@pikaa-ai/pikaa 0.3.1 → 0.3.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1870) hide show
  1. package/dist/cli.js +1169 -601
  2. package/dist/index.js +525 -204
  3. package/package.json +5 -3
  4. package/skills/adaptyv/references/api-endpoints.md +0 -690
  5. package/skills/aeon/references/anomaly_detection.md +0 -154
  6. package/skills/aeon/references/classification.md +0 -144
  7. package/skills/aeon/references/clustering.md +0 -123
  8. package/skills/aeon/references/datasets_benchmarking.md +0 -392
  9. package/skills/aeon/references/distances.md +0 -256
  10. package/skills/aeon/references/forecasting.md +0 -109
  11. package/skills/aeon/references/networks.md +0 -289
  12. package/skills/aeon/references/regression.md +0 -118
  13. package/skills/aeon/references/segmentation.md +0 -163
  14. package/skills/aeon/references/similarity_search.md +0 -187
  15. package/skills/aeon/references/transformations.md +0 -246
  16. package/skills/analytical-method-validation/assets/validation-protocol-template.md +0 -106
  17. package/skills/analytical-method-validation/assets/validation-report-template.md +0 -116
  18. package/skills/analytical-method-validation/references/compendial-and-clsi.md +0 -96
  19. package/skills/analytical-method-validation/references/framework-selection.md +0 -87
  20. package/skills/analytical-method-validation/references/ich-m10-bioanalytical.md +0 -123
  21. package/skills/analytical-method-validation/references/ich-q2r2.md +0 -229
  22. package/skills/analytical-method-validation/references/source-ledger.md +0 -125
  23. package/skills/analytical-method-validation/references/statistics.md +0 -209
  24. package/skills/analytical-method-validation/scripts/_catalog.py +0 -499
  25. package/skills/analytical-method-validation/scripts/_common.py +0 -955
  26. package/skills/analytical-method-validation/scripts/check_accuracy_precision.py +0 -328
  27. package/skills/analytical-method-validation/scripts/check_bioanalytical_run.py +0 -293
  28. package/skills/analytical-method-validation/scripts/check_detection_limits.py +0 -310
  29. package/skills/analytical-method-validation/scripts/check_response.py +0 -243
  30. package/skills/analytical-method-validation/scripts/compare_methods.py +0 -215
  31. package/skills/analytical-method-validation/scripts/plan_validation.py +0 -381
  32. package/skills/anndata/references/best_practices.md +0 -532
  33. package/skills/anndata/references/concatenation.md +0 -399
  34. package/skills/anndata/references/data_structure.md +0 -314
  35. package/skills/anndata/references/io_operations.md +0 -466
  36. package/skills/anndata/references/manipulation.md +0 -516
  37. package/skills/arbor/references/arbor-upstream.md +0 -91
  38. package/skills/arbor/references/executor-brief.md +0 -68
  39. package/skills/arbor/references/htr-methodology.md +0 -177
  40. package/skills/arbor/references/report-template.md +0 -39
  41. package/skills/arbor/scripts/tree.py +0 -564
  42. package/skills/arboreto/references/algorithms.md +0 -152
  43. package/skills/arboreto/references/basic_inference.md +0 -181
  44. package/skills/arboreto/references/distributed_computing.md +0 -242
  45. package/skills/arboreto/scripts/basic_grn_inference.py +0 -107
  46. package/skills/astropy/references/coordinates.md +0 -280
  47. package/skills/astropy/references/cosmology.md +0 -309
  48. package/skills/astropy/references/fits.md +0 -398
  49. package/skills/astropy/references/tables.md +0 -495
  50. package/skills/astropy/references/time.md +0 -412
  51. package/skills/astropy/references/units.md +0 -178
  52. package/skills/astropy/references/wcs_and_other_modules.md +0 -377
  53. package/skills/autoskill/config.yaml +0 -53
  54. package/skills/autoskill/references/https-proxy.md +0 -62
  55. package/skills/autoskill/references/screenpipe-config.yaml +0 -61
  56. package/skills/autoskill/scripts/autoskill.py +0 -35
  57. package/skills/autoskill/scripts/backends.py +0 -116
  58. package/skills/autoskill/scripts/cluster.py +0 -54
  59. package/skills/autoskill/scripts/doctor.py +0 -108
  60. package/skills/autoskill/scripts/fetch_window.py +0 -33
  61. package/skills/autoskill/scripts/match_skills.py +0 -46
  62. package/skills/autoskill/scripts/promote.py +0 -58
  63. package/skills/autoskill/scripts/redact.py +0 -40
  64. package/skills/autoskill/scripts/run.py +0 -194
  65. package/skills/autoskill/scripts/synthesize.py +0 -72
  66. package/skills/benchling-integration/references/api_endpoints.md +0 -883
  67. package/skills/benchling-integration/references/authentication.md +0 -390
  68. package/skills/benchling-integration/references/core_capabilities.md +0 -355
  69. package/skills/benchling-integration/references/eventbridge.md +0 -255
  70. package/skills/benchling-integration/references/sdk_reference.md +0 -772
  71. package/skills/bids/references/beps.yml +0 -637
  72. package/skills/bids/references/bids_schema.json +0 -21015
  73. package/skills/bids/references/bids_specification.md +0 -165
  74. package/skills/bids/references/conversion_tools.md +0 -475
  75. package/skills/bids/references/core_workflows.md +0 -552
  76. package/skills/bids/references/metadata_fields.md +0 -365
  77. package/skills/bids/scripts/update_schema.py +0 -89
  78. package/skills/biopython/references/advanced.md +0 -580
  79. package/skills/biopython/references/alignment.md +0 -377
  80. package/skills/biopython/references/blast.md +0 -463
  81. package/skills/biopython/references/databases.md +0 -492
  82. package/skills/biopython/references/phylogenetics.md +0 -566
  83. package/skills/biopython/references/sequence_io.md +0 -289
  84. package/skills/biopython/references/structure.md +0 -564
  85. package/skills/bioservices/references/identifier_mapping.md +0 -685
  86. package/skills/bioservices/references/services_reference.md +0 -638
  87. package/skills/bioservices/references/workflow_patterns.md +0 -813
  88. package/skills/bioservices/scripts/batch_id_converter.py +0 -347
  89. package/skills/bioservices/scripts/compound_cross_reference.py +0 -387
  90. package/skills/bioservices/scripts/pathway_analysis.py +0 -309
  91. package/skills/bioservices/scripts/protein_analysis_workflow.py +0 -441
  92. package/skills/bulk-rnaseq/references/counts-and-handoff.md +0 -91
  93. package/skills/bulk-rnaseq/references/design-and-qc.md +0 -68
  94. package/skills/bulk-rnaseq/references/upstream-manual.md +0 -128
  95. package/skills/bulk-rnaseq/references/upstream-nfcore.md +0 -108
  96. package/skills/bulk-rnaseq/scripts/build_counts_matrix.py +0 -203
  97. package/skills/bulk-rnaseq/scripts/validate_samplesheet.py +0 -206
  98. package/skills/cellxgene-census/references/census_schema.md +0 -218
  99. package/skills/cellxgene-census/references/common_patterns.md +0 -368
  100. package/skills/cellxgene-census/references/core_workflow_patterns.md +0 -297
  101. package/skills/cirq/references/building.md +0 -307
  102. package/skills/cirq/references/experiments.md +0 -572
  103. package/skills/cirq/references/hardware.md +0 -527
  104. package/skills/cirq/references/noise.md +0 -514
  105. package/skills/cirq/references/simulation.md +0 -353
  106. package/skills/cirq/references/transformation.md +0 -416
  107. package/skills/citation-management/assets/bibtex_template.bib +0 -264
  108. package/skills/citation-management/assets/citation_checklist.md +0 -386
  109. package/skills/citation-management/references/best_practices.md +0 -91
  110. package/skills/citation-management/references/bibtex_formatting.md +0 -908
  111. package/skills/citation-management/references/citation_validation.md +0 -835
  112. package/skills/citation-management/references/core_workflow.md +0 -569
  113. package/skills/citation-management/references/example_workflows.md +0 -126
  114. package/skills/citation-management/references/google_scholar_search.md +0 -732
  115. package/skills/citation-management/references/metadata_extraction.md +0 -870
  116. package/skills/citation-management/references/pubmed_search.md +0 -839
  117. package/skills/citation-management/references/script_reference.md +0 -250
  118. package/skills/citation-management/references/search_strategies.md +0 -110
  119. package/skills/citation-management/scripts/_common.py +0 -331
  120. package/skills/citation-management/scripts/doi_to_bibtex.py +0 -204
  121. package/skills/citation-management/scripts/extract_metadata.py +0 -690
  122. package/skills/citation-management/scripts/format_bibtex.py +0 -356
  123. package/skills/citation-management/scripts/search_google_scholar.py +0 -268
  124. package/skills/citation-management/scripts/search_openalex.py +0 -297
  125. package/skills/citation-management/scripts/search_pubmed.py +0 -419
  126. package/skills/citation-management/scripts/validate_citations.py +0 -688
  127. package/skills/clinical-decision-support/assets/aggregate_cohort_table_template.json +0 -114
  128. package/skills/clinical-decision-support/assets/aggregate_model_evaluation_template.json +0 -115
  129. package/skills/clinical-decision-support/assets/artifact_intended_use_template.json +0 -81
  130. package/skills/clinical-decision-support/assets/decision_logic_traceability_template.json +0 -108
  131. package/skills/clinical-decision-support/assets/deidentification_checklist_template.json +0 -176
  132. package/skills/clinical-decision-support/assets/evidence_profile_template.json +0 -139
  133. package/skills/clinical-decision-support/assets/survival_analysis_plan_template.json +0 -134
  134. package/skills/clinical-decision-support/references/cohort_evaluation.md +0 -142
  135. package/skills/clinical-decision-support/references/decision_logic_traceability.md +0 -146
  136. package/skills/clinical-decision-support/references/evidence_profiles.md +0 -153
  137. package/skills/clinical-decision-support/references/model_biomarker_evaluation.md +0 -152
  138. package/skills/clinical-decision-support/references/privacy_and_disclosure.md +0 -144
  139. package/skills/clinical-decision-support/references/regulatory_and_governance.md +0 -104
  140. package/skills/clinical-decision-support/references/safety_and_scope.md +0 -103
  141. package/skills/clinical-decision-support/references/security_validation.md +0 -60
  142. package/skills/clinical-decision-support/references/sources.md +0 -119
  143. package/skills/clinical-decision-support/references/study_reporting.md +0 -134
  144. package/skills/clinical-decision-support/references/survival_analysis.md +0 -156
  145. package/skills/clinical-decision-support/scripts/_common.py +0 -223
  146. package/skills/clinical-decision-support/scripts/cohort_table_generator.py +0 -288
  147. package/skills/clinical-decision-support/scripts/decision_logic_traceability.py +0 -313
  148. package/skills/clinical-decision-support/scripts/deidentification_checklist.py +0 -260
  149. package/skills/clinical-decision-support/scripts/evidence_profile_check.py +0 -259
  150. package/skills/clinical-decision-support/scripts/model_biomarker_evaluation.py +0 -345
  151. package/skills/clinical-decision-support/scripts/survival_plan_validator.py +0 -294
  152. package/skills/clinical-decision-support/scripts/validate_cds_artifact.py +0 -269
  153. package/skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv +0 -1
  154. package/skills/clinical-reports/assets/case_report_template.json +0 -43
  155. package/skills/clinical-reports/assets/clinical_trial_csr_template.json +0 -51
  156. package/skills/clinical-reports/assets/clinical_trial_results_template.json +0 -66
  157. package/skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json +0 -49
  158. package/skills/clinical-reports/assets/consistency_manifest_template.json +0 -15
  159. package/skills/clinical-reports/assets/deidentification_process_checklist.json +0 -56
  160. package/skills/clinical-reports/assets/lab_report_template.json +0 -36
  161. package/skills/clinical-reports/assets/pathology_report_template.json +0 -36
  162. package/skills/clinical-reports/assets/provenance_manifest_template.json +0 -17
  163. package/skills/clinical-reports/assets/quality_review_checklist.json +0 -34
  164. package/skills/clinical-reports/assets/radiology_report_template.json +0 -34
  165. package/skills/clinical-reports/assets/research_summary_template.json +0 -36
  166. package/skills/clinical-reports/assets/terminology_manifest_template.json +0 -11
  167. package/skills/clinical-reports/assets/trial_protocol_reporting_checklist.json +0 -70
  168. package/skills/clinical-reports/references/case_report_guidelines.md +0 -72
  169. package/skills/clinical-reports/references/clinical_trial_reporting.md +0 -97
  170. package/skills/clinical-reports/references/data_presentation.md +0 -92
  171. package/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -76
  172. package/skills/clinical-reports/references/medical_terminology.md +0 -84
  173. package/skills/clinical-reports/references/privacy_and_deidentification.md +0 -84
  174. package/skills/clinical-reports/references/professional_review.md +0 -78
  175. package/skills/clinical-reports/references/report_type_routing.md +0 -57
  176. package/skills/clinical-reports/references/safety_reporting.md +0 -109
  177. package/skills/clinical-reports/references/sources.md +0 -75
  178. package/skills/clinical-reports/scripts/_common.py +0 -263
  179. package/skills/clinical-reports/scripts/check_deidentification.py +0 -298
  180. package/skills/clinical-reports/scripts/consistency_checker.py +0 -390
  181. package/skills/clinical-reports/scripts/format_adverse_events.py +0 -455
  182. package/skills/clinical-reports/scripts/generate_report_template.py +0 -115
  183. package/skills/clinical-reports/scripts/provenance_validator.py +0 -263
  184. package/skills/clinical-reports/scripts/terminology_validator.py +0 -277
  185. package/skills/clinical-reports/scripts/validate_case_report.py +0 -278
  186. package/skills/clinical-reports/scripts/validate_trial_report.py +0 -534
  187. package/skills/cobrapy/references/api_quick_reference.md +0 -665
  188. package/skills/cobrapy/references/workflows.md +0 -600
  189. package/skills/consciousness-council/references/advanced-configurations.md +0 -96
  190. package/skills/dask/references/arrays.md +0 -495
  191. package/skills/dask/references/bags.md +0 -468
  192. package/skills/dask/references/best-practices.md +0 -277
  193. package/skills/dask/references/dataframes.md +0 -370
  194. package/skills/dask/references/futures.md +0 -541
  195. package/skills/dask/references/schedulers.md +0 -517
  196. package/skills/database-lookup/references/addgene.md +0 -38
  197. package/skills/database-lookup/references/alphafold.md +0 -52
  198. package/skills/database-lookup/references/alphavantage.md +0 -261
  199. package/skills/database-lookup/references/bea.md +0 -409
  200. package/skills/database-lookup/references/bindingdb.md +0 -85
  201. package/skills/database-lookup/references/biogrid.md +0 -110
  202. package/skills/database-lookup/references/bls.md +0 -235
  203. package/skills/database-lookup/references/brenda.md +0 -71
  204. package/skills/database-lookup/references/cbioportal.md +0 -206
  205. package/skills/database-lookup/references/census.md +0 -251
  206. package/skills/database-lookup/references/chebi.md +0 -103
  207. package/skills/database-lookup/references/chembl.md +0 -80
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  210. package/skills/database-lookup/references/clinvar.md +0 -91
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  212. package/skills/database-lookup/references/cosmic.md +0 -59
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  218. package/skills/database-lookup/references/drugbank.md +0 -54
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  229. package/skills/database-lookup/references/gene-ontology.md +0 -147
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  236. package/skills/database-lookup/references/human-protein-atlas.md +0 -57
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- # DARPA (Defense Advanced Research Projects Agency) Grant Writing Guidelines
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-
3
- ## Agency Overview
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-
5
- **Mission**: Make pivotal investments in breakthrough technologies for national security
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-
7
- **Tagline**: "Creating breakthrough technologies and capabilities for national security"
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-
9
- **Annual Budget**: ~$4 billion
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-
11
- **Website**: https://www.darpa.mil
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-
13
- **Key Characteristics**:
14
- - High-risk, high-reward research
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- - Focused on revolutionary breakthroughs, not incremental advances
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- - Technology transition to military and commercial applications
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- - Program managers with broad autonomy
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- - ~3-5 year programs with defined end goals
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- - Strong emphasis on prototypes and demonstrations
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- - "DARPA-hard" problems that others won't or can't tackle
21
-
22
- **The DARPA Difference**:
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- - NOT basic research (that's ONR, AFOSR, ARO)
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- - NOT development and procurement (that's service acquisition)
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- - Focused on proof-of-concept to prototype stage
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- - Tolerates and expects failure in pursuit of breakthroughs
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- - Rapid transition to operational use
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-
29
- ## DARPA Organization
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-
31
- ### Six Technical Offices
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-
33
- #### 1. BTO (Biological Technologies Office)
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- **Focus**: Biology as technology, human-machine interfaces, synthetic biology
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-
36
- **Example Programs**:
37
- - Neural interfaces and brain-computer interfaces
38
- - Synthetic biology and living foundries
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- - Pandemic prevention and response
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- - Human performance enhancement
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- - Biotechnology for manufacturing
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-
43
- #### 2. DSO (Defense Sciences Office)
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- **Focus**: High-risk, high-payoff research in physical and mathematical sciences
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-
46
- **Example Programs**:
47
- - Novel materials and chemistry
48
- - Quantum technologies
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- - Electromagnetics and photonics
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- - Mathematics and algorithms
51
- - Fundamental limits of physics
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-
53
- #### 3. I2O (Information Innovation Office)
54
- **Focus**: Information advantage through computing, communications, and cyber
55
-
56
- **Example Programs**:
57
- - Artificial intelligence and machine learning
58
- - Cybersecurity and cyber resilience
59
- - Communications and networking
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- - Data analytics and processing
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- - Human-computer interaction
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-
63
- #### 4. MTO (Microsystems Technology Office)
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- **Focus**: Microelectronics, photonics, and heterogeneous microsystems
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-
66
- **Example Programs**:
67
- - Advanced electronics and integrated circuits
68
- - Photonics and optical systems
69
- - Novel computational architectures
70
- - RF and millimeter-wave systems
71
- - MEMS and sensors
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-
73
- #### 5. STO (Strategic Technology Office)
74
- **Focus**: Technologies for space, air, maritime, and ground systems
75
-
76
- **Example Programs**:
77
- - Autonomous systems (air, ground, sea, space)
78
- - Advanced propulsion and power
79
- - Space technologies
80
- - Electronic warfare
81
- - Long-range precision fires
82
-
83
- #### 6. TTO (Tactical Technology Office)
84
- **Focus**: Near-term technologies for ground, maritime, and expeditionary forces
85
-
86
- **Example Programs**:
87
- - Tactical autonomy
88
- - Advanced weapons
89
- - Urban operations
90
- - Maneuver and logistics
91
- - Special operations support
92
-
93
- ## How DARPA Works
94
-
95
- ### Program Manager-Centric Model
96
-
97
- **Program Managers (PMs)**:
98
- - ~100 PMs across DARPA
99
- - Hired on 3-5 year rotations from academia, industry, government labs
100
- - Have significant autonomy to create and run programs
101
- - Identify "DARPA-hard" problems and solutions
102
- - Manage portfolios of 10-20 projects
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-
104
- **PM Lifecycle**:
105
- 1. **Develop vision**: Identify transformative opportunity
106
- 2. **Create program**: Design research thrusts and metrics
107
- 3. **Issue BAA**: Broad Agency Announcement for proposals
108
- 4. **Select teams**: Choose performers and structure program
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- 5. **Manage program**: Track milestones, adjust course, transition technology
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- 6. **Transition**: Hand off successful technologies to services or industry
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-
112
- **Implication for Proposers**:
113
- - PMs have the vision—your job is to execute it
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- - Contact PM before proposing (almost always required)
115
- - Understand PM's technical vision and goals
116
- - Build relationship with PM (within ethical bounds)
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-
118
- ### The "DARPA-Hard" Test
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-
120
- **Three Questions Every DARPA Program Must Answer**:
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-
122
- 1. **What are you trying to do?**
123
- - Articulate objectives using absolutely no jargon
124
- - Clear, specific technical goal
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-
126
- 2. **How is it done today, and what are the limits of current practice?**
127
- - What's the current state of the art?
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- - Why are current approaches insufficient?
129
- - What fundamental barriers exist?
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-
131
- 3. **What is new in your approach, and why do you think it will be successful?**
132
- - What's the breakthrough insight or capability?
133
- - Why hasn't this been done before?
134
- - What's changed to make it possible now?
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-
136
- **Additional Considerations**:
137
- - **Who cares?** (What's the national security impact?)
138
- - **What if you're right?** (What becomes possible?)
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- - **What if you're wrong?** (Is the risk acceptable?)
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- - **What if you succeed?** (Is there a transition path?)
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-
142
- **DARPA Seeks**:
143
- - **High Risk**: 50% chance of failure is acceptable
144
- - **High Reward**: 10x improvement, not 10% improvement
145
- - **Measurable**: Clear metrics of success
146
- - **Transitional**: Path to operational use or commercial adoption
147
-
148
- ## Types of DARPA Solicitations
149
-
150
- ### 1. Broad Agency Announcements (BAAs)
151
-
152
- **Most Common Mechanism**: Open solicitations for specific program areas
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-
154
- **Characteristics**:
155
- - Issued by program managers for specific programs
156
- - Describe technical objectives and research thrusts
157
- - Multiple submission deadlines or rolling submission
158
- - Full proposals typically 20-40 pages
159
- - Often require abstract or white paper first
160
-
161
- **Types of BAAs**:
162
-
163
- **Program BAAs**: For specific named programs
164
- - Clear technical objectives and metrics
165
- - Defined research areas (thrusts)
166
- - Specified deliverables and milestones
167
- - Known PM with clear vision
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-
169
- **Office-Wide BAAs**: General solicitations by technical office
170
- - Broader scope, less prescriptive
171
- - Looking for transformative ideas
172
- - More flexibility in approach
173
- - May have multiple areas of interest
174
-
175
- ### 2. Small Business Innovation Research (SBIR)
176
-
177
- **For Small Businesses**:
178
- - **Phase I**: $150K-$250K, 6-9 months (feasibility)
179
- - **Phase II**: $1M-$2M, 2 years (development)
180
- - **Phase III**: Non-SBIR funds (commercialization)
181
-
182
- ### 3. Proposers Days and Special Notices
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-
184
- **Proposers Day**: Pre-solicitation event
185
- - PM presents program vision and objectives
186
- - Q&A with potential proposers
187
- - Networking for team formation
188
- - Often required or strongly encouraged to attend
189
-
190
- **Special Notices**: Requests for Information (RFIs), teaming opportunities
191
-
192
- ## DARPA Proposal Structure
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-
194
- **Note**: Format varies by BAA. **Always follow the specific BAA instructions precisely.**
195
-
196
- ### Typical Structure
197
-
198
- #### Volume 1: Technical and Management Proposal (20-40 pages)
199
-
200
- **Section 1: Executive Summary** (1-2 pages)
201
- - Overview of proposed research
202
- - Technical approach and innovation
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- - Expected outcomes and deliverables
204
- - Team qualifications
205
- - Alignment with BAA objectives
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-
207
- **Section 2: Goals and Impact** (2-3 pages)
208
- - Statement of the problem
209
- - Importance and national security relevance
210
- - Current state of the art and limitations
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- - How your work will advance the state of the art
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- - Impact if successful (What if true? Who cares?)
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- - Alignment with DARPA program goals
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-
215
- **Section 3: Technical Approach and Innovation** (10-20 pages)
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- - Detailed technical plan organized by phase or thrust
217
- - Novel approaches and why they will work
218
- - Technical risks and mitigation strategies
219
- - Preliminary results or proof-of-concept data
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- - Technical barriers and how to overcome them
221
- - Innovation and differentiation from existing work
222
-
223
- **Organized by Phase** (typical):
224
-
225
- **Phase 1 (Feasibility)**: 12-18 months
226
- - Technical objectives and milestones
227
- - Approach and methodology
228
- - Expected outcomes
229
- - Metrics for success
230
- - Go/no-go criteria for Phase 2
231
-
232
- **Phase 2 (Development)**: 18-24 months
233
- - Building on Phase 1 results
234
- - System integration and optimization
235
- - Testing and validation
236
- - Prototype development
237
- - Metrics and evaluation
238
-
239
- **Phase 3 (Demonstration)**: 12-18 months (if applicable)
240
- - Field testing or operational demonstration
241
- - Transition activities
242
- - Handoff to transition partner
243
-
244
- **Section 4: Capabilities and Resources** (2-3 pages)
245
- - Team qualifications and expertise
246
- - Facilities and equipment
247
- - Relevant prior work and publications
248
- - Subcontractor and collaborator roles
249
- - Organizational structure
250
-
251
- **Section 5: Statement of Work (SOW)** (3-5 pages)
252
- - Detailed task breakdown
253
- - Deliverables for each task
254
- - Milestones and metrics
255
- - Timeline (Gantt chart)
256
- - Dependencies and critical path
257
- - Government furnished property or information (if applicable)
258
-
259
- **Section 6: Schedule and Milestones** (1-2 pages)
260
- - Integrated master schedule
261
- - Key decision points
262
- - Deliverable schedule
263
- - Go/no-go criteria
264
- - Reporting and meeting schedule
265
-
266
- **Section 7: Technology Transition Plan** (2-3 pages)
267
- - Potential transition partners (military services, industry)
268
- - Pathway to operational use or commercialization
269
- - Market or operational analysis
270
- - Transition activities during the program
271
- - IP and licensing strategy (if applicable)
272
-
273
- #### Volume 2: Cost Proposal (separate)
274
-
275
- **Detailed Budget**:
276
- - Costs by phase, task, and year
277
- - Labor (personnel, hours, rates)
278
- - Materials and supplies
279
- - Equipment
280
- - Travel
281
- - Subcontracts
282
- - Other direct costs
283
- - Indirect costs (overhead, G&A)
284
- - Fee or profit (for industry)
285
-
286
- **Cost Narrative**:
287
- - Justification for each cost element
288
- - Labor categories and rates
289
- - Basis of estimate
290
- - Cost realism analysis
291
- - Supporting documentation
292
-
293
- **Supporting Documentation**:
294
- - Cost accounting standards
295
- - Approved indirect rate agreements
296
- - Subcontractor quotes or cost proposals
297
-
298
- #### Additional Volumes (if required)
299
-
300
- **Attachments**:
301
- - Quad charts (1-slide summary)
302
- - Relevant publications or technical papers
303
- - Letters of commitment from collaborators
304
- - Facilities descriptions
305
- - Equipment lists
306
-
307
- ## Review Criteria
308
-
309
- ### DARPA Evaluation Factors (Typical)
310
-
311
- **Primary Criteria** (usually equal weight):
312
-
313
- 1. **Overall Scientific and Technical Merit**
314
- - Technical soundness and feasibility
315
- - Innovation and novelty
316
- - Likelihood of achieving objectives
317
- - Technical approach and methodology
318
- - Understanding of problem and prior art
319
- - Risk and risk mitigation
320
-
321
- 2. **Potential Contribution and Relevance to DARPA Mission**
322
- - Alignment with program objectives
323
- - National security impact
324
- - Advancement over state of the art
325
- - Potential for revolutionary breakthrough
326
- - "What if true? Who cares?" test
327
-
328
- 3. **Cost Realism and Reasonableness**
329
- - Budget aligned with technical plan
330
- - Costs justified and realistic
331
- - Value for investment
332
- - Cost versus benefit analysis
333
-
334
- 4. **Capabilities and Related Experience**
335
- - Team qualifications and track record
336
- - Facilities and resources adequate
337
- - Relevant prior work
338
- - Ability to deliver on time and on budget
339
- - Management approach
340
-
341
- 5. **Technology Transition**
342
- - Pathway to operational use or market
343
- - Transition partnerships
344
- - Market analysis (if applicable)
345
- - Plans for follow-on development
346
- - IP strategy supporting transition
347
-
348
- ### The "Heilmeier Catechism"
349
-
350
- **DARPA uses this set of questions** (created by former DARPA director George Heilmeier):
351
-
352
- 1. What are you trying to do? Articulate your objectives using absolutely no jargon.
353
- 2. How is it done today, and what are the limits of current practice?
354
- 3. What is new in your approach and why do you think it will be successful?
355
- 4. Who cares? If you succeed, what difference will it make?
356
- 5. What are the risks?
357
- 6. How much will it cost?
358
- 7. How long will it take?
359
- 8. What are the mid-term and final "exams" to check for success?
360
-
361
- **Your proposal should clearly answer all eight questions.**
362
-
363
- ## DARPA Proposing Strategy
364
-
365
- ### Before Writing
366
-
367
- **1. Contact the Program Manager**
368
- - Email PM to introduce yourself and idea
369
- - Request call to discuss fit with program
370
- - Attend Proposers Day if available
371
- - Ask clarifying questions about BAA
372
-
373
- **2. Form a Strong Team**
374
- - DARPA values multidisciplinary teams
375
- - Include complementary expertise
376
- - Mix of academia, industry, government labs
377
- - Clearly defined roles
378
- - Prior collaboration history (if possible)
379
-
380
- **3. Understand the Vision**
381
- - What is the PM trying to achieve?
382
- - What technical barriers need to be overcome?
383
- - What does success look like?
384
- - What are the program metrics?
385
-
386
- **4. Identify Transition Path**
387
- - Who will use the technology?
388
- - What's the path from prototype to product?
389
- - Who are potential transition partners?
390
- - What's the market or operational need?
391
-
392
- ### Writing the Proposal
393
-
394
- **Lead with Impact**:
395
- - Open with the "so what?"
396
- - National security or economic impact
397
- - What becomes possible if you succeed?
398
-
399
- **Be Concrete and Specific**:
400
- - Clear technical objectives with metrics
401
- - Measurable milestones
402
- - Quantitative targets (10x improvement, not "better")
403
- - Specific deliverables
404
-
405
- **Demonstrate Innovation**:
406
- - What's the breakthrough?
407
- - Why hasn't this been done before?
408
- - What's changed to make it possible now?
409
- - How is this different from evolutionary approaches?
410
-
411
- **Address Risk Head-On**:
412
- - Identify technical risks explicitly
413
- - Explain mitigation strategies
414
- - Show that you've thought through failure modes
415
- - DARPA expects risk—don't hide it, manage it
416
-
417
- **Show You Can Execute**:
418
- - Detailed project plan with milestones
419
- - Team with relevant track record
420
- - Realistic schedule and budget
421
- - Go/no-go decision points
422
- - Management approach for complex programs
423
-
424
- **Emphasize Transition**:
425
- - Who will use the results?
426
- - Path to operationalization or commercialization
427
- - Engagement with potential users during program
428
- - IP strategy that enables transition
429
-
430
- ### Common Mistakes
431
-
432
- 1. **Incremental Research**: Proposing 10% improvement instead of 10x
433
- 2. **Academic Focus**: Pure research without application focus
434
- 3. **No Transition Plan**: No pathway to use or commercialization
435
- 4. **Ignoring PM Vision**: Not aligned with program objectives
436
- 5. **Vague Metrics**: "Improve" or "enhance" instead of quantitative targets
437
- 6. **Underestimating Risk**: Claiming low risk (DARPA wants high risk, high reward)
438
- 7. **Weak Team**: Insufficient expertise or poorly defined roles
439
- 8. **No Differentiation**: Similar to existing efforts without clear advantage
440
- 9. **Ignoring BAA**: Not following proposal format or requirements
441
- 10. **Late Contact with PM**: Waiting until proposal due date to engage
442
-
443
- ## DARPA Contracting and Performance
444
-
445
- ### Award Types
446
-
447
- **Procurement Contracts**: Most common for industry
448
- - Firm Fixed Price (FFP)
449
- - Cost Plus Fixed Fee (CPFF)
450
- - Cost Plus Incentive Fee (CPIF)
451
-
452
- **Grants and Cooperative Agreements**: For universities and nonprofits
453
- - Grants: Minimal government involvement
454
- - Cooperative Agreements: Substantial government involvement
455
-
456
- **Other Transaction Agreements (OTAs)**: Flexible arrangements
457
- - For research not requiring FAR compliance
458
- - Faster, more flexible terms
459
- - Common for consortia and partnerships
460
-
461
- ### Program Execution
462
-
463
- **Kickoff Meeting**: Program launch with all performers
464
- - PM presents program vision and goals
465
- - Performers present approaches
466
- - Technical exchange and collaboration
467
-
468
- **Quarterly Reviews**: Progress reviews (virtual or in-person)
469
- - Technical progress against milestones
470
- - Challenges and solutions
471
- - Path forward
472
- - PM feedback and course corrections
473
-
474
- **Annual or Phase Reviews**: Major assessment points
475
- - Comprehensive technical review
476
- - Go/no-go decisions
477
- - Budget and schedule adjustments
478
-
479
- **Site Visits**: PM and team visit performer sites
480
- - See technical work firsthand
481
- - Deep dive on specific areas
482
- - Team building and collaboration
483
-
484
- **Technical Interchange Meetings (TIMs)**: Deep dives on technical topics
485
- - Cross-performer collaboration
486
- - Sharing of results and approaches
487
- - Problem-solving sessions
488
-
489
- ### Deliverables and Reporting
490
-
491
- **Monthly Reports**: Brief progress updates
492
- - Technical progress
493
- - Budget status
494
- - Issues and concerns
495
-
496
- **Quarterly Reports**: Detailed technical reporting
497
- - Accomplishments against milestones
498
- - Data and results
499
- - Upcoming activities
500
- - Publications and IP
501
-
502
- **Final Report**: Comprehensive program summary
503
- - Technical achievements
504
- - Lessons learned
505
- - Transition activities
506
- - Future directions
507
-
508
- **Technical Data and Prototypes**: Specified in contract
509
- - Software and code
510
- - Hardware prototypes
511
- - Data sets
512
- - Documentation
513
-
514
- ## DARPA Culture and Expectations
515
-
516
- ### High Risk is Expected
517
-
518
- - DARPA programs should have ~50% probability of failure
519
- - Failure is acceptable if lessons are learned
520
- - "Fail fast" to redirect resources
521
- - Transparency about challenges valued
522
-
523
- ### Rapid Pivots
524
-
525
- - PM may redirect program based on results
526
- - Flexibility to pursue unexpected opportunities
527
- - Willingness to stop unproductive efforts
528
- - Adaptability is key
529
-
530
- ### Transition Focus
531
-
532
- - Technology must have a path to use
533
- - Engagement with transition partners during program
534
- - Demonstrate prototypes and capabilities
535
- - Handoff to services or industry
536
-
537
- ### Collaboration and Teaming
538
-
539
- - Performers expected to collaborate
540
- - Share results and insights (within IP bounds)
541
- - Attend all program meetings
542
- - Support overall program goals, not just own project
543
-
544
- ## Recent DARPA Priorities and Programs
545
-
546
- ### Key Technology Areas (2024-2025)
547
-
548
- **Artificial Intelligence and Autonomy**:
549
- - Trustworthy AI
550
- - AI reasoning and understanding
551
- - Human-AI teaming
552
- - Autonomous systems across domains
553
-
554
- **Quantum Technologies**:
555
- - Quantum computing and algorithms
556
- - Quantum sensing and metrology
557
- - Quantum communications
558
- - Post-quantum cryptography
559
-
560
- **Biotechnology**:
561
- - Pandemic prevention and response
562
- - Synthetic biology
563
- - Human performance
564
- - Bio-manufacturing
565
-
566
- **Microelectronics and Computing**:
567
- - Advanced chip design and manufacturing
568
- - Novel computing architectures
569
- - 3D heterogeneous integration
570
- - RF and millimeter-wave systems
571
-
572
- **Hypersonics and Advanced Materials**:
573
- - Hypersonic weapons and defense
574
- - Advanced materials and manufacturing
575
- - Thermal management
576
- - Propulsion
577
-
578
- **Space Technologies**:
579
- - Space domain awareness
580
- - On-orbit servicing and manufacturing
581
- - Small satellite technologies
582
- - Space-based intelligence
583
-
584
- **Network Technologies**:
585
- - Secure communications
586
- - Resilient networks
587
- - Spectrum dominance
588
- - Cyber defense
589
-
590
- ## Tips for Competitive DARPA Proposals
591
-
592
- ### Do's
593
-
594
- ✅ **Contact PM early** - Before writing, discuss your idea
595
- ✅ **Attend Proposers Day** - Essential for understanding program
596
- ✅ **Form strong team** - Complementary expertise, clear roles
597
- ✅ **Be bold and ambitious** - 10x goals, not 10% improvements
598
- ✅ **Quantify everything** - Specific metrics and targets
599
- ✅ **Address transition** - Clear path to operational use
600
- ✅ **Identify risks explicitly** - And explain mitigation
601
- ✅ **Show preliminary results** - Proof of concept or feasibility
602
- ✅ **Follow BAA exactly** - Format, page limits, content requirements
603
- ✅ **Emphasize innovation** - What's revolutionary about your approach?
604
-
605
- ### Don'ts
606
-
607
- ❌ **Don't propose incremental research** - DARPA wants breakthroughs
608
- ❌ **Don't ignore national security relevance** - "Who cares?" matters
609
- ❌ **Don't be vague** - Specific objectives, metrics, deliverables
610
- ❌ **Don't hide risk** - DARPA expects and values high-risk research
611
- ❌ **Don't forget transition** - Technology must have path to use
612
- ❌ **Don't propose basic research** - That's for ONR, AFOSR, ARO
613
- ❌ **Don't exceed page limits** - Automatic rejection
614
- ❌ **Don't ignore PM feedback** - They're setting the direction
615
- ❌ **Don't propose alone if team needed** - DARPA values strong teams
616
- ❌ **Don't submit without PM contact** - Critical to gauge fit
617
-
618
- ## Resources
619
-
620
- - **DARPA Website**: https://www.darpa.mil
621
- - **DARPA Opportunities**: https://www.darpa.mil/work-with-us/opportunities
622
- - **BAA Listings**: https://beta.sam.gov (search "DARPA")
623
- - **DARPA Social Media**: Twitter @DARPA (PMs often announce programs)
624
- - **SBIR/STTR**: https://www.darpa.mil/work-with-us/for-small-businesses
625
- - **Heilmeier Catechism**: https://www.darpa.mil/about-us/timeline/heilmeier-catechism
626
-
627
- ### Key Contacts
628
-
629
- - **DARPA Contracting**: via BAA points of contact
630
- - **Program Managers**: Contact info in BAAs and program pages
631
- - **SBIR/STTR Office**: sbir@darpa.mil
632
-
633
- ---
634
-
635
- **Key Takeaway**: DARPA seeks revolutionary breakthroughs that advance national security, not incremental research. Successful proposals articulate clear, measurable objectives (answering "what if true?"), demonstrate innovative approaches to "DARPA-hard" problems, include strong multidisciplinary teams, proactively address technical risks, and provide realistic paths to transition. Early engagement with the Program Manager is essential—DARPA is a PM-driven agency where understanding the vision is critical to success.
636
-