@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/dist/MultiLineRenderer/MultiLineRenderer.js

@@ -0,0 +1,124 @@
+"use strict";
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var drawxy_1 = require("../drawxy");
+var util_1 = require("../util");
+var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+var MultiLineRenderer = /** @class */ (function (_super) {
+    __extends(MultiLineRenderer, _super);
+    function MultiLineRenderer() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    // @ts-ignore
+    MultiLineRenderer.prototype.draw = function (ctx, props) {
+        return __awaiter(this, void 0, void 0, function () {
+            var sources, features, groups, feats;
+            return __generator(this, function (_a) {
+                sources = props.sources, features = props.features;
+                groups = (0, util_1.groupBy)(__spreadArray([], __read(features.values()), false), function (f) { return f.get('source'); });
+                feats = [];
+                sources.forEach(function (source) {
+                    var features = groups[source.name];
+                    if (!features) {
+                        return;
+                    }
+                    var reducedFeatures = (0, drawxy_1.drawLine)(ctx, __assign(__assign({}, props), { features: features, colorCallback: function () { return source.color || 'blue'; } })).reducedFeatures;
+                    feats = feats.concat(reducedFeatures);
+                });
+                return [2 /*return*/, { reducedFeatures: feats }];
+            });
+        });
+    };
+    return MultiLineRenderer;
+}(WiggleBaseRenderer_1.default));
+exports.default = MultiLineRenderer;
+//# sourceMappingURL=MultiLineRenderer.js.map

package/dist/MultiLineRenderer/MultiLineRenderer.js.map

@@ -0,0 +1 @@
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package/dist/MultiLineRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiLineRenderer/configSchema.js

@@ -0,0 +1,23 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var mobx_state_tree_1 = require("mobx-state-tree");
+var configSchema_1 = __importDefault(require("../configSchema"));
+var configSchema = (0, configuration_1.ConfigurationSchema)('MultiLineRenderer', {
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'avg',
+    },
+}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiLineRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,6DAAiE;AACjE,mDAAuC;AACvC,iEAA0C;AAE1C,IAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,mBAAmB,EACnB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IAED,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AACD,kBAAe,YAAY,CAAA"}

package/dist/MultiLineRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiLineRenderer/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+var MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
+var configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (function (pluginManager) {
+    pluginManager.addRendererType(function () {
+        return new MultiLineRenderer_1.default({
+            name: 'MultiLineRenderer',
+            ReactComponent: MultiWiggleRendering_1.default,
+            configSchema: configSchema_1.default,
+            pluginManager: pluginManager,
+        });
+    });
+});
+//# sourceMappingURL=index.js.map

package/dist/MultiLineRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/index.ts"],"names":[],"mappings":";;;;;AAEA,iFAAoD;AACpD,0EAAmD;AACnD,gEAAyC;AAEzC,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,2BAAiB,CAAC;YACpB,IAAI,EAAE,mBAAmB;YACzB,cAAc,gCAAA;YACd,YAAY,wBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC,EAAA"}

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -0,0 +1,10 @@
+/// <reference types="react" />
+import { Source } from '../../util';
+export default function SetColorDialog({ model, handleClose, }: {
+    model: {
+        sources: Source[];
+        setLayout: (s: Source[]) => void;
+        clearLayout: () => void;
+    };
+    handleClose: () => void;
+}): JSX.Element;

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js

@@ -0,0 +1,239 @@
+"use strict";
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __rest = (this && this.__rest) || function (s, e) {
+    var t = {};
+    for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p) && e.indexOf(p) < 0)
+        t[p] = s[p];
+    if (s != null && typeof Object.getOwnPropertySymbols === "function")
+        for (var i = 0, p = Object.getOwnPropertySymbols(s); i < p.length; i++) {
+            if (e.indexOf(p[i]) < 0 && Object.prototype.propertyIsEnumerable.call(s, p[i]))
+                t[p[i]] = s[p[i]];
+        }
+    return t;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var material_1 = require("@mui/material");
+var mui_1 = require("tss-react/mui");
+var util_1 = require("@jbrowse/core/util");
+var x_data_grid_1 = require("@mui/x-data-grid");
+var react_draggable_1 = __importDefault(require("react-draggable"));
+var clone_1 = __importDefault(require("clone"));
+// locals
+var ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
+var BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+var util_2 = require("./util");
+// icons
+var Close_1 = __importDefault(require("@mui/icons-material/Close"));
+var KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
+var KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
+var KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
+var KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+    content: {
+        minWidth: 800,
+    },
+}); });
+// draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
+function PaperComponent(props) {
+    return (react_1.default.createElement(react_draggable_1.default, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
+        react_1.default.createElement(material_1.Paper, __assign({}, props))));
+}
+function SetColorDialog(_a) {
+    var model = _a.model, handleClose = _a.handleClose;
+    var classes = useStyles().classes;
+    var sources = model.sources;
+    var _b = __read((0, react_1.useState)((0, clone_1.default)(sources || [])), 2), currLayout = _b[0], setCurrLayout = _b[1];
+    var _c = __read((0, util_1.useLocalStorage)('multiwiggle-showTips', 'true'), 2), showTipsTmp = _c[0], setShowTips = _c[1];
+    var showTips = showTipsTmp === 'true';
+    return (react_1.default.createElement(material_1.Dialog, { PaperComponent: PaperComponent, open: true, onClose: handleClose, maxWidth: "xl", "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
+     },
+        react_1.default.createElement(material_1.DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
+            "Multi-wiggle color/arrangement editor",
+            ' ',
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: handleClose },
+                react_1.default.createElement(Close_1.default, null))),
+        react_1.default.createElement(material_1.DialogContent, { className: classes.content },
+            react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: function () { return setShowTips(showTips ? 'false' : 'true'); } }, showTips ? 'Hide tips' : 'Show tips'),
+            react_1.default.createElement("br", null),
+            showTips ? (react_1.default.createElement(react_1.default.Fragment, null,
+                "Helpful tips",
+                react_1.default.createElement("ul", null,
+                    react_1.default.createElement("li", null, "You can select rows in the table with the checkboxes"),
+                    react_1.default.createElement("li", null, "Multi-select is enabled with shift-click and control-click"),
+                    react_1.default.createElement("li", null, "The \"Move selected items up/down\" can re-arrange subtracks"),
+                    react_1.default.createElement("li", null, "Sorting the data grid itself can also re-arrange subtracks"),
+                    react_1.default.createElement("li", null, "Changes are applied when you hit Submit"),
+                    react_1.default.createElement("li", null, "You can click and drag the dialog box to move it on the screen"),
+                    react_1.default.createElement("li", null, "Columns in the table can be hidden using a vertical '...' menu on the right side of each column")))) : null,
+            react_1.default.createElement(SourcesGrid, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: function () {
+                    model.clearLayout();
+                    setCurrLayout(model.sources);
+                } }, "Clear custom settings"),
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: function () {
+                    handleClose();
+                    setCurrLayout(__spreadArray([], __read(model.sources), false));
+                } }, "Cancel"),
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: function () {
+                    model.setLayout(currLayout);
+                    handleClose();
+                } }, "Submit"))));
+}
+exports.default = SetColorDialog;
+function SourcesGrid(_a) {
+    var rows = _a.rows, onChange = _a.onChange, showTips = _a.showTips;
+    var _b = __read((0, react_1.useState)(null), 2), anchorEl = _b[0], setAnchorEl = _b[1];
+    var _c = __read((0, react_1.useState)([]), 2), selected = _c[0], setSelected = _c[1];
+    // @ts-ignore
+    var _d = rows[0], _name = _d.name, _color = _d.color, _baseUri = _d.baseUri, rest = __rest(_d, ["name", "color", "baseUri"]);
+    // similar to BaseFeatureDetail data-grid for auto-measuring columns
+    var columns = __spreadArray([
+        {
+            field: 'color',
+            headerName: 'Color',
+            renderCell: function (params) {
+                var value = params.value, id = params.id;
+                return (react_1.default.createElement(ColorPicker_1.default, { color: value || 'blue', onChange: function (c) {
+                        var elt = rows.find(function (f) { return f.name === id; });
+                        if (elt) {
+                            elt.color = c;
+                        }
+                        onChange(__spreadArray([], __read(rows), false));
+                    } }));
+            },
+        },
+        {
+            field: 'name',
+            sortingOrder: [null],
+            headerName: 'Name',
+            width: (0, util_1.measureGridWidth)(rows.map(function (r) { return r.name; })),
+        }
+    ], __read(Object.keys(rest).map(function (val) { return ({
+        field: val,
+        sortingOrder: [null],
+        renderCell: function (params) {
+            var value = params.value;
+            return (0, util_1.isUriLocation)(value) ? react_1.default.createElement(BaseFeatureDetail_1.UriLink, { value: value }) : (0, util_1.getStr)(value);
+        },
+        // @ts-ignore
+        width: (0, util_1.measureGridWidth)(rows.map(function (r) { return r[val]; })),
+    }); })), false);
+    // this helps keep track of the selection, even though it is not used
+    // anywhere except inside the picker
+    var _e = __read((0, react_1.useState)('blue'), 2), widgetColor = _e[0], setWidgetColor = _e[1];
+    var _f = __read((0, react_1.useState)({ idx: 0, field: null }), 2), currSort = _f[0], setCurrSort = _f[1];
+    return (react_1.default.createElement("div", null,
+        react_1.default.createElement(material_1.Button, { disabled: !selected.length, onClick: function (event) { return setAnchorEl(event.currentTarget); } }, "Change color of selected items"),
+        react_1.default.createElement(material_1.Button, { onClick: function () { return onChange((0, util_2.moveUp)(__spreadArray([], __read(rows), false), selected)); }, disabled: !selected.length },
+            react_1.default.createElement(KeyboardArrowUp_1.default, null),
+            showTips ? 'Move selected items up' : null),
+        react_1.default.createElement(material_1.Button, { onClick: function () { return onChange((0, util_2.moveDown)(__spreadArray([], __read(rows), false), selected)); }, disabled: !selected.length },
+            react_1.default.createElement(KeyboardArrowDown_1.default, null),
+            showTips ? 'Move selected items down' : null),
+        react_1.default.createElement(material_1.Button, { onClick: function () { return onChange((0, util_2.moveUp)(__spreadArray([], __read(rows), false), selected, rows.length)); }, disabled: !selected.length },
+            react_1.default.createElement(KeyboardDoubleArrowUp_1.default, null),
+            showTips ? 'Move selected items to top' : null),
+        react_1.default.createElement(material_1.Button, { onClick: function () { return onChange((0, util_2.moveDown)(__spreadArray([], __read(rows), false), selected, rows.length)); }, disabled: !selected.length },
+            react_1.default.createElement(KeyboardDoubleArrowDown_1.default, null),
+            showTips ? 'Move selected items to bottom' : null),
+        react_1.default.createElement(ColorPicker_1.ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: function (c) {
+                setWidgetColor(c);
+                selected.forEach(function (id) {
+                    var elt = rows.find(function (f) { return f.name === id; });
+                    if (elt) {
+                        elt.color = c;
+                    }
+                });
+                onChange(__spreadArray([], __read(rows), false));
+            }, onClose: function () { return setAnchorEl(null); } }),
+        react_1.default.createElement("div", { style: { height: 400, width: '100%' } },
+            react_1.default.createElement(x_data_grid_1.DataGrid, { getRowId: function (row) { return row.name; }, checkboxSelection: true, disableSelectionOnClick: true, onSelectionModelChange: function (arg) { return setSelected(arg); }, rows: rows, rowHeight: 25, headerHeight: 33, columns: columns, sortModel: [
+                /* we control the sort as a controlled component using onSortModelChange */
+                ], onSortModelChange: function (args) {
+                    var sort = args[0];
+                    var idx = (currSort.idx + 1) % 2;
+                    var field = (sort === null || sort === void 0 ? void 0 : sort.field) || currSort.field;
+                    setCurrSort({ idx: idx, field: field });
+                    onChange(field
+                        ? __spreadArray([], __read(rows), false).sort(function (a, b) {
+                            // @ts-ignore
+                            var aa = (0, util_1.getStr)(a[field]);
+                            // @ts-ignore
+                            var bb = (0, util_1.getStr)(b[field]);
+                            return idx === 1
+                                ? aa.localeCompare(bb)
+                                : bb.localeCompare(aa);
+                        })
+                        : rows);
+                } }))));
+}
+//# sourceMappingURL=SetColorDialog.js.map

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map

@@ -0,0 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts

@@ -0,0 +1,11 @@
+/// <reference types="react" />
+export default function SetMinMaxDlg(props: {
+    model: {
+        minScore: number;
+        maxScore: number;
+        scaleType: string;
+        setMinScore: Function;
+        setMaxScore: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;

package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js

@@ -0,0 +1,91 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var material_1 = require("@mui/material");
+var mui_1 = require("tss-react/mui");
+var Close_1 = __importDefault(require("@mui/icons-material/Close"));
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+    root: {},
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}); });
+function SetMinMaxDlg(props) {
+    var classes = useStyles().classes;
+    var model = props.model, handleClose = props.handleClose;
+    var minScore = model.minScore, maxScore = model.maxScore, scaleType = model.scaleType;
+    var _a = __read((0, react_1.useState)("".concat(minScore !== Number.MIN_VALUE ? minScore : '')), 2), min = _a[0], setMin = _a[1];
+    var _b = __read((0, react_1.useState)("".concat(maxScore !== Number.MAX_VALUE ? maxScore : '')), 2), max = _b[0], setMax = _b[1];
+    var ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
+        ? +max > +min
+        : true;
+    var logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
+    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose },
+        react_1.default.createElement(material_1.DialogTitle, null,
+            "Set min/max score for track",
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: handleClose },
+                react_1.default.createElement(Close_1.default, null))),
+        react_1.default.createElement(material_1.DialogContent, { style: { overflowX: 'hidden' } },
+            react_1.default.createElement("div", { className: classes.root },
+                react_1.default.createElement(material_1.Typography, null, "Enter min/max score: "),
+                !ok ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
+                !logOk ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
+                react_1.default.createElement(material_1.TextField, { value: min, onChange: function (event) {
+                        setMin(event.target.value);
+                    }, placeholder: "Enter min score" }),
+                react_1.default.createElement(material_1.TextField, { value: max, onChange: function (event) {
+                        setMax(event.target.value);
+                    }, placeholder: "Enter max score" }),
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: function () {
+                        model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
+                        model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
+                        handleClose();
+                    } }, "Submit")))));
+}
+exports.default = SetMinMaxDlg;
+//# sourceMappingURL=SetMinMaxDialog.js.map

package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map

@@ -0,0 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts

@@ -0,0 +1,25 @@
+import React from 'react';
+import { Feature } from '@jbrowse/core/util';
+import { Source } from '../../util';
+import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
+declare const TooltipContents: React.ForwardRefExoticComponent<{
+    model: {
+        sources: Source[];
+    };
+    feature: Feature;
+} & React.RefAttributes<HTMLDivElement>>;
+declare type Coord = [number, number];
+declare const WiggleTooltip: (props: {
+    model: {
+        featureUnderMouse: Feature;
+        sources: Source[];
+        rowHeight: number;
+    };
+    height: number;
+    offsetMouseCoord: Coord;
+    clientMouseCoord: Coord;
+    clientRect?: DOMRect;
+    TooltipContents?: TooltipContentsComponent;
+}) => JSX.Element;
+export default WiggleTooltip;
+export { Tooltip };