@pikaa-ai/pikaa 0.3.1 → 0.3.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1870) hide show
  1. package/dist/cli.js +1169 -601
  2. package/dist/index.js +525 -204
  3. package/package.json +5 -3
  4. package/skills/adaptyv/references/api-endpoints.md +0 -690
  5. package/skills/aeon/references/anomaly_detection.md +0 -154
  6. package/skills/aeon/references/classification.md +0 -144
  7. package/skills/aeon/references/clustering.md +0 -123
  8. package/skills/aeon/references/datasets_benchmarking.md +0 -392
  9. package/skills/aeon/references/distances.md +0 -256
  10. package/skills/aeon/references/forecasting.md +0 -109
  11. package/skills/aeon/references/networks.md +0 -289
  12. package/skills/aeon/references/regression.md +0 -118
  13. package/skills/aeon/references/segmentation.md +0 -163
  14. package/skills/aeon/references/similarity_search.md +0 -187
  15. package/skills/aeon/references/transformations.md +0 -246
  16. package/skills/analytical-method-validation/assets/validation-protocol-template.md +0 -106
  17. package/skills/analytical-method-validation/assets/validation-report-template.md +0 -116
  18. package/skills/analytical-method-validation/references/compendial-and-clsi.md +0 -96
  19. package/skills/analytical-method-validation/references/framework-selection.md +0 -87
  20. package/skills/analytical-method-validation/references/ich-m10-bioanalytical.md +0 -123
  21. package/skills/analytical-method-validation/references/ich-q2r2.md +0 -229
  22. package/skills/analytical-method-validation/references/source-ledger.md +0 -125
  23. package/skills/analytical-method-validation/references/statistics.md +0 -209
  24. package/skills/analytical-method-validation/scripts/_catalog.py +0 -499
  25. package/skills/analytical-method-validation/scripts/_common.py +0 -955
  26. package/skills/analytical-method-validation/scripts/check_accuracy_precision.py +0 -328
  27. package/skills/analytical-method-validation/scripts/check_bioanalytical_run.py +0 -293
  28. package/skills/analytical-method-validation/scripts/check_detection_limits.py +0 -310
  29. package/skills/analytical-method-validation/scripts/check_response.py +0 -243
  30. package/skills/analytical-method-validation/scripts/compare_methods.py +0 -215
  31. package/skills/analytical-method-validation/scripts/plan_validation.py +0 -381
  32. package/skills/anndata/references/best_practices.md +0 -532
  33. package/skills/anndata/references/concatenation.md +0 -399
  34. package/skills/anndata/references/data_structure.md +0 -314
  35. package/skills/anndata/references/io_operations.md +0 -466
  36. package/skills/anndata/references/manipulation.md +0 -516
  37. package/skills/arbor/references/arbor-upstream.md +0 -91
  38. package/skills/arbor/references/executor-brief.md +0 -68
  39. package/skills/arbor/references/htr-methodology.md +0 -177
  40. package/skills/arbor/references/report-template.md +0 -39
  41. package/skills/arbor/scripts/tree.py +0 -564
  42. package/skills/arboreto/references/algorithms.md +0 -152
  43. package/skills/arboreto/references/basic_inference.md +0 -181
  44. package/skills/arboreto/references/distributed_computing.md +0 -242
  45. package/skills/arboreto/scripts/basic_grn_inference.py +0 -107
  46. package/skills/astropy/references/coordinates.md +0 -280
  47. package/skills/astropy/references/cosmology.md +0 -309
  48. package/skills/astropy/references/fits.md +0 -398
  49. package/skills/astropy/references/tables.md +0 -495
  50. package/skills/astropy/references/time.md +0 -412
  51. package/skills/astropy/references/units.md +0 -178
  52. package/skills/astropy/references/wcs_and_other_modules.md +0 -377
  53. package/skills/autoskill/config.yaml +0 -53
  54. package/skills/autoskill/references/https-proxy.md +0 -62
  55. package/skills/autoskill/references/screenpipe-config.yaml +0 -61
  56. package/skills/autoskill/scripts/autoskill.py +0 -35
  57. package/skills/autoskill/scripts/backends.py +0 -116
  58. package/skills/autoskill/scripts/cluster.py +0 -54
  59. package/skills/autoskill/scripts/doctor.py +0 -108
  60. package/skills/autoskill/scripts/fetch_window.py +0 -33
  61. package/skills/autoskill/scripts/match_skills.py +0 -46
  62. package/skills/autoskill/scripts/promote.py +0 -58
  63. package/skills/autoskill/scripts/redact.py +0 -40
  64. package/skills/autoskill/scripts/run.py +0 -194
  65. package/skills/autoskill/scripts/synthesize.py +0 -72
  66. package/skills/benchling-integration/references/api_endpoints.md +0 -883
  67. package/skills/benchling-integration/references/authentication.md +0 -390
  68. package/skills/benchling-integration/references/core_capabilities.md +0 -355
  69. package/skills/benchling-integration/references/eventbridge.md +0 -255
  70. package/skills/benchling-integration/references/sdk_reference.md +0 -772
  71. package/skills/bids/references/beps.yml +0 -637
  72. package/skills/bids/references/bids_schema.json +0 -21015
  73. package/skills/bids/references/bids_specification.md +0 -165
  74. package/skills/bids/references/conversion_tools.md +0 -475
  75. package/skills/bids/references/core_workflows.md +0 -552
  76. package/skills/bids/references/metadata_fields.md +0 -365
  77. package/skills/bids/scripts/update_schema.py +0 -89
  78. package/skills/biopython/references/advanced.md +0 -580
  79. package/skills/biopython/references/alignment.md +0 -377
  80. package/skills/biopython/references/blast.md +0 -463
  81. package/skills/biopython/references/databases.md +0 -492
  82. package/skills/biopython/references/phylogenetics.md +0 -566
  83. package/skills/biopython/references/sequence_io.md +0 -289
  84. package/skills/biopython/references/structure.md +0 -564
  85. package/skills/bioservices/references/identifier_mapping.md +0 -685
  86. package/skills/bioservices/references/services_reference.md +0 -638
  87. package/skills/bioservices/references/workflow_patterns.md +0 -813
  88. package/skills/bioservices/scripts/batch_id_converter.py +0 -347
  89. package/skills/bioservices/scripts/compound_cross_reference.py +0 -387
  90. package/skills/bioservices/scripts/pathway_analysis.py +0 -309
  91. package/skills/bioservices/scripts/protein_analysis_workflow.py +0 -441
  92. package/skills/bulk-rnaseq/references/counts-and-handoff.md +0 -91
  93. package/skills/bulk-rnaseq/references/design-and-qc.md +0 -68
  94. package/skills/bulk-rnaseq/references/upstream-manual.md +0 -128
  95. package/skills/bulk-rnaseq/references/upstream-nfcore.md +0 -108
  96. package/skills/bulk-rnaseq/scripts/build_counts_matrix.py +0 -203
  97. package/skills/bulk-rnaseq/scripts/validate_samplesheet.py +0 -206
  98. package/skills/cellxgene-census/references/census_schema.md +0 -218
  99. package/skills/cellxgene-census/references/common_patterns.md +0 -368
  100. package/skills/cellxgene-census/references/core_workflow_patterns.md +0 -297
  101. package/skills/cirq/references/building.md +0 -307
  102. package/skills/cirq/references/experiments.md +0 -572
  103. package/skills/cirq/references/hardware.md +0 -527
  104. package/skills/cirq/references/noise.md +0 -514
  105. package/skills/cirq/references/simulation.md +0 -353
  106. package/skills/cirq/references/transformation.md +0 -416
  107. package/skills/citation-management/assets/bibtex_template.bib +0 -264
  108. package/skills/citation-management/assets/citation_checklist.md +0 -386
  109. package/skills/citation-management/references/best_practices.md +0 -91
  110. package/skills/citation-management/references/bibtex_formatting.md +0 -908
  111. package/skills/citation-management/references/citation_validation.md +0 -835
  112. package/skills/citation-management/references/core_workflow.md +0 -569
  113. package/skills/citation-management/references/example_workflows.md +0 -126
  114. package/skills/citation-management/references/google_scholar_search.md +0 -732
  115. package/skills/citation-management/references/metadata_extraction.md +0 -870
  116. package/skills/citation-management/references/pubmed_search.md +0 -839
  117. package/skills/citation-management/references/script_reference.md +0 -250
  118. package/skills/citation-management/references/search_strategies.md +0 -110
  119. package/skills/citation-management/scripts/_common.py +0 -331
  120. package/skills/citation-management/scripts/doi_to_bibtex.py +0 -204
  121. package/skills/citation-management/scripts/extract_metadata.py +0 -690
  122. package/skills/citation-management/scripts/format_bibtex.py +0 -356
  123. package/skills/citation-management/scripts/search_google_scholar.py +0 -268
  124. package/skills/citation-management/scripts/search_openalex.py +0 -297
  125. package/skills/citation-management/scripts/search_pubmed.py +0 -419
  126. package/skills/citation-management/scripts/validate_citations.py +0 -688
  127. package/skills/clinical-decision-support/assets/aggregate_cohort_table_template.json +0 -114
  128. package/skills/clinical-decision-support/assets/aggregate_model_evaluation_template.json +0 -115
  129. package/skills/clinical-decision-support/assets/artifact_intended_use_template.json +0 -81
  130. package/skills/clinical-decision-support/assets/decision_logic_traceability_template.json +0 -108
  131. package/skills/clinical-decision-support/assets/deidentification_checklist_template.json +0 -176
  132. package/skills/clinical-decision-support/assets/evidence_profile_template.json +0 -139
  133. package/skills/clinical-decision-support/assets/survival_analysis_plan_template.json +0 -134
  134. package/skills/clinical-decision-support/references/cohort_evaluation.md +0 -142
  135. package/skills/clinical-decision-support/references/decision_logic_traceability.md +0 -146
  136. package/skills/clinical-decision-support/references/evidence_profiles.md +0 -153
  137. package/skills/clinical-decision-support/references/model_biomarker_evaluation.md +0 -152
  138. package/skills/clinical-decision-support/references/privacy_and_disclosure.md +0 -144
  139. package/skills/clinical-decision-support/references/regulatory_and_governance.md +0 -104
  140. package/skills/clinical-decision-support/references/safety_and_scope.md +0 -103
  141. package/skills/clinical-decision-support/references/security_validation.md +0 -60
  142. package/skills/clinical-decision-support/references/sources.md +0 -119
  143. package/skills/clinical-decision-support/references/study_reporting.md +0 -134
  144. package/skills/clinical-decision-support/references/survival_analysis.md +0 -156
  145. package/skills/clinical-decision-support/scripts/_common.py +0 -223
  146. package/skills/clinical-decision-support/scripts/cohort_table_generator.py +0 -288
  147. package/skills/clinical-decision-support/scripts/decision_logic_traceability.py +0 -313
  148. package/skills/clinical-decision-support/scripts/deidentification_checklist.py +0 -260
  149. package/skills/clinical-decision-support/scripts/evidence_profile_check.py +0 -259
  150. package/skills/clinical-decision-support/scripts/model_biomarker_evaluation.py +0 -345
  151. package/skills/clinical-decision-support/scripts/survival_plan_validator.py +0 -294
  152. package/skills/clinical-decision-support/scripts/validate_cds_artifact.py +0 -269
  153. package/skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv +0 -1
  154. package/skills/clinical-reports/assets/case_report_template.json +0 -43
  155. package/skills/clinical-reports/assets/clinical_trial_csr_template.json +0 -51
  156. package/skills/clinical-reports/assets/clinical_trial_results_template.json +0 -66
  157. package/skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json +0 -49
  158. package/skills/clinical-reports/assets/consistency_manifest_template.json +0 -15
  159. package/skills/clinical-reports/assets/deidentification_process_checklist.json +0 -56
  160. package/skills/clinical-reports/assets/lab_report_template.json +0 -36
  161. package/skills/clinical-reports/assets/pathology_report_template.json +0 -36
  162. package/skills/clinical-reports/assets/provenance_manifest_template.json +0 -17
  163. package/skills/clinical-reports/assets/quality_review_checklist.json +0 -34
  164. package/skills/clinical-reports/assets/radiology_report_template.json +0 -34
  165. package/skills/clinical-reports/assets/research_summary_template.json +0 -36
  166. package/skills/clinical-reports/assets/terminology_manifest_template.json +0 -11
  167. package/skills/clinical-reports/assets/trial_protocol_reporting_checklist.json +0 -70
  168. package/skills/clinical-reports/references/case_report_guidelines.md +0 -72
  169. package/skills/clinical-reports/references/clinical_trial_reporting.md +0 -97
  170. package/skills/clinical-reports/references/data_presentation.md +0 -92
  171. package/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -76
  172. package/skills/clinical-reports/references/medical_terminology.md +0 -84
  173. package/skills/clinical-reports/references/privacy_and_deidentification.md +0 -84
  174. package/skills/clinical-reports/references/professional_review.md +0 -78
  175. package/skills/clinical-reports/references/report_type_routing.md +0 -57
  176. package/skills/clinical-reports/references/safety_reporting.md +0 -109
  177. package/skills/clinical-reports/references/sources.md +0 -75
  178. package/skills/clinical-reports/scripts/_common.py +0 -263
  179. package/skills/clinical-reports/scripts/check_deidentification.py +0 -298
  180. package/skills/clinical-reports/scripts/consistency_checker.py +0 -390
  181. package/skills/clinical-reports/scripts/format_adverse_events.py +0 -455
  182. package/skills/clinical-reports/scripts/generate_report_template.py +0 -115
  183. package/skills/clinical-reports/scripts/provenance_validator.py +0 -263
  184. package/skills/clinical-reports/scripts/terminology_validator.py +0 -277
  185. package/skills/clinical-reports/scripts/validate_case_report.py +0 -278
  186. package/skills/clinical-reports/scripts/validate_trial_report.py +0 -534
  187. package/skills/cobrapy/references/api_quick_reference.md +0 -665
  188. package/skills/cobrapy/references/workflows.md +0 -600
  189. package/skills/consciousness-council/references/advanced-configurations.md +0 -96
  190. package/skills/dask/references/arrays.md +0 -495
  191. package/skills/dask/references/bags.md +0 -468
  192. package/skills/dask/references/best-practices.md +0 -277
  193. package/skills/dask/references/dataframes.md +0 -370
  194. package/skills/dask/references/futures.md +0 -541
  195. package/skills/dask/references/schedulers.md +0 -517
  196. package/skills/database-lookup/references/addgene.md +0 -38
  197. package/skills/database-lookup/references/alphafold.md +0 -52
  198. package/skills/database-lookup/references/alphavantage.md +0 -261
  199. package/skills/database-lookup/references/bea.md +0 -409
  200. package/skills/database-lookup/references/bindingdb.md +0 -85
  201. package/skills/database-lookup/references/biogrid.md +0 -110
  202. package/skills/database-lookup/references/bls.md +0 -235
  203. package/skills/database-lookup/references/brenda.md +0 -71
  204. package/skills/database-lookup/references/cbioportal.md +0 -206
  205. package/skills/database-lookup/references/census.md +0 -251
  206. package/skills/database-lookup/references/chebi.md +0 -103
  207. package/skills/database-lookup/references/chembl.md +0 -80
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  210. package/skills/database-lookup/references/clinvar.md +0 -91
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  212. package/skills/database-lookup/references/cosmic.md +0 -59
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  218. package/skills/database-lookup/references/drugbank.md +0 -54
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  229. package/skills/database-lookup/references/gene-ontology.md +0 -147
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  236. package/skills/database-lookup/references/human-protein-atlas.md +0 -57
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@@ -1,192 +0,0 @@
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- # PPTX poster release checklist
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-
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- Use this checklist for the final generated package and every exported/printed
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- derivative. A script pass is necessary but not sufficient.
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-
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- ## 1. Requirements and approval
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-
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- - [ ] The organizer's current poster rule is recorded with an exact source ID.
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- - [ ] The printer's current trim, bleed, safe-margin, scaling, file-format, and
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- color requirements are recorded with an exact source ID.
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- - [ ] The selected physical trim size and orientation comply with those records.
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- - [ ] No generic "standard poster size" was substituted for organizer/printer rules.
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- - [ ] Every claim, number, citation, author name, affiliation, logo, figure, and
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- asset license has an exact source ID.
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- - [ ] Every source record is marked author-verified.
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- - [ ] Every element and asset is marked author-approved.
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- - [ ] No placeholder, sample claim, invented citation, or inferred result remains.
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- - [ ] The approving author reviewed the canonical content hash after the final edit.
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-
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- Run:
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-
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- ```bash
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- python -B scripts/validate_manifest.py poster.json
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- ```
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-
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- ## 2. Safe local generation
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-
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- - [ ] Generation used the exact versions in `generation_dependencies.json`.
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- - [ ] All optional image paths are manifest-relative local PNG/JPEG files.
30
- - [ ] Every asset hash matches.
31
- - [ ] Every asset has exact provenance and a license/permission statement.
32
- - [ ] No template file, remote image, URL download, API key, environment file,
33
- image-generation service, or network service was used.
34
- - [ ] The output path was new; no existing file was replaced.
35
- - [ ] The generated file is `.pptx`, never `.pptm`.
36
-
37
- Run:
38
-
39
- ```bash
40
- uv run --with "python-pptx==1.0.2" --with "Pillow==12.3.0" \
41
- --with "lxml==6.1.1" \
42
- python -B scripts/generate_poster.py poster.json --output poster.pptx
43
- ```
44
-
45
- ## 3. PPTX package security
46
-
47
- - [ ] ZIP member names have no traversal, absolute paths, symlinks, duplicates,
48
- encryption, oversized entries, or excessive expansion ratios.
49
- - [ ] The package has the standard macro-free PresentationML content type.
50
- - [ ] The package matches the strict generated one-slide part profile.
51
- - [ ] No VBA, ActiveX, OLE, embedded package, executable/binary payload, external
52
- link part, or custom UI is present.
53
- - [ ] No relationship has `TargetMode="External"`.
54
- - [ ] No remotely linked image is present.
55
- - [ ] Internal relationship targets resolve to existing package parts.
56
- - [ ] The presentation was inspected as ZIP/XML and was not opened or executed by
57
- the inspection script.
58
-
59
- Run:
60
-
61
- ```bash
62
- python -B scripts/inspect_pptx.py poster.pptx
63
- ```
64
-
65
- Treat any package finding as a release blocker. Do not "fix" an untrusted package
66
- by opening it in PowerPoint.
67
-
68
- ## 4. Dimensions, scale, bleed, and margins
69
-
70
- - [ ] PowerPoint canvas width and height are each in the current 1–56 inch range.
71
- - [ ] Final physical trim dimensions are recorded separately from canvas dimensions.
72
- - [ ] Final artboard dimensions include twice the confirmed bleed on each axis.
73
- - [ ] Canvas and final artboard have the same aspect ratio.
74
- - [ ] Uniform print scale is explicit; no nonuniform stretching is allowed.
75
- - [ ] Printer permission is recorded if final output is scaled from the PPTX canvas.
76
- - [ ] All non-bleed content stays inside the confirmed safe margin from the trim edge.
77
- - [ ] Full-bleed imagery reaches the artboard edge and does not move text into bleed.
78
- - [ ] A physical or contract proof confirms trim and bleed behavior.
79
-
80
- Run:
81
-
82
- ```bash
83
- python -B scripts/plan_export.py poster.json
84
- ```
85
-
86
- ## 5. Layout and typography
87
-
88
- - [ ] No shape is out of bounds.
89
- - [ ] Every reported bounding-box overlap is either removed or documented as
90
- intentional after visual inspection.
91
- - [ ] No text box visibly overflows, clips, wraps unexpectedly, or uses silent
92
- auto-shrink.
93
- - [ ] Font sizes were assessed at final physical output, not only on the PPTX canvas.
94
- - [ ] The manifest labels its minimum-font value as a project heuristic or ties it
95
- to an exact organizer/printer/source requirement.
96
- - [ ] Required fonts are available on the export workstation and printer workflow.
97
- - [ ] Font embedding rights and the chosen embed/not-embed workflow were reviewed;
98
- the generator itself did not embed fonts.
99
- - [ ] Font substitution, equations, symbols, and scientific glyphs were checked.
100
- - [ ] Visual hierarchy and reading path remain clear at reduced-scale proof size.
101
-
102
- Run:
103
-
104
- ```bash
105
- python -B scripts/check_layout.py poster.pptx --manifest poster.json
106
- ```
107
-
108
- The checker cannot determine rendered overflow or font substitution; inspect those
109
- in PowerPoint and in the exported PDF.
110
-
111
- ## 6. Raster images and assets
112
-
113
- - [ ] Effective DPI is calculated from pixel dimensions divided by final placed
114
- inches, not from file metadata.
115
- - [ ] Every placement meets the manifest's source-labeled or heuristic DPI threshold.
116
- - [ ] No image is stretched out of aspect ratio.
117
- - [ ] The final PDF and printer proof show no resampling artifacts.
118
- - [ ] Asset IDs, hashes, source IDs, provenance, permissions/licenses, and alt text are
119
- in the inventory.
120
- - [ ] EXIF, XMP, comments, and embedded text/application metadata were stripped in
121
- an author-reviewed offline workflow before hashing and approval.
122
- - [ ] Logos and images are authorized for this use.
123
-
124
- Run:
125
-
126
- ```bash
127
- python -B scripts/inventory_images.py poster.json \
128
- --output poster.assets.json
129
- ```
130
-
131
- ## 7. Color and graphical accessibility
132
-
133
- - [ ] Normal text pairs meet WCAG 2.2 SC 1.4.3 at 4.5:1.
134
- - [ ] Large text pairs meet 3:1 only when final text is at least 18 pt, or at least
135
- 14 pt and bold.
136
- - [ ] Essential graphical objects meet the 3:1 non-text contrast screen where
137
- WCAG 2.2 SC 1.4.11 is being used as the design target.
138
- - [ ] Information is never encoded by color alone.
139
- - [ ] Categories also use direct labels, shapes, markers, patterns, or line styles.
140
- - [ ] Palette selection is appropriate to data type: qualitative, sequential, or
141
- diverging.
142
- - [ ] A grayscale/color-vision simulation is reviewed as a screen, not treated as
143
- proof of accessibility.
144
- - [ ] A color proof confirms the printer's conversion and substrate behavior.
145
-
146
- Run:
147
-
148
- ```bash
149
- python -B scripts/check_palette.py poster.json
150
- ```
151
-
152
- ## 8. PowerPoint accessibility
153
-
154
- - [ ] Every picture has concise, accurate alt text that conveys purpose.
155
- - [ ] Complex figures have an approved source-bound native long description when alt
156
- text and adjacent prose are insufficient.
157
- - [ ] Important text is native text, not only pixels inside an image.
158
- - [ ] The visible title is the native slide-title placeholder and text language is
159
- correct.
160
- - [ ] The Reading Order pane matches the intended logical sequence.
161
- - [ ] The PowerPoint Accessibility Checker has no unresolved errors.
162
- - [ ] A keyboard and screen-reader pass confirms the actual reading order.
163
- - [ ] Text links have meaningful visible labels.
164
- - [ ] Every QR code has the exact destination URL in visible fallback text.
165
- - [ ] Each final printed QR code was tested with multiple devices.
166
- - [ ] Language, author names, acronyms, captions, and table alternatives are correct.
167
-
168
- Automated XML inspection cannot certify these manual checks.
169
-
170
- ## 9. Export and print
171
-
172
- - [ ] Export uses PowerPoint's Standard/high print quality, not Minimum size.
173
- - [ ] No audio, video, linked media, OLE, ActiveX, embedded file, or external
174
- relationship was introduced after generation.
175
- - [ ] Exported PDF page size equals the final artboard expected by the printer.
176
- - [ ] Exported PDF is checked independently for tags, reading order, alt text,
177
- links, fonts, clipping, image quality, and page dimensions.
178
- - [ ] RGB is distinguished from any printer-required CMYK conversion.
179
- - [ ] If CMYK is required, the printer-approved conversion/profile and proof are
180
- complete; the native PowerPoint export is not represented as CMYK-compliant.
181
- - [ ] Conference file format, naming, file-size, and submission rules are met.
182
- - [ ] Printer deadline, substrate, mounting, delivery, and backup requirements are met.
183
-
184
- ## 10. Final sign-off
185
-
186
- - [ ] Presenting/corresponding author approved all scientific content and citations.
187
- - [ ] Accessibility reviewer completed manual checks.
188
- - [ ] Printer or production contact approved dimensions, bleed, scale, and color.
189
- - [ ] The exact approved manifest, PPTX hash, asset inventory, audit reports, exported
190
- PDF, and proof are retained together.
191
- - [ ] A final change triggers a new content hash, new author approval, regeneration,
192
- re-export, and all checks again.
@@ -1,297 +0,0 @@
1
- # Poster manifest 2.0
2
-
3
- ## Purpose
4
-
5
- The manifest is the only content input to the generator. It binds:
6
-
7
- - approved text and images;
8
- - exact source IDs;
9
- - local asset hashes and licenses;
10
- - PowerPoint canvas and physical output geometry;
11
- - conference and printer rules;
12
- - accessibility/quality thresholds and their basis;
13
- - reading order;
14
- - author approval to a canonical content hash.
15
-
16
- Unknown keys, duplicate JSON keys, non-finite numbers, remote asset paths, path escape,
17
- unapproved fields, unresolved sources, unused records, and common placeholders are
18
- rejected.
19
-
20
- ## Template
21
-
22
- `assets/poster_manifest_template.json` is intentionally invalid. It contains
23
- replacement tokens, false confirmations, and draft approval so it cannot produce a
24
- poster accidentally.
25
-
26
- Copy it into a project directory, then replace every field with reviewed values.
27
- Asset paths are relative to that manifest's directory.
28
-
29
- ## Top-level object
30
-
31
- Manifest version 2.0 requires exactly these keys:
32
-
33
- - `schema_version`
34
- - `document`
35
- - `canvas`
36
- - `physical_output`
37
- - `requirements`
38
- - `quality`
39
- - `palette`
40
- - `sources`
41
- - `assets`
42
- - `elements`
43
- - `approval`
44
-
45
- The validator rejects extensions to the schema rather than silently ignoring them.
46
-
47
- ## `document`
48
-
49
- - `id`: stable identifier beginning with a letter.
50
- - `title`: exact approved title.
51
- - `subject`: exact approved description for core document metadata.
52
- - `language`: BCP 47-style language tag.
53
- - `authors`: exact ordered author names.
54
- - `source_ids`: exact records supporting title, subject, language, and author metadata.
55
-
56
- Exactly one text element with role `title` must match `document.title` verbatim.
57
- It must have `reading_order: 1`; generation uses it as the native PowerPoint slide
58
- title placeholder rather than as an undifferentiated text box.
59
-
60
- ## `canvas`
61
-
62
- - `width_in`, `height_in`: PowerPoint slide dimensions, each 1–56 inches.
63
- - `background_color`: opaque six-digit sRGB hex.
64
-
65
- These are design dimensions, not automatically the physical trim size.
66
-
67
- ## `physical_output`
68
-
69
- - `trim_width_in`, `trim_height_in`: finished physical dimensions.
70
- - `bleed_in`: physical bleed on each edge.
71
- - `safe_margin_in`: inset inside the trim edge for non-bleed content.
72
- - `orientation`: `portrait`, `landscape`, or `square`, matching trim dimensions.
73
-
74
- The physical artboard is trim plus twice the bleed. It must share the canvas aspect
75
- ratio.
76
-
77
- ## `requirements`
78
-
79
- ### `conference`
80
-
81
- The organizer record must be confirmed and provide:
82
-
83
- - exact `source_id`;
84
- - maximum width and height;
85
- - orientation (`portrait`, `landscape`, `square`, or `either`);
86
- - required delivery format (`PDF`, `PPTX`, `PDF_AND_PPTX`, or `OTHER`);
87
- - notes copied or summarized from the verified rule.
88
-
89
- The physical trim dimensions must fit.
90
- The referenced source record must have kind `conference_rule`.
91
-
92
- ### `printer`
93
-
94
- The printer record must be confirmed and provide:
95
-
96
- - exact `source_id`;
97
- - trim width/height, bleed, and safe margin matching `physical_output`;
98
- - accepted color mode (`RGB`, `CMYK`, or `PRINTER_MANAGED`);
99
- - whether uniform scaling is allowed;
100
- - notes describing the confirmed workflow.
101
-
102
- If scaling is forbidden, canvas and physical artboard must be 1:1. A CMYK requirement
103
- does not prevent creation of an editable RGB PPTX, but the export plan blocks a claim
104
- of print readiness pending printer-approved conversion/proof.
105
- The referenced source record must have kind `printer_rule`.
106
-
107
- ## `quality`
108
-
109
- - `minimum_font_pt_final`
110
- - `font_guidance_basis`
111
- - `font_guidance_source_id`
112
- - `minimum_raster_dpi_final`
113
- - `raster_dpi_basis`
114
- - `raster_dpi_source_id`
115
-
116
- Basis values are:
117
-
118
- - `heuristic`
119
- - `source_specific`
120
- - `conference_requirement`
121
- - `printer_requirement`
122
-
123
- A heuristic must have a null source ID. Every other basis requires an exact source
124
- ID. Values apply at final physical output, after uniform scaling.
125
-
126
- ## `palette`
127
-
128
- `colors` maps stable IDs to opaque `#RRGGBB` sRGB values.
129
-
130
- Each `contrast_pairs` record contains:
131
-
132
- - `id`
133
- - `foreground_color_id`
134
- - `background_color_id`
135
- - `usage`: `normal_text`, `large_text`, or `non_text`
136
-
137
- The validator applies 4.5:1 to normal text and 3:1 to large text/non-text. A text
138
- element using `large_text` must be at least 18 pt final, or at least 14 pt final and
139
- bold.
140
-
141
- `data_series_redundant_encoding` must be true. This is an author confirmation that
142
- color is supplemented by labels, shapes, markers, patterns, or line styles. It is not
143
- an automated certification.
144
-
145
- ## `sources`
146
-
147
- Each source has:
148
-
149
- - `id`
150
- - `kind`
151
- - `citation`
152
- - `locator`
153
- - `author_verified: true`
154
-
155
- Kinds include author content, publication, dataset, asset license, conference rule,
156
- printer rule, institutional rule, and other.
157
-
158
- Every source must be used, and every referenced ID must exist. The scripts do not
159
- resolve URLs, DOIs, or local records.
160
-
161
- ## `assets`
162
-
163
- The array may be empty: figures, logos, and QR codes are optional. Only local
164
- PNG/JPEG assets are accepted when an asset is present. Each record has:
165
-
166
- - `id`
167
- - manifest-relative `path`
168
- - `role`: `figure`, `logo`, or `qr_code`
169
- - lowercase SHA-256
170
- - exact `source_id`
171
- - `license`: exact license or permission statement
172
- - `provenance`: exact author-verified origin or generation record
173
- - concise `alt_text`
174
- - `author_approved: true`
175
- - `qr_target`
176
-
177
- `qr_target` is null except for QR assets, where it is an exact `https://` URL. Files
178
- are bounded, final symlinks are rejected, paths cannot escape the manifest directory,
179
- and hashes must match.
180
-
181
- All asset records must be placed in the poster.
182
- Use one asset record for repeated placement of the same file; duplicate asset paths
183
- are rejected.
184
-
185
- The image inventory rejects EXIF, XMP, comments, and embedded text/application
186
- metadata to avoid publishing hidden or location-identifying information. Flatten and
187
- strip such metadata in an author-reviewed offline workflow, then hash and approve the
188
- resulting pixels as a new asset. ICC profiles and basic technical image fields are
189
- reported but not silently removed.
190
-
191
- ## `elements`
192
-
193
- Elements are listed in ascending, contiguous `reading_order` from 1. The list order is
194
- not silently changed.
195
-
196
- Every element has:
197
-
198
- - `id`, `type`, and `reading_order`
199
- - design coordinates `x_in`, `y_in`, `width_in`, `height_in`
200
- - one or more exact `source_ids`
201
- - `author_approved: true`
202
- - `allow_in_bleed`
203
-
204
- All boxes must stay on the canvas. Non-bleed elements must remain inside the physical
205
- safe area mapped to the canvas. Text can never be allowed in bleed.
206
-
207
- ### Text elements
208
-
209
- Text elements also specify:
210
-
211
- - `role`
212
- - exact `text`
213
- - `font_size_pt_design`
214
- - `font_face`
215
- - `bold`
216
- - horizontal and vertical alignment
217
- - `contrast_pair_id`
218
- - optional `line_color_id`
219
- - `line_width_pt`
220
- - `margin_in`
221
-
222
- Roles include title, authors, affiliation, heading, body, caption, reference,
223
- acknowledgement, contact, QR fallback, and other.
224
-
225
- Font size is checked after physical scaling. Text auto-shrink is disabled during
226
- generation.
227
-
228
- ### Image elements
229
-
230
- Image elements also specify:
231
-
232
- - `asset_id`
233
- - `fit: "contain"`
234
- - `fallback_text_element_id`
235
- - `long_description_element_id`
236
-
237
- Contain fitting preserves aspect ratio and centers the image. A QR asset requires a
238
- square box and a fallback text element whose role is `qr_fallback` and whose text
239
- contains the exact `qr_target`. Other assets use null fallback IDs.
240
-
241
- `long_description_element_id` is null when approved alt text and adjacent native text
242
- are sufficient. For a complex figure that needs a longer explanation, it references
243
- an approved native text element with role `body`, `caption`, or `other`. That element
244
- must follow the image in reading order and include every source ID used by the image.
245
- QR assets use the required visible fallback text and therefore set this field to null.
246
- The reference is structural; a human must decide whether the description is complete.
247
-
248
- ## Approval
249
-
250
- Draft form:
251
-
252
- ```json
253
- {
254
- "status": "draft",
255
- "approved_by": null,
256
- "approved_at": null,
257
- "content_sha256": null
258
- }
259
- ```
260
-
261
- After all non-approval fields validate:
262
-
263
- ```bash
264
- python -B scripts/validate_manifest.py poster.json \
265
- --print-content-hash
266
- ```
267
-
268
- Give the exact manifest and reported hash to the author. Approved form requires:
269
-
270
- - `status: "approved"`
271
- - nonempty `approved_by`
272
- - ISO 8601 `approved_at` with UTC offset
273
- - exact lowercase `content_sha256`
274
-
275
- The hash covers every top-level field except `approval`, using canonical sorted
276
- UTF-8 JSON. Any content, source, requirement, palette, coordinate, or asset-metadata
277
- change invalidates approval.
278
-
279
- ## Validation modes and exit codes
280
-
281
- Normal validation reads and hashes assets and requires approval:
282
-
283
- ```bash
284
- python -B scripts/validate_manifest.py poster.json
285
- ```
286
-
287
- `--structure-only` skips file reads/hashes but still validates path syntax. Use it for
288
- planning/audit only, never generation.
289
-
290
- `--print-content-hash` permits draft approval but does not permit placeholders,
291
- unverified sources, unapproved elements, or false requirements.
292
-
293
- CLIs use:
294
-
295
- - exit 0: pass;
296
- - exit 1: completed audit found a release-blocking issue;
297
- - exit 2: invalid input, unsafe input, missing dependency, or command error.