@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/dist/LinearWiggleDisplay/models/model.js

@@ -98,11 +98,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.YSCALEBAR_LABEL_OFFSET = void 0;
 var react_1 = __importStar(require("react"));
 var configuration_1 = require("@jbrowse/core/configuration");
 var util_1 = require("@jbrowse/core/util");
-var tracks_1 = require("@jbrowse/core/util/tracks");
 var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
 var mobx_1 = require("mobx");
 var mobx_state_tree_1 = require("mobx-state-tree");
@@ -112,8 +110,6 @@ var Tooltip_1 = __importDefault(require("../components/Tooltip"));
 var WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
 var SetMinMaxDlg = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('../components/SetMinMaxDialog')); }); });
 var SetColorDlg = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('../components/SetColorDialog')); }); });
-// fudge factor for making all labels on the YScalebar visible
-exports.YSCALEBAR_LABEL_OFFSET = 5;
 // using a map because it preserves order
 var rendererTypes = new Map([
     ['xyplot', 'XYPlotRenderer'],
@@ -128,6 +124,7 @@ var stateModelFactory = function (pluginManager, configSchema) {
         selectedRendering: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, ''),
         resolution: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, 1),
         fill: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
+        minSize: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
         color: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
         posColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
         negColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
@@ -148,13 +145,14 @@ var stateModelFactory = function (pluginManager, configSchema) {
         statsFetchInProgress: undefined,
     }); })
         .actions(function (self) { return ({
-        updateStats: function (_a) {
-            var scoreMin = _a.scoreMin, scoreMax = _a.scoreMax;
-            if (self.stats.scoreMin !== scoreMin ||
-                self.stats.scoreMax !== scoreMax) {
+        updateStats: function (stats) {
+            var scoreMin = stats.scoreMin, scoreMax = stats.scoreMax;
+            var EPSILON = 0.000001;
+            if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
+                Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
                 self.stats = { scoreMin: scoreMin, scoreMax: scoreMax };
+                self.statsReady = true;
             }
-            self.statsReady = true;
         },
         setColor: function (color) {
             self.color = color;
@@ -185,7 +183,18 @@ var stateModelFactory = function (pluginManager, configSchema) {
             self.resolution = res;
         },
         setFill: function (fill) {
-            self.fill = fill;
+            if (fill === 0) {
+                self.fill = true;
+                self.minSize = 0;
+            }
+            else if (fill === 1) {
+                self.fill = false;
+                self.minSize = 1;
+            }
+            else if (fill === 2) {
+                self.fill = false;
+                self.minSize = 2;
+            }
         },
         toggleLogScale: function () {
             if (self.scale !== 'log') {
@@ -227,11 +236,14 @@ var stateModelFactory = function (pluginManager, configSchema) {
         get adapterTypeName() {
             return self.adapterConfig.type;
         },
+        get rendererTypeNameSimple() {
+            return self.rendererTypeNameState || (0, configuration_1.getConf)(self, 'defaultRendering');
+        },
         get rendererTypeName() {
-            var viewName = self.rendererTypeNameState || (0, configuration_1.getConf)(self, 'defaultRendering');
-            var rendererType = rendererTypes.get(viewName);
+            var name = this.rendererTypeNameSimple;
+            var rendererType = rendererTypes.get(name);
             if (!rendererType) {
-                throw new Error("unknown alignments view name ".concat(viewName));
+                throw new Error("unknown renderer ".concat(name));
             }
             return rendererType;
         },
@@ -243,19 +255,21 @@ var stateModelFactory = function (pluginManager, configSchema) {
             return self.scale || (0, configuration_1.getConf)(self, 'scaleType');
         },
         get maxScore() {
-            var max = self.constraints.max;
-            return max !== null && max !== void 0 ? max : (0, configuration_1.getConf)(self, 'maxScore');
+            var _a;
+            return (_a = self.constraints.max) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'maxScore');
         },
         get minScore() {
-            var min = self.constraints.min;
-            return min !== null && min !== void 0 ? min : (0, configuration_1.getConf)(self, 'minScore');
+            var _a;
+            return (_a = self.constraints.min) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'minScore');
         },
     }); })
         .views(function (self) { return ({
         get rendererConfig() {
             var configBlob = (0, configuration_1.getConf)(self, ['renderers', self.rendererTypeName]) || {};
-            var color = self.color, posColor = self.posColor, negColor = self.negColor, summaryScoreMode = self.summaryScoreMode, scaleType = self.scaleType, displayCrossHatches = self.displayCrossHatches, fill = self.fill;
-            return self.rendererType.configSchema.create(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({}, configBlob), (scaleType ? { scaleType: scaleType } : {})), (fill ? { filled: fill } : {})), (displayCrossHatches ? { displayCrossHatches: displayCrossHatches } : {})), (summaryScoreMode ? { summaryScoreMode: summaryScoreMode } : {})), (color ? { color: color } : {})), (negColor ? { negColor: negColor } : {})), (posColor ? { posColor: posColor } : {})), (0, mobx_state_tree_1.getEnv)(self));
+            var color = self.color, displayCrossHatches = self.displayCrossHatches, fill = self.fill, minSize = self.minSize, negColor = self.negColor, posColor = self.posColor, summaryScoreMode = self.summaryScoreMode, scaleType = self.scaleType;
+            return self.rendererType.configSchema.create(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({}, configBlob), (scaleType ? { scaleType: scaleType } : {})), (fill !== undefined ? { filled: fill } : {})), (displayCrossHatches !== undefined
+                ? { displayCrossHatches: displayCrossHatches }
+                : {})), (summaryScoreMode !== undefined ? { summaryScoreMode: summaryScoreMode } : {})), (color !== undefined ? { color: color } : {})), (negColor !== undefined ? { negColor: negColor } : {})), (posColor !== undefined ? { posColor: posColor } : {})), (minSize !== undefined ? { minSize: minSize } : {})), (0, mobx_state_tree_1.getEnv)(self));
         },
     }); })
         .views(function (self) {
@@ -316,17 +330,22 @@ var stateModelFactory = function (pluginManager, configSchema) {
         get ticks() {
             var scaleType = self.scaleType, domain = self.domain, height = self.height;
             var minimalTicks = (0, configuration_1.getConf)(self, 'minimalTicks');
-            var range = [height - exports.YSCALEBAR_LABEL_OFFSET, exports.YSCALEBAR_LABEL_OFFSET];
+            var inverted = (0, configuration_1.getConf)(self, 'inverted');
+            var range = [height - util_2.YSCALEBAR_LABEL_OFFSET, util_2.YSCALEBAR_LABEL_OFFSET];
             var scale = (0, util_2.getScale)({
                 scaleType: scaleType,
                 domain: domain,
                 range: range,
-                inverted: (0, configuration_1.getConf)(self, 'inverted'),
+                inverted: inverted,
             });
             var ticks = (0, react_d3_axis_mod_1.axisPropsFromTickScale)(scale, 4);
             return height < 100 || minimalTicks
                 ? __assign(__assign({}, ticks), { values: domain }) : ticks;
         },
+        get adapterCapabilities() {
+            return pluginManager.getAdapterType(self.adapterTypeName)
+                .adapterCapabilities;
+        },
     }); })
         .views(function (self) {
         var superRenderProps = self.renderProps;
@@ -336,15 +355,22 @@ var stateModelFactory = function (pluginManager, configSchema) {
                 var filters = self.filters, ticks = self.ticks, height = self.height, resolution = self.resolution, scaleOpts = self.scaleOpts;
                 return __assign(__assign({}, superProps), { notReady: superProps.notReady || !self.statsReady, rpcDriverName: self.rpcDriverName, displayModel: self, config: self.rendererConfig, displayCrossHatches: self.displayCrossHatchesSetting, scaleOpts: scaleOpts, resolution: resolution, height: height, ticks: ticks, filters: filters });
             },
-            get adapterCapabilities() {
-                return pluginManager.getAdapterType(self.adapterTypeName)
-                    .adapterCapabilities;
-            },
             get hasResolution() {
-                return this.adapterCapabilities.includes('hasResolution');
+                return self.adapterCapabilities.includes('hasResolution');
             },
             get hasGlobalStats() {
-                return this.adapterCapabilities.includes('hasGlobalStats');
+                return self.adapterCapabilities.includes('hasGlobalStats');
+            },
+            get fillSetting() {
+                if (self.filled) {
+                    return 0;
+                }
+                else if (!self.filled && self.minSize === 1) {
+                    return 1;
+                }
+                else {
+                    return 2;
+                }
             },
         };
     })
@@ -353,7 +379,7 @@ var stateModelFactory = function (pluginManager, configSchema) {
         var hasRenderings = (0, configuration_1.getConf)(self, 'defaultRendering');
         return {
             trackMenuItems: function () {
-                return __spreadArray(__spreadArray(__spreadArray(__spreadArray(__spreadArray(__spreadArray([], __read(superTrackMenuItems()), false), __read((self.hasResolution
+                return __spreadArray(__spreadArray(__spreadArray(__spreadArray(__spreadArray(__spreadArray(__spreadArray([], __read(superTrackMenuItems()), false), __read((self.hasResolution
                     ? [
                         {
                             label: 'Resolution',
@@ -372,6 +398,8 @@ var stateModelFactory = function (pluginManager, configSchema) {
                             label: 'Summary score mode',
                             subMenu: ['min', 'max', 'avg', 'whiskers'].map(function (elt) { return ({
                                 label: elt,
+                                type: 'radio',
+                                checked: self.summaryScoreModeSetting === elt,
                                 onClick: function () { return self.setSummaryScoreMode(elt); },
                             }); }),
                         },
@@ -379,29 +407,37 @@ var stateModelFactory = function (pluginManager, configSchema) {
                     : [])), false), __read((self.canHaveFill
                     ? [
                         {
-                            label: self.filled
-                                ? 'Turn off histogram fill'
-                                : 'Turn on histogram fill',
-                            onClick: function () { return self.setFill(!self.filled); },
+                            label: 'Fill mode',
+                            subMenu: ['filled', 'no fill', 'no fill w/ emphasis'].map(function (elt, idx) { return ({
+                                label: elt,
+                                type: 'radio',
+                                checked: self.fillSetting === idx,
+                                onClick: function () { return self.setFill(idx); },
+                            }); }),
                         },
                     ]
                     : [])), false), [
                     {
                         label: self.scaleType === 'log' ? 'Set linear scale' : 'Set log scale',
                         onClick: function () { return self.toggleLogScale(); },
-                    },
-                    {
-                        type: 'checkbox',
-                        label: 'Draw cross hatches',
-                        checked: self.displayCrossHatchesSetting,
-                        onClick: function () { return self.toggleCrossHatches(); },
                     }
-                ], false), __read((hasRenderings
+                ], false), __read((self.needsScalebar
+                    ? [
+                        {
+                            type: 'checkbox',
+                            label: 'Draw cross hatches',
+                            checked: self.displayCrossHatchesSetting,
+                            onClick: function () { return self.toggleCrossHatches(); },
+                        },
+                    ]
+                    : [])), false), __read((hasRenderings
                     ? [
                         {
                             label: 'Renderer type',
                             subMenu: ['xyplot', 'density', 'line'].map(function (key) { return ({
                                 label: key,
+                                type: 'radio',
+                                checked: self.rendererTypeNameSimple === key,
                                 onClick: function () { return self.setRendererType(key); },
                             }); }),
                         },
@@ -422,6 +458,8 @@ var stateModelFactory = function (pluginManager, configSchema) {
                             var _b = __read(_a, 2), val = _b[0], label = _b[1];
                             return ({
                                 label: label,
+                                type: 'radio',
+                                checked: self.autoscaleType === val,
                                 onClick: function () { return self.setAutoscale(val); },
                             });
                         }),
@@ -450,55 +488,6 @@ var stateModelFactory = function (pluginManager, configSchema) {
     })
         .actions(function (self) {
         var superReload = self.reload, superRenderSvg = self.renderSvg;
-        function getStats(opts) {
-            return __awaiter(this, void 0, void 0, function () {
-                var rpcManager, nd, adapterConfig, autoscaleType, sessionId, params, results, scoreMin, scoreMean, scoreStdDev, _a, dynamicBlocks, bpPerPx, results, scoreMin, scoreMean, scoreStdDev;
-                return __generator(this, function (_b) {
-                    switch (_b.label) {
-                        case 0:
-                            rpcManager = (0, util_1.getSession)(self).rpcManager;
-                            nd = (0, configuration_1.getConf)(self, 'numStdDev') || 3;
-                            adapterConfig = self.adapterConfig, autoscaleType = self.autoscaleType;
-                            sessionId = (0, tracks_1.getRpcSessionId)(self);
-                            params = __assign({ sessionId: sessionId, adapterConfig: adapterConfig, statusCallback: function (message) {
-                                    if ((0, mobx_state_tree_1.isAlive)(self)) {
-                                        self.setMessage(message);
-                                    }
-                                } }, opts);
-                            if (!(autoscaleType === 'global' || autoscaleType === 'globalsd')) return [3 /*break*/, 2];
-                            return [4 /*yield*/, rpcManager.call(sessionId, 'WiggleGetGlobalStats', params)];
-                        case 1:
-                            results = (_b.sent());
-                            scoreMin = results.scoreMin, scoreMean = results.scoreMean, scoreStdDev = results.scoreStdDev;
-                            // globalsd uses heuristic to avoid unnecessary scoreMin<0
-                            // if the scoreMin is never less than 0
-                            // helps with most coverage bigwigs just being >0
-                            return [2 /*return*/, autoscaleType === 'globalsd'
-                                    ? __assign(__assign({}, results), { scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev, scoreMax: scoreMean + nd * scoreStdDev }) : results];
-                        case 2:
-                            if (!(autoscaleType === 'local' || autoscaleType === 'localsd')) return [3 /*break*/, 4];
-                            _a = (0, util_1.getContainingView)(self), dynamicBlocks = _a.dynamicBlocks, bpPerPx = _a.bpPerPx;
-                            return [4 /*yield*/, rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', __assign(__assign({}, params), { regions: dynamicBlocks.contentBlocks.map(function (region) {
-                                        var start = region.start, end = region.end;
-                                        return __assign(__assign({}, JSON.parse(JSON.stringify(region))), { start: Math.floor(start), end: Math.ceil(end) });
-                                    }), bpPerPx: bpPerPx }))];
-                        case 3:
-                            results = (_b.sent());
-                            scoreMin = results.scoreMin, scoreMean = results.scoreMean, scoreStdDev = results.scoreStdDev;
-                            // localsd uses heuristic to avoid unnecessary scoreMin<0 if the
-                            // scoreMin is never less than 0 helps with most coverage bigwigs
-                            // just being >0
-                            return [2 /*return*/, autoscaleType === 'localsd'
-                                    ? __assign(__assign({}, results), { scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev, scoreMax: scoreMean + nd * scoreStdDev }) : results];
-                        case 4:
-                            if (autoscaleType === 'zscale') {
-                                return [2 /*return*/, rpcManager.call(sessionId, 'WiggleGetGlobalStats', params)];
-                            }
-                            throw new Error("invalid autoscaleType '".concat(autoscaleType, "'"));
-                    }
-                });
-            });
-        }
         return {
             // re-runs stats and refresh whole display on reload
             reload: function () {
@@ -513,7 +502,7 @@ var stateModelFactory = function (pluginManager, configSchema) {
                                 _a.label = 1;
                             case 1:
                                 _a.trys.push([1, 3, , 4]);
-                                return [4 /*yield*/, getStats(__assign({ signal: aborter.signal }, self.renderProps()))];
+                                return [4 /*yield*/, (0, util_2.getStats)(self, __assign({ signal: aborter.signal }, self.renderProps()))];
                             case 2:
                                 stats = _a.sent();
                                 if ((0, mobx_state_tree_1.isAlive)(self)) {
@@ -531,43 +520,7 @@ var stateModelFactory = function (pluginManager, configSchema) {
                 });
             },
             afterAttach: function () {
-                var _this = this;
-                (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(function () { return __awaiter(_this, void 0, void 0, function () {
-                    var view, aborter, wiggleStats, e_2;
-                    return __generator(this, function (_a) {
-                        switch (_a.label) {
-                            case 0:
-                                _a.trys.push([0, 2, , 3]);
-                                view = (0, util_1.getContainingView)(self);
-                                if (!view.initialized) {
-                                    return [2 /*return*/];
-                                }
-                                if (!self.estimatedStatsReady) {
-                                    return [2 /*return*/];
-                                }
-                                if (self.regionTooLarge) {
-                                    return [2 /*return*/];
-                                }
-                                aborter = new AbortController();
-                                self.setLoading(aborter);
-                                return [4 /*yield*/, getStats(__assign({ signal: aborter.signal }, self.renderProps()))];
-                            case 1:
-                                wiggleStats = _a.sent();
-                                if ((0, mobx_state_tree_1.isAlive)(self)) {
-                                    self.updateStats(wiggleStats);
-                                }
-                                return [3 /*break*/, 3];
-                            case 2:
-                                e_2 = _a.sent();
-                                if (!(0, util_1.isAbortException)(e_2) && (0, mobx_state_tree_1.isAlive)(self)) {
-                                    console.error(e_2);
-                                    self.setError(e_2);
-                                }
-                                return [3 /*break*/, 3];
-                            case 3: return [2 /*return*/];
-                        }
-                    });
-                }); }, { delay: 1000 }));
+                (0, util_2.statsAutorun)(self);
             },
             renderSvg: function (opts) {
                 return __awaiter(this, void 0, void 0, function () {

package/dist/LinearWiggleDisplay/models/model.js.map

@@ -1 +1 @@
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package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/dist/MultiDensityRenderer/MultiDensityRenderer.js

@@ -0,0 +1,135 @@
+"use strict";
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var util_1 = require("../util");
+var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+var drawxy_1 = require("../drawxy");
+var MultiXYPlotRenderer = /** @class */ (function (_super) {
+    __extends(MultiXYPlotRenderer, _super);
+    function MultiXYPlotRenderer() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    // @ts-ignore
+    MultiXYPlotRenderer.prototype.draw = function (ctx, props) {
+        return __awaiter(this, void 0, void 0, function () {
+            var bpPerPx, sources, regions, features, _a, region, groups, height, width, feats;
+            return __generator(this, function (_b) {
+                bpPerPx = props.bpPerPx, sources = props.sources, regions = props.regions, features = props.features;
+                _a = __read(regions, 1), region = _a[0];
+                groups = (0, util_1.groupBy)(__spreadArray([], __read(features.values()), false), function (f) { return f.get('source'); });
+                height = props.height / Object.keys(groups).length;
+                width = (region.end - region.start) / bpPerPx;
+                feats = [];
+                ctx.save();
+                sources.forEach(function (source) {
+                    var features = groups[source.name];
+                    if (!features) {
+                        return;
+                    }
+                    var reducedFeatures = (0, drawxy_1.drawDensity)(ctx, __assign(__assign({}, props), { features: features, height: height })).reducedFeatures;
+                    ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+                    ctx.beginPath();
+                    ctx.moveTo(0, height);
+                    ctx.lineTo(width, height);
+                    ctx.stroke();
+                    ctx.translate(0, height);
+                    feats = feats.concat(reducedFeatures);
+                });
+                ctx.restore();
+                return [2 /*return*/, { reducedFeatures: feats }];
+            });
+        });
+    };
+    return MultiXYPlotRenderer;
+}(WiggleBaseRenderer_1.default));
+exports.default = MultiXYPlotRenderer;
+//# sourceMappingURL=MultiDensityRenderer.js.map

package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map

@@ -0,0 +1 @@
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package/dist/MultiDensityRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiDensityRenderer/configSchema.js

@@ -0,0 +1,10 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var configSchema_1 = __importDefault(require("../configSchema"));
+var configSchema = (0, configuration_1.ConfigurationSchema)('MultiDensityRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiDensityRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiDensityRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,6DAAiE;AACjE,iEAA0C;AAE1C,IAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,sBAAsB,EACtB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/MultiDensityRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiDensityRenderer/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var configSchema_1 = __importDefault(require("./configSchema"));
+var MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+var MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
+exports.default = (function (pluginManager) {
+    pluginManager.addRendererType(function () {
+        return new MultiDensityRenderer_1.default({
+            name: 'MultiDensityRenderer',
+            ReactComponent: MultiWiggleRendering_1.default,
+            configSchema: configSchema_1.default,
+            pluginManager: pluginManager,
+        });
+    });
+});
+//# sourceMappingURL=index.js.map

package/dist/MultiDensityRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiDensityRenderer/index.ts"],"names":[],"mappings":";;;;;AACA,gEAAyC;AACzC,iFAAoD;AACpD,gFAAyD;AAEzD,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,8BAAoB,CAAC;YACvB,IAAI,EAAE,sBAAsB;YAC5B,cAAc,gCAAA;YACd,YAAY,wBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC,EAAA"}

package/dist/MultiLineRenderer/MultiLineRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiLineRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}