@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/esm/index.d.ts

@@ -4,11 +4,12 @@ import PluginManager from '@jbrowse/core/PluginManager';
 import WiggleBaseRenderer from './WiggleBaseRenderer';
 import WiggleRendering from './WiggleRendering';
 import * as utils from './util';
-import { modelFactory as linearWiggleDisplayModelFactory, ReactComponent as LinearWiggleDisplayReactComponent, YSCALEBAR_LABEL_OFFSET } from './LinearWiggleDisplay';
-import XYPlotRenderer from './XYPlotRenderer';
+import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, Tooltip } from './LinearWiggleDisplay';
+import { TooltipContentsComponent } from './Tooltip';
+import { XYPlotRenderer } from './XYPlotRenderer';
 export default class WigglePlugin extends Plugin {
     name: string;
-    install(pluginManager: PluginManager): void;
+    install(pm: PluginManager): void;
     exports: {
         LinearWiggleDisplayReactComponent: (props: {
             model: {
@@ -113,6 +114,7 @@ export default class WigglePlugin extends Plugin {
                 selectedRendering: string;
                 resolution: number;
                 fill: boolean | undefined;
+                minSize: number | undefined;
                 color: string | undefined;
                 posColor: string | undefined;
                 negColor: string | undefined;
@@ -261,7 +263,7 @@ export default class WigglePlugin extends Plugin {
                 };
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats({ scoreMin, scoreMax, }: {
+                updateStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -271,7 +273,7 @@ export default class WigglePlugin extends Plugin {
                 setLoading(aborter: AbortController): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 setResolution(res: number): void;
-                setFill(fill: boolean): void;
+                setFill(fill: number): void;
                 toggleLogScale(): void;
                 setScaleType(scale?: string | undefined): void;
                 setSummaryScoreMode(val: string): void;
@@ -284,6 +286,7 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly TooltipComponent: import("react").FC<{}>;
                 readonly adapterTypeName: any;
+                readonly rendererTypeNameSimple: any;
                 readonly rendererTypeName: string;
                 readonly filters: undefined;
                 readonly scaleType: any;
@@ -310,18 +313,36 @@ export default class WigglePlugin extends Plugin {
                 readonly autoscaleType: any;
                 readonly displayCrossHatchesSetting: any;
             } & {
-                readonly ticks: any;
+                readonly ticks: {
+                    range: number[];
+                    values: number[];
+                    format: (d: import("d3-scale").NumberValue) => string;
+                    position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                };
+                readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
-                readonly adapterCapabilities: string[];
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
+                readonly fillSetting: 2 | 1 | 0;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                    label: string;
+                    subMenu: {
+                        label: string;
+                        type: string;
+                        checked: boolean;
+                        onClick: () => void;
+                    }[];
+                    type?: undefined;
+                    checked?: undefined;
+                    onClick?: undefined;
+                } | {
                     type: string;
                     label: string;
                     checked: any;
                     onClick: () => void;
+                    subMenu?: undefined;
                 })[];
             } & {
                 reload(): Promise<void>;
@@ -389,6 +410,7 @@ export default class WigglePlugin extends Plugin {
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
                 fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+                minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
                 posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
                 negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -534,7 +556,7 @@ export default class WigglePlugin extends Plugin {
                 };
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats({ scoreMin, scoreMax, }: {
+                updateStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -544,7 +566,7 @@ export default class WigglePlugin extends Plugin {
                 setLoading(aborter: AbortController): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 setResolution(res: number): void;
-                setFill(fill: boolean): void;
+                setFill(fill: number): void;
                 toggleLogScale(): void;
                 setScaleType(scale?: string | undefined): void;
                 setSummaryScoreMode(val: string): void;
@@ -557,6 +579,7 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly TooltipComponent: import("react").FC<{}>;
                 readonly adapterTypeName: any;
+                readonly rendererTypeNameSimple: any;
                 readonly rendererTypeName: string;
                 readonly filters: undefined;
                 readonly scaleType: any;
@@ -583,18 +606,36 @@ export default class WigglePlugin extends Plugin {
                 readonly autoscaleType: any;
                 readonly displayCrossHatchesSetting: any;
             } & {
-                readonly ticks: any;
+                readonly ticks: {
+                    range: number[];
+                    values: number[];
+                    format: (d: import("d3-scale").NumberValue) => string;
+                    position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                };
+                readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
-                readonly adapterCapabilities: string[];
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
+                readonly fillSetting: 2 | 1 | 0;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                    label: string;
+                    subMenu: {
+                        label: string;
+                        type: string;
+                        checked: boolean;
+                        onClick: () => void;
+                    }[];
+                    type?: undefined;
+                    checked?: undefined;
+                    onClick?: undefined;
+                } | {
                     type: string;
                     label: string;
                     checked: any;
                     onClick: () => void;
+                    subMenu?: undefined;
                 })[];
             } & {
                 reload(): Promise<void>;
@@ -623,9 +664,9 @@ export default class WigglePlugin extends Plugin {
             blockKey: string;
         }) => JSX.Element;
         XYPlotRenderer: typeof XYPlotRenderer;
+        WiggleBaseRenderer: typeof WiggleBaseRenderer;
         xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         utils: typeof utils;
-        WiggleBaseRenderer: typeof WiggleBaseRenderer;
         linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -686,6 +727,7 @@ export default class WigglePlugin extends Plugin {
             selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
             fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+            minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
             color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -831,7 +873,7 @@ export default class WigglePlugin extends Plugin {
             };
             statsFetchInProgress: AbortController | undefined;
         } & {
-            updateStats({ scoreMin, scoreMax, }: {
+            updateStats(stats: {
                 scoreMin: number;
                 scoreMax: number;
             }): void;
@@ -841,7 +883,7 @@ export default class WigglePlugin extends Plugin {
             setLoading(aborter: AbortController): void;
             selectFeature(feature: import("@jbrowse/core/util").Feature): void;
             setResolution(res: number): void;
-            setFill(fill: boolean): void;
+            setFill(fill: number): void;
             toggleLogScale(): void;
             setScaleType(scale?: string | undefined): void;
             setSummaryScoreMode(val: string): void;
@@ -854,6 +896,7 @@ export default class WigglePlugin extends Plugin {
         } & {
             readonly TooltipComponent: import("react").FC<{}>;
             readonly adapterTypeName: any;
+            readonly rendererTypeNameSimple: any;
             readonly rendererTypeName: string;
             readonly filters: undefined;
             readonly scaleType: any;
@@ -880,18 +923,36 @@ export default class WigglePlugin extends Plugin {
             readonly autoscaleType: any;
             readonly displayCrossHatchesSetting: any;
         } & {
-            readonly ticks: any;
+            readonly ticks: {
+                range: number[];
+                values: number[];
+                format: (d: import("d3-scale").NumberValue) => string;
+                position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+            };
+            readonly adapterCapabilities: string[];
         } & {
             renderProps(): any;
-            readonly adapterCapabilities: string[];
             readonly hasResolution: boolean;
             readonly hasGlobalStats: boolean;
+            readonly fillSetting: 2 | 1 | 0;
         } & {
             trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                label: string;
+                subMenu: {
+                    label: string;
+                    type: string;
+                    checked: boolean;
+                    onClick: () => void;
+                }[];
+                type?: undefined;
+                checked?: undefined;
+                onClick?: undefined;
+            } | {
                 type: string;
                 label: string;
                 checked: any;
                 onClick: () => void;
+                subMenu?: undefined;
             })[];
         } & {
             reload(): Promise<void>;
@@ -910,8 +971,5 @@ export default class WigglePlugin extends Plugin {
     };
 }
 export * from './util';
-export { WiggleRendering };
-export { WiggleBaseRenderer };
-export { LinearWiggleDisplayReactComponent, linearWiggleDisplayModelFactory };
-export { Tooltip } from './LinearWiggleDisplay/components/Tooltip';
-export { YSCALEBAR_LABEL_OFFSET };
+export { LinearWiggleDisplayReactComponent, Tooltip, WiggleRendering, WiggleBaseRenderer, linearWiggleDisplayModelFactory, };
+export type { TooltipContentsComponent };

package/esm/index.js

@@ -1,19 +1,28 @@
-import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
-import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
 import Plugin from '@jbrowse/core/Plugin';
-import { ConfigurationSchema } from '@jbrowse/core/configuration';
-import { createBaseTrackConfig, createBaseTrackModel, } from '@jbrowse/core/pluggableElementTypes/models';
-import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
+import { getFileName, } from '@jbrowse/core/util/tracks';
+// locals
 import WiggleBaseRenderer from './WiggleBaseRenderer';
 import WiggleRendering from './WiggleRendering';
-import { configSchema as bigWigAdapterConfigSchema } from './BigWigAdapter';
-import DensityRenderer, { configSchema as densityRendererConfigSchema, ReactComponent as DensityRendererReactComponent, } from './DensityRenderer';
+import BigWigAdapterF from './BigWigAdapter';
+import QuantitativeTrackF from './QuantitativeTrack';
+import MultiQuantitativeTrackF from './MultiQuantitativeTrack';
+import MultiWiggleAdapterF from './MultiWiggleAdapter';
+import DensityRendererF from './DensityRenderer';
+import XYPlotRendererF from './XYPlotRenderer';
+import LinePlotRendererF from './LinePlotRenderer';
+import LinearWiggleDisplayF from './LinearWiggleDisplay';
+import MultiLinearWiggleDisplayF from './MultiLinearWiggleDisplay';
+import MultiXYPlotRendererF from './MultiXYPlotRenderer';
+import MultiRowXYPlotRendererF from './MultiRowXYPlotRenderer';
+import MultiDensityRendererF from './MultiDensityRenderer';
+import MultiLineRendererF from './MultiLineRenderer';
+import MultiRowLineRendererF from './MultiRowLineRenderer';
+import CreateMultiWiggleExtensionF from './CreateMultiWiggleExtension';
+import MultiWiggleAddTrackWidgetF from './MultiWiggleAddTrackWidget';
 import * as utils from './util';
-import { configSchemaFactory as linearWiggleDisplayConfigSchemaFactory, modelFactory as linearWiggleDisplayModelFactory, ReactComponent as LinearWiggleDisplayReactComponent, YSCALEBAR_LABEL_OFFSET, } from './LinearWiggleDisplay';
-import XYPlotRenderer, { configSchema as xyPlotRendererConfigSchema, ReactComponent as XYPlotRendererReactComponent, } from './XYPlotRenderer';
-import LinePlotRenderer, { configSchema as linePlotRendererConfigSchema, ReactComponent as LinePlotRendererReactComponent, } from './LinePlotRenderer';
-import { WiggleGetGlobalStats, WiggleGetMultiRegionStats, } from './WiggleRPC/rpcMethods';
-import { getFileName, } from '@jbrowse/core/util/tracks';
+import { WiggleGetGlobalStats, WiggleGetMultiRegionStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
+import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, Tooltip, } from './LinearWiggleDisplay';
+import { ReactComponent as XYPlotRendererReactComponent, configSchema as xyPlotRendererConfigSchema, XYPlotRenderer, } from './XYPlotRenderer';
 export default class WigglePlugin extends Plugin {
     constructor() {
         super(...arguments);
@@ -22,44 +31,31 @@ export default class WigglePlugin extends Plugin {
             LinearWiggleDisplayReactComponent,
             XYPlotRendererReactComponent,
             XYPlotRenderer,
+            WiggleBaseRenderer,
             xyPlotRendererConfigSchema,
             utils,
-            WiggleBaseRenderer,
             linearWiggleDisplayModelFactory,
         };
     }
-    install(pluginManager) {
-        pluginManager.addTrackType(() => {
-            const configSchema = ConfigurationSchema('QuantitativeTrack', {}, { baseConfiguration: createBaseTrackConfig(pluginManager) });
-            return new TrackType({
-                name: 'QuantitativeTrack',
-                configSchema,
-                stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
-            });
-        });
-        pluginManager.addDisplayType(() => {
-            const configSchema = linearWiggleDisplayConfigSchemaFactory(pluginManager);
-            return new DisplayType({
-                name: 'LinearWiggleDisplay',
-                configSchema,
-                stateModel: linearWiggleDisplayModelFactory(pluginManager, configSchema),
-                trackType: 'QuantitativeTrack',
-                viewType: 'LinearGenomeView',
-                ReactComponent: LinearWiggleDisplayReactComponent,
-            });
-        });
-        pluginManager.addAdapterType(() => new AdapterType({
-            name: 'BigWigAdapter',
-            configSchema: bigWigAdapterConfigSchema,
-            adapterCapabilities: [
-                'hasResolution',
-                'hasLocalStats',
-                'hasGlobalStats',
-            ],
-            getAdapterClass: () => import('./BigWigAdapter/BigWigAdapter').then(r => r.default),
-        }));
-        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
-            return (file, index, adapterHint) => {
+    install(pm) {
+        MultiWiggleAdapterF(pm);
+        BigWigAdapterF(pm);
+        QuantitativeTrackF(pm);
+        MultiQuantitativeTrackF(pm);
+        LinearWiggleDisplayF(pm);
+        MultiLinearWiggleDisplayF(pm);
+        LinePlotRendererF(pm);
+        XYPlotRendererF(pm);
+        DensityRendererF(pm);
+        MultiXYPlotRendererF(pm);
+        MultiRowXYPlotRendererF(pm);
+        MultiDensityRendererF(pm);
+        MultiLineRendererF(pm);
+        MultiRowLineRendererF(pm);
+        MultiWiggleAddTrackWidgetF(pm);
+        CreateMultiWiggleExtensionF(pm);
+        pm.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
+            return (file, index, hint) => {
                 const regexGuess = /\.(bw|bigwig)$/i;
                 const adapterName = 'BigWigAdapter';
                 const fileName = getFileName(file);
@@ -67,16 +63,16 @@ export default class WigglePlugin extends Plugin {
                     type: adapterName,
                     bigWigLocation: file,
                 };
-                if (regexGuess.test(fileName) && !adapterHint) {
+                if (regexGuess.test(fileName) && !hint) {
                     return obj;
                 }
-                else if (adapterHint === adapterName) {
+                else if (hint === adapterName) {
                     return obj;
                 }
-                return adapterGuesser(file, index, adapterHint);
+                return cb(file, index, hint);
             };
         });
-        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
+        pm.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
             return (adapterName) => {
                 if (adapterName === 'BigWigAdapter') {
                     return 'QuantitativeTrack';
@@ -84,32 +80,11 @@ export default class WigglePlugin extends Plugin {
                 return trackTypeGuesser(adapterName);
             };
         });
-        pluginManager.addRendererType(() => new DensityRenderer({
-            name: 'DensityRenderer',
-            ReactComponent: DensityRendererReactComponent,
-            configSchema: densityRendererConfigSchema,
-            pluginManager,
-        }));
-        pluginManager.addRendererType(() => new LinePlotRenderer({
-            name: 'LinePlotRenderer',
-            ReactComponent: LinePlotRendererReactComponent,
-            configSchema: linePlotRendererConfigSchema,
-            pluginManager,
-        }));
-        pluginManager.addRendererType(() => new XYPlotRenderer({
-            name: 'XYPlotRenderer',
-            ReactComponent: XYPlotRendererReactComponent,
-            configSchema: xyPlotRendererConfigSchema,
-            pluginManager,
-        }));
-        pluginManager.addRpcMethod(() => new WiggleGetGlobalStats(pluginManager));
-        pluginManager.addRpcMethod(() => new WiggleGetMultiRegionStats(pluginManager));
+        pm.addRpcMethod(() => new WiggleGetGlobalStats(pm));
+        pm.addRpcMethod(() => new WiggleGetMultiRegionStats(pm));
+        pm.addRpcMethod(() => new MultiWiggleGetSources(pm));
     }
 }
 export * from './util';
-export { WiggleRendering };
-export { WiggleBaseRenderer };
-export { LinearWiggleDisplayReactComponent, linearWiggleDisplayModelFactory };
-export { Tooltip } from './LinearWiggleDisplay/components/Tooltip';
-export { YSCALEBAR_LABEL_OFFSET };
+export { LinearWiggleDisplayReactComponent, Tooltip, WiggleRendering, WiggleBaseRenderer, linearWiggleDisplayModelFactory, };
 //# sourceMappingURL=index.js.map

package/esm/index.js.map

@@ -1 +1 @@
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package/esm/util.d.ts

@@ -1,3 +1,6 @@
+import { FeatureStats } from '@jbrowse/core/util/stats';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+export declare const YSCALEBAR_LABEL_OFFSET = 5;
 export interface ScaleOpts {
     domain: number[];
     range: number[];
@@ -5,6 +8,11 @@ export interface ScaleOpts {
     pivotValue?: number;
     inverted: boolean;
 }
+export interface Source {
+    name: string;
+    color?: string;
+    group?: string;
+}
 /**
  * produces a d3-scale from arguments. applies a "nice domain" adjustment
  *
@@ -16,7 +24,7 @@ export interface ScaleOpts {
  *   - pivotValue (number)
  *   - inverted (boolean)
  */
-export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number> | import("d3-scale").ScaleQuantize<number>;
+export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
 /**
  * gets the origin for drawing the graph. for linear this is 0, for log this is arbitrarily set to log(1)==0
  *
@@ -39,3 +47,28 @@ export declare function getNiceDomain({ scaleType, domain, bounds, }: {
     domain: number[];
     bounds: number[];
 }): [number, number];
+export declare function groupBy<T>(array: T[], predicate: (v: T) => string): {
+    [key: string]: T[];
+};
+export declare function getStats(self: {
+    adapterConfig: AnyConfigurationModel;
+    autoscaleType: string;
+    setMessage: (str: string) => void;
+}, opts: {
+    headers?: Record<string, string>;
+    signal?: AbortSignal;
+    filters?: string[];
+}): Promise<FeatureStats>;
+export declare function statsAutorun(self: {
+    estimatedStatsReady: boolean;
+    regionTooLarge: boolean;
+    setLoading: (aborter: AbortController) => void;
+    setError: (error: unknown) => void;
+    updateStats: (stats: FeatureStats, statsRegion: string) => void;
+    renderProps: () => Record<string, unknown>;
+    adapterConfig: AnyConfigurationModel;
+    autoscaleType: string;
+    setMessage: (str: string) => void;
+}): void;
+export declare function toP(s?: number): number;
+export declare function round(value: number): number;

package/esm/util.js

@@ -1,4 +1,10 @@
 import { scaleLinear, scaleLog, scaleQuantize } from 'd3-scale';
+import { autorun } from 'mobx';
+import { isAbortException, getSession, getContainingView, } from '@jbrowse/core/util';
+import { getRpcSessionId } from '@jbrowse/core/util/tracks';
+import { addDisposer, isAlive } from 'mobx-state-tree';
+import { getConf } from '@jbrowse/core/configuration';
+export const YSCALEBAR_LABEL_OFFSET = 5;
 /**
  * produces a d3-scale from arguments. applies a "nice domain" adjustment
  *
@@ -120,4 +126,106 @@ export function getNiceDomain({ scaleType, domain, bounds, }) {
     scale.nice();
     return scale.domain();
 }
+export function groupBy(array, predicate) {
+    return array.reduce((acc, value) => {
+        var _a;
+        const entry = (acc[_a = predicate(value)] || (acc[_a] = []));
+        entry.push(value);
+        return acc;
+    }, {});
+}
+export async function getStats(self, opts) {
+    const { rpcManager } = getSession(self);
+    const nd = getConf(self, 'numStdDev') || 3;
+    const { adapterConfig, autoscaleType } = self;
+    const sessionId = getRpcSessionId(self);
+    const params = {
+        sessionId,
+        adapterConfig,
+        statusCallback: (message) => {
+            if (isAlive(self)) {
+                self.setMessage(message);
+            }
+        },
+        ...opts,
+    };
+    if (autoscaleType === 'global' || autoscaleType === 'globalsd') {
+        const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalStats', params));
+        const { scoreMin, scoreMean, scoreStdDev } = results;
+        // globalsd uses heuristic to avoid unnecessary scoreMin<0
+        // if the scoreMin is never less than 0
+        // helps with most coverage bigwigs just being >0
+        return autoscaleType === 'globalsd'
+            ? {
+                ...results,
+                scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev,
+                scoreMax: scoreMean + nd * scoreStdDev,
+            }
+            : results;
+    }
+    if (autoscaleType === 'local' || autoscaleType === 'localsd') {
+        const { dynamicBlocks, bpPerPx } = getContainingView(self);
+        const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', {
+            ...params,
+            regions: dynamicBlocks.contentBlocks.map(region => {
+                const { start, end } = region;
+                return {
+                    ...JSON.parse(JSON.stringify(region)),
+                    start: Math.floor(start),
+                    end: Math.ceil(end),
+                };
+            }),
+            bpPerPx,
+        }));
+        const { scoreMin, scoreMean, scoreStdDev } = results;
+        // localsd uses heuristic to avoid unnecessary scoreMin<0 if the
+        // scoreMin is never less than 0 helps with most coverage bigwigs
+        // just being >0
+        return autoscaleType === 'localsd'
+            ? {
+                ...results,
+                scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev,
+                scoreMax: scoreMean + nd * scoreStdDev,
+            }
+            : results;
+    }
+    if (autoscaleType === 'zscale') {
+        return rpcManager.call(sessionId, 'WiggleGetGlobalStats', params);
+    }
+    throw new Error(`invalid autoscaleType '${autoscaleType}'`);
+}
+export function statsAutorun(self) {
+    addDisposer(self, autorun(async () => {
+        try {
+            const aborter = new AbortController();
+            const view = getContainingView(self);
+            self.setLoading(aborter);
+            if (!view.initialized ||
+                !self.estimatedStatsReady ||
+                self.regionTooLarge) {
+                return;
+            }
+            const statsRegion = JSON.stringify(view.dynamicBlocks);
+            const wiggleStats = await getStats(self, {
+                signal: aborter.signal,
+                ...self.renderProps(),
+            });
+            if (isAlive(self)) {
+                self.updateStats(wiggleStats, statsRegion);
+            }
+        }
+        catch (e) {
+            if (!isAbortException(e) && isAlive(self)) {
+                console.error(e);
+                self.setError(e);
+            }
+        }
+    }, { delay: 1000 }));
+}
+export function toP(s = 0) {
+    return +(+s).toPrecision(6);
+}
+export function round(value) {
+    return Math.round(value * 1e5) / 1e5;
+}
 //# sourceMappingURL=util.js.map

package/esm/util.js.map

@@ -1 +1 @@
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