@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/esm/MultiXYPlotRenderer/configSchema.js

@@ -0,0 +1,26 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import { types } from 'mobx-state-tree';
+import ConfigSchema from '../configSchema';
+const configSchema = ConfigurationSchema('MultiXYPlotRenderer', {
+    filled: {
+        type: 'boolean',
+        defaultValue: true,
+    },
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'avg',
+    },
+    minSize: {
+        type: 'number',
+        defaultValue: 0,
+    },
+}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
+export default configSchema;
+//# sourceMappingURL=configSchema.js.map

package/esm/MultiXYPlotRenderer/configSchema.js.map

@@ -0,0 +1 @@
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package/esm/MultiXYPlotRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/MultiXYPlotRenderer/index.js

@@ -0,0 +1,12 @@
+import ReactComponent from '../MultiWiggleRendering';
+import MultiXYPlotRenderer from './MultiXYPlotRenderer';
+import configSchema from './configSchema';
+export default (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiXYPlotRenderer({
+        name: 'MultiXYPlotRenderer',
+        ReactComponent,
+        configSchema,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/MultiXYPlotRenderer/index.js.map

@@ -0,0 +1 @@
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package/esm/QuantitativeTrack/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/QuantitativeTrack/index.js

@@ -0,0 +1,14 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import { createBaseTrackConfig, createBaseTrackModel, } from '@jbrowse/core/pluggableElementTypes/models';
+import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
+export default (pluginManager) => {
+    pluginManager.addTrackType(() => {
+        const configSchema = ConfigurationSchema('QuantitativeTrack', {}, { baseConfiguration: createBaseTrackConfig(pluginManager) });
+        return new TrackType({
+            name: 'QuantitativeTrack',
+            configSchema,
+            stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
+        });
+    });
+};
+//# sourceMappingURL=index.js.map

package/esm/QuantitativeTrack/index.js.map

@@ -0,0 +1 @@
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package/esm/Tooltip.d.ts

@@ -0,0 +1,20 @@
+import React from 'react';
+import { Feature } from '@jbrowse/core/util';
+declare type Coord = [number, number];
+export declare type TooltipContentsComponent = React.ForwardRefExoticComponent<{
+    feature: Feature;
+    model: any;
+} & React.RefAttributes<HTMLDivElement>>;
+declare function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, useClientY, }: {
+    model: {
+        featureUnderMouse: Feature;
+    };
+    useClientY?: boolean;
+    height: number;
+    clientMouseCoord: Coord;
+    offsetMouseCoord: Coord;
+    clientRect?: DOMRect;
+    TooltipContents: TooltipContentsComponent;
+}): JSX.Element | null;
+declare const _default: typeof Tooltip;
+export default _default;

package/esm/Tooltip.js

@@ -0,0 +1,71 @@
+import React, { useMemo, useState } from 'react';
+import { observer } from 'mobx-react';
+import { alpha, Portal } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+// locals
+import { YSCALEBAR_LABEL_OFFSET, round } from './util';
+import { usePopper } from 'react-popper';
+const useStyles = makeStyles()(theme => ({
+    // these styles come from
+    // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
+    tooltip: {
+        position: 'absolute',
+        pointerEvents: 'none',
+        backgroundColor: alpha(theme.palette.grey[700], 0.9),
+        borderRadius: theme.shape.borderRadius,
+        color: theme.palette.common.white,
+        fontFamily: theme.typography.fontFamily,
+        padding: '4px 8px',
+        fontSize: theme.typography.pxToRem(12),
+        lineHeight: `${round(14 / 10)}em`,
+        maxWidth: 300,
+        wordWrap: 'break-word',
+    },
+    hoverVertical: {
+        background: '#333',
+        border: 'none',
+        width: 1,
+        height: '100%',
+        top: YSCALEBAR_LABEL_OFFSET,
+        cursor: 'default',
+        position: 'absolute',
+        pointerEvents: 'none',
+    },
+}));
+function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, useClientY, }) {
+    const { featureUnderMouse } = model;
+    const [width, setWidth] = useState(0);
+    const [anchorEl, setAnchorEl] = useState(null);
+    const { classes } = useStyles();
+    // must be memoized a la https://github.com/popperjs/react-popper/issues/391
+    const virtElement = useMemo(() => ({
+        getBoundingClientRect: () => {
+            const x = clientMouseCoord[0] + width / 2 + 20;
+            const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
+            return {
+                top: y,
+                left: x,
+                bottom: y,
+                right: x,
+                width: 0,
+                height: 0,
+                x,
+                y,
+                toJSON() { },
+            };
+        },
+    }), [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width, useClientY]);
+    const { styles, attributes } = usePopper(virtElement, anchorEl);
+    return featureUnderMouse ? (React.createElement(React.Fragment, null,
+        React.createElement(Portal, null,
+            React.createElement("div", { ref: setAnchorEl, className: classes.tooltip, 
+                // zIndex needed to go over widget drawer
+                style: { ...styles.popper, zIndex: 100000 }, ...attributes.popper },
+                React.createElement(TooltipContents, { ref: elt => setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0), model: model, feature: featureUnderMouse }))),
+        React.createElement("div", { className: classes.hoverVertical, style: {
+                left: offsetMouseCoord[0],
+                height: height - YSCALEBAR_LABEL_OFFSET * 2,
+            } }))) : null;
+}
+export default observer(Tooltip);
+//# sourceMappingURL=Tooltip.js.map

package/esm/Tooltip.js.map

@@ -0,0 +1 @@
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package/esm/WiggleBaseRenderer.d.ts

@@ -1,8 +1,8 @@
 /// <reference types="react" />
-import { Feature } from '@jbrowse/core/util/simpleFeature';
 import FeatureRendererType, { RenderArgs as FeatureRenderArgs, RenderArgsSerialized, RenderArgsDeserialized as FeatureRenderArgsDeserialized, RenderResults, ResultsSerialized, ResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
+import { Feature } from '@jbrowse/core/util';
 import { ThemeOptions } from '@mui/material';
-import { ScaleOpts } from './util';
+import { ScaleOpts, Source } from './util';
 export interface RenderArgs extends FeatureRenderArgs {
     scaleOpts: ScaleOpts;
 }
@@ -20,36 +20,35 @@ export interface RenderArgsDeserialized extends FeatureRenderArgsDeserialized {
 export interface RenderArgsDeserializedWithFeatures extends RenderArgsDeserialized {
     features: Map<string, Feature>;
 }
+export interface MultiRenderArgsDeserialized extends RenderArgsDeserializedWithFeatures {
+    sources: Source[];
+}
 export type { RenderArgsSerialized, RenderResults, ResultsSerialized, ResultsDeserialized, };
 export default abstract class WiggleBaseRenderer extends FeatureRendererType {
     supportsSVG: boolean;
     render(renderProps: RenderArgsDeserialized): Promise<{
-        features: Map<string, Feature>;
+        features: any;
         containsNoTransferables: boolean;
         height: number;
         width: number;
         canvasRecordedData: any;
         reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        imageData?: undefined;
         html?: string | undefined;
     } | {
-        features: Map<string, Feature>;
+        features: any;
         containsNoTransferables: boolean;
         height: number;
         width: number;
         reactElement: JSX.Element;
-        canvasRecordedData?: undefined;
-        imageData?: undefined;
         html?: string | undefined;
     } | {
-        features: Map<string, Feature>;
+        features: any;
         containsNoTransferables: boolean;
         height: number;
         width: number;
         imageData: any;
-        canvasRecordedData?: undefined;
         reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         html?: string | undefined;
     }>;
-    abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): Promise<void>;
+    abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): Promise<Record<string, unknown> | void>;
 }

package/esm/WiggleBaseRenderer.js

@@ -1,5 +1,5 @@
 import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-import { renderToAbstractCanvas } from '@jbrowse/core/util/offscreenCanvasUtils';
+import { renderToAbstractCanvas } from '@jbrowse/core/util';
 export default class WiggleBaseRenderer extends FeatureRendererType {
     constructor() {
         super(...arguments);
@@ -10,21 +10,23 @@ export default class WiggleBaseRenderer extends FeatureRendererType {
         const { height, regions, bpPerPx } = renderProps;
         const [region] = regions;
         const width = (region.end - region.start) / bpPerPx;
-        const res = await renderToAbstractCanvas(width, height, renderProps, (ctx) => this.draw(ctx, {
+        // @ts-ignore
+        const { reducedFeatures, ...rest } = await renderToAbstractCanvas(width, height, renderProps, ctx => this.draw(ctx, {
             ...renderProps,
             features,
         }));
         const results = await super.render({
             ...renderProps,
-            ...res,
+            ...rest,
             features,
             height,
             width,
         });
         return {
             ...results,
-            ...res,
-            features,
+            ...rest,
+            // @ts-ignore
+            features: reducedFeatures || results.features,
             containsNoTransferables: true,
             height,
             width,

package/esm/WiggleBaseRenderer.js.map

@@ -1 +1 @@
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package/esm/WiggleRPC/rpcMethods.d.ts

@@ -1,6 +1,6 @@
 import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
 import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
-import { Region } from '@jbrowse/core/util/types';
+import { Region } from '@jbrowse/core/util';
 import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
 import { FeatureStats } from '@jbrowse/core/util/stats';
 export declare class WiggleGetGlobalStats extends RpcMethodType {
@@ -29,3 +29,19 @@ export declare class WiggleGetMultiRegionStats extends RpcMethodType {
         bpPerPx: number;
     }, rpcDriverClassName: string): Promise<FeatureStats>;
 }
+export declare class MultiWiggleGetSources extends RpcMethodType {
+    name: string;
+    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
+    serializeArguments(args: RenderArgs & {
+        signal?: AbortSignal;
+        statusCallback?: Function;
+    }, rpcDriverClassName: string): Promise<{}>;
+    execute(args: {
+        adapterConfig: {};
+        signal?: RemoteAbortSignal;
+        sessionId: string;
+        headers?: Record<string, string>;
+        regions: Region[];
+        bpPerPx: number;
+    }, rpcDriverClassName: string): Promise<any>;
+}

package/esm/WiggleRPC/rpcMethods.js

@@ -1,8 +1,8 @@
-import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
 import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
+import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
 import { renameRegionsIfNeeded } from '@jbrowse/core/util';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
 export class WiggleGetGlobalStats extends RpcMethodType {
     constructor() {
         super(...arguments);
@@ -21,9 +21,10 @@ export class WiggleGetGlobalStats extends RpcMethodType {
         };
     }
     async execute(args, rpcDriverClassName) {
+        const pm = this.pluginManager;
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(this.pluginManager, sessionId, adapterConfig);
+        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
         // @ts-ignore
         return dataAdapter.getGlobalStats(deserializedArgs);
     }
@@ -46,25 +47,66 @@ export class WiggleGetMultiRegionStats extends RpcMethodType {
         };
     }
     async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b;
-        const assemblyManager = (_b = (_a = this.pluginManager.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
+        var _a, _b, _c;
+        const pm = this.pluginManager;
+        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
         if (!assemblyManager) {
             return args;
         }
         const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
             ...args,
-            filters: args.filters && args.filters.toJSON().filters,
+            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
         });
         return super.serializeArguments(renamedArgs, rpcDriverClassName);
     }
     async execute(args, rpcDriverClassName) {
+        const pm = this.pluginManager;
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(this.pluginManager, sessionId, adapterConfig);
+        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
         if (dataAdapter instanceof BaseFeatureDataAdapter) {
             return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
         }
         throw new Error('Data adapter not found');
     }
 }
+export class MultiWiggleGetSources extends RpcMethodType {
+    constructor() {
+        super(...arguments);
+        this.name = 'MultiWiggleGetSources';
+    }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    async deserializeArguments(args, rpcDriverClassName) {
+        const l = await super.deserializeArguments(args, rpcDriverClassName);
+        return {
+            ...l,
+            filters: args.filters
+                ? new SerializableFilterChain({
+                    filters: args.filters,
+                })
+                : undefined,
+        };
+    }
+    async serializeArguments(args, rpcDriverClassName) {
+        var _a, _b, _c;
+        const pm = this.pluginManager;
+        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
+        if (!assemblyManager) {
+            return args;
+        }
+        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
+            ...args,
+            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
+        });
+        return super.serializeArguments(renamedArgs, rpcDriverClassName);
+    }
+    async execute(args, rpcDriverClassName) {
+        const pm = this.pluginManager;
+        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
+        const { regions, adapterConfig, sessionId } = deserializedArgs;
+        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
+        // @ts-ignore
+        return dataAdapter.getSources(regions, deserializedArgs);
+    }
+}
 //# sourceMappingURL=rpcMethods.js.map

package/esm/WiggleRPC/rpcMethods.js.map

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package/esm/WiggleRendering.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { Feature } from '@jbrowse/core/util';
 declare function WiggleRendering(props: {
     regions: Region[];
     features: Map<string, Feature>;

package/esm/WiggleRendering.js

@@ -16,20 +16,16 @@ function WiggleRendering(props) {
         const clientBp = region.start + bpPerPx * px;
         let featureUnderMouse;
         for (const feature of features.values()) {
-            if (clientBp <= feature.get('end') && clientBp >= feature.get('start')) {
+            // bpPerPx added to the end to accomodate "reduced features" (one feature per px)
+            if (clientBp <= feature.get('end') + bpPerPx &&
+                clientBp >= feature.get('start')) {
                 featureUnderMouse = feature;
                 break;
             }
         }
         return featureUnderMouse;
     }
-    return (React.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: event => {
-            const featureUnderMouse = getFeatureUnderMouse(event.clientX);
-            onMouseMove(event, featureUnderMouse ? featureUnderMouse.id() : undefined);
-        }, onClick: event => {
-            const featureUnderMouse = getFeatureUnderMouse(event.clientX);
-            onFeatureClick(event, featureUnderMouse ? featureUnderMouse.id() : undefined);
-        }, onMouseLeave: event => onMouseLeave(event), role: "presentation", className: "WiggleRendering", style: {
+    return (React.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: event => { var _a; return onMouseMove(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: event => { var _a; return onFeatureClick(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: event => onMouseLeave(event), style: {
             overflow: 'visible',
             position: 'relative',
             height,

package/esm/WiggleRendering.js.map

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package/esm/XYPlotRenderer/XYPlotRenderer.d.ts

@@ -1,4 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
 import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
 export default class XYPlotRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<void>;
+    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
+        reducedFeatures: Feature[];
+    }>;
 }

package/esm/XYPlotRenderer/XYPlotRenderer.js

@@ -1,109 +1,26 @@
 import { readConfObject } from '@jbrowse/core/configuration';
-import { featureSpanPx } from '@jbrowse/core/util';
-import { getOrigin, getScale } from '../util';
+import { drawXY } from '../drawxy';
 import WiggleBaseRenderer from '../WiggleBaseRenderer';
-import { YSCALEBAR_LABEL_OFFSET } from '../LinearWiggleDisplay/models/model';
-function fillRect(ctx, x, y, width, height, color) {
-    if (color) {
-        ctx.fillStyle = String(color);
-    }
-    if (width < 0) {
-        x += width;
-        width = -width;
-    }
-    if (height < 0) {
-        y += height;
-        height = -height;
-    }
-    ctx.fillRect(x, y, width, height);
-}
+import { YSCALEBAR_LABEL_OFFSET } from '../util';
 export default class XYPlotRenderer extends WiggleBaseRenderer {
     async draw(ctx, props) {
-        const { features, bpPerPx, regions, scaleOpts, height: unadjustedHeight, config, ticks, displayCrossHatches, } = props;
-        const Color = await import('color').then(f => f.default);
-        const [region] = regions;
-        const width = (region.end - region.start) / bpPerPx;
-        // eslint-disable-next-line @typescript-eslint/no-explicit-any
-        const rc = (s, rest) => readConfObject(config, s, rest);
+        const { features, config } = props;
         // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
         // wiggle display, and makes the height of the actual drawn area add
         // "padding" to the top and bottom of the display
-        const offset = YSCALEBAR_LABEL_OFFSET;
-        const height = unadjustedHeight - offset * 2;
-        const pivotValue = rc('bicolorPivotValue');
-        const negColor = rc('negColor');
-        const posColor = rc('posColor');
-        const filled = rc('filled');
-        const clipColor = rc('clipColor');
-        const highlightColor = rc('highlightColor');
-        const summaryScoreMode = rc('summaryScoreMode');
-        const scale = getScale({ ...scaleOpts, range: [0, height] });
-        const originY = getOrigin(scaleOpts.scaleType);
-        const [niceMin, niceMax] = scale.domain();
-        const toY = (n) => height - (scale(n) || 0) + offset;
-        const toHeight = (n) => toY(originY) - toY(n);
-        const colorCallback = rc('color') === '#f0f'
-            ? (_, score) => score < pivotValue ? negColor : posColor
-            : (feature, _score) => rc('color', { feature });
-        const crossingOrigin = niceMin < pivotValue && niceMax > pivotValue;
-        for (const feature of features.values()) {
-            const [leftPx, rightPx] = featureSpanPx(feature, region, bpPerPx);
-            let score = feature.get('score');
-            const maxr = feature.get('maxScore');
-            const minr = feature.get('minScore');
-            const lowClipping = score < niceMin;
-            const highClipping = score > niceMax;
-            const w = rightPx - leftPx + 0.4; // fudge factor for subpixel rendering
-            const summary = feature.get('summary');
-            if (summaryScoreMode === 'max') {
-                score = summary ? maxr : score;
-                fillRect(ctx, leftPx, toY(score), w, filled ? toHeight(score) : 1, colorCallback(feature, score));
-            }
-            else if (summaryScoreMode === 'min') {
-                score = summary ? minr : score;
-                fillRect(ctx, leftPx, toY(score), w, filled ? toHeight(score) : 1, colorCallback(feature, score));
-            }
-            else if (summaryScoreMode === 'whiskers') {
-                const c = colorCallback(feature, score);
-                if (summary) {
-                    fillRect(ctx, leftPx, toY(maxr), w, filled ? toHeight(maxr) - toHeight(score) : 1, crossingOrigin
-                        ? colorCallback(feature, maxr)
-                        : Color(c).lighten(0.6));
-                }
-                // normal
-                fillRect(ctx, leftPx, toY(score), w, filled ? toHeight(score) - (summary ? toHeight(minr) : 0) : 1, crossingOrigin && summary
-                    ? Color(colorCallback(feature, maxr)).mix(Color(colorCallback(feature, minr)))
-                    : c);
-                // min
-                if (summary) {
-                    fillRect(ctx, leftPx, toY(minr), w, filled ? toHeight(minr) : 1, crossingOrigin
-                        ? colorCallback(feature, minr)
-                        : Color(c).darken(0.6));
-                }
-            }
-            else {
-                fillRect(ctx, leftPx, toY(score), w, filled ? toHeight(score) : 1, colorCallback(feature, score));
-            }
-            if (highClipping) {
-                fillRect(ctx, leftPx, 0, w, 4, clipColor);
-            }
-            else if (lowClipping && scaleOpts.scaleType !== 'log') {
-                fillRect(ctx, leftPx, unadjustedHeight - 4, w, 4, clipColor);
-            }
-            if (feature.get('highlighted')) {
-                fillRect(ctx, leftPx, 0, w, height, highlightColor);
-            }
-        }
-        if (displayCrossHatches) {
-            ctx.lineWidth = 1;
-            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
-            ticks.values.forEach(tick => {
-                ctx.beginPath();
-                ctx.moveTo(0, Math.round(toY(tick)));
-                ctx.lineTo(width, Math.round(toY(tick)));
-                ctx.stroke();
-            });
-        }
+        const pivotValue = readConfObject(config, 'bicolorPivotValue');
+        const negColor = readConfObject(config, 'negColor');
+        const posColor = readConfObject(config, 'posColor');
+        const Color = await import('color').then(f => f.default);
+        return drawXY(ctx, {
+            ...props,
+            colorCallback: readConfObject(config, 'color') === '#f0f'
+                ? (_, score) => score < pivotValue ? negColor : posColor
+                : (feature, _score) => readConfObject(config, 'color', { feature }),
+            offset: YSCALEBAR_LABEL_OFFSET,
+            features: [...features.values()],
+            Color,
+        });
     }
 }
 //# sourceMappingURL=XYPlotRenderer.js.map

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+{"version":3,"file":"XYPlotRenderer.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/XYPlotRenderer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAE5D,OAAO,EAAE,MAAM,EAAE,MAAM,WAAW,CAAA;AAClC,OAAO,kBAEN,MAAM,uBAAuB,CAAA;AAC9B,OAAO,EAAE,sBAAsB,EAAE,MAAM,SAAS,CAAA;AAEhD,MAAM,CAAC,OAAO,OAAO,cAAe,SAAQ,kBAAkB;IAC5D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;QAElC,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;QAC9D,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QAExD,OAAO,MAAM,CAAC,GAAG,EAAE;YACjB,GAAG,KAAK;YACR,aAAa,EACX,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,MAAM;gBACxC,CAAC,CAAC,CAAC,CAAU,EAAE,KAAa,EAAE,EAAE,CAC5B,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ;gBAC5C,CAAC,CAAC,CAAC,OAAgB,EAAE,MAAc,EAAE,EAAE,CACnC,cAAc,CAAC,MAAM,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,CAAC;YACpD,MAAM,EAAE,sBAAsB;YAC9B,QAAQ,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC;YAChC,KAAK;SACN,CAAC,CAAA;IACJ,CAAC;CACF"}

package/esm/XYPlotRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;