@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/esm/MultiRowLineRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/esm/MultiRowLineRenderer/configSchema.js

@@ -0,0 +1,18 @@
+import { types } from 'mobx-state-tree';
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import ConfigSchema from '../configSchema';
+const configSchema = ConfigurationSchema('MultiRowLineRenderer', {
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'avg',
+    },
+}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
+export default configSchema;
+//# sourceMappingURL=configSchema.js.map

package/esm/MultiRowLineRenderer/configSchema.js.map

@@ -0,0 +1 @@
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package/esm/MultiRowLineRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/MultiRowLineRenderer/index.js

@@ -0,0 +1,12 @@
+import ReactComponent from '../MultiWiggleRendering';
+import MultiRowLineRenderer from './MultiRowLineRenderer';
+import configSchema from './configSchema';
+export default (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiRowLineRenderer({
+        name: 'MultiRowLineRenderer',
+        ReactComponent,
+        configSchema,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/MultiRowLineRenderer/index.js.map

@@ -0,0 +1 @@
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package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js

@@ -0,0 +1,39 @@
+import { groupBy } from '../util';
+import { drawXY } from '../drawxy';
+import WiggleBaseRenderer from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    // @ts-ignore
+    async draw(ctx, props) {
+        const { bpPerPx, sources, regions, features } = props;
+        const [region] = regions;
+        const groups = groupBy([...features.values()], f => f.get('source'));
+        const height = props.height / Object.keys(groups).length;
+        const width = (region.end - region.start) / bpPerPx;
+        const Color = await import('color').then(f => f.default);
+        let feats = [];
+        ctx.save();
+        sources.forEach(source => {
+            const features = groups[source.name];
+            if (!features) {
+                return;
+            }
+            const { reducedFeatures } = drawXY(ctx, {
+                ...props,
+                features,
+                height,
+                colorCallback: () => source.color || 'blue',
+                Color,
+            });
+            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+            ctx.beginPath();
+            ctx.moveTo(0, height);
+            ctx.lineTo(width, height);
+            ctx.stroke();
+            ctx.translate(0, height);
+            feats = feats.concat(reducedFeatures);
+        });
+        ctx.restore();
+        return { reducedFeatures: feats };
+    }
+}
+//# sourceMappingURL=MultiRowXYPlotRenderer.js.map

package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiRowXYPlotRenderer.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAA;AACjC,OAAO,EAAE,MAAM,EAAE,MAAM,WAAW,CAAA;AAElC,OAAO,kBAEN,MAAM,uBAAuB,CAAA;AAE9B,MAAM,CAAC,OAAO,OAAO,mBAAoB,SAAQ,kBAAkB;IACjE,aAAa;IACb,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,OAAO,CAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QACxD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,CAAC,GAAG,EAAE;gBACtC,GAAG,KAAK;gBACR,QAAQ;gBACR,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;gBAC3C,KAAK;aACN,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;QACvC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF"}

package/esm/MultiRowXYPlotRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/esm/MultiRowXYPlotRenderer/configSchema.js

@@ -0,0 +1,26 @@
+import { types } from 'mobx-state-tree';
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import ConfigSchema from '../configSchema';
+const configSchema = ConfigurationSchema('MultiRowXYPlotRenderer', {
+    filled: {
+        type: 'boolean',
+        defaultValue: true,
+    },
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'whiskers',
+    },
+    minSize: {
+        type: 'number',
+        defaultValue: 0,
+    },
+}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
+export default configSchema;
+//# sourceMappingURL=configSchema.js.map

package/esm/MultiRowXYPlotRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,MAAM,YAAY,GAAG,mBAAmB,CACtC,wBAAwB,EACxB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,UAAU;KACzB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}

package/esm/MultiRowXYPlotRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/MultiRowXYPlotRenderer/index.js

@@ -0,0 +1,12 @@
+import ReactComponent from '../MultiWiggleRendering';
+import MultiRowXYPlotRenderer from './MultiRowXYPlotRenderer';
+import configSchema from './configSchema';
+export default (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiRowXYPlotRenderer({
+        name: 'MultiRowXYPlotRenderer',
+        ReactComponent,
+        configSchema,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/MultiRowXYPlotRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/index.ts"],"names":[],"mappings":"AACA,OAAO,cAAc,MAAM,yBAAyB,CAAA;AACpD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,sBAAsB,CAAC;QACzB,IAAI,EAAE,wBAAwB;QAC9B,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts

@@ -0,0 +1,28 @@
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util';
+interface WiggleOptions extends BaseOptions {
+    resolution?: number;
+}
+interface AdapterEntry {
+    dataAdapter: BaseFeatureDataAdapter;
+    [key: string]: unknown;
+}
+export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
+    static capabilities: string[];
+    getAdapters(): Promise<AdapterEntry[]>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    getGlobalStats(opts?: BaseOptions): Promise<{
+        scoreMin: number;
+        scoreMax: number;
+    }>;
+    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
+    estimateRegionsStats(_regions: Region[]): Promise<{
+        featureDensity: number;
+    }>;
+    getSources(): Promise<{
+        name: unknown;
+    }[]>;
+    freeResources(): void;
+}
+export {};

package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js

@@ -0,0 +1,87 @@
+import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { ObservableCreate } from '@jbrowse/core/util/rxjs';
+import { SimpleFeature } from '@jbrowse/core/util';
+import { merge } from 'rxjs';
+import { map } from 'rxjs/operators';
+function getFilename(uri) {
+    const filename = uri.slice(uri.lastIndexOf('/') + 1);
+    return filename.slice(0, filename.lastIndexOf('.'));
+}
+export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
+    async getAdapters() {
+        const getSubAdapter = this.getSubAdapter;
+        if (!getSubAdapter) {
+            throw new Error('no getSubAdapter available');
+        }
+        let subConfs = this.getConf('subadapters');
+        if (!(subConfs === null || subConfs === void 0 ? void 0 : subConfs.length)) {
+            const entries = this.getConf('bigWigs');
+            subConfs = entries.map(entry => ({
+                type: 'BigWigAdapter',
+                source: getFilename(entry),
+                bigWigLocation: {
+                    uri: entry,
+                },
+            }));
+        }
+        return Promise.all(
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        subConfs.map(async (conf) => {
+            const dataAdapter = (await getSubAdapter(conf))
+                .dataAdapter;
+            return {
+                source: dataAdapter.id,
+                ...conf,
+                dataAdapter,
+            };
+        }));
+    }
+    // note: can't really have dis-agreeing refNames
+    async getRefNames(opts) {
+        const adapters = await this.getAdapters();
+        return adapters[0].dataAdapter.getRefNames(opts);
+    }
+    async getGlobalStats(opts) {
+        const adapters = await this.getAdapters();
+        const stats = (await Promise.all(
+        // @ts-ignore
+        adapters.map(adp => { var _a, _b; return (_b = (_a = adp.dataAdapter).getGlobalStats) === null || _b === void 0 ? void 0 : _b.call(_a, opts); }))).filter(f => !!f);
+        const scoreMin = Math.min(...stats.map(s => s.scoreMin));
+        const scoreMax = Math.max(...stats.map(s => s.scoreMax));
+        return { scoreMin, scoreMax };
+    }
+    getFeatures(region, opts = {}) {
+        return ObservableCreate(async (observer) => {
+            const adapters = await this.getAdapters();
+            merge(...adapters.map(adp => adp.dataAdapter.getFeatures(region, opts).pipe(map(p => 
+            // add source field if it does not exist
+            p.get('source')
+                ? p
+                : new SimpleFeature({
+                    ...p.toJSON(),
+                    uniqueId: adp.source + '-' + p.id(),
+                    source: adp.source,
+                }))))).subscribe(observer);
+        }, opts.signal);
+    }
+    // always render bigwig instead of calculating a feature density for it
+    async estimateRegionsStats(_regions) {
+        return { featureDensity: 0 };
+    }
+    // in another adapter type, this could be dynamic depending on region or
+    // something, but it is static for this particular multi-wiggle adapter type
+    async getSources() {
+        const adapters = await this.getAdapters();
+        return adapters.map(({ dataAdapter, source, ...rest }) => ({
+            name: source,
+            ...rest,
+        }));
+    }
+    freeResources() { }
+}
+MultiWiggleAdapter.capabilities = [
+    'hasResolution',
+    'hasLocalStats',
+    'hasGlobalStats',
+];
+//# sourceMappingURL=MultiWiggleAdapter.js.map

package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map

@@ -0,0 +1 @@
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package/esm/MultiWiggleAdapter/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/esm/MultiWiggleAdapter/configSchema.js

@@ -0,0 +1,12 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+export default ConfigurationSchema('MultiWiggleAdapter', {
+    subadapters: {
+        type: 'frozen',
+        defaultValue: [],
+    },
+    bigWigs: {
+        type: 'frozen',
+        defaultValue: [],
+    },
+}, { explicitlyTyped: true });
+//# sourceMappingURL=configSchema.js.map

package/esm/MultiWiggleAdapter/configSchema.js.map

@@ -0,0 +1 @@
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package/esm/MultiWiggleAdapter/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/MultiWiggleAdapter/index.js

@@ -0,0 +1,15 @@
+import configSchema from './configSchema';
+import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
+export default (pluginManager) => {
+    pluginManager.addAdapterType(() => new AdapterType({
+        name: 'MultiWiggleAdapter',
+        configSchema,
+        adapterCapabilities: [
+            'hasResolution',
+            'hasLocalStats',
+            'hasGlobalStats',
+        ],
+        getAdapterClass: () => import('./MultiWiggleAdapter').then(r => r.default),
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/MultiWiggleAdapter/index.js.map

@@ -0,0 +1 @@
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package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts

@@ -0,0 +1,5 @@
+/// <reference types="react" />
+import { AddTrackModel } from '@jbrowse/plugin-data-management';
+export default function MultiWiggleWidget({ model }: {
+    model: AddTrackModel;
+}): JSX.Element;

package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js

@@ -0,0 +1,87 @@
+import React, { useState } from 'react';
+import { Button, Paper, TextField } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { getSession, isElectron } from '@jbrowse/core/util';
+import { storeBlobLocation } from '@jbrowse/core/util/tracks';
+const useStyles = makeStyles()(theme => ({
+    textbox: {
+        width: '100%',
+    },
+    paper: {
+        margin: theme.spacing(),
+        padding: theme.spacing(),
+    },
+    submit: {
+        marginTop: 25,
+        marginBottom: 100,
+        display: 'block',
+    },
+}));
+export default function MultiWiggleWidget({ model }) {
+    const { classes } = useStyles();
+    const [val, setVal] = useState('');
+    const [trackName, setTrackName] = useState('MultiWiggle ' + Date.now());
+    return (React.createElement(Paper, { className: classes.paper },
+        React.createElement("ul", null,
+            React.createElement("li", null, "Enter list of URLs for bigwig files in the textbox"),
+            React.createElement("li", null, "Or, use the button below the text box to select files from your computer")),
+        React.createElement(TextField, { multiline: true, rows: 10, value: val, onChange: event => setVal(event.target.value), placeholder: 'Paste list of URLs here, or use file selector below', variant: "outlined", className: classes.textbox }),
+        React.createElement(Button, { variant: "outlined", component: "label" },
+            "Choose Files from your computer",
+            React.createElement("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
+                    const res = Array.from((target === null || target === void 0 ? void 0 : target.files) || []).map(file => ({
+                        type: 'BigWigAdapter',
+                        bigWigLocation: isElectron
+                            ? {
+                                localPath: file.path,
+                                locationType: 'LocalPathLocation',
+                            }
+                            : storeBlobLocation({ blob: file }),
+                        source: file.name,
+                    }));
+                    setVal(JSON.stringify(res, null, 2));
+                } })),
+        React.createElement(TextField, { value: trackName, onChange: event => setTrackName(event.target.value), helperText: "Track name" }),
+        React.createElement(Button, { variant: "contained", className: classes.submit, onClick: () => {
+                var _a;
+                const session = getSession(model);
+                const trackId = [
+                    `${trackName.toLowerCase().replace(/ /g, '_')}-${Date.now()}`,
+                    `${session.adminMode ? '' : '-sessionTrack'}`,
+                ].join('');
+                // allow list of bigwigs in JSON format or line-by-line
+                let bigWigs;
+                try {
+                    bigWigs = JSON.parse(val);
+                }
+                catch (e) {
+                    bigWigs = val.split('\n');
+                }
+                const obj = typeof bigWigs[0] === 'string'
+                    ? { bigWigs }
+                    : { subadapters: bigWigs };
+                session.addTrackConf({
+                    trackId,
+                    type: 'MultiQuantitativeTrack',
+                    name: trackName,
+                    assemblyNames: [model.assembly],
+                    adapter: {
+                        type: 'MultiWiggleAdapter',
+                        ...obj,
+                    },
+                });
+                (_a = model.view) === null || _a === void 0 ? void 0 : _a.showTrack(trackId);
+                model.clearData();
+                session.hideWidget(model);
+            } }, "Submit"),
+        React.createElement("p", null, "Additional notes: "),
+        React.createElement("ul", null,
+            React.createElement("li", null,
+                "The list of bigwig files in the text box can be a list of URLs, or a list of elements like",
+                ' ',
+                React.createElement("code", null, `[{"type":"BigWigAdapter","bigWigLocation":{"uri":"http://host/file.bw"}, "color":"green","source":"name for subtrack"}]`),
+                ' ',
+                "to apply e.g. the color attribute to the view"),
+            React.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
+}
+//# sourceMappingURL=AddTrackWorkflow.js.map

package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map

@@ -0,0 +1 @@
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package/esm/MultiWiggleAddTrackWidget/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pm: PluginManager) => void;
+export default _default;

package/esm/MultiWiggleAddTrackWidget/index.js

@@ -0,0 +1,12 @@
+import { AddTrackWorkflowType } from '@jbrowse/core/pluggableElementTypes';
+import { types } from 'mobx-state-tree';
+// locals
+import MultiWiggleWidget from './AddTrackWorkflow';
+export default (pm) => {
+    pm.addAddTrackWorkflowType(() => new AddTrackWorkflowType({
+        name: 'Multi-wiggle track',
+        ReactComponent: MultiWiggleWidget,
+        stateModel: types.model({}),
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/MultiWiggleAddTrackWidget/index.js.map

@@ -0,0 +1 @@
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package/esm/MultiWiggleRendering.d.ts

@@ -0,0 +1,21 @@
+/// <reference types="react" />
+import { Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util';
+import { Source } from './util';
+declare function WiggleRendering(props: {
+    regions: Region[];
+    features: Map<string, Feature>;
+    bpPerPx: number;
+    width: number;
+    height: number;
+    onMouseLeave: Function;
+    onMouseMove: Function;
+    onFeatureClick: Function;
+    blockKey: string;
+    sources: Source[];
+    displayModel: {
+        isMultiRow: boolean;
+    };
+}): JSX.Element;
+declare const _default: typeof WiggleRendering;
+export default _default;

package/esm/MultiWiggleRendering.js

@@ -0,0 +1,75 @@
+import { observer } from 'mobx-react';
+import React, { useRef } from 'react';
+import { SimpleFeature } from '@jbrowse/core/util';
+import { PrerenderedCanvas } from '@jbrowse/core/ui';
+function WiggleRendering(props) {
+    const { regions, features, bpPerPx, width, height, sources, onMouseLeave = () => { }, onMouseMove = () => { }, onFeatureClick = () => { }, displayModel, } = props;
+    const [region] = regions;
+    const ref = useRef(null);
+    function getFeatureUnderMouse(eventClientX, eventClientY) {
+        if (!ref.current) {
+            return;
+        }
+        const rect = ref.current.getBoundingClientRect();
+        const offsetX = eventClientX - rect.left;
+        const offsetY = eventClientY - rect.top;
+        const source = sources[Math.floor((offsetY / height) * sources.length)];
+        if (!source) {
+            return;
+        }
+        const px = region.reversed ? width - offsetX : offsetX;
+        const mouseoverBp = region.start + bpPerPx * px;
+        let featureUnderMouse;
+        if (displayModel.isMultiRow) {
+            for (const feature of features.values()) {
+                if (feature.get('source') !== source.name) {
+                    continue;
+                }
+                if (mouseoverBp <= feature.get('end') + bpPerPx &&
+                    mouseoverBp >= feature.get('start')) {
+                    featureUnderMouse = feature;
+                    break;
+                }
+            }
+        }
+        else {
+            const featuresUnderMouse = [];
+            for (const feature of features.values()) {
+                if (mouseoverBp <= feature.get('end') + bpPerPx &&
+                    mouseoverBp >= feature.get('start')) {
+                    featuresUnderMouse.push(feature);
+                }
+            }
+            if (featuresUnderMouse.length) {
+                const pos = Math.floor(mouseoverBp);
+                featureUnderMouse = new SimpleFeature({
+                    uniqueId: 'mouseoverfeat',
+                    sources: Object.fromEntries(featuresUnderMouse
+                        .map(f => f.toJSON())
+                        .map(f => {
+                        const { refName, start, end, source, ...rest } = f;
+                        return [source, rest];
+                    })),
+                    ...region,
+                    start: pos,
+                    end: pos + 1,
+                });
+            }
+        }
+        return featureUnderMouse;
+    }
+    return (React.createElement("div", { ref: ref, onMouseMove: event => {
+            const featureUnderMouse = getFeatureUnderMouse(event.clientX, event.clientY);
+            onMouseMove(event, featureUnderMouse);
+        }, onClick: event => {
+            const featureUnderMouse = getFeatureUnderMouse(event.clientX, event.clientY);
+            onFeatureClick(event, featureUnderMouse);
+        }, onMouseLeave: event => onMouseLeave(event), style: {
+            overflow: 'visible',
+            position: 'relative',
+            height,
+        } },
+        React.createElement(PrerenderedCanvas, { ...props })));
+}
+export default observer(WiggleRendering);
+//# sourceMappingURL=MultiWiggleRendering.js.map

package/esm/MultiWiggleRendering.js.map

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package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js

@@ -0,0 +1,28 @@
+import { drawXY } from '../drawxy';
+import { groupBy, YSCALEBAR_LABEL_OFFSET } from '../util';
+import WiggleBaseRenderer from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    // @ts-ignore
+    async draw(ctx, props) {
+        const { sources, features } = props;
+        const groups = groupBy([...features.values()], f => f.get('source'));
+        const Color = await import('color').then(f => f.default);
+        let feats = [];
+        sources.forEach(source => {
+            const features = groups[source.name];
+            if (!features) {
+                return;
+            }
+            const { reducedFeatures } = drawXY(ctx, {
+                ...props,
+                features,
+                offset: YSCALEBAR_LABEL_OFFSET,
+                colorCallback: () => source.color || 'blue',
+                Color,
+            });
+            feats = feats.concat(reducedFeatures);
+        });
+        return { reducedFeatures: feats };
+    }
+}
+//# sourceMappingURL=MultiXYPlotRenderer.js.map

package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map

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package/esm/MultiXYPlotRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;