@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/dist/BigWigAdapter/BigWigAdapter.d.ts

@@ -1,17 +1,18 @@
+import { BigWig } from '@gmod/bbi';
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import { Feature } from '@jbrowse/core/util';
 interface WiggleOptions extends BaseOptions {
     resolution?: number;
 }
 export default class BigWigAdapter extends BaseFeatureDataAdapter {
-    private bigwig;
+    private setupP?;
     static capabilities: string[];
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private setup;
+    private setupPre;
+    setup(opts?: BaseOptions): Promise<{
+        bigwig: BigWig;
+        header: any;
+    }>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;
     refIdToName(refId: number): Promise<any>;
     getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;

package/dist/BigWigAdapter/BigWigAdapter.js

@@ -61,37 +61,47 @@ var __generator = (this && this.__generator) || function (thisArg, body) {
         if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
     }
 };
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 var bbi_1 = require("@gmod/bbi");
 var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
 var io_1 = require("@jbrowse/core/util/io");
 var util_1 = require("@jbrowse/core/util");
 var rxjs_1 = require("@jbrowse/core/util/rxjs");
-var simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeature"));
-var operators_1 = require("rxjs/operators");
-var configuration_1 = require("@jbrowse/core/configuration");
 var stats_1 = require("@jbrowse/core/util/stats");
 var BigWigAdapter = /** @class */ (function (_super) {
     __extends(BigWigAdapter, _super);
-    function BigWigAdapter(config, getSubAdapter, pluginManager) {
-        var _this = _super.call(this, config, getSubAdapter, pluginManager) || this;
-        _this.bigwig = new bbi_1.BigWig({
-            filehandle: (0, io_1.openLocation)((0, configuration_1.readConfObject)(config, 'bigWigLocation'), _this.pluginManager),
-        });
-        return _this;
+    function BigWigAdapter() {
+        return _super !== null && _super.apply(this, arguments) || this;
     }
+    BigWigAdapter.prototype.setupPre = function (opts) {
+        return __awaiter(this, void 0, void 0, function () {
+            var _a, statusCallback, bigwig, header;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        _a = (opts || {}).statusCallback, statusCallback = _a === void 0 ? function () { } : _a;
+                        bigwig = new bbi_1.BigWig({
+                            filehandle: (0, io_1.openLocation)(this.getConf('bigWigLocation'), this.pluginManager),
+                        });
+                        return [4 /*yield*/, (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, function () { return bigwig.getHeader(opts); })];
+                    case 1:
+                        header = _b.sent();
+                        return [2 /*return*/, { bigwig: bigwig, header: header }];
+                }
+            });
+        });
+    };
     BigWigAdapter.prototype.setup = function (opts) {
         return __awaiter(this, void 0, void 0, function () {
-            var _a, statusCallback;
             var _this = this;
-            return __generator(this, function (_b) {
-                _a = (opts || {}).statusCallback, statusCallback = _a === void 0 ? function () { } : _a;
-                return [2 /*return*/, (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, function () {
-                        return _this.bigwig.getHeader(opts);
-                    })];
+            return __generator(this, function (_a) {
+                if (!this.setupP) {
+                    this.setupP = this.setupPre(opts).catch(function (e) {
+                        _this.setupP = undefined;
+                        throw e;
+                    });
+                }
+                return [2 /*return*/, this.setupP];
             });
         });
     };
@@ -102,7 +112,7 @@ var BigWigAdapter = /** @class */ (function (_super) {
                 switch (_a.label) {
                     case 0: return [4 /*yield*/, this.setup(opts)];
                     case 1:
-                        refsByName = (_a.sent()).refsByName;
+                        refsByName = (_a.sent()).header.refsByName;
                         return [2 /*return*/, Object.keys(refsByName)];
                 }
             });
@@ -116,7 +126,7 @@ var BigWigAdapter = /** @class */ (function (_super) {
                 switch (_b.label) {
                     case 0: return [4 /*yield*/, this.setup()];
                     case 1:
-                        refsByNumber = (_b.sent()).refsByNumber;
+                        refsByNumber = (_b.sent()).header.refsByNumber;
                         return [2 /*return*/, (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name];
                 }
             });
@@ -129,7 +139,7 @@ var BigWigAdapter = /** @class */ (function (_super) {
                 switch (_a.label) {
                     case 0: return [4 /*yield*/, this.setup(opts)];
                     case 1:
-                        totalSummary = (_a.sent()).totalSummary;
+                        totalSummary = (_a.sent()).header.totalSummary;
                         return [2 /*return*/, (0, stats_1.rectifyStats)(totalSummary)];
                 }
             });
@@ -141,20 +151,40 @@ var BigWigAdapter = /** @class */ (function (_super) {
         var refName = region.refName, start = region.start, end = region.end;
         var _a = opts.bpPerPx, bpPerPx = _a === void 0 ? 0 : _a, signal = opts.signal, _b = opts.resolution, resolution = _b === void 0 ? 1 : _b, _c = opts.statusCallback, statusCallback = _c === void 0 ? function () { } : _c;
         return (0, rxjs_1.ObservableCreate)(function (observer) { return __awaiter(_this, void 0, void 0, function () {
-            var ob;
+            var source, bigwig, feats, _loop_1, i;
             return __generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         statusCallback('Downloading bigwig data');
-                        return [4 /*yield*/, this.bigwig.getFeatureStream(refName, start, end, __assign(__assign({}, opts), { basesPerSpan: bpPerPx / resolution }))];
+                        source = this.getConf('source');
+                        return [4 /*yield*/, this.setup(opts)];
                     case 1:
-                        ob = _a.sent();
-                        ob.pipe((0, operators_1.mergeAll)(), (0, operators_1.map)(function (record) {
-                            return new simpleFeature_1.default({
-                                id: "".concat(refName, ":").concat(record.start, "-").concat(record.end),
-                                data: __assign(__assign({}, record), { refName: refName }),
+                        bigwig = (_a.sent()).bigwig;
+                        return [4 /*yield*/, bigwig.getFeatures(refName, start, end, __assign(__assign({}, opts), { basesPerSpan: bpPerPx / resolution }))];
+                    case 2:
+                        feats = _a.sent();
+                        _loop_1 = function (i) {
+                            var data = feats[i];
+                            if (source) {
+                                // @ts-ignore
+                                data.source = source;
+                            }
+                            var uniqueId = "".concat(source, ":").concat(region.refName, ":").concat(data.start, "-").concat(data.end);
+                            // @ts-ignore
+                            data.refName = refName;
+                            data.uniqueId = uniqueId;
+                            observer.next({
+                                // @ts-ignore
+                                get: function (str) { return data[str]; },
+                                id: function () { return uniqueId; },
+                                // @ts-ignore
+                                toJSON: function () { return data; },
                             });
-                        })).subscribe(observer);
+                        };
+                        for (i = 0; i < feats.length; i++) {
+                            _loop_1(i);
+                        }
+                        observer.complete();
                         return [2 /*return*/];
                 }
             });

package/dist/BigWigAdapter/BigWigAdapter.js.map

@@ -1 +1 @@
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package/dist/BigWigAdapter/configSchema.js

@@ -9,5 +9,10 @@ exports.default = (0, configuration_1.ConfigurationSchema)('BigWigAdapter', {
             locationType: 'UriLocation',
         },
     },
+    source: {
+        type: 'string',
+        defaultValue: '',
+        description: 'Used for multiwiggle',
+    },
 }, { explicitlyTyped: true });
 //# sourceMappingURL=configSchema.js.map

package/dist/BigWigAdapter/configSchema.js.map

@@ -1 +1 @@
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+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/dist/BigWigAdapter/index.d.ts

@@ -1 +1,3 @@
-export { default as configSchema } from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/BigWigAdapter/index.js

@@ -1,9 +1,45 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = void 0;
-var configSchema_1 = require("./configSchema");
-Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
+var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+var configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (function (pluginManager) {
+    pluginManager.addAdapterType(function () {
+        return new AdapterType_1.default({
+            name: 'BigWigAdapter',
+            configSchema: configSchema_1.default,
+            adapterCapabilities: [
+                'hasResolution',
+                'hasLocalStats',
+                'hasGlobalStats',
+            ],
+            getAdapterClass: function () { return Promise.resolve().then(function () { return __importStar(require('./BigWigAdapter')); }).then(function (r) { return r.default; }); },
+        });
+    });
+});
 //# sourceMappingURL=index.js.map

package/dist/BigWigAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gGAAyE;AACzE,gEAAyC;AAEzC,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAC1B;QACE,OAAA,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,eAAe;YACrB,YAAY,wBAAA;YACZ,mBAAmB,EAAE;gBACnB,eAAe;gBACf,eAAe;gBACf,gBAAgB;aACjB;YACD,eAAe,EAAE,cAAM,OAAA,iEAAO,iBAAiB,OAAE,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC,EAA9C,CAA8C;SACtE,CAAC;IATF,CASE,CACL,CAAA;AACH,CAAC,EAAA"}

package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+declare const ConfirmDialog: ({ tracks, onClose, }: {
+    tracks: AnyConfigurationModel[];
+    onClose: (arg: boolean, arg1?: {
+        name: string;
+    }) => void;
+}) => JSX.Element;
+export default ConfirmDialog;

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js

@@ -0,0 +1,68 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var material_1 = require("@mui/material");
+var configuration_1 = require("@jbrowse/core/configuration");
+var ConfirmDialog = function (_a) {
+    var tracks = _a.tracks, onClose = _a.onClose;
+    var _b = __read((0, react_1.useState)('MultiWiggle ' + Date.now()), 2), val = _b[0], setVal = _b[1];
+    var allQuant = tracks.every(function (t) { return t.type === 'QuantitativeTrack'; });
+    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: function () { return onClose(false); } },
+        react_1.default.createElement(material_1.DialogTitle, null, "Confirm multi-wiggle track create"),
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(material_1.Typography, null,
+                !allQuant
+                    ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
+                    : null,
+                "Listing:"),
+            react_1.default.createElement("ul", null, tracks.map(function (track) { return (react_1.default.createElement("li", { key: track.trackId },
+                (0, configuration_1.readConfObject)(track, 'name'),
+                " - ",
+                track.type)); })),
+            react_1.default.createElement(material_1.TextField, { value: val, onChange: function (event) { return setVal(event.target.value); }, helperText: "Track name" }),
+            react_1.default.createElement(material_1.Typography, null, "Confirm creation of track?")),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { onClick: function () { return onClose(false); }, color: "primary" }, "Cancel"),
+            react_1.default.createElement(material_1.Button, { onClick: function () { return onClose(true, { name: val }); }, color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
+};
+exports.default = ConfirmDialog;
+//# sourceMappingURL=ConfirmDialog.js.map

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map

@@ -0,0 +1 @@
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package/dist/CreateMultiWiggleExtension/index.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function (pm: PluginManager): void;

package/dist/CreateMultiWiggleExtension/index.js

@@ -0,0 +1,111 @@
+"use strict";
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = require("react");
+var configuration_1 = require("@jbrowse/core/configuration");
+var util_1 = require("@jbrowse/core/util");
+var ConfirmDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./ConfirmDialog')); }); });
+function default_1(pm) {
+    pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', function () {
+        return [
+            {
+                label: 'Create multi-wiggle track',
+                onClick: function (model) {
+                    var tracks = model.selection;
+                    var trackIds = tracks.map(function (c) { return (0, configuration_1.readConfObject)(c, 'name'); });
+                    function makeTrack(arg) {
+                        var subadapters = tracks
+                            .map(function (c) { return (0, configuration_1.readConfObject)(c, 'adapter'); })
+                            .map(function (c, idx) { return (__assign(__assign({}, c), { source: trackIds[idx] })); });
+                        var assemblyNames = __spreadArray([], __read(new Set(tracks.map(function (c) { return (0, configuration_1.readConfObject)(c, 'assemblyNames'); }).flat())), false);
+                        var now = +Date.now();
+                        var trackId = "multitrack-".concat(now, "-sessionTrack");
+                        (0, util_1.getSession)(model).addTrackConf({
+                            type: 'MultiQuantitativeTrack',
+                            trackId: trackId,
+                            name: arg.name,
+                            assemblyNames: assemblyNames,
+                            adapter: {
+                                type: 'MultiWiggleAdapter',
+                                subadapters: subadapters,
+                            },
+                        });
+                        model.view.showTrack(trackId);
+                    }
+                    (0, util_1.getSession)(model).queueDialog(function (handleClose) { return [
+                        ConfirmDialog,
+                        {
+                            tracks: tracks,
+                            onClose: function (arg, arg1) {
+                                if (arg) {
+                                    makeTrack(arg1);
+                                }
+                                handleClose();
+                            },
+                        },
+                    ]; });
+                },
+            },
+        ];
+    });
+}
+exports.default = default_1;
+//# sourceMappingURL=index.js.map

package/dist/CreateMultiWiggleExtension/index.js.map

@@ -0,0 +1 @@
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package/dist/DensityRenderer/DensityRenderer.d.ts

@@ -0,0 +1,6 @@
+import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
+export default class DensityRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
+        reducedFeatures: import("@jbrowse/core/util").Feature[];
+    }>;
+}

package/dist/DensityRenderer/DensityRenderer.js

@@ -0,0 +1,74 @@
+"use strict";
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var drawxy_1 = require("../drawxy");
+var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+var DensityRenderer = /** @class */ (function (_super) {
+    __extends(DensityRenderer, _super);
+    function DensityRenderer() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    DensityRenderer.prototype.draw = function (ctx, props) {
+        return __awaiter(this, void 0, void 0, function () {
+            return __generator(this, function (_a) {
+                return [2 /*return*/, (0, drawxy_1.drawDensity)(ctx, props)];
+            });
+        });
+    };
+    return DensityRenderer;
+}(WiggleBaseRenderer_1.default));
+exports.default = DensityRenderer;
+//# sourceMappingURL=DensityRenderer.js.map

package/dist/DensityRenderer/DensityRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"DensityRenderer.js","sourceRoot":"","sources":["../../src/DensityRenderer/DensityRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,oCAAuC;AAEvC,6EAE8B;AAE9B;IAA6C,mCAAkB;IAA/D;;IAOA,CAAC;IANO,8BAAI,GAAV,UACE,GAA6B,EAC7B,KAAyC;;;gBAEzC,sBAAO,IAAA,oBAAW,EAAC,GAAG,EAAE,KAAK,CAAC,EAAA;;;KAC/B;IACH,sBAAC;AAAD,CAAC,AAPD,CAA6C,4BAAkB,GAO9D"}

package/dist/DensityRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/DensityRenderer/configSchema.js

@@ -0,0 +1,10 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var configSchema_1 = __importDefault(require("../configSchema"));
+var configSchema = (0, configuration_1.ConfigurationSchema)('DensityRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/DensityRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/DensityRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,6DAAiE;AAEjE,iEAA0C;AAE1C,IAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,iBAAiB,EACjB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/DensityRenderer/index.d.ts

@@ -1,6 +1,3 @@
-import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-export { default as ReactComponent } from '../WiggleRendering';
-export default class DensityRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<void>;
-}
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;