@pikaa-ai/pikaa 0.3.1 → 0.3.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cli.js +1169 -601
- package/dist/index.js +525 -204
- package/package.json +5 -3
- package/skills/adaptyv/references/api-endpoints.md +0 -690
- package/skills/aeon/references/anomaly_detection.md +0 -154
- package/skills/aeon/references/classification.md +0 -144
- package/skills/aeon/references/clustering.md +0 -123
- package/skills/aeon/references/datasets_benchmarking.md +0 -392
- package/skills/aeon/references/distances.md +0 -256
- package/skills/aeon/references/forecasting.md +0 -109
- package/skills/aeon/references/networks.md +0 -289
- package/skills/aeon/references/regression.md +0 -118
- package/skills/aeon/references/segmentation.md +0 -163
- package/skills/aeon/references/similarity_search.md +0 -187
- package/skills/aeon/references/transformations.md +0 -246
- package/skills/analytical-method-validation/assets/validation-protocol-template.md +0 -106
- package/skills/analytical-method-validation/assets/validation-report-template.md +0 -116
- package/skills/analytical-method-validation/references/compendial-and-clsi.md +0 -96
- package/skills/analytical-method-validation/references/framework-selection.md +0 -87
- package/skills/analytical-method-validation/references/ich-m10-bioanalytical.md +0 -123
- package/skills/analytical-method-validation/references/ich-q2r2.md +0 -229
- package/skills/analytical-method-validation/references/source-ledger.md +0 -125
- package/skills/analytical-method-validation/references/statistics.md +0 -209
- package/skills/analytical-method-validation/scripts/_catalog.py +0 -499
- package/skills/analytical-method-validation/scripts/_common.py +0 -955
- package/skills/analytical-method-validation/scripts/check_accuracy_precision.py +0 -328
- package/skills/analytical-method-validation/scripts/check_bioanalytical_run.py +0 -293
- package/skills/analytical-method-validation/scripts/check_detection_limits.py +0 -310
- package/skills/analytical-method-validation/scripts/check_response.py +0 -243
- package/skills/analytical-method-validation/scripts/compare_methods.py +0 -215
- package/skills/analytical-method-validation/scripts/plan_validation.py +0 -381
- package/skills/anndata/references/best_practices.md +0 -532
- package/skills/anndata/references/concatenation.md +0 -399
- package/skills/anndata/references/data_structure.md +0 -314
- package/skills/anndata/references/io_operations.md +0 -466
- package/skills/anndata/references/manipulation.md +0 -516
- package/skills/arbor/references/arbor-upstream.md +0 -91
- package/skills/arbor/references/executor-brief.md +0 -68
- package/skills/arbor/references/htr-methodology.md +0 -177
- package/skills/arbor/references/report-template.md +0 -39
- package/skills/arbor/scripts/tree.py +0 -564
- package/skills/arboreto/references/algorithms.md +0 -152
- package/skills/arboreto/references/basic_inference.md +0 -181
- package/skills/arboreto/references/distributed_computing.md +0 -242
- package/skills/arboreto/scripts/basic_grn_inference.py +0 -107
- package/skills/astropy/references/coordinates.md +0 -280
- package/skills/astropy/references/cosmology.md +0 -309
- package/skills/astropy/references/fits.md +0 -398
- package/skills/astropy/references/tables.md +0 -495
- package/skills/astropy/references/time.md +0 -412
- package/skills/astropy/references/units.md +0 -178
- package/skills/astropy/references/wcs_and_other_modules.md +0 -377
- package/skills/autoskill/config.yaml +0 -53
- package/skills/autoskill/references/https-proxy.md +0 -62
- package/skills/autoskill/references/screenpipe-config.yaml +0 -61
- package/skills/autoskill/scripts/autoskill.py +0 -35
- package/skills/autoskill/scripts/backends.py +0 -116
- package/skills/autoskill/scripts/cluster.py +0 -54
- package/skills/autoskill/scripts/doctor.py +0 -108
- package/skills/autoskill/scripts/fetch_window.py +0 -33
- package/skills/autoskill/scripts/match_skills.py +0 -46
- package/skills/autoskill/scripts/promote.py +0 -58
- package/skills/autoskill/scripts/redact.py +0 -40
- package/skills/autoskill/scripts/run.py +0 -194
- package/skills/autoskill/scripts/synthesize.py +0 -72
- package/skills/benchling-integration/references/api_endpoints.md +0 -883
- package/skills/benchling-integration/references/authentication.md +0 -390
- package/skills/benchling-integration/references/core_capabilities.md +0 -355
- package/skills/benchling-integration/references/eventbridge.md +0 -255
- package/skills/benchling-integration/references/sdk_reference.md +0 -772
- package/skills/bids/references/beps.yml +0 -637
- package/skills/bids/references/bids_schema.json +0 -21015
- package/skills/bids/references/bids_specification.md +0 -165
- package/skills/bids/references/conversion_tools.md +0 -475
- package/skills/bids/references/core_workflows.md +0 -552
- package/skills/bids/references/metadata_fields.md +0 -365
- package/skills/bids/scripts/update_schema.py +0 -89
- package/skills/biopython/references/advanced.md +0 -580
- package/skills/biopython/references/alignment.md +0 -377
- package/skills/biopython/references/blast.md +0 -463
- package/skills/biopython/references/databases.md +0 -492
- package/skills/biopython/references/phylogenetics.md +0 -566
- package/skills/biopython/references/sequence_io.md +0 -289
- package/skills/biopython/references/structure.md +0 -564
- package/skills/bioservices/references/identifier_mapping.md +0 -685
- package/skills/bioservices/references/services_reference.md +0 -638
- package/skills/bioservices/references/workflow_patterns.md +0 -813
- package/skills/bioservices/scripts/batch_id_converter.py +0 -347
- package/skills/bioservices/scripts/compound_cross_reference.py +0 -387
- package/skills/bioservices/scripts/pathway_analysis.py +0 -309
- package/skills/bioservices/scripts/protein_analysis_workflow.py +0 -441
- package/skills/bulk-rnaseq/references/counts-and-handoff.md +0 -91
- package/skills/bulk-rnaseq/references/design-and-qc.md +0 -68
- package/skills/bulk-rnaseq/references/upstream-manual.md +0 -128
- package/skills/bulk-rnaseq/references/upstream-nfcore.md +0 -108
- package/skills/bulk-rnaseq/scripts/build_counts_matrix.py +0 -203
- package/skills/bulk-rnaseq/scripts/validate_samplesheet.py +0 -206
- package/skills/cellxgene-census/references/census_schema.md +0 -218
- package/skills/cellxgene-census/references/common_patterns.md +0 -368
- package/skills/cellxgene-census/references/core_workflow_patterns.md +0 -297
- package/skills/cirq/references/building.md +0 -307
- package/skills/cirq/references/experiments.md +0 -572
- package/skills/cirq/references/hardware.md +0 -527
- package/skills/cirq/references/noise.md +0 -514
- package/skills/cirq/references/simulation.md +0 -353
- package/skills/cirq/references/transformation.md +0 -416
- package/skills/citation-management/assets/bibtex_template.bib +0 -264
- package/skills/citation-management/assets/citation_checklist.md +0 -386
- package/skills/citation-management/references/best_practices.md +0 -91
- package/skills/citation-management/references/bibtex_formatting.md +0 -908
- package/skills/citation-management/references/citation_validation.md +0 -835
- package/skills/citation-management/references/core_workflow.md +0 -569
- package/skills/citation-management/references/example_workflows.md +0 -126
- package/skills/citation-management/references/google_scholar_search.md +0 -732
- package/skills/citation-management/references/metadata_extraction.md +0 -870
- package/skills/citation-management/references/pubmed_search.md +0 -839
- package/skills/citation-management/references/script_reference.md +0 -250
- package/skills/citation-management/references/search_strategies.md +0 -110
- package/skills/citation-management/scripts/_common.py +0 -331
- package/skills/citation-management/scripts/doi_to_bibtex.py +0 -204
- package/skills/citation-management/scripts/extract_metadata.py +0 -690
- package/skills/citation-management/scripts/format_bibtex.py +0 -356
- package/skills/citation-management/scripts/search_google_scholar.py +0 -268
- package/skills/citation-management/scripts/search_openalex.py +0 -297
- package/skills/citation-management/scripts/search_pubmed.py +0 -419
- package/skills/citation-management/scripts/validate_citations.py +0 -688
- package/skills/clinical-decision-support/assets/aggregate_cohort_table_template.json +0 -114
- package/skills/clinical-decision-support/assets/aggregate_model_evaluation_template.json +0 -115
- package/skills/clinical-decision-support/assets/artifact_intended_use_template.json +0 -81
- package/skills/clinical-decision-support/assets/decision_logic_traceability_template.json +0 -108
- package/skills/clinical-decision-support/assets/deidentification_checklist_template.json +0 -176
- package/skills/clinical-decision-support/assets/evidence_profile_template.json +0 -139
- package/skills/clinical-decision-support/assets/survival_analysis_plan_template.json +0 -134
- package/skills/clinical-decision-support/references/cohort_evaluation.md +0 -142
- package/skills/clinical-decision-support/references/decision_logic_traceability.md +0 -146
- package/skills/clinical-decision-support/references/evidence_profiles.md +0 -153
- package/skills/clinical-decision-support/references/model_biomarker_evaluation.md +0 -152
- package/skills/clinical-decision-support/references/privacy_and_disclosure.md +0 -144
- package/skills/clinical-decision-support/references/regulatory_and_governance.md +0 -104
- package/skills/clinical-decision-support/references/safety_and_scope.md +0 -103
- package/skills/clinical-decision-support/references/security_validation.md +0 -60
- package/skills/clinical-decision-support/references/sources.md +0 -119
- package/skills/clinical-decision-support/references/study_reporting.md +0 -134
- package/skills/clinical-decision-support/references/survival_analysis.md +0 -156
- package/skills/clinical-decision-support/scripts/_common.py +0 -223
- package/skills/clinical-decision-support/scripts/cohort_table_generator.py +0 -288
- package/skills/clinical-decision-support/scripts/decision_logic_traceability.py +0 -313
- package/skills/clinical-decision-support/scripts/deidentification_checklist.py +0 -260
- package/skills/clinical-decision-support/scripts/evidence_profile_check.py +0 -259
- package/skills/clinical-decision-support/scripts/model_biomarker_evaluation.py +0 -345
- package/skills/clinical-decision-support/scripts/survival_plan_validator.py +0 -294
- package/skills/clinical-decision-support/scripts/validate_cds_artifact.py +0 -269
- package/skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv +0 -1
- package/skills/clinical-reports/assets/case_report_template.json +0 -43
- package/skills/clinical-reports/assets/clinical_trial_csr_template.json +0 -51
- package/skills/clinical-reports/assets/clinical_trial_results_template.json +0 -66
- package/skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json +0 -49
- package/skills/clinical-reports/assets/consistency_manifest_template.json +0 -15
- package/skills/clinical-reports/assets/deidentification_process_checklist.json +0 -56
- package/skills/clinical-reports/assets/lab_report_template.json +0 -36
- package/skills/clinical-reports/assets/pathology_report_template.json +0 -36
- package/skills/clinical-reports/assets/provenance_manifest_template.json +0 -17
- package/skills/clinical-reports/assets/quality_review_checklist.json +0 -34
- package/skills/clinical-reports/assets/radiology_report_template.json +0 -34
- package/skills/clinical-reports/assets/research_summary_template.json +0 -36
- package/skills/clinical-reports/assets/terminology_manifest_template.json +0 -11
- package/skills/clinical-reports/assets/trial_protocol_reporting_checklist.json +0 -70
- package/skills/clinical-reports/references/case_report_guidelines.md +0 -72
- package/skills/clinical-reports/references/clinical_trial_reporting.md +0 -97
- package/skills/clinical-reports/references/data_presentation.md +0 -92
- package/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -76
- package/skills/clinical-reports/references/medical_terminology.md +0 -84
- package/skills/clinical-reports/references/privacy_and_deidentification.md +0 -84
- package/skills/clinical-reports/references/professional_review.md +0 -78
- package/skills/clinical-reports/references/report_type_routing.md +0 -57
- package/skills/clinical-reports/references/safety_reporting.md +0 -109
- package/skills/clinical-reports/references/sources.md +0 -75
- package/skills/clinical-reports/scripts/_common.py +0 -263
- package/skills/clinical-reports/scripts/check_deidentification.py +0 -298
- package/skills/clinical-reports/scripts/consistency_checker.py +0 -390
- package/skills/clinical-reports/scripts/format_adverse_events.py +0 -455
- package/skills/clinical-reports/scripts/generate_report_template.py +0 -115
- package/skills/clinical-reports/scripts/provenance_validator.py +0 -263
- package/skills/clinical-reports/scripts/terminology_validator.py +0 -277
- package/skills/clinical-reports/scripts/validate_case_report.py +0 -278
- package/skills/clinical-reports/scripts/validate_trial_report.py +0 -534
- package/skills/cobrapy/references/api_quick_reference.md +0 -665
- package/skills/cobrapy/references/workflows.md +0 -600
- package/skills/consciousness-council/references/advanced-configurations.md +0 -96
- package/skills/dask/references/arrays.md +0 -495
- package/skills/dask/references/bags.md +0 -468
- package/skills/dask/references/best-practices.md +0 -277
- package/skills/dask/references/dataframes.md +0 -370
- package/skills/dask/references/futures.md +0 -541
- package/skills/dask/references/schedulers.md +0 -517
- package/skills/database-lookup/references/addgene.md +0 -38
- package/skills/database-lookup/references/alphafold.md +0 -52
- package/skills/database-lookup/references/alphavantage.md +0 -261
- package/skills/database-lookup/references/bea.md +0 -409
- package/skills/database-lookup/references/bindingdb.md +0 -85
- package/skills/database-lookup/references/biogrid.md +0 -110
- package/skills/database-lookup/references/bls.md +0 -235
- package/skills/database-lookup/references/brenda.md +0 -71
- package/skills/database-lookup/references/cbioportal.md +0 -206
- package/skills/database-lookup/references/census.md +0 -251
- package/skills/database-lookup/references/chebi.md +0 -103
- package/skills/database-lookup/references/chembl.md +0 -80
- package/skills/database-lookup/references/clinicaltrials.md +0 -86
- package/skills/database-lookup/references/clinpgx.md +0 -64
- package/skills/database-lookup/references/clinvar.md +0 -91
- package/skills/database-lookup/references/cod.md +0 -121
- package/skills/database-lookup/references/cosmic.md +0 -59
- package/skills/database-lookup/references/dailymed.md +0 -65
- package/skills/database-lookup/references/database_selection_guide.md +0 -166
- package/skills/database-lookup/references/datacommons.md +0 -237
- package/skills/database-lookup/references/dbsnp.md +0 -143
- package/skills/database-lookup/references/disgenet.md +0 -52
- package/skills/database-lookup/references/drugbank.md +0 -54
- package/skills/database-lookup/references/ecb.md +0 -191
- package/skills/database-lookup/references/emdb.md +0 -37
- package/skills/database-lookup/references/ena.md +0 -372
- package/skills/database-lookup/references/encode.md +0 -47
- package/skills/database-lookup/references/ensembl.md +0 -539
- package/skills/database-lookup/references/epa.md +0 -232
- package/skills/database-lookup/references/eurostat.md +0 -237
- package/skills/database-lookup/references/fda.md +0 -64
- package/skills/database-lookup/references/federal-reserve.md +0 -216
- package/skills/database-lookup/references/fred.md +0 -297
- package/skills/database-lookup/references/gene-ontology.md +0 -147
- package/skills/database-lookup/references/geo.md +0 -130
- package/skills/database-lookup/references/gnomad.md +0 -93
- package/skills/database-lookup/references/gtex.md +0 -136
- package/skills/database-lookup/references/gwas-catalog.md +0 -46
- package/skills/database-lookup/references/hca.md +0 -35
- package/skills/database-lookup/references/hpo.md +0 -48
- package/skills/database-lookup/references/human-protein-atlas.md +0 -57
- package/skills/database-lookup/references/interpro.md +0 -120
- package/skills/database-lookup/references/jaspar.md +0 -50
- package/skills/database-lookup/references/kegg.md +0 -78
- package/skills/database-lookup/references/lincs-l1000.md +0 -68
- package/skills/database-lookup/references/materials-project.md +0 -123
- package/skills/database-lookup/references/metabolomics-workbench.md +0 -98
- package/skills/database-lookup/references/monarch.md +0 -46
- package/skills/database-lookup/references/mousemine.md +0 -40
- package/skills/database-lookup/references/nasa-exoplanet-archive.md +0 -112
- package/skills/database-lookup/references/nasa.md +0 -121
- package/skills/database-lookup/references/ncbi-gene.md +0 -64
- package/skills/database-lookup/references/ncbi-protein.md +0 -104
- package/skills/database-lookup/references/ncbi-taxonomy.md +0 -121
- package/skills/database-lookup/references/nist.md +0 -105
- package/skills/database-lookup/references/noaa.md +0 -199
- package/skills/database-lookup/references/omim.md +0 -114
- package/skills/database-lookup/references/opentargets.md +0 -459
- package/skills/database-lookup/references/openweathermap.md +0 -255
- package/skills/database-lookup/references/pdb.md +0 -121
- package/skills/database-lookup/references/pride.md +0 -74
- package/skills/database-lookup/references/pubchem.md +0 -145
- package/skills/database-lookup/references/quickgo.md +0 -45
- package/skills/database-lookup/references/reactome.md +0 -140
- package/skills/database-lookup/references/retrieval-contract.md +0 -123
- package/skills/database-lookup/references/rummageo.md +0 -32
- package/skills/database-lookup/references/sdss.md +0 -130
- package/skills/database-lookup/references/sec-edgar.md +0 -315
- package/skills/database-lookup/references/simbad.md +0 -405
- package/skills/database-lookup/references/sra.md +0 -149
- package/skills/database-lookup/references/string.md +0 -283
- package/skills/database-lookup/references/tcga-gdc.md +0 -58
- package/skills/database-lookup/references/treasury.md +0 -215
- package/skills/database-lookup/references/ucsc-genome.md +0 -135
- package/skills/database-lookup/references/uniprot.md +0 -283
- package/skills/database-lookup/references/usgs.md +0 -260
- package/skills/database-lookup/references/uspto.md +0 -130
- package/skills/database-lookup/references/who.md +0 -283
- package/skills/database-lookup/references/worldbank.md +0 -239
- package/skills/database-lookup/references/zinc.md +0 -202
- package/skills/datamol/references/conformers_module.md +0 -131
- package/skills/datamol/references/core_api.md +0 -136
- package/skills/datamol/references/core_workflows.md +0 -451
- package/skills/datamol/references/descriptors_viz.md +0 -195
- package/skills/datamol/references/fragments_scaffolds.md +0 -174
- package/skills/datamol/references/io_module.md +0 -112
- package/skills/datamol/references/reactions_data.md +0 -218
- package/skills/datamol/references/workflow_patterns.md +0 -104
- package/skills/deepchem/references/api_reference.md +0 -305
- package/skills/deepchem/references/core_capabilities.md +0 -276
- package/skills/deepchem/references/typical_workflows.md +0 -109
- package/skills/deepchem/references/workflows.md +0 -491
- package/skills/deepchem/scripts/graph_neural_network.py +0 -350
- package/skills/deepchem/scripts/predict_solubility.py +0 -223
- package/skills/deepchem/scripts/transfer_learning.py +0 -443
- package/skills/deepspot-m/references/api.md +0 -186
- package/skills/deepspot-m/references/whole_slide.md +0 -174
- package/skills/deeptools/assets/quick_reference.md +0 -65
- package/skills/deeptools/references/core_workflows.md +0 -134
- package/skills/deeptools/references/effective_genome_sizes.md +0 -118
- package/skills/deeptools/references/normalization_methods.md +0 -424
- package/skills/deeptools/references/tools_reference.md +0 -569
- package/skills/deeptools/references/workflows.md +0 -476
- package/skills/deeptools/scripts/validate_files.py +0 -195
- package/skills/deeptools/scripts/workflow_generator.py +0 -520
- package/skills/depmap/references/dependency_analysis.md +0 -178
- package/skills/dhdna-profiler/references/advanced-profiling.md +0 -72
- package/skills/diffdock/assets/batch_template.csv +0 -4
- package/skills/diffdock/assets/custom_inference_config.yaml +0 -94
- package/skills/diffdock/references/confidence_and_limitations.md +0 -182
- package/skills/diffdock/references/parameters_reference.md +0 -173
- package/skills/diffdock/references/workflows_examples.md +0 -401
- package/skills/diffdock/scripts/analyze_results.py +0 -346
- package/skills/diffdock/scripts/prepare_batch_csv.py +0 -257
- package/skills/diffdock/scripts/setup_check.py +0 -283
- package/skills/dnanexus-integration/references/app-development.md +0 -371
- package/skills/dnanexus-integration/references/authentication.md +0 -226
- package/skills/dnanexus-integration/references/configuration.md +0 -444
- package/skills/dnanexus-integration/references/data-operations.md +0 -474
- package/skills/dnanexus-integration/references/job-execution.md +0 -482
- package/skills/dnanexus-integration/references/operations-and-troubleshooting.md +0 -506
- package/skills/dnanexus-integration/references/python-sdk.md +0 -548
- package/skills/dnanexus-integration/references/sources.md +0 -168
- package/skills/dnanexus-integration/references/workflow-languages.md +0 -292
- package/skills/dnanexus-integration/scripts/inspect_dxpy.py +0 -366
- package/skills/dnanexus-integration/scripts/validate_dxapp.py +0 -796
- package/skills/docx/LICENSE.txt +0 -30
- package/skills/docx/scripts/__init__.py +0 -1
- package/skills/docx/scripts/accept_changes.py +0 -135
- package/skills/docx/scripts/comment.py +0 -368
- package/skills/docx/scripts/merge_runs.py +0 -310
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- package/skills/xlsx/scripts/office/schemas/microsoft/wml-cid-2016.xsd +0 -13
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-sdtdatahash-2020.xsd +0 -4
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-symex-2015.xsd +0 -8
- package/skills/xlsx/scripts/office/soffice.py +0 -232
- package/skills/xlsx/scripts/office/validate.py +0 -173
- package/skills/xlsx/scripts/office/validators/__init__.py +0 -15
- package/skills/xlsx/scripts/office/validators/base.py +0 -875
- package/skills/xlsx/scripts/office/validators/docx.py +0 -466
- package/skills/xlsx/scripts/office/validators/pptx.py +0 -441
- package/skills/xlsx/scripts/office/validators/redlining.py +0 -299
- package/skills/xlsx/scripts/recalc.py +0 -308
- package/skills/zarr-python/references/api_reference.md +0 -162
- package/skills/zarr-python/references/chunking_and_compression.md +0 -138
- package/skills/zarr-python/references/integration.md +0 -147
- package/skills/zarr-python/references/performance_and_patterns.md +0 -198
- package/skills/zarr-python/references/storage_backends.md +0 -91
- package/skills/zarr-python/references/v3_migration.md +0 -127
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# Resource Semantics
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Research and behavior cut-off: **2026-07-23**. See
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[`sources.md`](sources.md) for the official documentation used.
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## Core rule: inventory is not entitlement
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Never treat a host-wide count as a promise that the current process can use it.
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Interpret usable resources as the intersection of independently observed
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constraints:
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1. host inventory;
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2. process affinity or processor-group scope;
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3. cgroup/container constraints;
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4. scheduler allocation;
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5. accelerator visibility and device permissions; and
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6. application runtime compatibility.
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Missing evidence means **unknown**, not unlimited. Scheduler variables can
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describe an allocation without proving that affinity or cgroup enforcement is
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enabled. Conversely, a cgroup or affinity mask can be stricter than the
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scheduler request.
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## CPU
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### Physical and logical CPUs
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- A logical CPU is an operating-system scheduling unit. Simultaneous
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multithreading can expose multiple logical CPUs on one physical core.
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- A physical-core count describes topology, not the number of independent
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workers the process may start.
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- `os.cpu_count()` and `psutil.cpu_count(logical=True)` are host/system
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inventory. They can exceed the CPUs usable by the process.
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- `os.process_cpu_count()` (Python 3.13+) is process-aware. On supported
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platforms, affinity APIs provide a more explicit process constraint.
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- On Windows systems with multiple processor groups, a system-wide logical
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count and one process/thread group's usable count can differ.
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The detector reports host logical and physical counts separately. It never
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derives physical cores from a logical count.
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### Affinity, cpusets, and quotas
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- Process affinity limits the logical CPUs on which a process may execute.
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- Linux `cpuset.cpus.effective` reports CPUs actually granted after parent
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constraints. The requested `cpuset.cpus` can differ.
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- `/proc/self/status` exposes `Cpus_allowed_list`, but the detector prefers
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affinity APIs and cgroup effective cpusets.
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- cgroup v2 `cpu.max` is `$MAX $PERIOD`. `max` means no local bandwidth limit.
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A finite ratio is CPU-time capacity, possibly fractional; it is not a core
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topology count.
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- Parent cgroups also constrain children, so the detector takes the most
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restrictive finite ancestor quota.
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For a `cpu.max` ratio of 1.5, the snapshot reports
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`capacity_cores: 1.5` and a conservative CPU-bound worker ceiling of 1. A
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workload may choose more threads for latency hiding, but it should expect
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throttling and must not describe those threads as 1.5 physical cores.
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### Python worker pools
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- Current Python `multiprocessing.Pool` and `ProcessPoolExecutor` defaults use
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`os.process_cpu_count()` when available.
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- Python 3.14 no longer uses `fork` as the default start method on any platform.
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Code that depends on a particular start method must request it deliberately.
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- Process workers do not make each worker's native-library threads disappear.
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BLAS/OpenMP threads multiplied by process workers commonly oversubscribe an
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allocation.
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- Windows `ProcessPoolExecutor` has a documented maximum of 61 workers.
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Use the workload planner's worker and threads-per-worker values as conservative
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ceilings, then benchmark a real representative workload. Do not run a synthetic
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stress test merely to discover capacity.
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## Memory
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### Host and effective memory
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- `psutil.virtual_memory().total` and `.available` describe system-visible
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memory, not necessarily the process limit.
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- Linux `/proc/meminfo` `MemAvailable` is the standard-library fallback for a
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host-availability estimate.
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- cgroup v2 `memory.current` is current cgroup usage.
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- `memory.high` is a throttle/reclaim pressure boundary. Exceeding it does not
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itself invoke the cgroup OOM killer, and the value can be breached.
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- `memory.max` is the hard cgroup limit. If usage cannot be reduced at that
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boundary, the cgroup OOM killer can run.
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- Parent memory limits are hierarchical. Shared ancestor usage can reduce what
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remains for a child, so effective remaining memory is the minimum finite
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`limit - current` observed through the ancestor chain.
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- Slurm memory variables describe requested/allocated memory, but strict
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enforcement depends on site configuration.
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and the conservative effective values distinct. A point-in-time "available"
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value can change immediately and is not a reservation.
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### macOS unified memory
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On Apple silicon, CPU and integrated GPU share unified memory. Do not add a
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fictional GPU VRAM amount to system RAM. The snapshot marks the memory model as
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`unified_cpu_gpu` and leaves dedicated GPU memory null. Metal framework support
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and model/operator support still require application-specific checks.
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## Accelerators
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Accelerator usability has separate layers:
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1. **Hardware or management visibility** — a management query returns a device.
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2. **Allocation visibility** — scheduler and named visibility variables permit
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a device or a subset.
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3. **Device permission** — the process/container can open the required device
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interfaces.
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4. **Driver/runtime compatibility** — driver, CUDA/ROCm/Metal runtime, and
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framework versions are compatible.
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5. **Workload compatibility** — the requested operation and data type are
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implemented on that backend.
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`nvidia-smi` success confirms NVIDIA management visibility only. It does not
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prove that CUDA libraries exist or are compatible. NVIDIA documents driver and
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runtime compatibility as a separate requirement.
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AMD SMI or ROCm SMI success likewise does not prove HIP/ROCm runtime usability.
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New deployments should prefer `amd-smi`; `rocm-smi` is retained as a read-only
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fallback. On Linux, AMD recommends `ROCR_VISIBLE_DEVICES`; on Windows it
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recommends `HIP_VISIBLE_DEVICES`.
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An Apple integrated GPU is a Metal candidate, not a CUDA GPU. AMD GPUs are ROCm
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candidates, not CUDA GPUs. Neural engines, TPUs, FPGAs, and other accelerators
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must also remain distinct from CUDA devices if another inventory source adds
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them.
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The detector reads only these accelerator variable names and redacts their
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values:
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- `NVIDIA_VISIBLE_DEVICES`
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- `CUDA_VISIBLE_DEVICES`
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- `ROCR_VISIBLE_DEVICES`
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- `HIP_VISIBLE_DEVICES`
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Counts derived from those values are only upper bounds. Environment variables
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are not a security boundary and can be reset by an application; device
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namespace/cgroup controls are stronger isolation.
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## Slurm and other schedulers
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The detector allowlists named Slurm variables and never dumps the environment.
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It records field names, parsed bounded counts, and memory quantities, but not
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job IDs, GPU UUIDs, node names, submit hosts, or paths.
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Important scopes:
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- `SLURM_CPUS_PER_TASK`: requested CPUs per task; suitable as a per-process
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upper bound for one task process.
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- `SLURM_CPUS_ON_NODE`: CPUs allocated to the current batch step on the node;
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it can be shared among tasks.
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- `SLURM_JOB_CPUS_PER_NODE`: a per-node allocation list, not a process count.
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- `SLURM_MEM_PER_CPU`: memory per allocated CPU. It becomes a per-task bound
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only when CPUs per task is known.
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- `SLURM_MEM_PER_NODE`: shared per-node memory upper bound.
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- `SLURM_GPUS_PER_TASK`: requested GPUs per task.
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- `SLURM_GPUS_ON_NODE`: GPUs allocated to the batch step on the node.
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Slurm CPU confinement requires site configuration such as task affinity or
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`task/cgroup` with core constraints. Memory requests are not strictly enforced
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unless the site enables an enforcement mechanism. Use affinity and cgroup
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observations as enforcement evidence; do not trust visible node inventory.
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For other schedulers, use their documented allocation API or variables and the
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same rule: allocation metadata and kernel enforcement are different facts.
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Do not guess from generic environment names.
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## Containers and OCI
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Docker containers have no CPU or memory limit by default. When configured,
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Docker maps CPU and memory flags to cgroup controls. OCI runtime configuration
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also defines CPU, memory, and device constraints.
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Inside a container:
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- host inventory may remain visible;
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- a CPU quota can be smaller than the visible CPU set;
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- a cpuset can be smaller than the quota's apparent capacity;
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- cgroup memory can be smaller than host RAM;
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- GPU management tools can see a different set from the application runtime;
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and
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- mounted-volume capacity can differ from writable quota.
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Always report observed cgroup controls and uncertainty. A container marker
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without a finite cgroup value does not imply a finite limit.
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## Disk
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Capacity, free blocks, user-writable blocks, path permission, filesystem quota,
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and actual ability to complete a write are different:
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- capacity is the filesystem's total size;
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- free blocks can include blocks reserved from an unprivileged user;
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- POSIX `f_bavail` estimates blocks available to the current user;
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- `os.access(..., os.W_OK)` is a non-writing permission check, not proof that a
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future write will succeed;
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- project/user quotas and remote storage policies can be stricter than block
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counts.
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The detector does not create a probe file. It redacts the absolute working path
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and labels the scope as the working filesystem.
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# Snapshot Schema 1.1
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The detector emits one JSON object with sorted keys. Values vary by observation,
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but field names and meanings are stable for schema `1.1`.
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## Top-level contract
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- `schema_version`: `"1.1"`.
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- `snapshot_kind`: `"effective_resource_snapshot"`.
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- `observed_at`: UTC observation time.
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- `completeness`: `complete`, `complete_with_informational_notes`, or
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`partial`.
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- `platform`: OS family, architecture, and Python version. Hostname is omitted.
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- `privacy`: explicit redaction flags.
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- `cpu`, `memory`, `disk`, `accelerators`: resource observations.
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- `cgroup_v2`, `container`, `scheduler`: execution-context observations.
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- `warnings`: bounded sorted warning records.
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- `provenance`: bounded sorted source/status records.
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Null means unavailable, not zero and not unlimited. Zero is used only when a
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source explicitly establishes zero (for example, a named accelerator visibility
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variable that hides all devices).
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## CPU
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`cpu.host`:
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- `logical`: system-visible logical CPUs.
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- `physical`: system-visible physical cores, or null. This value is not
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converted into an effective process count.
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`cpu.process`:
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- `affinity_logical`: size of the current affinity set when supported.
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- `python_available_logical`: `os.process_cpu_count()` when supported.
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`cpu.cgroup_v2`:
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- `cpuset_logical`: count from `cpuset.cpus.effective`.
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- `quota_cores`: most restrictive finite ancestor `cpu.max` ratio. This may be
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fractional.
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`cpu.effective`:
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- `capacity_cores`: minimum positive host/process/cgroup/scheduler capacity.
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- `worker_ceiling`: conservative bounded floor for CPU process workers.
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- `limiting_sources`: sources tied at that minimum.
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The effective value is intentionally not called a physical-core count.
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## Memory
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`memory.host` preserves system-visible `total_bytes` and `available_bytes`.
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`memory.cgroup_v2` preserves current-cgroup usage and hierarchical effective
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limits:
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- `current_bytes`
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- `available_bytes`
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- `high_bytes`
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- `max_bytes`
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`memory.effective`:
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- `hard_limit_bytes`: minimum of finite host total, cgroup hard limit, and
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interpretable scheduler allocation.
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- `available_bytes`: minimum of host available, hierarchical cgroup remaining,
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and scheduler upper bound.
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- `pressure_threshold_bytes`: cgroup `memory.high`; it is not relabeled as a
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hard limit.
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- `hard_limit_sources` and `available_limiting_sources`: tied minimum sources.
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`memory.model` is `unified_cpu_gpu` on Apple silicon and `system_ram`
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otherwise. Unified GPU memory is not added again as dedicated VRAM.
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## Disk
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- `capacity_bytes`: total working-filesystem capacity.
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- `free_bytes`: filesystem free blocks.
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- `user_available_bytes`: user-available blocks where the OS exposes them.
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- `writable`: result of a non-writing access check.
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- `writability_check`: makes clear that no write probe occurred.
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- `scope`: `working_filesystem_path_redacted`.
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None of these values proves that a filesystem or project quota permits a write
|
|
86
|
-
of the same size.
|
|
87
|
-
|
|
88
|
-
## Accelerators
|
|
89
|
-
|
|
90
|
-
`accelerators.devices` contains management-visible or explicitly
|
|
91
|
-
platform-inferred candidates:
|
|
92
|
-
|
|
93
|
-
- `vendor`: `nvidia`, `amd`, or `apple`.
|
|
94
|
-
- `device_class`: keeps integrated and discrete GPU concepts distinct.
|
|
95
|
-
- `backend_candidate`: `cuda`, `rocm`, or `metal`.
|
|
96
|
-
- `management_query`: visibility evidence.
|
|
97
|
-
- `device_permission`: `not_tested`; a query does not prove device-node access.
|
|
98
|
-
- `runtime_compatibility`: `not_tested` in detector output.
|
|
99
|
-
- `memory.model`: dedicated/HBM, unified, or unknown.
|
|
100
|
-
- `local_index`: local query index; stable UUIDs and PCI addresses are omitted.
|
|
101
|
-
|
|
102
|
-
`candidate_counts` is a query count, not a usable-device count.
|
|
103
|
-
`candidate_upper_bounds` conservatively intersects query count with parsed
|
|
104
|
-
visibility/allocation counts when available. `runtime_usable_devices` remains
|
|
105
|
-
null because no framework runtime is loaded.
|
|
106
|
-
|
|
107
|
-
`visibility_environment` includes only four allowlisted variable names. Raw
|
|
108
|
-
values are never emitted.
|
|
109
|
-
|
|
110
|
-
## Scheduler and cgroup
|
|
111
|
-
|
|
112
|
-
`scheduler.fields_read` lists allowlisted Slurm names that were present.
|
|
113
|
-
`scheduler.allocation` contains parsed bounded values and scopes.
|
|
114
|
-
`scheduler.enforcement` remains `unknown`; variables alone do not prove
|
|
115
|
-
confinement.
|
|
116
|
-
|
|
117
|
-
`cgroup_v2.scope` says only `root`, `non_root`, `unknown`, or `not_applicable`.
|
|
118
|
-
The cgroup path is not emitted.
|
|
119
|
-
|
|
120
|
-
`container.detected` requires a known marker. A `cgroup_limit` can appear as
|
|
121
|
-
evidence without asserting that the process is in a container.
|
|
122
|
-
|
|
123
|
-
## Warnings and provenance
|
|
124
|
-
|
|
125
|
-
Warnings use:
|
|
126
|
-
|
|
127
|
-
```json
|
|
128
|
-
{
|
|
129
|
-
"code": "STABLE_MACHINE_CODE",
|
|
130
|
-
"component": "cpu",
|
|
131
|
-
"message": "Human-readable, sanitized explanation.",
|
|
132
|
-
"severity": "info"
|
|
133
|
-
}
|
|
134
|
-
```
|
|
135
|
-
|
|
136
|
-
Probe exception text, stderr, paths, hostnames, device UUIDs, and broad
|
|
137
|
-
environment content are excluded.
|
|
138
|
-
|
|
139
|
-
Provenance uses:
|
|
140
|
-
|
|
141
|
-
```json
|
|
142
|
-
{
|
|
143
|
-
"component": "cpu.process.affinity_logical",
|
|
144
|
-
"source": "os.sched_getaffinity",
|
|
145
|
-
"status": "ok"
|
|
146
|
-
}
|
|
147
|
-
```
|
|
148
|
-
|
|
149
|
-
Possible status values include `ok`, `unavailable`, `absent`, `skipped`,
|
|
150
|
-
`not_found`, `timeout`, `truncated`, `error`, and `parse_error`.
|
|
151
|
-
|
|
152
|
-
## Validation and diff
|
|
153
|
-
|
|
154
|
-
Validate:
|
|
155
|
-
|
|
156
|
-
```bash
|
|
157
|
-
python scripts/snapshot_tools.py validate resource-snapshot.json
|
|
158
|
-
```
|
|
159
|
-
|
|
160
|
-
Diff while ignoring `observed_at`:
|
|
161
|
-
|
|
162
|
-
```bash
|
|
163
|
-
python scripts/snapshot_tools.py diff before.json after.json
|
|
164
|
-
```
|
|
165
|
-
|
|
166
|
-
Use `--include-volatile` only when timestamp changes matter. Diff output is
|
|
167
|
-
bounded to 512 changes.
|
|
168
|
-
|
|
169
|
-
All helper inputs are regular, non-symlink JSON files no larger than 1 MiB.
|
|
170
|
-
Output defaults to stdout. Explicit file output is restricted to a `.json`
|
|
171
|
-
filename in the current directory, refuses overwrite unless `--force` is used,
|
|
172
|
-
and is opened with private permissions.
|
|
@@ -1,124 +0,0 @@
|
|
|
1
|
-
# Official Sources
|
|
2
|
-
|
|
3
|
-
Research cut-off: **2026-07-23**. Every URL below was consulted on that
|
|
4
|
-
date. Undated living documentation is labeled "living docs"; a date in
|
|
5
|
-
parentheses is the page/release date visible in the source.
|
|
6
|
-
|
|
7
|
-
## psutil
|
|
8
|
-
|
|
9
|
-
- [psutil 7.2.2 documentation](https://psutil.readthedocs.io/) — living docs.
|
|
10
|
-
Used for logical versus physical CPU counts, the warning that system CPU
|
|
11
|
-
count can differ from process-usable CPUs under affinity/cgroups/Windows
|
|
12
|
-
processor groups, `Process.cpu_affinity()`, `virtual_memory()`,
|
|
13
|
-
`swap_memory()`, and `disk_usage()`.
|
|
14
|
-
- [psutil 7.2.2 on PyPI](https://pypi.org/project/psutil/7.2.2/) — current
|
|
15
|
-
stable package pin verified 2026-07-23.
|
|
16
|
-
|
|
17
|
-
## Python
|
|
18
|
-
|
|
19
|
-
- [Python `os` documentation](https://docs.python.org/3/library/os.html) —
|
|
20
|
-
Python 3.14.6 living docs. Used for `os.cpu_count()`,
|
|
21
|
-
`os.process_cpu_count()`, and `os.sched_getaffinity()`.
|
|
22
|
-
- [Python multiprocessing](https://docs.python.org/3/library/multiprocessing.html)
|
|
23
|
-
— Python 3.14.6 living docs. Used for process-aware pool defaults and the
|
|
24
|
-
Python 3.14 start-method change.
|
|
25
|
-
- [Python concurrent.futures](https://docs.python.org/3/library/concurrent.futures.html)
|
|
26
|
-
— Python 3.14.6 living docs. Used for `ProcessPoolExecutor` defaults,
|
|
27
|
-
Windows' 61-worker maximum, and `ThreadPoolExecutor` defaults.
|
|
28
|
-
|
|
29
|
-
## Linux procfs and cgroup v2
|
|
30
|
-
|
|
31
|
-
- [Linux kernel `/proc` filesystem documentation](https://docs.kernel.org/filesystems/proc.html)
|
|
32
|
-
— living kernel docs. Used for `Cpus_allowed` and
|
|
33
|
-
`Cpus_allowed_list`.
|
|
34
|
-
- [Linux kernel cgroup v2 documentation](https://docs.kernel.org/admin-guide/cgroup-v2.html)
|
|
35
|
-
— living kernel docs; page history begins 2014-07-15. Used for
|
|
36
|
-
`cpu.max`, `cpuset.cpus.effective`, `memory.current`, `memory.high`,
|
|
37
|
-
`memory.max`, hierarchy, reclaim, and cgroup OOM behavior.
|
|
38
|
-
- [Linux kernel cpuset documentation](https://www.kernel.org/doc/html/latest/admin-guide/cgroup-v1/cpusets.html)
|
|
39
|
-
— living kernel docs. Used to cross-check the interaction between affinity
|
|
40
|
-
masks and cpuset constraints.
|
|
41
|
-
|
|
42
|
-
## Containers and OCI
|
|
43
|
-
|
|
44
|
-
- [Docker resource constraints](https://docs.docker.com/engine/containers/resource_constraints/)
|
|
45
|
-
— living docs. Used for Docker's default lack of constraints, `--cpus`,
|
|
46
|
-
quota/period, cpusets, and memory controls.
|
|
47
|
-
- [OCI Runtime Specification: Linux resources](https://specs.opencontainers.org/runtime-spec/config-linux/?v=v1.3.0)
|
|
48
|
-
— OCI Runtime Spec 1.3.0. Used for CPU, memory, cgroup, and device resource
|
|
49
|
-
semantics.
|
|
50
|
-
|
|
51
|
-
## NVIDIA
|
|
52
|
-
|
|
53
|
-
- [NVIDIA System Management Interface manual](https://docs.nvidia.com/deploy/nvidia-smi/index.html)
|
|
54
|
-
— living docs. Used for fixed `--query-gpu` fields and
|
|
55
|
-
`--format=csv,noheader,nounits`; NVIDIA notes that index ordering is not
|
|
56
|
-
stable, which is why snapshots do not claim a persistent identity.
|
|
57
|
-
- [NVIDIA Container Toolkit specialized configurations](https://docs.nvidia.com/datacenter/cloud-native/container-toolkit/latest/docker-specialized.html)
|
|
58
|
-
— living docs. Used for `NVIDIA_VISIBLE_DEVICES`, driver capabilities, and
|
|
59
|
-
runtime constraints.
|
|
60
|
-
- [NVIDIA `CUDA_VISIBLE_DEVICES`](https://docs.nvidia.com/deploy/topics/topic_5_2_1.html)
|
|
61
|
-
— official deployment documentation. Used for CUDA application visibility.
|
|
62
|
-
- [NVIDIA CUDA compatibility](https://docs.nvidia.com/deploy/cuda-compatibility/latest/why-cuda-compatibility.html)
|
|
63
|
-
— living docs. Used to distinguish management visibility from compatible
|
|
64
|
-
GPU, driver, CUDA runtime, and dynamically linked libraries.
|
|
65
|
-
|
|
66
|
-
## AMD ROCm
|
|
67
|
-
|
|
68
|
-
- [AMD SMI CLI tool](https://rocm.docs.amd.com/projects/amdsmi/en/docs-7.2.0/how-to/amdsmi-cli-tool.html)
|
|
69
|
-
— AMD SMI 7.2.0 docs. Used for read-only `list`/`static` JSON output and the
|
|
70
|
-
meaning of unavailable fields.
|
|
71
|
-
- [ROCm SMI Python/CLI usage](https://rocm.docs.amd.com/projects/rocm_smi_lib/en/latest/how-to/use-python.html)
|
|
72
|
-
— living docs. Used for the legacy `rocm-smi` read-only fallback.
|
|
73
|
-
- [ROCm GPU isolation techniques](https://rocm.docs.amd.com/en/docs-7.2.4/conceptual/gpu-isolation.html)
|
|
74
|
-
— ROCm 7.2.4 docs. Used for `ROCR_VISIBLE_DEVICES`,
|
|
75
|
-
`HIP_VISIBLE_DEVICES`, `CUDA_VISIBLE_DEVICES`, Docker device isolation, and
|
|
76
|
-
the warning that environment variables are not isolation for untrusted code.
|
|
77
|
-
- [ROCm environment variables](https://rocm.docs.amd.com/en/latest/reference/environment-variables/index.html)
|
|
78
|
-
— living docs. Used for AMD's Linux/Windows visibility-variable
|
|
79
|
-
recommendations.
|
|
80
|
-
|
|
81
|
-
## Apple
|
|
82
|
-
|
|
83
|
-
- [Apple: Determining system capabilities](https://developer.apple.com/documentation/kernel/1387446-sysctlbyname/determining_system_capabilities)
|
|
84
|
-
— living Apple Developer docs. Used for `hw.logicalcpu`,
|
|
85
|
-
`hw.physicalcpu`, `hw.memsize`, performance levels, and the distinction
|
|
86
|
-
between logical and physical cores.
|
|
87
|
-
- [Apple `sysctl(3)` manual](https://developer.apple.com/library/archive/documentation/System/Conceptual/ManPages_iPhoneOS/man3/sysctl.3.html)
|
|
88
|
-
— archived official manual. Used to cross-check physical-memory fields.
|
|
89
|
-
- [Apple Developer Technical Support: system_profiler and integrated/SoC memory](https://developer.apple.com/forums/thread/688443)
|
|
90
|
-
— Apple DTS response dated 2021-08-24. Used for parseable
|
|
91
|
-
`system_profiler` output and the warning that DIMM-style details do not map
|
|
92
|
-
cleanly to integrated or Apple silicon memory.
|
|
93
|
-
- The fixed `system_profiler SPDisplaysDataType -json` and named `sysctl -n`
|
|
94
|
-
queries were smoke-checked locally on Darwin 25.5.0 on 2026-07-23. The
|
|
95
|
-
script never requests the full system profile.
|
|
96
|
-
|
|
97
|
-
## Slurm
|
|
98
|
-
|
|
99
|
-
- [Slurm `sbatch`](https://slurm.schedmd.com/sbatch.html) — living SchedMD
|
|
100
|
-
docs. Used for exact output environment-variable scopes:
|
|
101
|
-
`SLURM_CPUS_ON_NODE`, `SLURM_CPUS_PER_TASK`,
|
|
102
|
-
`SLURM_JOB_CPUS_PER_NODE`, `SLURM_MEM_PER_CPU`,
|
|
103
|
-
`SLURM_MEM_PER_NODE`, `SLURM_NTASKS`, and GPU variables. Also used for
|
|
104
|
-
the explicit warning that memory requests require configured enforcement.
|
|
105
|
-
- [Slurm CPU Management Guide](https://slurm.schedmd.com/cpu_management.html)
|
|
106
|
-
— living SchedMD docs. Used for `task/affinity`, `task/cgroup`,
|
|
107
|
-
`ConstrainCores`, binding, and logical CPU/core allocation examples.
|
|
108
|
-
- [Slurm `srun`](https://slurm.schedmd.com/srun.html) — updated
|
|
109
|
-
2026-07-14. Used for task confinement and GPU binding behavior.
|
|
110
|
-
- [Slurm `scontrol`](https://slurm.schedmd.com/scontrol.html) — living docs.
|
|
111
|
-
Used for the read-only `scontrol show job` interpretation workflow.
|
|
112
|
-
- [Slurm `sstat`](https://slurm.schedmd.com/sstat.html) — living docs. Used
|
|
113
|
-
for post-launch job-step accounting semantics.
|
|
114
|
-
|
|
115
|
-
## Windows
|
|
116
|
-
|
|
117
|
-
- [Microsoft: Processor Groups](https://learn.microsoft.com/en-us/windows/win32/procthread/processor-groups)
|
|
118
|
-
— living Microsoft docs. Used for the distinction between system logical
|
|
119
|
-
processors, physical cores, and processor-group scheduling.
|
|
120
|
-
- [GetLogicalProcessorInformation](https://learn.microsoft.com/en-us/windows/win32/api/sysinfoapi/nf-sysinfoapi-getlogicalprocessorinformation)
|
|
121
|
-
— living Microsoft docs. Used for logical/physical relationships and the
|
|
122
|
-
current-group limitation on systems over 64 logical processors.
|
|
123
|
-
- [GetLogicalProcessorInformationEx](https://learn.microsoft.com/en-us/windows/win32/api/sysinfoapi/nf-sysinfoapi-getlogicalprocessorinformationex)
|
|
124
|
-
— page dated 2023-03-06. Used for system-wide processor-group topology.
|
|
@@ -1,190 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env python3
|
|
2
|
-
"""Shared, dependency-free safety and JSON helpers."""
|
|
3
|
-
|
|
4
|
-
from __future__ import annotations
|
|
5
|
-
|
|
6
|
-
import argparse
|
|
7
|
-
import json
|
|
8
|
-
import math
|
|
9
|
-
import os
|
|
10
|
-
import stat
|
|
11
|
-
import sys
|
|
12
|
-
from pathlib import Path
|
|
13
|
-
from typing import Any
|
|
14
|
-
|
|
15
|
-
SCHEMA_VERSION = "1.1"
|
|
16
|
-
MAX_SNAPSHOT_BYTES = 1_048_576
|
|
17
|
-
MAX_WORKERS = 1_024
|
|
18
|
-
MAX_TASKS = 1_000_000_000
|
|
19
|
-
MAX_BYTES = 1 << 63
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
class ResourceToolError(ValueError):
|
|
23
|
-
"""A concise, user-safe CLI error."""
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
def json_text(value: Any) -> str:
|
|
27
|
-
"""Serialize deterministic, standards-compliant JSON."""
|
|
28
|
-
try:
|
|
29
|
-
return (
|
|
30
|
-
json.dumps(
|
|
31
|
-
value,
|
|
32
|
-
allow_nan=False,
|
|
33
|
-
ensure_ascii=False,
|
|
34
|
-
indent=2,
|
|
35
|
-
sort_keys=True,
|
|
36
|
-
)
|
|
37
|
-
+ "\n"
|
|
38
|
-
)
|
|
39
|
-
except (RecursionError, TypeError, ValueError) as exc:
|
|
40
|
-
raise ResourceToolError("result is not valid JSON data") from exc
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
def _safe_output_path(raw: str) -> Path:
|
|
44
|
-
"""Restrict writes to one explicit JSON filename in the current directory."""
|
|
45
|
-
if not raw or len(raw) > 255:
|
|
46
|
-
raise ResourceToolError("output must be a short JSON filename")
|
|
47
|
-
candidate = Path(raw)
|
|
48
|
-
if candidate.is_absolute() or len(candidate.parts) != 1:
|
|
49
|
-
raise ResourceToolError(
|
|
50
|
-
"output must be a filename in the current directory, not a path"
|
|
51
|
-
)
|
|
52
|
-
if candidate.name in {".", ".."} or candidate.suffix.lower() != ".json":
|
|
53
|
-
raise ResourceToolError("output filename must end in .json")
|
|
54
|
-
return Path.cwd() / candidate.name
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
def emit_json(value: Any, output: str | None = None, *, force: bool = False) -> None:
|
|
58
|
-
"""Write JSON to stdout or an explicit private local file."""
|
|
59
|
-
payload = json_text(value)
|
|
60
|
-
if output is None:
|
|
61
|
-
sys.stdout.write(payload)
|
|
62
|
-
return
|
|
63
|
-
|
|
64
|
-
destination = _safe_output_path(output)
|
|
65
|
-
try:
|
|
66
|
-
if destination.is_symlink():
|
|
67
|
-
raise ResourceToolError("refusing to write through a symbolic link")
|
|
68
|
-
flags = os.O_WRONLY | os.O_CREAT
|
|
69
|
-
flags |= os.O_TRUNC if force else os.O_EXCL
|
|
70
|
-
if hasattr(os, "O_NOFOLLOW"):
|
|
71
|
-
flags |= os.O_NOFOLLOW
|
|
72
|
-
descriptor = os.open(destination, flags, 0o600)
|
|
73
|
-
try:
|
|
74
|
-
if hasattr(os, "fchmod"):
|
|
75
|
-
os.fchmod(descriptor, 0o600)
|
|
76
|
-
with os.fdopen(descriptor, "w", encoding="utf-8") as stream:
|
|
77
|
-
descriptor = -1
|
|
78
|
-
stream.write(payload)
|
|
79
|
-
stream.flush()
|
|
80
|
-
os.fsync(stream.fileno())
|
|
81
|
-
finally:
|
|
82
|
-
if descriptor >= 0:
|
|
83
|
-
os.close(descriptor)
|
|
84
|
-
except FileExistsError as exc:
|
|
85
|
-
raise ResourceToolError(
|
|
86
|
-
f"{destination.name} already exists; use --force to replace it"
|
|
87
|
-
) from exc
|
|
88
|
-
except OSError as exc:
|
|
89
|
-
raise ResourceToolError(
|
|
90
|
-
f"could not write the requested output file ({exc.__class__.__name__})"
|
|
91
|
-
) from exc
|
|
92
|
-
|
|
93
|
-
|
|
94
|
-
def read_json_file(raw: str) -> dict[str, Any]:
|
|
95
|
-
"""Read one bounded regular JSON file without following symlinks."""
|
|
96
|
-
path = Path(raw)
|
|
97
|
-
try:
|
|
98
|
-
if path.is_symlink():
|
|
99
|
-
raise ResourceToolError("refusing to read a symbolic link")
|
|
100
|
-
info = path.stat()
|
|
101
|
-
if not stat.S_ISREG(info.st_mode):
|
|
102
|
-
raise ResourceToolError("snapshot input must be a regular file")
|
|
103
|
-
if info.st_size > MAX_SNAPSHOT_BYTES:
|
|
104
|
-
raise ResourceToolError(
|
|
105
|
-
f"snapshot input exceeds {MAX_SNAPSHOT_BYTES} bytes"
|
|
106
|
-
)
|
|
107
|
-
with path.open("rb") as stream:
|
|
108
|
-
payload = stream.read(MAX_SNAPSHOT_BYTES + 1)
|
|
109
|
-
if len(payload) > MAX_SNAPSHOT_BYTES:
|
|
110
|
-
raise ResourceToolError(
|
|
111
|
-
f"snapshot input exceeds {MAX_SNAPSHOT_BYTES} bytes"
|
|
112
|
-
)
|
|
113
|
-
except ResourceToolError:
|
|
114
|
-
raise
|
|
115
|
-
except OSError as exc:
|
|
116
|
-
raise ResourceToolError(
|
|
117
|
-
f"could not read snapshot ({exc.__class__.__name__})"
|
|
118
|
-
) from exc
|
|
119
|
-
try:
|
|
120
|
-
parsed = json.loads(payload)
|
|
121
|
-
except (RecursionError, UnicodeDecodeError, json.JSONDecodeError) as exc:
|
|
122
|
-
raise ResourceToolError("snapshot is not valid UTF-8 JSON") from exc
|
|
123
|
-
if not isinstance(parsed, dict):
|
|
124
|
-
raise ResourceToolError("snapshot JSON root must be an object")
|
|
125
|
-
return parsed
|
|
126
|
-
|
|
127
|
-
|
|
128
|
-
def bounded_int(
|
|
129
|
-
value: Any,
|
|
130
|
-
*,
|
|
131
|
-
minimum: int = 0,
|
|
132
|
-
maximum: int = MAX_BYTES,
|
|
133
|
-
) -> int | None:
|
|
134
|
-
"""Return a bounded integer without accepting booleans or floats."""
|
|
135
|
-
if isinstance(value, bool):
|
|
136
|
-
return None
|
|
137
|
-
if isinstance(value, int) and minimum <= value <= maximum:
|
|
138
|
-
return value
|
|
139
|
-
return None
|
|
140
|
-
|
|
141
|
-
|
|
142
|
-
def bounded_number(
|
|
143
|
-
value: Any,
|
|
144
|
-
*,
|
|
145
|
-
minimum: float = 0.0,
|
|
146
|
-
maximum: float = float(MAX_BYTES),
|
|
147
|
-
) -> float | None:
|
|
148
|
-
"""Return a finite bounded number without accepting booleans."""
|
|
149
|
-
if isinstance(value, bool) or not isinstance(value, (int, float)):
|
|
150
|
-
return None
|
|
151
|
-
number = float(value)
|
|
152
|
-
if not math.isfinite(number) or not minimum <= number <= maximum:
|
|
153
|
-
return None
|
|
154
|
-
return number
|
|
155
|
-
|
|
156
|
-
|
|
157
|
-
def argparse_positive_int(
|
|
158
|
-
value: str,
|
|
159
|
-
*,
|
|
160
|
-
maximum: int = MAX_TASKS,
|
|
161
|
-
) -> int:
|
|
162
|
-
"""Argparse converter for bounded positive integers."""
|
|
163
|
-
try:
|
|
164
|
-
parsed = int(value, 10)
|
|
165
|
-
except ValueError as exc:
|
|
166
|
-
raise argparse.ArgumentTypeError("must be an integer") from exc
|
|
167
|
-
if not 1 <= parsed <= maximum:
|
|
168
|
-
raise argparse.ArgumentTypeError(f"must be between 1 and {maximum}")
|
|
169
|
-
return parsed
|
|
170
|
-
|
|
171
|
-
|
|
172
|
-
def argparse_nonnegative_int(
|
|
173
|
-
value: str,
|
|
174
|
-
*,
|
|
175
|
-
maximum: int = MAX_BYTES,
|
|
176
|
-
) -> int:
|
|
177
|
-
"""Argparse converter for bounded nonnegative integers."""
|
|
178
|
-
try:
|
|
179
|
-
parsed = int(value, 10)
|
|
180
|
-
except ValueError as exc:
|
|
181
|
-
raise argparse.ArgumentTypeError("must be an integer") from exc
|
|
182
|
-
if not 0 <= parsed <= maximum:
|
|
183
|
-
raise argparse.ArgumentTypeError(f"must be between 0 and {maximum}")
|
|
184
|
-
return parsed
|
|
185
|
-
|
|
186
|
-
|
|
187
|
-
def cli_error(parser: argparse.ArgumentParser, exc: Exception) -> int:
|
|
188
|
-
"""Print one safe CLI error without a traceback."""
|
|
189
|
-
parser.exit(2, f"{parser.prog}: error: {exc}\n")
|
|
190
|
-
return 2
|