustering
654
- - `standard_scale` - Standardize data: 0 (rows), 1 (columns), or None
655
- - `z_score` - Z-score normalize data: 0 (rows), 1 (columns), or None
656
- - `row_cluster, col_cluster` - Cluster rows/columns
657
- - `row_linkage, col_linkage` - Precomputed linkage matrices
658
- - `row_colors, col_colors` - Additional color annotations
659
- - `dendrogram_ratio` - Ratio of dendrogram to heatmap
660
- - `colors_ratio` - Ratio of color annotations to heatmap
661
- - `cbar_pos` - Colorbar position (tuple: x, y, width, height)
662
- - `tree_kws` - Parameters for dendrogram
663
- - `figsize` - Figure size
664
-
665
- **Example:**
666
- ```python
667
- sns.clustermap(data, method='average', metric='euclidean',
668
- z_score=0, cmap='viridis',
669
- row_colors=row_colors, col_colors=col_colors,
670
- figsize=(12, 12), dendrogram_ratio=0.1)
671
- ```
672
-
673
- ## Multi-Plot Grids
674
-
675
- ### FacetGrid
676
-
677
- **Purpose:** Multi-plot grid for plotting conditional relationships.
678
-
679
- **Initialization:**
680
- ```python
681
- g = sns.FacetGrid(data, row=None, col=None, hue=None,
682
- col_wrap=None, sharex=True, sharey=True,
683
- height=3, aspect=1, palette=None,
684
- row_order=None, col_order=None, hue_order=None,
685
- hue_kws=None, dropna=False, legend_out=True,
686
- despine=True, margin_titles=False,
687
- xlim=None, ylim=None, subplot_kws=None,
688
- gridspec_kws=None)
689
- ```
690
-
691
- **Methods:**
692
- - `map(func, *args, **kwargs)` - Apply function to each facet
693
- - `map_dataframe(func, *args, **kwargs)` - Apply function with full DataFrame
694
- - `set_axis_labels(x_var, y_var)` - Set axis labels
695
- - `set_titles(template, **kwargs)` - Set subplot titles
696
- - `set(kwargs)` - Set attributes on all axes
697
- - `add_legend(legend_data, title, label_order, **kwargs)` - Add legend
698
- - `savefig(*args, **kwargs)` - Save figure
699
-
700
- **Example:**
701
- ```python
702
- g = sns.FacetGrid(df, col='time', row='sex', hue='smoker',
703
- height=3, aspect=1.5, margin_titles=True)
704
- g.map(sns.scatterplot, 'total_bill', 'tip', alpha=0.7)
705
- g.add_legend()
706
- g.set_axis_labels('Total Bill ($)', 'Tip ($)')
707
- g.set_titles('{col_name} | {row_name}')
708
- ```
709
-
710
- ### PairGrid
711
-
712
- **Purpose:** Grid for plotting pairwise relationships in a dataset.
713
-
714
- **Initialization:**
715
- ```python
716
- g = sns.PairGrid(data, hue=None, vars=None,
717
- x_vars=None, y_vars=None,
718
- hue_order=None, palette=None,
719
- hue_kws=None, corner=False,
720
- diag_sharey=True, height=2.5,
721
- aspect=1, layout_pad=0.5,
722
- despine=True, dropna=False)
723
- ```
724
-
725
- **Methods:**
726
- - `map(func, **kwargs)` - Apply function to all subplots
727
- - `map_diag(func, **kwargs)` - Apply to diagonal
728
- - `map_offdiag(func, **kwargs)` - Apply to off-diagonal
729
- - `map_upper(func, **kwargs)` - Apply to upper triangle
730
- - `map_lower(func, **kwargs)` - Apply to lower triangle
731
- - `add_legend(legend_data, **kwargs)` - Add legend
732
- - `savefig(*args, **kwargs)` - Save figure
733
-
734
- **Example:**
735
- ```python
736
- g = sns.PairGrid(df, hue='species', vars=['a', 'b', 'c', 'd'],
737
- corner=True, height=2.5)
738
- g.map_upper(sns.scatterplot, alpha=0.5)
739
- g.map_lower(sns.kdeplot)
740
- g.map_diag(sns.histplot, kde=True)
741
- g.add_legend()
742
- ```
743
-
744
- ### JointGrid
745
-
746
- **Purpose:** Grid for bivariate plot with marginal univariate plots.
747
-
748
- **Initialization:**
749
- ```python
750
- g = sns.JointGrid(data=None, x=None, y=None, hue=None,
751
- height=6, ratio=5, space=0.2,
752
- dropna=False, xlim=None, ylim=None,
753
- marginal_ticks=False, hue_order=None,
754
- palette=None)
755
- ```
756
-
757
- **Methods:**
758
- - `plot(joint_func, marginal_func, **kwargs)` - Plot both joint and marginals
759
- - `plot_joint(func, **kwargs)` - Plot joint distribution
760
- - `plot_marginals(func, **kwargs)` - Plot marginal distributions
761
- - `refline(x, y, **kwargs)` - Add reference line
762
- - `set_axis_labels(xlabel, ylabel, **kwargs)` - Set axis labels
763
- - `savefig(*args, **kwargs)` - Save figure
764
-
765
- **Example:**
766
- ```python
767
- g = sns.JointGrid(data=df, x='x', y='y', hue='group',
768
- height=6, ratio=5, space=0.2)
769
- g.plot_joint(sns.scatterplot, alpha=0.5)
770
- g.plot_marginals(sns.histplot, kde=True)
771
- g.set_axis_labels('Variable X', 'Variable Y')
772
- ```