@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (414) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  2. package/dist/BigWigAdapter/BigWigAdapter.js +59 -29
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  4. package/dist/BigWigAdapter/configSchema.js +5 -0
  5. package/dist/BigWigAdapter/configSchema.js.map +1 -1
  6. package/dist/BigWigAdapter/index.d.ts +3 -1
  7. package/dist/BigWigAdapter/index.js +39 -3
  8. package/dist/BigWigAdapter/index.js.map +1 -1
  9. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  10. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +68 -0
  11. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  12. package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
  13. package/dist/CreateMultiWiggleExtension/index.js +111 -0
  14. package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
  15. package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
  16. package/dist/DensityRenderer/DensityRenderer.js +74 -0
  17. package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
  18. package/dist/DensityRenderer/configSchema.d.ts +2 -0
  19. package/dist/DensityRenderer/configSchema.js +10 -0
  20. package/dist/DensityRenderer/configSchema.js.map +1 -0
  21. package/dist/DensityRenderer/index.d.ts +3 -6
  22. package/dist/DensityRenderer/index.js +12 -149
  23. package/dist/DensityRenderer/index.js.map +1 -1
  24. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  25. package/dist/LinePlotRenderer/LinePlotRenderer.js +4 -103
  26. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  27. package/dist/LinePlotRenderer/configSchema.d.ts +2 -0
  28. package/dist/LinePlotRenderer/configSchema.js +16 -0
  29. package/dist/LinePlotRenderer/configSchema.js.map +1 -0
  30. package/dist/LinePlotRenderer/index.d.ts +3 -3
  31. package/dist/LinePlotRenderer/index.js +13 -14
  32. package/dist/LinePlotRenderer/index.js.map +1 -1
  33. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  34. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +8 -16
  35. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  36. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  37. package/dist/LinearWiggleDisplay/components/Tooltip.js +11 -122
  38. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  39. package/dist/LinearWiggleDisplay/index.d.ts +7 -3
  40. package/dist/LinearWiggleDisplay/index.js +23 -8
  41. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  42. package/dist/LinearWiggleDisplay/models/model.d.ts +24 -5
  43. package/dist/LinearWiggleDisplay/models/model.js +79 -126
  44. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  45. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  46. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +135 -0
  47. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  48. package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
  49. package/dist/MultiDensityRenderer/configSchema.js +10 -0
  50. package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
  51. package/dist/MultiDensityRenderer/index.d.ts +3 -0
  52. package/dist/MultiDensityRenderer/index.js +19 -0
  53. package/dist/MultiDensityRenderer/index.js.map +1 -0
  54. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  55. package/dist/MultiLineRenderer/MultiLineRenderer.js +124 -0
  56. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  57. package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
  58. package/dist/MultiLineRenderer/configSchema.js +23 -0
  59. package/dist/MultiLineRenderer/configSchema.js.map +1 -0
  60. package/dist/MultiLineRenderer/index.d.ts +3 -0
  61. package/dist/MultiLineRenderer/index.js +19 -0
  62. package/dist/MultiLineRenderer/index.js.map +1 -0
  63. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  64. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +239 -0
  65. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  66. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  67. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +91 -0
  68. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  69. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  70. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +78 -0
  71. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  72. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  73. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +144 -0
  74. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  75. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  76. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +26 -0
  77. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  78. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  79. package/dist/MultiLinearWiggleDisplay/components/util.js +38 -0
  80. package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  81. package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
  82. package/dist/MultiLinearWiggleDisplay/index.js +23 -0
  83. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
  84. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  85. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
  86. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  87. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  88. package/dist/MultiLinearWiggleDisplay/models/model.js +675 -0
  89. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  90. package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
  91. package/dist/MultiQuantitativeTrack/index.js +19 -0
  92. package/dist/MultiQuantitativeTrack/index.js.map +1 -0
  93. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  94. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +131 -0
  95. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  96. package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
  97. package/dist/MultiRowLineRenderer/configSchema.js +23 -0
  98. package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
  99. package/dist/MultiRowLineRenderer/index.d.ts +3 -0
  100. package/dist/MultiRowLineRenderer/index.js +19 -0
  101. package/dist/MultiRowLineRenderer/index.js.map +1 -0
  102. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  103. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +164 -0
  104. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  105. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  106. package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
  107. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  108. package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
  109. package/dist/MultiRowXYPlotRenderer/index.js +19 -0
  110. package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
  111. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  112. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +244 -0
  113. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  114. package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
  115. package/dist/MultiWiggleAdapter/configSchema.js +14 -0
  116. package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
  117. package/dist/MultiWiggleAdapter/index.d.ts +3 -0
  118. package/dist/MultiWiggleAdapter/index.js +47 -0
  119. package/dist/MultiWiggleAdapter/index.js.map +1 -0
  120. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  121. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +139 -0
  122. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  123. package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  124. package/dist/MultiWiggleAddTrackWidget/index.js +19 -0
  125. package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
  126. package/dist/MultiWiggleRendering.d.ts +21 -0
  127. package/dist/MultiWiggleRendering.js +164 -0
  128. package/dist/MultiWiggleRendering.js.map +1 -0
  129. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  130. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +153 -0
  131. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  132. package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  133. package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
  134. package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
  135. package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
  136. package/dist/MultiXYPlotRenderer/index.js +19 -0
  137. package/dist/MultiXYPlotRenderer/index.js.map +1 -0
  138. package/dist/QuantitativeTrack/index.d.ts +3 -0
  139. package/dist/QuantitativeTrack/index.js +19 -0
  140. package/dist/QuantitativeTrack/index.js.map +1 -0
  141. package/dist/Tooltip.d.ts +20 -0
  142. package/dist/Tooltip.js +124 -0
  143. package/dist/Tooltip.js.map +1 -0
  144. package/dist/WiggleBaseRenderer.d.ts +9 -10
  145. package/dist/WiggleBaseRenderer.js +23 -10
  146. package/dist/WiggleBaseRenderer.js.map +1 -1
  147. package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
  148. package/dist/WiggleRPC/rpcMethods.js +91 -16
  149. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  150. package/dist/WiggleRendering.d.ts +1 -1
  151. package/dist/WiggleRendering.js +4 -8
  152. package/dist/WiggleRendering.js.map +1 -1
  153. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  154. package/dist/XYPlotRenderer/XYPlotRenderer.js +23 -126
  155. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  156. package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
  157. package/dist/XYPlotRenderer/configSchema.js +31 -0
  158. package/dist/XYPlotRenderer/configSchema.js.map +1 -0
  159. package/dist/XYPlotRenderer/index.d.ts +7 -3
  160. package/dist/XYPlotRenderer/index.js +17 -25
  161. package/dist/XYPlotRenderer/index.js.map +1 -1
  162. package/dist/configSchema.js +0 -5
  163. package/dist/configSchema.js.map +1 -1
  164. package/dist/drawxy.d.ts +50 -0
  165. package/dist/drawxy.js +411 -0
  166. package/dist/drawxy.js.map +1 -0
  167. package/dist/index.d.ts +79 -21
  168. package/dist/index.js +56 -89
  169. package/dist/index.js.map +1 -1
  170. package/dist/util.d.ts +34 -1
  171. package/dist/util.js +159 -1
  172. package/dist/util.js.map +1 -1
  173. package/esm/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  174. package/esm/BigWigAdapter/BigWigAdapter.js +37 -18
  175. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  176. package/esm/BigWigAdapter/configSchema.js +5 -0
  177. package/esm/BigWigAdapter/configSchema.js.map +1 -1
  178. package/esm/BigWigAdapter/index.d.ts +3 -1
  179. package/esm/BigWigAdapter/index.js +14 -1
  180. package/esm/BigWigAdapter/index.js.map +1 -1
  181. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  182. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
  183. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  184. package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
  185. package/esm/CreateMultiWiggleExtension/index.js +51 -0
  186. package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
  187. package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
  188. package/esm/DensityRenderer/DensityRenderer.js +8 -0
  189. package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
  190. package/esm/DensityRenderer/configSchema.d.ts +2 -0
  191. package/esm/DensityRenderer/configSchema.js +5 -0
  192. package/esm/DensityRenderer/configSchema.js.map +1 -0
  193. package/esm/DensityRenderer/index.d.ts +3 -6
  194. package/esm/DensityRenderer/index.js +11 -38
  195. package/esm/DensityRenderer/index.js.map +1 -1
  196. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  197. package/esm/LinePlotRenderer/LinePlotRenderer.js +7 -65
  198. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  199. package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
  200. package/esm/LinePlotRenderer/configSchema.js +11 -0
  201. package/esm/LinePlotRenderer/configSchema.js.map +1 -0
  202. package/esm/LinePlotRenderer/index.d.ts +3 -3
  203. package/esm/LinePlotRenderer/index.js +11 -11
  204. package/esm/LinePlotRenderer/index.js.map +1 -1
  205. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  206. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +9 -16
  207. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  208. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  209. package/esm/LinearWiggleDisplay/components/Tooltip.js +3 -76
  210. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  211. package/esm/LinearWiggleDisplay/index.d.ts +7 -3
  212. package/esm/LinearWiggleDisplay/index.js +20 -3
  213. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  214. package/esm/LinearWiggleDisplay/models/model.d.ts +24 -5
  215. package/esm/LinearWiggleDisplay/models/model.js +87 -133
  216. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  217. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  218. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
  219. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  220. package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
  221. package/esm/MultiDensityRenderer/configSchema.js +5 -0
  222. package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
  223. package/esm/MultiDensityRenderer/index.d.ts +3 -0
  224. package/esm/MultiDensityRenderer/index.js +12 -0
  225. package/esm/MultiDensityRenderer/index.js.map +1 -0
  226. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  227. package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
  228. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  229. package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
  230. package/esm/MultiLineRenderer/configSchema.js +18 -0
  231. package/esm/MultiLineRenderer/configSchema.js.map +1 -0
  232. package/esm/MultiLineRenderer/index.d.ts +3 -0
  233. package/esm/MultiLineRenderer/index.js +12 -0
  234. package/esm/MultiLineRenderer/index.js.map +1 -0
  235. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  236. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
  237. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  238. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  239. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  240. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  241. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  242. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
  243. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  244. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  245. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
  246. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  247. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  248. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
  249. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  250. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  251. package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
  252. package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  253. package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
  254. package/esm/MultiLinearWiggleDisplay/index.js +18 -0
  255. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
  256. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  257. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
  258. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  259. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  260. package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
  261. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  262. package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
  263. package/esm/MultiQuantitativeTrack/index.js +14 -0
  264. package/esm/MultiQuantitativeTrack/index.js.map +1 -0
  265. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  266. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
  267. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  268. package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
  269. package/esm/MultiRowLineRenderer/configSchema.js +18 -0
  270. package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
  271. package/esm/MultiRowLineRenderer/index.d.ts +3 -0
  272. package/esm/MultiRowLineRenderer/index.js +12 -0
  273. package/esm/MultiRowLineRenderer/index.js.map +1 -0
  274. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  275. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
  276. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  277. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  278. package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
  279. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  280. package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
  281. package/esm/MultiRowXYPlotRenderer/index.js +12 -0
  282. package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
  283. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  284. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +87 -0
  285. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  286. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
  287. package/esm/MultiWiggleAdapter/configSchema.js +12 -0
  288. package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
  289. package/esm/MultiWiggleAdapter/index.d.ts +3 -0
  290. package/esm/MultiWiggleAdapter/index.js +15 -0
  291. package/esm/MultiWiggleAdapter/index.js.map +1 -0
  292. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  293. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
  294. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  295. package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  296. package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
  297. package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
  298. package/esm/MultiWiggleRendering.d.ts +21 -0
  299. package/esm/MultiWiggleRendering.js +75 -0
  300. package/esm/MultiWiggleRendering.js.map +1 -0
  301. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  302. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
  303. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  304. package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  305. package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
  306. package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
  307. package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
  308. package/esm/MultiXYPlotRenderer/index.js +12 -0
  309. package/esm/MultiXYPlotRenderer/index.js.map +1 -0
  310. package/esm/QuantitativeTrack/index.d.ts +3 -0
  311. package/esm/QuantitativeTrack/index.js +14 -0
  312. package/esm/QuantitativeTrack/index.js.map +1 -0
  313. package/esm/Tooltip.d.ts +20 -0
  314. package/esm/Tooltip.js +71 -0
  315. package/esm/Tooltip.js.map +1 -0
  316. package/esm/WiggleBaseRenderer.d.ts +9 -10
  317. package/esm/WiggleBaseRenderer.js +7 -5
  318. package/esm/WiggleBaseRenderer.js.map +1 -1
  319. package/esm/WiggleRPC/rpcMethods.d.ts +17 -1
  320. package/esm/WiggleRPC/rpcMethods.js +49 -7
  321. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  322. package/esm/WiggleRendering.d.ts +1 -1
  323. package/esm/WiggleRendering.js +4 -8
  324. package/esm/WiggleRendering.js.map +1 -1
  325. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  326. package/esm/XYPlotRenderer/XYPlotRenderer.js +16 -99
  327. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  328. package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
  329. package/esm/XYPlotRenderer/configSchema.js +26 -0
  330. package/esm/XYPlotRenderer/configSchema.js.map +1 -0
  331. package/esm/XYPlotRenderer/index.d.ts +7 -3
  332. package/esm/XYPlotRenderer/index.js +12 -22
  333. package/esm/XYPlotRenderer/index.js.map +1 -1
  334. package/esm/configSchema.js +0 -5
  335. package/esm/configSchema.js.map +1 -1
  336. package/esm/drawxy.d.ts +50 -0
  337. package/esm/drawxy.js +286 -0
  338. package/esm/drawxy.js.map +1 -0
  339. package/esm/index.d.ts +79 -21
  340. package/esm/index.js +49 -74
  341. package/esm/index.js.map +1 -1
  342. package/esm/util.d.ts +34 -1
  343. package/esm/util.js +108 -0
  344. package/esm/util.js.map +1 -1
  345. package/package.json +11 -5
  346. package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
  347. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
  348. package/src/BigWigAdapter/configSchema.ts +5 -0
  349. package/src/BigWigAdapter/index.ts +19 -1
  350. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
  351. package/src/CreateMultiWiggleExtension/index.ts +57 -0
  352. package/src/DensityRenderer/DensityRenderer.test.js +8 -2
  353. package/src/DensityRenderer/DensityRenderer.ts +14 -0
  354. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
  355. package/src/DensityRenderer/configSchema.ts +11 -0
  356. package/src/DensityRenderer/index.ts +14 -53
  357. package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
  358. package/src/LinePlotRenderer/{index.js → configSchema.ts} +3 -4
  359. package/src/LinePlotRenderer/index.ts +16 -0
  360. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +17 -19
  361. package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -122
  362. package/src/LinearWiggleDisplay/index.ts +24 -3
  363. package/src/LinearWiggleDisplay/models/model.tsx +98 -174
  364. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
  365. package/src/MultiDensityRenderer/configSchema.ts +10 -0
  366. package/src/MultiDensityRenderer/index.ts +16 -0
  367. package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
  368. package/src/MultiLineRenderer/configSchema.ts +24 -0
  369. package/src/MultiLineRenderer/index.ts +17 -0
  370. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
  371. package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
  372. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
  373. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
  374. package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
  375. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
  376. package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
  377. package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
  378. package/src/MultiLinearWiggleDisplay/index.ts +20 -0
  379. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
  380. package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
  381. package/src/MultiQuantitativeTrack/index.ts +26 -0
  382. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
  383. package/src/MultiRowLineRenderer/configSchema.ts +25 -0
  384. package/src/MultiRowLineRenderer/index.ts +16 -0
  385. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
  386. package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
  387. package/src/MultiRowXYPlotRenderer/index.ts +16 -0
  388. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +120 -0
  389. package/src/MultiWiggleAdapter/configSchema.ts +16 -0
  390. package/src/MultiWiggleAdapter/index.ts +20 -0
  391. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  392. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
  393. package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
  394. package/src/MultiWiggleRendering.tsx +125 -0
  395. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
  396. package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
  397. package/src/MultiXYPlotRenderer/index.ts +17 -0
  398. package/src/QuantitativeTrack/index.ts +26 -0
  399. package/src/Tooltip.tsx +123 -0
  400. package/src/WiggleBaseRenderer.tsx +15 -9
  401. package/src/WiggleRPC/rpcMethods.ts +68 -17
  402. package/src/WiggleRendering.tsx +12 -18
  403. package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
  404. package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -171
  405. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
  406. package/src/XYPlotRenderer/configSchema.ts +32 -0
  407. package/src/XYPlotRenderer/index.ts +16 -27
  408. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
  409. package/src/configSchema.ts +0 -5
  410. package/src/declare.d.ts +0 -1
  411. package/src/drawxy.ts +387 -0
  412. package/src/index.ts +75 -129
  413. package/src/util.ts +174 -0
  414. package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
@@ -0,0 +1,78 @@
1
+ "use strict";
2
+ var __assign = (this && this.__assign) || function () {
3
+ __assign = Object.assign || function(t) {
4
+ for (var s, i = 1, n = arguments.length; i < n; i++) {
5
+ s = arguments[i];
6
+ for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
7
+ t[p] = s[p];
8
+ }
9
+ return t;
10
+ };
11
+ return __assign.apply(this, arguments);
12
+ };
13
+ var __read = (this && this.__read) || function (o, n) {
14
+ var m = typeof Symbol === "function" && o[Symbol.iterator];
15
+ if (!m) return o;
16
+ var i = m.call(o), r, ar = [], e;
17
+ try {
18
+ while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
19
+ }
20
+ catch (error) { e = { error: error }; }
21
+ finally {
22
+ try {
23
+ if (r && !r.done && (m = i["return"])) m.call(i);
24
+ }
25
+ finally { if (e) throw e.error; }
26
+ }
27
+ return ar;
28
+ };
29
+ var __importDefault = (this && this.__importDefault) || function (mod) {
30
+ return (mod && mod.__esModule) ? mod : { "default": mod };
31
+ };
32
+ Object.defineProperty(exports, "__esModule", { value: true });
33
+ exports.Tooltip = void 0;
34
+ var react_1 = __importDefault(require("react"));
35
+ var mobx_react_1 = require("mobx-react");
36
+ // locals
37
+ var util_1 = require("../../util");
38
+ var Tooltip_1 = __importDefault(require("../../Tooltip"));
39
+ exports.Tooltip = Tooltip_1.default;
40
+ var en = function (n) { return n.toLocaleString('en-US'); };
41
+ var TooltipContents = react_1.default.forwardRef(function (_a, ref) {
42
+ var model = _a.model, feature = _a.feature;
43
+ var start = feature.get('start');
44
+ var end = feature.get('end');
45
+ var refName = feature.get('refName');
46
+ var coord = start === end ? en(start) : "".concat(en(start), "..").concat(en(end));
47
+ var sources = feature.get('sources');
48
+ var source = feature.get('source');
49
+ var summary = feature.get('summary');
50
+ var obj = Object.fromEntries(model.sources.map(function (ent) { return [ent.name, ent]; }));
51
+ return (react_1.default.createElement("div", { ref: ref },
52
+ [refName, coord].filter(function (f) { return !!f; }).join(':'),
53
+ react_1.default.createElement("br", null),
54
+ sources ? (react_1.default.createElement("table", null,
55
+ react_1.default.createElement("thead", null,
56
+ react_1.default.createElement("tr", null,
57
+ react_1.default.createElement("th", null, "color"),
58
+ react_1.default.createElement("th", null, "source"),
59
+ react_1.default.createElement("th", null, "score"))),
60
+ react_1.default.createElement("tbody", null, Object.entries(sources).map(function (_a) {
61
+ var _b;
62
+ var _c = __read(_a, 2), source = _c[0], data = _c[1];
63
+ return (react_1.default.createElement("tr", { key: source },
64
+ react_1.default.createElement("td", { style: { background: (_b = obj[source]) === null || _b === void 0 ? void 0 : _b.color } }, " "),
65
+ react_1.default.createElement("td", null, source),
66
+ react_1.default.createElement("td", null, (0, util_1.toP)(data.score))));
67
+ })))) : (react_1.default.createElement("span", null,
68
+ source,
69
+ ' ',
70
+ summary
71
+ ? "min:".concat((0, util_1.toP)(feature.get('minScore')), " avg:").concat((0, util_1.toP)(feature.get('score')), " max:").concat((0, util_1.toP)(feature.get('maxScore')))
72
+ : (0, util_1.toP)(feature.get('score'))))));
73
+ });
74
+ var WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
75
+ return react_1.default.createElement(Tooltip_1.default, __assign({ useClientY: true, TooltipContents: TooltipContents }, props));
76
+ });
77
+ exports.default = WiggleTooltip;
78
+ //# sourceMappingURL=Tooltip.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Tooltip.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/Tooltip.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AAGrC,SAAS;AACT,mCAAwC;AACxC,0DAAiE;AAqExD,kBArEF,iBAAO,CAqEE;AAnEhB,IAAM,EAAE,GAAG,UAAC,CAAS,IAAK,OAAA,CAAC,CAAC,cAAc,CAAC,OAAO,CAAC,EAAzB,CAAyB,CAAA;AAEnD,IAAM,eAAe,GAAG,eAAK,CAAC,UAAU,CAGtC,UAAC,EAAkB,EAAE,GAAG;QAArB,KAAK,WAAA,EAAE,OAAO,aAAA;IACjB,IAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IAClC,IAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC9B,IAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;IACtC,IAAM,KAAK,GAAG,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,UAAG,EAAE,CAAC,KAAK,CAAC,eAAK,EAAE,CAAC,GAAG,CAAC,CAAE,CAAA;IACpE,IAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAsC,CAAA;IAC3E,IAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;IACpC,IAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;IACtC,IAAM,GAAG,GAAG,MAAM,CAAC,WAAW,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,UAAA,GAAG,IAAI,OAAA,CAAC,GAAG,CAAC,IAAI,EAAE,GAAG,CAAC,EAAf,CAAe,CAAC,CAAC,CAAA;IAEzE,OAAO,CACL,uCAAK,GAAG,EAAE,GAAG;QACV,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC,MAAM,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,EAAH,CAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC;QAC5C,yCAAM;QACL,OAAO,CAAC,CAAC,CAAC,CACT;YACE;gBACE;oBACE,kDAAc;oBACd,mDAAe;oBACf,kDAAc,CACX,CACC;YACR,6CACG,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,UAAC,EAAc;;oBAAd,KAAA,aAAc,EAAb,MAAM,QAAA,EAAE,IAAI,QAAA;gBAAM,OAAA,CAC/C,sCAAI,GAAG,EAAE,MAAM;oBACb,sCAAI,KAAK,EAAE,EAAE,UAAU,EAAE,MAAA,GAAG,CAAC,MAAM,CAAC,0CAAE,KAAK,EAAE,QAAQ;oBACrD,0CAAK,MAAM,CAAM;oBACjB,0CAAK,IAAA,UAAG,EAAC,IAAI,CAAC,KAAK,CAAC,CAAM,CACvB,CACN,CAAA;aAAA,CAAC,CACI,CACF,CACT,CAAC,CAAC,CAAC,CACF;YACG,MAAM;YAAE,GAAG;YACX,OAAO;gBACN,CAAC,CAAC,cAAO,IAAA,UAAG,EAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,kBAAQ,IAAA,UAAG,EAC5C,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CACrB,kBAAQ,IAAA,UAAG,EAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAAE;gBACzC,CAAC,CAAC,IAAA,UAAG,EAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CACxB,CACR,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAIF,IAAM,aAAa,GAAG,IAAA,qBAAQ,EAC5B,UAAC,KAOA;IACC,OAAO,8BAAC,iBAAO,aAAC,UAAU,QAAC,eAAe,EAAE,eAAe,IAAM,KAAK,EAAI,CAAA;AAC5E,CAAC,CACF,CAAA;AACD,kBAAe,aAAa,CAAA"}
@@ -0,0 +1,13 @@
1
+ /// <reference types="react" />
2
+ import { WiggleDisplayModel } from '../models/model';
3
+ import YScaleBar from './YScaleBar';
4
+ export declare const StatBars: (props: {
5
+ model: WiggleDisplayModel;
6
+ orientation?: string | undefined;
7
+ exportSVG?: boolean | undefined;
8
+ }) => JSX.Element | null;
9
+ declare const LinearWiggleDisplay: (props: {
10
+ model: WiggleDisplayModel;
11
+ }) => JSX.Element;
12
+ export default LinearWiggleDisplay;
13
+ export { YScaleBar };
@@ -0,0 +1,144 @@
1
+ "use strict";
2
+ var __assign = (this && this.__assign) || function () {
3
+ __assign = Object.assign || function(t) {
4
+ for (var s, i = 1, n = arguments.length; i < n; i++) {
5
+ s = arguments[i];
6
+ for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
7
+ t[p] = s[p];
8
+ }
9
+ return t;
10
+ };
11
+ return __assign.apply(this, arguments);
12
+ };
13
+ var __read = (this && this.__read) || function (o, n) {
14
+ var m = typeof Symbol === "function" && o[Symbol.iterator];
15
+ if (!m) return o;
16
+ var i = m.call(o), r, ar = [], e;
17
+ try {
18
+ while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
19
+ }
20
+ catch (error) { e = { error: error }; }
21
+ finally {
22
+ try {
23
+ if (r && !r.done && (m = i["return"])) m.call(i);
24
+ }
25
+ finally { if (e) throw e.error; }
26
+ }
27
+ return ar;
28
+ };
29
+ var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
30
+ if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
31
+ if (ar || !(i in from)) {
32
+ if (!ar) ar = Array.prototype.slice.call(from, 0, i);
33
+ ar[i] = from[i];
34
+ }
35
+ }
36
+ return to.concat(ar || Array.prototype.slice.call(from));
37
+ };
38
+ var __importDefault = (this && this.__importDefault) || function (mod) {
39
+ return (mod && mod.__esModule) ? mod : { "default": mod };
40
+ };
41
+ Object.defineProperty(exports, "__esModule", { value: true });
42
+ exports.YScaleBar = exports.StatBars = void 0;
43
+ var react_1 = __importDefault(require("react"));
44
+ var util_1 = require("@jbrowse/core/util");
45
+ var configuration_1 = require("@jbrowse/core/configuration");
46
+ var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
47
+ var mobx_react_1 = require("mobx-react");
48
+ var YScaleBar_1 = __importDefault(require("./YScaleBar"));
49
+ exports.YScaleBar = YScaleBar_1.default;
50
+ var trackLabelFontSize = 12.8;
51
+ function getOffset(model) {
52
+ var prefersOffset = model.prefersOffset;
53
+ var trackLabels = (0, util_1.getContainingView)(model).trackLabels;
54
+ var track = (0, util_1.getContainingTrack)(model);
55
+ var trackName = (0, configuration_1.getConf)(track, 'name');
56
+ return trackLabels === 'overlapping' && !prefersOffset
57
+ ? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
58
+ : 10;
59
+ }
60
+ var Wrapper = (0, mobx_react_1.observer)(function (_a) {
61
+ var children = _a.children, model = _a.model, exportSVG = _a.exportSVG;
62
+ if (exportSVG) {
63
+ return react_1.default.createElement(react_1.default.Fragment, null, children);
64
+ }
65
+ else {
66
+ var height = model.height;
67
+ return (react_1.default.createElement("svg", { style: {
68
+ position: 'absolute',
69
+ top: 0,
70
+ left: 0,
71
+ pointerEvents: 'none',
72
+ height: height,
73
+ width: 1800,
74
+ } }, children));
75
+ }
76
+ });
77
+ var RectBg = function (props) {
78
+ var _a = props.color, color = _a === void 0 ? 'rgb(255,255,255,0.8)' : _a;
79
+ return react_1.default.createElement("rect", __assign({}, props, { fill: color }));
80
+ };
81
+ var ScoreLegend = (0, mobx_react_1.observer)(function (_a) {
82
+ var model = _a.model;
83
+ var ticks = model.ticks, scaleType = model.scaleType;
84
+ var width = (0, util_1.getContainingView)(model).width;
85
+ var legend = "[".concat(ticks.values[0], "-").concat(ticks.values[1], "]") +
86
+ (scaleType === 'log' ? ' (log scale)' : '');
87
+ var len = (0, util_1.measureText)(legend, 14);
88
+ var padding = 25;
89
+ var xpos = width - len - padding;
90
+ return (react_1.default.createElement(react_1.default.Fragment, null,
91
+ react_1.default.createElement(RectBg, { y: 0, x: xpos, width: len + 6, height: 16 }),
92
+ react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
93
+ });
94
+ var ColorLegend = (0, mobx_react_1.observer)(function (_a) {
95
+ var model = _a.model, rowHeight = _a.rowHeight, labelWidth = _a.labelWidth, exportSVG = _a.exportSVG;
96
+ var needsCustomLegend = model.needsCustomLegend, needsScalebar = model.needsScalebar, needsFullHeightScalebar = model.needsFullHeightScalebar, rowHeightTooSmallForScalebar = model.rowHeightTooSmallForScalebar, renderColorBoxes = model.renderColorBoxes, sources = model.sources;
97
+ var svgFontSize = Math.min(rowHeight, 12);
98
+ var canDisplayLabel = rowHeight > 11;
99
+ var colorBoxWidth = renderColorBoxes ? 15 : 0;
100
+ var legendWidth = labelWidth + colorBoxWidth + 5;
101
+ var svgOffset = exportSVG ? 10 : 0;
102
+ var extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
103
+ return sources ? (react_1.default.createElement(react_1.default.Fragment, null,
104
+ /* 0.25 for hanging letters like g */
105
+ needsFullHeightScalebar ? (react_1.default.createElement(RectBg, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
106
+ sources.map(function (source, idx) {
107
+ var boxHeight = Math.min(20, rowHeight);
108
+ return (react_1.default.createElement(react_1.default.Fragment, { key: source.name + '-' + idx },
109
+ !needsFullHeightScalebar ? (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })) : null,
110
+ source.color ? (react_1.default.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
111
+ canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
112
+ }))) : null;
113
+ });
114
+ exports.StatBars = (0, mobx_react_1.observer)(function (props) {
115
+ var model = props.model, orientation = props.orientation, exportSVG = props.exportSVG;
116
+ var stats = model.stats, needsCustomLegend = model.needsCustomLegend, needsFullHeightScalebar = model.needsFullHeightScalebar, rowHeightTooSmallForScalebar = model.rowHeightTooSmallForScalebar, rowHeight = model.rowHeight, sources = model.sources, ticks = model.ticks;
117
+ var svgFontSize = Math.min(rowHeight, 12);
118
+ var canDisplayLabel = rowHeight > 11;
119
+ var viewWidth = (0, util_1.getContainingView)(model).width;
120
+ var minWidth = 20;
121
+ var ready = stats && sources;
122
+ if (!ready) {
123
+ return null;
124
+ }
125
+ var labelWidth = Math.max.apply(Math, __spreadArray([], __read((sources
126
+ .map(function (s) { return (0, util_1.measureText)(s.name, svgFontSize); })
127
+ .map(function (width) { return (canDisplayLabel ? width : minWidth); }) || [0])), false));
128
+ return (react_1.default.createElement(Wrapper, __assign({}, props), needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
129
+ react_1.default.createElement("g", { transform: "translate(".concat(!exportSVG ? getOffset(model) : 0, ",0)") },
130
+ react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
131
+ react_1.default.createElement("g", { transform: "translate(".concat(viewWidth - labelWidth - 100, ",0)") },
132
+ react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
133
+ react_1.default.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
134
+ rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend, __assign({}, props))) : (sources.map(function (_source, idx) { return (react_1.default.createElement("g", { transform: "translate(0 ".concat(rowHeight * idx, ")"), key: JSON.stringify(ticks) + '-' + idx },
135
+ react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation }))); }))))));
136
+ });
137
+ var LinearWiggleDisplay = (0, mobx_react_1.observer)(function (props) {
138
+ var model = props.model;
139
+ return (react_1.default.createElement("div", null,
140
+ react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, __assign({}, props)),
141
+ react_1.default.createElement(exports.StatBars, { model: model })));
142
+ });
143
+ exports.default = LinearWiggleDisplay;
144
+ //# sourceMappingURL=WiggleDisplayComponent.js.map
@@ -0,0 +1 @@
1
+ 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@@ -0,0 +1,7 @@
1
+ /// <reference types="react" />
2
+ import { WiggleDisplayModel } from '../models/model';
3
+ declare const YScaleBar: ({ model, orientation, }: {
4
+ model: WiggleDisplayModel;
5
+ orientation?: string | undefined;
6
+ }) => JSX.Element | null;
7
+ export default YScaleBar;
@@ -0,0 +1,26 @@
1
+ "use strict";
2
+ var __assign = (this && this.__assign) || function () {
3
+ __assign = Object.assign || function(t) {
4
+ for (var s, i = 1, n = arguments.length; i < n; i++) {
5
+ s = arguments[i];
6
+ for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
7
+ t[p] = s[p];
8
+ }
9
+ return t;
10
+ };
11
+ return __assign.apply(this, arguments);
12
+ };
13
+ var __importDefault = (this && this.__importDefault) || function (mod) {
14
+ return (mod && mod.__esModule) ? mod : { "default": mod };
15
+ };
16
+ Object.defineProperty(exports, "__esModule", { value: true });
17
+ var react_1 = __importDefault(require("react"));
18
+ var mobx_react_1 = require("mobx-react");
19
+ var react_d3_axis_mod_1 = require("react-d3-axis-mod");
20
+ var YScaleBar = (0, mobx_react_1.observer)(function (_a) {
21
+ var model = _a.model, orientation = _a.orientation;
22
+ var ticks = model.ticks;
23
+ return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, __assign({}, ticks, { shadow: 2, format: function (n) { return n; }, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT } }))) : null;
24
+ });
25
+ exports.default = YScaleBar;
26
+ //# sourceMappingURL=YScaleBar.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/YScaleBar.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,uDAAqD;AAGrD,IAAM,SAAS,GAAG,IAAA,qBAAQ,EACxB,UAAC,EAMA;QALC,KAAK,WAAA,EACL,WAAW,iBAAA;IAKH,IAAA,KAAK,GAAK,KAAK,MAAV,CAAU;IACvB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,eACC,KAAK,IACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,UAAC,CAAS,IAAK,OAAA,CAAC,EAAD,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,IACxD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AACD,kBAAe,SAAS,CAAA"}
@@ -0,0 +1,10 @@
1
+ export declare function moveUp(arr: {
2
+ name: string;
3
+ }[], sel: string[], by?: number): {
4
+ name: string;
5
+ }[];
6
+ export declare function moveDown(arr: {
7
+ name: string;
8
+ }[], sel: string[], by?: number): {
9
+ name: string;
10
+ }[];
@@ -0,0 +1,38 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.moveDown = exports.moveUp = void 0;
4
+ function moveUp(arr, sel, by) {
5
+ if (by === void 0) { by = 1; }
6
+ var idxs = sel
7
+ .map(function (l) { return arr.findIndex(function (v) { return v.name === l; }); })
8
+ .sort(function (a, b) { return a - b; });
9
+ var lastIdx = 0;
10
+ for (var i = 0; i < idxs.length; i++) {
11
+ var old = idxs[i];
12
+ var idx = Math.max(lastIdx, old - by);
13
+ if (idx >= lastIdx) {
14
+ arr.splice(idx, 0, arr.splice(old, 1)[0]);
15
+ }
16
+ lastIdx = lastIdx + 1;
17
+ }
18
+ return arr;
19
+ }
20
+ exports.moveUp = moveUp;
21
+ function moveDown(arr, sel, by) {
22
+ if (by === void 0) { by = 1; }
23
+ var idxs = sel
24
+ .map(function (l) { return arr.findIndex(function (v) { return v.name === l; }); })
25
+ .sort(function (a, b) { return b - a; });
26
+ var lastIdx = arr.length - 1;
27
+ for (var i = 0; i < idxs.length; i++) {
28
+ var old = idxs[i];
29
+ var idx = Math.min(lastIdx, old + by);
30
+ if (idx <= lastIdx) {
31
+ arr.splice(idx, 0, arr.splice(old, 1)[0]);
32
+ }
33
+ lastIdx = lastIdx - 1;
34
+ }
35
+ return arr;
36
+ }
37
+ exports.moveDown = moveDown;
38
+ //# sourceMappingURL=util.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/util.ts"],"names":[],"mappings":";;;AAAA,SAAgB,MAAM,CAAC,GAAuB,EAAE,GAAa,EAAE,EAAM;IAAN,mBAAA,EAAA,MAAM;IACnE,IAAM,IAAI,GAAG,GAAG;SACb,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,CAAC,EAAZ,CAAY,CAAC,EAAhC,CAAgC,CAAC;SAC1C,IAAI,CAAC,UAAC,CAAC,EAAE,CAAC,IAAK,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC,CAAA;IACxB,IAAI,OAAO,GAAG,CAAC,CAAA;IACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACpC,IAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QACnB,IAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,GAAG,EAAE,CAAC,CAAA;QACvC,IAAI,GAAG,IAAI,OAAO,EAAE;YAClB,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;SAC1C;QACD,OAAO,GAAG,OAAO,GAAG,CAAC,CAAA;KACtB;IAED,OAAO,GAAG,CAAA;AACZ,CAAC;AAfD,wBAeC;AAED,SAAgB,QAAQ,CAAC,GAAuB,EAAE,GAAa,EAAE,EAAM;IAAN,mBAAA,EAAA,MAAM;IACrE,IAAM,IAAI,GAAG,GAAG;SACb,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,CAAC,EAAZ,CAAY,CAAC,EAAhC,CAAgC,CAAC;SAC1C,IAAI,CAAC,UAAC,CAAC,EAAE,CAAC,IAAK,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC,CAAA;IACxB,IAAI,OAAO,GAAG,GAAG,CAAC,MAAM,GAAG,CAAC,CAAA;IAC5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACpC,IAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QACnB,IAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,GAAG,EAAE,CAAC,CAAA;QACvC,IAAI,GAAG,IAAI,OAAO,EAAE;YAClB,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;SAC1C;QACD,OAAO,GAAG,OAAO,GAAG,CAAC,CAAA;KACtB;IAED,OAAO,GAAG,CAAA;AACZ,CAAC;AAfD,4BAeC"}
@@ -0,0 +1,3 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -0,0 +1,23 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ var DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
7
+ var configSchema_1 = __importDefault(require("./models/configSchema"));
8
+ var model_1 = __importDefault(require("./models/model"));
9
+ var WiggleDisplayComponent_1 = __importDefault(require("./components/WiggleDisplayComponent"));
10
+ exports.default = (function (pluginManager) {
11
+ pluginManager.addDisplayType(function () {
12
+ var configSchema = (0, configSchema_1.default)(pluginManager);
13
+ return new DisplayType_1.default({
14
+ name: 'MultiLinearWiggleDisplay',
15
+ configSchema: configSchema,
16
+ stateModel: (0, model_1.default)(pluginManager, configSchema),
17
+ trackType: 'MultiQuantitativeTrack',
18
+ viewType: 'LinearGenomeView',
19
+ ReactComponent: WiggleDisplayComponent_1.default,
20
+ });
21
+ });
22
+ });
23
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,gGAAyE;AAEzE,uEAAuD;AACvD,yDAAyC;AACzC,+FAAgE;AAEhE,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAAC;QAC3B,IAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,YAAY,cAAA;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,kCAAA;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,EAAA"}
@@ -0,0 +1,2 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
@@ -0,0 +1,77 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ var configuration_1 = require("@jbrowse/core/configuration");
4
+ var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
5
+ var mobx_state_tree_1 = require("mobx-state-tree");
6
+ function WiggleConfigFactory(pluginManager) {
7
+ var MultiXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiXYPlotRenderer').configSchema;
8
+ var MultiDensityRendererConfigSchema = pluginManager.getRendererType('MultiDensityRenderer').configSchema;
9
+ var MultiRowXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiRowXYPlotRenderer').configSchema;
10
+ var MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
11
+ var MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
12
+ return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
13
+ autoscale: {
14
+ type: 'stringEnum',
15
+ defaultValue: 'local',
16
+ model: mobx_state_tree_1.types.enumeration('Autoscale type', [
17
+ 'global',
18
+ 'local',
19
+ 'globalsd',
20
+ 'localsd',
21
+ 'zscore',
22
+ ]),
23
+ description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
24
+ },
25
+ minimalTicks: {
26
+ type: 'boolean',
27
+ defaultValue: false,
28
+ description: 'use the minimal amount of ticks',
29
+ },
30
+ minScore: {
31
+ type: 'number',
32
+ defaultValue: Number.MIN_VALUE,
33
+ description: 'minimum value for the y-scale',
34
+ },
35
+ maxScore: {
36
+ type: 'number',
37
+ description: 'maximum value for the y-scale',
38
+ defaultValue: Number.MAX_VALUE,
39
+ },
40
+ numStdDev: {
41
+ type: 'number',
42
+ description: 'number of standard deviations to use for autoscale types globalsd or localsd',
43
+ defaultValue: 3,
44
+ },
45
+ scaleType: {
46
+ type: 'stringEnum',
47
+ model: mobx_state_tree_1.types.enumeration('Scale type', ['linear', 'log']),
48
+ description: 'The type of scale to use',
49
+ defaultValue: 'linear',
50
+ },
51
+ inverted: {
52
+ type: 'boolean',
53
+ description: 'draw upside down',
54
+ defaultValue: false,
55
+ },
56
+ defaultRendering: {
57
+ type: 'stringEnum',
58
+ model: mobx_state_tree_1.types.enumeration('Rendering', [
59
+ 'multirowxy',
60
+ 'xyplot',
61
+ 'multirowdensity',
62
+ 'multiline',
63
+ 'multirowline',
64
+ ]),
65
+ defaultValue: 'multirowxy',
66
+ },
67
+ renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
68
+ MultiXYPlotRenderer: MultiXYPlotRendererConfigSchema,
69
+ MultiDensityRenderer: MultiDensityRendererConfigSchema,
70
+ MultiRowXYPlotRenderer: MultiRowXYPlotRendererConfigSchema,
71
+ MultiLineRenderer: MultiLineRendererConfigSchema,
72
+ MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
73
+ }),
74
+ }, { baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema, explicitlyTyped: true });
75
+ }
76
+ exports.default = WiggleConfigFactory;
77
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
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