@pikaa-ai/pikaa 0.3.1 โ 0.3.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cli.js +1169 -601
- package/dist/index.js +525 -204
- package/package.json +5 -3
- package/skills/adaptyv/references/api-endpoints.md +0 -690
- package/skills/aeon/references/anomaly_detection.md +0 -154
- package/skills/aeon/references/classification.md +0 -144
- package/skills/aeon/references/clustering.md +0 -123
- package/skills/aeon/references/datasets_benchmarking.md +0 -392
- package/skills/aeon/references/distances.md +0 -256
- package/skills/aeon/references/forecasting.md +0 -109
- package/skills/aeon/references/networks.md +0 -289
- package/skills/aeon/references/regression.md +0 -118
- package/skills/aeon/references/segmentation.md +0 -163
- package/skills/aeon/references/similarity_search.md +0 -187
- package/skills/aeon/references/transformations.md +0 -246
- package/skills/analytical-method-validation/assets/validation-protocol-template.md +0 -106
- package/skills/analytical-method-validation/assets/validation-report-template.md +0 -116
- package/skills/analytical-method-validation/references/compendial-and-clsi.md +0 -96
- package/skills/analytical-method-validation/references/framework-selection.md +0 -87
- package/skills/analytical-method-validation/references/ich-m10-bioanalytical.md +0 -123
- package/skills/analytical-method-validation/references/ich-q2r2.md +0 -229
- package/skills/analytical-method-validation/references/source-ledger.md +0 -125
- package/skills/analytical-method-validation/references/statistics.md +0 -209
- package/skills/analytical-method-validation/scripts/_catalog.py +0 -499
- package/skills/analytical-method-validation/scripts/_common.py +0 -955
- package/skills/analytical-method-validation/scripts/check_accuracy_precision.py +0 -328
- package/skills/analytical-method-validation/scripts/check_bioanalytical_run.py +0 -293
- package/skills/analytical-method-validation/scripts/check_detection_limits.py +0 -310
- package/skills/analytical-method-validation/scripts/check_response.py +0 -243
- package/skills/analytical-method-validation/scripts/compare_methods.py +0 -215
- package/skills/analytical-method-validation/scripts/plan_validation.py +0 -381
- package/skills/anndata/references/best_practices.md +0 -532
- package/skills/anndata/references/concatenation.md +0 -399
- package/skills/anndata/references/data_structure.md +0 -314
- package/skills/anndata/references/io_operations.md +0 -466
- package/skills/anndata/references/manipulation.md +0 -516
- package/skills/arbor/references/arbor-upstream.md +0 -91
- package/skills/arbor/references/executor-brief.md +0 -68
- package/skills/arbor/references/htr-methodology.md +0 -177
- package/skills/arbor/references/report-template.md +0 -39
- package/skills/arbor/scripts/tree.py +0 -564
- package/skills/arboreto/references/algorithms.md +0 -152
- package/skills/arboreto/references/basic_inference.md +0 -181
- package/skills/arboreto/references/distributed_computing.md +0 -242
- package/skills/arboreto/scripts/basic_grn_inference.py +0 -107
- package/skills/astropy/references/coordinates.md +0 -280
- package/skills/astropy/references/cosmology.md +0 -309
- package/skills/astropy/references/fits.md +0 -398
- package/skills/astropy/references/tables.md +0 -495
- package/skills/astropy/references/time.md +0 -412
- package/skills/astropy/references/units.md +0 -178
- package/skills/astropy/references/wcs_and_other_modules.md +0 -377
- package/skills/autoskill/config.yaml +0 -53
- package/skills/autoskill/references/https-proxy.md +0 -62
- package/skills/autoskill/references/screenpipe-config.yaml +0 -61
- package/skills/autoskill/scripts/autoskill.py +0 -35
- package/skills/autoskill/scripts/backends.py +0 -116
- package/skills/autoskill/scripts/cluster.py +0 -54
- package/skills/autoskill/scripts/doctor.py +0 -108
- package/skills/autoskill/scripts/fetch_window.py +0 -33
- package/skills/autoskill/scripts/match_skills.py +0 -46
- package/skills/autoskill/scripts/promote.py +0 -58
- package/skills/autoskill/scripts/redact.py +0 -40
- package/skills/autoskill/scripts/run.py +0 -194
- package/skills/autoskill/scripts/synthesize.py +0 -72
- package/skills/benchling-integration/references/api_endpoints.md +0 -883
- package/skills/benchling-integration/references/authentication.md +0 -390
- package/skills/benchling-integration/references/core_capabilities.md +0 -355
- package/skills/benchling-integration/references/eventbridge.md +0 -255
- package/skills/benchling-integration/references/sdk_reference.md +0 -772
- package/skills/bids/references/beps.yml +0 -637
- package/skills/bids/references/bids_schema.json +0 -21015
- package/skills/bids/references/bids_specification.md +0 -165
- package/skills/bids/references/conversion_tools.md +0 -475
- package/skills/bids/references/core_workflows.md +0 -552
- package/skills/bids/references/metadata_fields.md +0 -365
- package/skills/bids/scripts/update_schema.py +0 -89
- package/skills/biopython/references/advanced.md +0 -580
- package/skills/biopython/references/alignment.md +0 -377
- package/skills/biopython/references/blast.md +0 -463
- package/skills/biopython/references/databases.md +0 -492
- package/skills/biopython/references/phylogenetics.md +0 -566
- package/skills/biopython/references/sequence_io.md +0 -289
- package/skills/biopython/references/structure.md +0 -564
- package/skills/bioservices/references/identifier_mapping.md +0 -685
- package/skills/bioservices/references/services_reference.md +0 -638
- package/skills/bioservices/references/workflow_patterns.md +0 -813
- package/skills/bioservices/scripts/batch_id_converter.py +0 -347
- package/skills/bioservices/scripts/compound_cross_reference.py +0 -387
- package/skills/bioservices/scripts/pathway_analysis.py +0 -309
- package/skills/bioservices/scripts/protein_analysis_workflow.py +0 -441
- package/skills/bulk-rnaseq/references/counts-and-handoff.md +0 -91
- package/skills/bulk-rnaseq/references/design-and-qc.md +0 -68
- package/skills/bulk-rnaseq/references/upstream-manual.md +0 -128
- package/skills/bulk-rnaseq/references/upstream-nfcore.md +0 -108
- package/skills/bulk-rnaseq/scripts/build_counts_matrix.py +0 -203
- package/skills/bulk-rnaseq/scripts/validate_samplesheet.py +0 -206
- package/skills/cellxgene-census/references/census_schema.md +0 -218
- package/skills/cellxgene-census/references/common_patterns.md +0 -368
- package/skills/cellxgene-census/references/core_workflow_patterns.md +0 -297
- package/skills/cirq/references/building.md +0 -307
- package/skills/cirq/references/experiments.md +0 -572
- package/skills/cirq/references/hardware.md +0 -527
- package/skills/cirq/references/noise.md +0 -514
- package/skills/cirq/references/simulation.md +0 -353
- package/skills/cirq/references/transformation.md +0 -416
- package/skills/citation-management/assets/bibtex_template.bib +0 -264
- package/skills/citation-management/assets/citation_checklist.md +0 -386
- package/skills/citation-management/references/best_practices.md +0 -91
- package/skills/citation-management/references/bibtex_formatting.md +0 -908
- package/skills/citation-management/references/citation_validation.md +0 -835
- package/skills/citation-management/references/core_workflow.md +0 -569
- package/skills/citation-management/references/example_workflows.md +0 -126
- package/skills/citation-management/references/google_scholar_search.md +0 -732
- package/skills/citation-management/references/metadata_extraction.md +0 -870
- package/skills/citation-management/references/pubmed_search.md +0 -839
- package/skills/citation-management/references/script_reference.md +0 -250
- package/skills/citation-management/references/search_strategies.md +0 -110
- package/skills/citation-management/scripts/_common.py +0 -331
- package/skills/citation-management/scripts/doi_to_bibtex.py +0 -204
- package/skills/citation-management/scripts/extract_metadata.py +0 -690
- package/skills/citation-management/scripts/format_bibtex.py +0 -356
- package/skills/citation-management/scripts/search_google_scholar.py +0 -268
- package/skills/citation-management/scripts/search_openalex.py +0 -297
- package/skills/citation-management/scripts/search_pubmed.py +0 -419
- package/skills/citation-management/scripts/validate_citations.py +0 -688
- package/skills/clinical-decision-support/assets/aggregate_cohort_table_template.json +0 -114
- package/skills/clinical-decision-support/assets/aggregate_model_evaluation_template.json +0 -115
- package/skills/clinical-decision-support/assets/artifact_intended_use_template.json +0 -81
- package/skills/clinical-decision-support/assets/decision_logic_traceability_template.json +0 -108
- package/skills/clinical-decision-support/assets/deidentification_checklist_template.json +0 -176
- package/skills/clinical-decision-support/assets/evidence_profile_template.json +0 -139
- package/skills/clinical-decision-support/assets/survival_analysis_plan_template.json +0 -134
- package/skills/clinical-decision-support/references/cohort_evaluation.md +0 -142
- package/skills/clinical-decision-support/references/decision_logic_traceability.md +0 -146
- package/skills/clinical-decision-support/references/evidence_profiles.md +0 -153
- package/skills/clinical-decision-support/references/model_biomarker_evaluation.md +0 -152
- package/skills/clinical-decision-support/references/privacy_and_disclosure.md +0 -144
- package/skills/clinical-decision-support/references/regulatory_and_governance.md +0 -104
- package/skills/clinical-decision-support/references/safety_and_scope.md +0 -103
- package/skills/clinical-decision-support/references/security_validation.md +0 -60
- package/skills/clinical-decision-support/references/sources.md +0 -119
- package/skills/clinical-decision-support/references/study_reporting.md +0 -134
- package/skills/clinical-decision-support/references/survival_analysis.md +0 -156
- package/skills/clinical-decision-support/scripts/_common.py +0 -223
- package/skills/clinical-decision-support/scripts/cohort_table_generator.py +0 -288
- package/skills/clinical-decision-support/scripts/decision_logic_traceability.py +0 -313
- package/skills/clinical-decision-support/scripts/deidentification_checklist.py +0 -260
- package/skills/clinical-decision-support/scripts/evidence_profile_check.py +0 -259
- package/skills/clinical-decision-support/scripts/model_biomarker_evaluation.py +0 -345
- package/skills/clinical-decision-support/scripts/survival_plan_validator.py +0 -294
- package/skills/clinical-decision-support/scripts/validate_cds_artifact.py +0 -269
- package/skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv +0 -1
- package/skills/clinical-reports/assets/case_report_template.json +0 -43
- package/skills/clinical-reports/assets/clinical_trial_csr_template.json +0 -51
- package/skills/clinical-reports/assets/clinical_trial_results_template.json +0 -66
- package/skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json +0 -49
- package/skills/clinical-reports/assets/consistency_manifest_template.json +0 -15
- package/skills/clinical-reports/assets/deidentification_process_checklist.json +0 -56
- package/skills/clinical-reports/assets/lab_report_template.json +0 -36
- package/skills/clinical-reports/assets/pathology_report_template.json +0 -36
- package/skills/clinical-reports/assets/provenance_manifest_template.json +0 -17
- package/skills/clinical-reports/assets/quality_review_checklist.json +0 -34
- package/skills/clinical-reports/assets/radiology_report_template.json +0 -34
- package/skills/clinical-reports/assets/research_summary_template.json +0 -36
- package/skills/clinical-reports/assets/terminology_manifest_template.json +0 -11
- package/skills/clinical-reports/assets/trial_protocol_reporting_checklist.json +0 -70
- package/skills/clinical-reports/references/case_report_guidelines.md +0 -72
- package/skills/clinical-reports/references/clinical_trial_reporting.md +0 -97
- package/skills/clinical-reports/references/data_presentation.md +0 -92
- package/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -76
- package/skills/clinical-reports/references/medical_terminology.md +0 -84
- package/skills/clinical-reports/references/privacy_and_deidentification.md +0 -84
- package/skills/clinical-reports/references/professional_review.md +0 -78
- package/skills/clinical-reports/references/report_type_routing.md +0 -57
- package/skills/clinical-reports/references/safety_reporting.md +0 -109
- package/skills/clinical-reports/references/sources.md +0 -75
- package/skills/clinical-reports/scripts/_common.py +0 -263
- package/skills/clinical-reports/scripts/check_deidentification.py +0 -298
- package/skills/clinical-reports/scripts/consistency_checker.py +0 -390
- package/skills/clinical-reports/scripts/format_adverse_events.py +0 -455
- package/skills/clinical-reports/scripts/generate_report_template.py +0 -115
- package/skills/clinical-reports/scripts/provenance_validator.py +0 -263
- package/skills/clinical-reports/scripts/terminology_validator.py +0 -277
- package/skills/clinical-reports/scripts/validate_case_report.py +0 -278
- package/skills/clinical-reports/scripts/validate_trial_report.py +0 -534
- package/skills/cobrapy/references/api_quick_reference.md +0 -665
- package/skills/cobrapy/references/workflows.md +0 -600
- package/skills/consciousness-council/references/advanced-configurations.md +0 -96
- package/skills/dask/references/arrays.md +0 -495
- package/skills/dask/references/bags.md +0 -468
- package/skills/dask/references/best-practices.md +0 -277
- package/skills/dask/references/dataframes.md +0 -370
- package/skills/dask/references/futures.md +0 -541
- package/skills/dask/references/schedulers.md +0 -517
- package/skills/database-lookup/references/addgene.md +0 -38
- package/skills/database-lookup/references/alphafold.md +0 -52
- package/skills/database-lookup/references/alphavantage.md +0 -261
- package/skills/database-lookup/references/bea.md +0 -409
- package/skills/database-lookup/references/bindingdb.md +0 -85
- package/skills/database-lookup/references/biogrid.md +0 -110
- package/skills/database-lookup/references/bls.md +0 -235
- package/skills/database-lookup/references/brenda.md +0 -71
- package/skills/database-lookup/references/cbioportal.md +0 -206
- package/skills/database-lookup/references/census.md +0 -251
- package/skills/database-lookup/references/chebi.md +0 -103
- package/skills/database-lookup/references/chembl.md +0 -80
- package/skills/database-lookup/references/clinicaltrials.md +0 -86
- package/skills/database-lookup/references/clinpgx.md +0 -64
- package/skills/database-lookup/references/clinvar.md +0 -91
- package/skills/database-lookup/references/cod.md +0 -121
- package/skills/database-lookup/references/cosmic.md +0 -59
- package/skills/database-lookup/references/dailymed.md +0 -65
- package/skills/database-lookup/references/database_selection_guide.md +0 -166
- package/skills/database-lookup/references/datacommons.md +0 -237
- package/skills/database-lookup/references/dbsnp.md +0 -143
- package/skills/database-lookup/references/disgenet.md +0 -52
- package/skills/database-lookup/references/drugbank.md +0 -54
- package/skills/database-lookup/references/ecb.md +0 -191
- package/skills/database-lookup/references/emdb.md +0 -37
- package/skills/database-lookup/references/ena.md +0 -372
- package/skills/database-lookup/references/encode.md +0 -47
- package/skills/database-lookup/references/ensembl.md +0 -539
- package/skills/database-lookup/references/epa.md +0 -232
- package/skills/database-lookup/references/eurostat.md +0 -237
- package/skills/database-lookup/references/fda.md +0 -64
- package/skills/database-lookup/references/federal-reserve.md +0 -216
- package/skills/database-lookup/references/fred.md +0 -297
- package/skills/database-lookup/references/gene-ontology.md +0 -147
- package/skills/database-lookup/references/geo.md +0 -130
- package/skills/database-lookup/references/gnomad.md +0 -93
- package/skills/database-lookup/references/gtex.md +0 -136
- package/skills/database-lookup/references/gwas-catalog.md +0 -46
- package/skills/database-lookup/references/hca.md +0 -35
- package/skills/database-lookup/references/hpo.md +0 -48
- package/skills/database-lookup/references/human-protein-atlas.md +0 -57
- package/skills/database-lookup/references/interpro.md +0 -120
- package/skills/database-lookup/references/jaspar.md +0 -50
- package/skills/database-lookup/references/kegg.md +0 -78
- package/skills/database-lookup/references/lincs-l1000.md +0 -68
- package/skills/database-lookup/references/materials-project.md +0 -123
- package/skills/database-lookup/references/metabolomics-workbench.md +0 -98
- package/skills/database-lookup/references/monarch.md +0 -46
- package/skills/database-lookup/references/mousemine.md +0 -40
- package/skills/database-lookup/references/nasa-exoplanet-archive.md +0 -112
- package/skills/database-lookup/references/nasa.md +0 -121
- package/skills/database-lookup/references/ncbi-gene.md +0 -64
- package/skills/database-lookup/references/ncbi-protein.md +0 -104
- package/skills/database-lookup/references/ncbi-taxonomy.md +0 -121
- package/skills/database-lookup/references/nist.md +0 -105
- package/skills/database-lookup/references/noaa.md +0 -199
- package/skills/database-lookup/references/omim.md +0 -114
- package/skills/database-lookup/references/opentargets.md +0 -459
- package/skills/database-lookup/references/openweathermap.md +0 -255
- package/skills/database-lookup/references/pdb.md +0 -121
- package/skills/database-lookup/references/pride.md +0 -74
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- package/skills/database-lookup/references/quickgo.md +0 -45
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- package/skills/xlsx/scripts/office/schemas/microsoft/wml-cid-2016.xsd +0 -13
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-sdtdatahash-2020.xsd +0 -4
- package/skills/xlsx/scripts/office/schemas/microsoft/wml-symex-2015.xsd +0 -8
- package/skills/xlsx/scripts/office/soffice.py +0 -232
- package/skills/xlsx/scripts/office/validate.py +0 -173
- package/skills/xlsx/scripts/office/validators/__init__.py +0 -15
- package/skills/xlsx/scripts/office/validators/base.py +0 -875
- package/skills/xlsx/scripts/office/validators/docx.py +0 -466
- package/skills/xlsx/scripts/office/validators/pptx.py +0 -441
- package/skills/xlsx/scripts/office/validators/redlining.py +0 -299
- package/skills/xlsx/scripts/recalc.py +0 -308
- package/skills/zarr-python/references/api_reference.md +0 -162
- package/skills/zarr-python/references/chunking_and_compression.md +0 -138
- package/skills/zarr-python/references/integration.md +0 -147
- package/skills/zarr-python/references/performance_and_patterns.md +0 -198
- package/skills/zarr-python/references/storage_backends.md +0 -91
- package/skills/zarr-python/references/v3_migration.md +0 -127
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<!-- Source: https://github.com/SuperiorByteWorks-LLC/agent-project | License: Apache-2.0 | Author: Clayton Young / Superior Byte Works, LLC (Boreal Bytes) -->
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# Entity Relationship (ER) Diagram
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**Best for:** Database schemas, data models, entity relationships, API data structures
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## Exemplar Diagram
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erDiagram
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accTitle: Project Management Data Model
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accDescr: Entity relationships for a project management system showing teams, projects, tasks, members, and comments with cardinality
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TEAM ||--o{ PROJECT : "owns"
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uuid id PK "๐ Primary key"
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PROJECT {
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uuid id PK "๐ Primary key"
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uuid team_id FK "๐ Team reference"
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string title "๐ Project title"
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string status "๐ Current status"
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date deadline "โฐ Due date"
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}
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TASK {
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uuid id PK "๐ Primary key"
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uuid project_id FK "๐ Project reference"
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uuid assignee_id FK "๐ค Assigned member"
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string title "๐ Task title"
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string priority "โ ๏ธ Priority level"
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string status "๐ Current status"
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}
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MEMBER {
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uuid id PK "๐ Primary key"
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uuid team_id FK "๐ Team reference"
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string name "๐ค Full name"
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string email "๐ง Email address"
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string role "๐ท๏ธ Job role"
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}
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COMMENT {
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uuid id PK "๐ Primary key"
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uuid task_id FK "๐ Task reference"
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uuid author_id FK "๐ค Author reference"
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text body "๐ Comment text"
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timestamp created_at "โฐ Created time"
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}
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```
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---
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## Tips
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- Include data types, `PK`/`FK` annotations, and **comment strings** with emoji for context
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---
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## Template
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erDiagram
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ENTITY_A ||--o{ ENTITY_B : "has many"
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uuid id PK "๐ Primary key"
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string name "๐ Display name"
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string value "๐ Value field"
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---
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## Complex Example
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```mermaid
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erDiagram
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accTitle: SaaS Multi-Tenant Platform Schema
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TENANT ||--o{ ORGANIZATION : "contains"
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ORGANIZATION ||--o{ USER : "employs"
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ORGANIZATION ||--|| SUBSCRIPTION : "holds"
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USER }o--o{ ROLE : "assigned"
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USER ||--o{ AUDIT_LOG : "produces"
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USER ||--o{ API_KEY : "owns"
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TENANT {
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uuid id PK "๐ Primary key"
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string name "๐ข Tenant name"
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string subdomain "๐ Unique subdomain"
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string tier "๐ท๏ธ Service tier"
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boolean active "โ
Active status"
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timestamp created_at "โฐ Created time"
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}
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ORGANIZATION {
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uuid id PK "๐ Primary key"
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uuid tenant_id FK "๐ Tenant reference"
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string name "๐ฅ Org name"
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string billing_email "๐ง Billing contact"
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int seat_count "๐ Licensed seats"
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}
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USER {
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uuid id PK "๐ Primary key"
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uuid org_id FK "๐ Organization reference"
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string email "๐ง Login email"
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string display_name "๐ค Display name"
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string status "๐ Account status"
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timestamp last_login "โฐ Last active"
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}
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ROLE {
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uuid id PK "๐ Primary key"
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uuid tenant_id FK "๐ Tenant scope"
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string name "๐ท๏ธ Role name"
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string description "๐ Role purpose"
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boolean system_role "๐ Built-in flag"
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}
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PERMISSION {
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uuid id PK "๐ Primary key"
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uuid role_id FK "๐ Role reference"
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string resource "๐ฏ Target resource"
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string action "โ๏ธ Allowed action"
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string scope "๐ Permission scope"
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}
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PLAN {
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uuid id PK "๐ Primary key"
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string name "๐ท๏ธ Plan name"
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int price_cents "๐ฐ Monthly price"
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int seat_limit "๐ฅ Max seats"
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jsonb features "๐ Feature flags"
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boolean active "โ
Available flag"
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}
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SUBSCRIPTION {
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uuid id PK "๐ Primary key"
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uuid org_id FK "๐ Organization reference"
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uuid plan_id FK "๐ Plan reference"
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string status "๐ Sub status"
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date current_period_start "๐
Period start"
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date current_period_end "๐
Period end"
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}
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INVOICE {
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uuid id PK "๐ Primary key"
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uuid subscription_id FK "๐ Subscription reference"
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int amount_cents "๐ฐ Total amount"
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string currency "๐ฑ Currency code"
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string status "๐ Payment status"
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timestamp issued_at "โฐ Issue date"
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}
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AUDIT_LOG {
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uuid id PK "๐ Primary key"
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uuid tenant_id FK "๐ Tenant scope"
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uuid user_id FK "๐ค Acting user"
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string action "โ๏ธ Action performed"
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string resource_type "๐ฏ Target type"
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uuid resource_id "๐ Target ID"
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jsonb metadata "๐ Event details"
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timestamp created_at "โฐ Event time"
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}
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API_KEY {
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uuid id PK "๐ Primary key"
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uuid user_id FK "๐ค Owner"
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string prefix "๐ท๏ธ Key prefix"
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string hash "๐ Hashed secret"
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string name "๐ Key name"
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timestamp expires_at "โฐ Expiration"
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boolean revoked "โ Revoked flag"
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}
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```
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### Why this works
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- **10 entities organized by domain** โ identity (Tenant, Organization, User, Role, Permission), billing (Plan, Subscription, Invoice), and security (Audit Log, API Key). The relationship lines naturally cluster related entities together.
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- **Full cardinality tells the business rules** โ `||--||` (one-to-one) for Organization-Subscription means one subscription per org. `}o--o{` (many-to-many) for User-Role means flexible RBAC. Each relationship symbol encodes a constraint.
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- **Every field has type, annotation, and purpose** โ PK/FK for schema generation, emoji comments for human scanning. A developer can read this diagram and write the migration script directly.
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@@ -1,177 +0,0 @@
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<!-- Source: https://github.com/SuperiorByteWorks-LLC/agent-project | License: Apache-2.0 | Author: Clayton Young / Superior Byte Works, LLC (Boreal Bytes) -->
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# Flowchart
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> **Back to [Style Guide](../mermaid_style_guide.md)** โ Read the style guide first for emoji, color, and accessibility rules.
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**Syntax keyword:** `flowchart`
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**Best for:** Sequential processes, workflows, decision logic, troubleshooting trees
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**When NOT to use:** Complex timing between actors (use [Sequence](sequence.md)), state machines (use [State](state.md))
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---
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## Exemplar Diagram
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```mermaid
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flowchart TB
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accTitle: Feature Development Lifecycle
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accDescr: End-to-end feature flow from idea through design, build, test, review, and release with a revision loop on failed reviews
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idea([๐ก Feature idea]) --> spec[๐ Write spec]
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spec --> design[๐จ Design solution]
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design --> build[๐ง Implement]
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build --> test[๐งช Run tests]
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test --> review{๐ Review passed?}
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review -->|Yes| release[๐ Release to prod]
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review -->|No| revise[โ๏ธ Revise code]
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revise --> test
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release --> monitor([๐ Monitor metrics])
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classDef start fill:#ede9fe,stroke:#7c3aed,stroke-width:2px,color:#3b0764
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classDef process fill:#dbeafe,stroke:#2563eb,stroke-width:2px,color:#1e3a5f
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classDef decision fill:#fef9c3,stroke:#ca8a04,stroke-width:2px,color:#713f12
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classDef success fill:#dcfce7,stroke:#16a34a,stroke-width:2px,color:#14532d
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class idea,monitor start
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class spec,design,build,test,revise process
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class review decision
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class release success
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```
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|
|
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---
|
|
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## Tips
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- Use `TB` (top-to-bottom) for processes, `LR` (left-to-right) for pipelines
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- Rounded rectangles `([text])` for start/end, diamonds `{text}` for decisions
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- Max 10 nodes โ split larger flows into "Phase 1" / "Phase 2" diagrams
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- Max 3 decision points per diagram
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- Edge labels should be 1โ4 words: `-->|Yes|`, `-->|All green|`
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|
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- Use `classDef` for **semantic** coloring โ decisions in amber, success in green, actions in blue
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## Subgraph Pattern
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When you need grouped stages:
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|
-
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```mermaid
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flowchart TB
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accTitle: CI/CD Pipeline Stages
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accDescr: Three-stage pipeline grouping code quality checks, testing, and deployment into distinct phases
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trigger([โก Push to main])
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subgraph quality ["๐ Code Quality"]
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lint[๐ Lint code] --> format[โ๏ธ Check formatting]
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end
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subgraph testing ["๐งช Testing"]
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unit[๐งช Unit tests] --> integration[๐ Integration tests]
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end
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subgraph deploy ["๐ Deployment"]
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build[๐ฆ Build artifacts] --> ship[โ๏ธ Deploy to staging]
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end
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trigger --> quality
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quality --> testing
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testing --> deploy
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deploy --> done([โ
Pipeline complete])
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classDef trigger_style fill:#ede9fe,stroke:#7c3aed,stroke-width:2px,color:#3b0764
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classDef success fill:#dcfce7,stroke:#16a34a,stroke-width:2px,color:#14532d
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83
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class trigger trigger_style
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class done success
|
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-
```
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-
---
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|
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## Template
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-
|
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91
|
-
```mermaid
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|
-
flowchart TB
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93
|
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accTitle: Your Title Here (3-8 words)
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94
|
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accDescr: One or two sentences explaining what this diagram shows and what insight the reader gains
|
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95
|
-
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start([๐ Starting point]) --> step1[โ๏ธ First action]
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step1 --> decision{๐ Check condition?}
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decision -->|Yes| step2[โ
Positive path]
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decision -->|No| step3[๐ง Alternative path]
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step2 --> done([๐ Complete])
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step3 --> done
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```
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-
---
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## Complex Example
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|
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A 20+ node e-commerce order pipeline organized into 5 subgraphs, each representing a processing phase. Subgraphs connect through internal nodes, decision points route orders to exception handling, and color classes distinguish phases at a glance.
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-
|
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110
|
-
```mermaid
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111
|
-
flowchart TB
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|
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accTitle: E-Commerce Order Processing Pipeline
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|
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accDescr: Full order lifecycle from intake through fulfillment, shipping, and notification with exception handling paths for payment failures, stockouts, and delivery issues
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order_in([๐ฅ New order]) --> validate_pay{๐ฐ Payment valid?}
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subgraph intake ["๐ฅ Order Intake"]
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validate_pay -->|Yes| check_fraud{๐ Fraud check}
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validate_pay -->|No| pay_fail[โ Payment **declined**]
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check_fraud -->|Clear| check_stock{๐ฆ In stock?}
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check_fraud -->|Flagged| manual_review[๐ Manual **review**]
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|
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manual_review --> check_stock
|
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|
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end
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|
-
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|
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subgraph fulfill ["๐ฆ Fulfillment"]
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|
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pick[๐ **Pick** items] --> pack[๐ฆ Pack order]
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pack --> label[๐ท๏ธ Generate **shipping** label]
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|
-
end
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|
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subgraph ship ["๐ Shipping"]
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|
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handoff[๐ Carrier **handoff**] --> transit[๐ In transit]
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|
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transit --> deliver{โ
Delivered?}
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|
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end
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|
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subgraph notify ["๐ค Notifications"]
|
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|
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confirm_email[๐ง Order **confirmed**]
|
|
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|
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ship_update[๐ง Shipping **update**]
|
|
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|
-
deliver_email[๐ง Delivery **confirmed**]
|
|
139
|
-
end
|
|
140
|
-
|
|
141
|
-
subgraph exception ["โ ๏ธ Exception Handling"]
|
|
142
|
-
pay_fail --> retry_pay[๐ Retry payment]
|
|
143
|
-
retry_pay --> validate_pay
|
|
144
|
-
out_of_stock[๐ฆ **Backorder** created]
|
|
145
|
-
deliver_fail[๐ **Reattempt** delivery]
|
|
146
|
-
end
|
|
147
|
-
|
|
148
|
-
check_stock -->|Yes| pick
|
|
149
|
-
check_stock -->|No| out_of_stock
|
|
150
|
-
label --> handoff
|
|
151
|
-
deliver -->|Yes| deliver_email
|
|
152
|
-
deliver -->|No| deliver_fail
|
|
153
|
-
deliver_fail --> transit
|
|
154
|
-
|
|
155
|
-
check_stock -->|Yes| confirm_email
|
|
156
|
-
handoff --> ship_update
|
|
157
|
-
deliver_email --> complete([โ
Order **complete**])
|
|
158
|
-
|
|
159
|
-
classDef intake_style fill:#dbeafe,stroke:#2563eb,stroke-width:2px,color:#1e3a5f
|
|
160
|
-
classDef fulfill_style fill:#ede9fe,stroke:#7c3aed,stroke-width:2px,color:#3b0764
|
|
161
|
-
classDef ship_style fill:#dcfce7,stroke:#16a34a,stroke-width:2px,color:#14532d
|
|
162
|
-
classDef warn_style fill:#fef9c3,stroke:#ca8a04,stroke-width:2px,color:#713f12
|
|
163
|
-
classDef danger_style fill:#fee2e2,stroke:#dc2626,stroke-width:2px,color:#7f1d1d
|
|
164
|
-
|
|
165
|
-
class validate_pay,check_fraud,check_stock,manual_review intake_style
|
|
166
|
-
class pick,pack,label fulfill_style
|
|
167
|
-
class handoff,transit,deliver ship_style
|
|
168
|
-
class confirm_email,ship_update,deliver_email warn_style
|
|
169
|
-
class pay_fail,retry_pay,out_of_stock,deliver_fail danger_style
|
|
170
|
-
```
|
|
171
|
-
|
|
172
|
-
### Why this works
|
|
173
|
-
|
|
174
|
-
- **5 subgraphs map to real business phases** โ intake, fulfillment, shipping, notification, and exceptions are how operations teams actually think about orders
|
|
175
|
-
- **Exception handling is its own subgraph** โ not scattered across phases. Agents and readers can see all failure paths in one place
|
|
176
|
-
- **Color classes reinforce structure** โ blue for intake, purple for fulfillment, green for shipping, amber for notifications, red for exceptions. Even without reading labels, the color pattern tells you which phase you're looking at
|
|
177
|
-
- **Decisions route between subgraphs** โ the diamonds (`{Payment valid?}`, `{In stock?}`, `{Delivered?}`) are the points where flow branches, and each branch leads to a clearly-labeled destination
|
|
@@ -1,138 +0,0 @@
|
|
|
1
|
-
<!-- Source: https://github.com/SuperiorByteWorks-LLC/agent-project | License: Apache-2.0 | Author: Clayton Young / Superior Byte Works, LLC (Boreal Bytes) -->
|
|
2
|
-
|
|
3
|
-
# Gantt Chart
|
|
4
|
-
|
|
5
|
-
> **Back to [Style Guide](../mermaid_style_guide.md)** โ Read the style guide first for emoji, color, and accessibility rules.
|
|
6
|
-
|
|
7
|
-
**Syntax keyword:** `gantt`
|
|
8
|
-
**Best for:** Project timelines, roadmaps, phase planning, milestone tracking, task dependencies
|
|
9
|
-
**When NOT to use:** Simple chronological events (use [Timeline](timeline.md)), process logic (use [Flowchart](flowchart.md))
|
|
10
|
-
|
|
11
|
-
---
|
|
12
|
-
|
|
13
|
-
## Exemplar Diagram
|
|
14
|
-
|
|
15
|
-
```mermaid
|
|
16
|
-
gantt
|
|
17
|
-
accTitle: Q1 Product Launch Roadmap
|
|
18
|
-
accDescr: Eight-week project timeline across discovery, design, build, and launch phases with milestones for design review and go/no-go decision
|
|
19
|
-
|
|
20
|
-
title ๐ Q1 Product Launch Roadmap
|
|
21
|
-
dateFormat YYYY-MM-DD
|
|
22
|
-
axisFormat %b %d
|
|
23
|
-
|
|
24
|
-
section ๐ Discovery
|
|
25
|
-
User research :done, research, 2026-01-05, 7d
|
|
26
|
-
Competitive analysis :done, compete, 2026-01-05, 5d
|
|
27
|
-
Requirements doc :done, reqs, after compete, 3d
|
|
28
|
-
|
|
29
|
-
section ๐จ Design
|
|
30
|
-
Wireframes :done, wire, after reqs, 5d
|
|
31
|
-
Visual design :active, visual, after wire, 7d
|
|
32
|
-
๐ Design review :milestone, review, after visual, 0d
|
|
33
|
-
|
|
34
|
-
section ๐ง Build
|
|
35
|
-
Core features :crit, core, after visual, 10d
|
|
36
|
-
API integration :api, after visual, 8d
|
|
37
|
-
Testing :test, after core, 5d
|
|
38
|
-
|
|
39
|
-
section ๐ Launch
|
|
40
|
-
Staging deploy :staging, after test, 3d
|
|
41
|
-
๐ Go / no-go :milestone, decision, after staging, 0d
|
|
42
|
-
Production release :crit, release, after staging, 2d
|
|
43
|
-
```
|
|
44
|
-
|
|
45
|
-
---
|
|
46
|
-
|
|
47
|
-
## Tips
|
|
48
|
-
|
|
49
|
-
- Use `section` with emoji prefix to group by phase or team
|
|
50
|
-
- Mark milestones with `:milestone` and `0d` duration โ prefix with ๐
|
|
51
|
-
- Status tags: `:done`, `:active`, `:crit` (critical path, highlighted)
|
|
52
|
-
- Use `after taskId` for dependencies
|
|
53
|
-
- Keep total timeline **under 3 months** for readability
|
|
54
|
-
- Use `axisFormat` to control date display (`%b %d` = "Jan 05", `%m/%d` = "01/05")
|
|
55
|
-
|
|
56
|
-
---
|
|
57
|
-
|
|
58
|
-
## Template
|
|
59
|
-
|
|
60
|
-
```mermaid
|
|
61
|
-
gantt
|
|
62
|
-
accTitle: Your Title Here
|
|
63
|
-
accDescr: Describe the timeline scope and key milestones
|
|
64
|
-
|
|
65
|
-
title ๐ Your Roadmap Title
|
|
66
|
-
dateFormat YYYY-MM-DD
|
|
67
|
-
axisFormat %b %d
|
|
68
|
-
|
|
69
|
-
section ๐ Phase 1
|
|
70
|
-
Task one :done, t1, 2026-01-01, 5d
|
|
71
|
-
Task two :active, t2, after t1, 3d
|
|
72
|
-
|
|
73
|
-
section ๐ง Phase 2
|
|
74
|
-
Task three :crit, t3, after t2, 7d
|
|
75
|
-
๐ Milestone :milestone, m1, after t3, 0d
|
|
76
|
-
```
|
|
77
|
-
|
|
78
|
-
---
|
|
79
|
-
|
|
80
|
-
## Complex Example
|
|
81
|
-
|
|
82
|
-
A cross-team platform migration spanning 4 months with 6 sections, 24 tasks, and 3 milestones. Shows dependencies across teams (backend migration blocks frontend migration), critical path items, and the full lifecycle from planning through launch monitoring.
|
|
83
|
-
|
|
84
|
-
```mermaid
|
|
85
|
-
gantt
|
|
86
|
-
accTitle: Multi-Team Platform Migration Roadmap
|
|
87
|
-
accDescr: Four-month migration project across planning, backend, frontend, data, QA, and launch teams with cross-team dependencies, critical path items, and three milestone gates
|
|
88
|
-
|
|
89
|
-
title ๐ Platform Migration โ Q1/Q2 2026
|
|
90
|
-
dateFormat YYYY-MM-DD
|
|
91
|
-
axisFormat %b %d
|
|
92
|
-
|
|
93
|
-
section ๐ Planning
|
|
94
|
-
Kickoff meeting :done, plan1, 2026-01-05, 2d
|
|
95
|
-
Architecture review :done, plan2, after plan1, 5d
|
|
96
|
-
Migration plan document :done, plan3, after plan2, 5d
|
|
97
|
-
Risk assessment :done, plan4, after plan2, 3d
|
|
98
|
-
๐ Planning complete :milestone, m_plan, after plan3, 0d
|
|
99
|
-
|
|
100
|
-
section ๐ง Backend Team
|
|
101
|
-
API redesign :crit, be1, after m_plan, 12d
|
|
102
|
-
Data migration scripts :be2, after m_plan, 10d
|
|
103
|
-
New service deployment :crit, be3, after be1, 8d
|
|
104
|
-
Backward compatibility layer :be4, after be1, 6d
|
|
105
|
-
|
|
106
|
-
section ๐จ Frontend Team
|
|
107
|
-
Component library update :fe1, after m_plan, 10d
|
|
108
|
-
Page migration :crit, fe2, after be3, 12d
|
|
109
|
-
A/B testing setup :fe3, after fe2, 5d
|
|
110
|
-
Feature parity validation :fe4, after fe2, 4d
|
|
111
|
-
|
|
112
|
-
section ๐๏ธ Data Team
|
|
113
|
-
Schema migration :crit, de1, after be2, 8d
|
|
114
|
-
ETL pipeline update :de2, after de1, 7d
|
|
115
|
-
Data validation suite :de3, after de2, 5d
|
|
116
|
-
Rollback scripts :de4, after de1, 4d
|
|
117
|
-
|
|
118
|
-
section ๐งช QA Team
|
|
119
|
-
Test plan creation :qa1, after m_plan, 7d
|
|
120
|
-
Regression suite :qa2, after be3, 10d
|
|
121
|
-
Performance testing :crit, qa3, after qa2, 7d
|
|
122
|
-
UAT coordination :qa4, after qa3, 5d
|
|
123
|
-
๐ QA sign-off :milestone, m_qa, after qa4, 0d
|
|
124
|
-
|
|
125
|
-
section ๐ Launch
|
|
126
|
-
Staging deploy :crit, l1, after m_qa, 3d
|
|
127
|
-
๐ Go / no-go decision :milestone, m_go, after l1, 0d
|
|
128
|
-
Production cutover :crit, l2, after m_go, 2d
|
|
129
|
-
Post-launch monitoring :l3, after l2, 10d
|
|
130
|
-
Legacy system decommission :l4, after l3, 5d
|
|
131
|
-
```
|
|
132
|
-
|
|
133
|
-
### Why this works
|
|
134
|
-
|
|
135
|
-
- **6 sections map to real teams** โ each team sees their workstream at a glance. Cross-team dependencies (frontend waits for backend API, QA waits for backend deploy) are explicit via `after taskId`.
|
|
136
|
-
- **`:crit` marks the critical path** โ the chain of tasks that determines the total project duration. If any critical task slips, the launch date moves. Mermaid highlights these in red.
|
|
137
|
-
- **3 milestones are decision gates** โ Planning Complete, QA Sign-off, and Go/No-Go. These are the points where stakeholders make decisions, not just status updates.
|
|
138
|
-
- **24 tasks across 4 months** is readable because sections group by team. Without sections, this would be an unreadable wall of bars.
|
|
@@ -1,74 +0,0 @@
|
|
|
1
|
-
<!-- Source: https://github.com/SuperiorByteWorks-LLC/agent-project | License: Apache-2.0 | Author: Clayton Young / Superior Byte Works, LLC (Boreal Bytes) -->
|
|
2
|
-
|
|
3
|
-
# Git Graph
|
|
4
|
-
|
|
5
|
-
> **Back to [Style Guide](../mermaid_style_guide.md)** โ Read the style guide first for emoji, color, and accessibility rules.
|
|
6
|
-
|
|
7
|
-
**Syntax keyword:** `gitGraph`
|
|
8
|
-
**Best for:** Branching strategies, merge workflows, release processes, git-flow visualization
|
|
9
|
-
**When NOT to use:** General processes (use [Flowchart](flowchart.md)), project timelines (use [Gantt](gantt.md))
|
|
10
|
-
|
|
11
|
-
---
|
|
12
|
-
|
|
13
|
-
## Exemplar Diagram
|
|
14
|
-
|
|
15
|
-
```mermaid
|
|
16
|
-
gitGraph
|
|
17
|
-
accTitle: Trunk-Based Development Workflow
|
|
18
|
-
accDescr: Git history showing short-lived feature branches merging into main with release tags demonstrating trunk-based development
|
|
19
|
-
|
|
20
|
-
commit id: "init"
|
|
21
|
-
commit id: "setup CI"
|
|
22
|
-
|
|
23
|
-
branch feature/auth
|
|
24
|
-
checkout feature/auth
|
|
25
|
-
commit id: "add login"
|
|
26
|
-
commit id: "add tests"
|
|
27
|
-
|
|
28
|
-
checkout main
|
|
29
|
-
merge feature/auth id: "merge auth" tag: "v1.0"
|
|
30
|
-
|
|
31
|
-
commit id: "update deps"
|
|
32
|
-
|
|
33
|
-
branch feature/dashboard
|
|
34
|
-
checkout feature/dashboard
|
|
35
|
-
commit id: "add charts"
|
|
36
|
-
commit id: "add filters"
|
|
37
|
-
|
|
38
|
-
checkout main
|
|
39
|
-
merge feature/dashboard id: "merge dash"
|
|
40
|
-
|
|
41
|
-
commit id: "perf fixes" tag: "v1.1"
|
|
42
|
-
```
|
|
43
|
-
|
|
44
|
-
---
|
|
45
|
-
|
|
46
|
-
## Tips
|
|
47
|
-
|
|
48
|
-
- Use descriptive `id:` labels on commits
|
|
49
|
-
- Add `tag:` for release versions
|
|
50
|
-
- Branch names should match your actual convention (`feature/`, `fix/`, `release/`)
|
|
51
|
-
- Show the **ideal** workflow โ this is prescriptive, not descriptive
|
|
52
|
-
- Use `type: HIGHLIGHT` on important merge commits
|
|
53
|
-
- Keep to **10โ15 commits** maximum for readability
|
|
54
|
-
|
|
55
|
-
---
|
|
56
|
-
|
|
57
|
-
## Template
|
|
58
|
-
|
|
59
|
-
```mermaid
|
|
60
|
-
gitGraph
|
|
61
|
-
accTitle: Your Title Here
|
|
62
|
-
accDescr: Describe the branching strategy and merge pattern
|
|
63
|
-
|
|
64
|
-
commit id: "initial"
|
|
65
|
-
commit id: "second commit"
|
|
66
|
-
|
|
67
|
-
branch feature/your-feature
|
|
68
|
-
checkout feature/your-feature
|
|
69
|
-
commit id: "feature work"
|
|
70
|
-
commit id: "add tests"
|
|
71
|
-
|
|
72
|
-
checkout main
|
|
73
|
-
merge feature/your-feature id: "merge feature" tag: "v1.0"
|
|
74
|
-
```
|