@jbrowse/plugin-wiggle 2.0.1 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
- package/dist/BigWigAdapter/BigWigAdapter.js +59 -29
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/dist/BigWigAdapter/configSchema.js +5 -0
- package/dist/BigWigAdapter/configSchema.js.map +1 -1
- package/dist/BigWigAdapter/index.d.ts +3 -1
- package/dist/BigWigAdapter/index.js +39 -3
- package/dist/BigWigAdapter/index.js.map +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +68 -0
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
- package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
- package/dist/CreateMultiWiggleExtension/index.js +111 -0
- package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
- package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
- package/dist/DensityRenderer/DensityRenderer.js +74 -0
- package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
- package/dist/DensityRenderer/configSchema.d.ts +2 -0
- package/dist/DensityRenderer/configSchema.js +10 -0
- package/dist/DensityRenderer/configSchema.js.map +1 -0
- package/dist/DensityRenderer/index.d.ts +3 -6
- package/dist/DensityRenderer/index.js +12 -149
- package/dist/DensityRenderer/index.js.map +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +4 -103
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +2 -0
- package/dist/LinePlotRenderer/configSchema.js +16 -0
- package/dist/LinePlotRenderer/configSchema.js.map +1 -0
- package/dist/LinePlotRenderer/index.d.ts +3 -3
- package/dist/LinePlotRenderer/index.js +13 -14
- package/dist/LinePlotRenderer/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +8 -16
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
- package/dist/LinearWiggleDisplay/components/Tooltip.js +11 -122
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
- package/dist/LinearWiggleDisplay/index.d.ts +7 -3
- package/dist/LinearWiggleDisplay/index.js +23 -8
- package/dist/LinearWiggleDisplay/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +24 -5
- package/dist/LinearWiggleDisplay/models/model.js +79 -126
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +135 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
- package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
- package/dist/MultiDensityRenderer/configSchema.js +10 -0
- package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
- package/dist/MultiDensityRenderer/index.d.ts +3 -0
- package/dist/MultiDensityRenderer/index.js +19 -0
- package/dist/MultiDensityRenderer/index.js.map +1 -0
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
- package/dist/MultiLineRenderer/MultiLineRenderer.js +124 -0
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
- package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
- package/dist/MultiLineRenderer/configSchema.js +23 -0
- package/dist/MultiLineRenderer/configSchema.js.map +1 -0
- package/dist/MultiLineRenderer/index.d.ts +3 -0
- package/dist/MultiLineRenderer/index.js +19 -0
- package/dist/MultiLineRenderer/index.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +239 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +91 -0
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +78 -0
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +144 -0
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +26 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
- package/dist/MultiLinearWiggleDisplay/components/util.js +38 -0
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
- package/dist/MultiLinearWiggleDisplay/index.js +23 -0
- package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
- package/dist/MultiLinearWiggleDisplay/models/model.js +675 -0
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
- package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
- package/dist/MultiQuantitativeTrack/index.js +19 -0
- package/dist/MultiQuantitativeTrack/index.js.map +1 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +131 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
- package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
- package/dist/MultiRowLineRenderer/configSchema.js +23 -0
- package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
- package/dist/MultiRowLineRenderer/index.d.ts +3 -0
- package/dist/MultiRowLineRenderer/index.js +19 -0
- package/dist/MultiRowLineRenderer/index.js.map +1 -0
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +164 -0
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
- package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
- package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
- package/dist/MultiRowXYPlotRenderer/index.js +19 -0
- package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +244 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
- package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
- package/dist/MultiWiggleAdapter/configSchema.js +14 -0
- package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
- package/dist/MultiWiggleAdapter/index.d.ts +3 -0
- package/dist/MultiWiggleAdapter/index.js +47 -0
- package/dist/MultiWiggleAdapter/index.js.map +1 -0
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +139 -0
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
- package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
- package/dist/MultiWiggleAddTrackWidget/index.js +19 -0
- package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
- package/dist/MultiWiggleRendering.d.ts +21 -0
- package/dist/MultiWiggleRendering.js +164 -0
- package/dist/MultiWiggleRendering.js.map +1 -0
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +153 -0
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
- package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
- package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
- package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
- package/dist/MultiXYPlotRenderer/index.js +19 -0
- package/dist/MultiXYPlotRenderer/index.js.map +1 -0
- package/dist/QuantitativeTrack/index.d.ts +3 -0
- package/dist/QuantitativeTrack/index.js +19 -0
- package/dist/QuantitativeTrack/index.js.map +1 -0
- package/dist/Tooltip.d.ts +20 -0
- package/dist/Tooltip.js +124 -0
- package/dist/Tooltip.js.map +1 -0
- package/dist/WiggleBaseRenderer.d.ts +9 -10
- package/dist/WiggleBaseRenderer.js +23 -10
- package/dist/WiggleBaseRenderer.js.map +1 -1
- package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
- package/dist/WiggleRPC/rpcMethods.js +91 -16
- package/dist/WiggleRPC/rpcMethods.js.map +1 -1
- package/dist/WiggleRendering.d.ts +1 -1
- package/dist/WiggleRendering.js +4 -8
- package/dist/WiggleRendering.js.map +1 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +23 -126
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
- package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
- package/dist/XYPlotRenderer/configSchema.js +31 -0
- package/dist/XYPlotRenderer/configSchema.js.map +1 -0
- package/dist/XYPlotRenderer/index.d.ts +7 -3
- package/dist/XYPlotRenderer/index.js +17 -25
- package/dist/XYPlotRenderer/index.js.map +1 -1
- package/dist/configSchema.js +0 -5
- package/dist/configSchema.js.map +1 -1
- package/dist/drawxy.d.ts +50 -0
- package/dist/drawxy.js +411 -0
- package/dist/drawxy.js.map +1 -0
- package/dist/index.d.ts +79 -21
- package/dist/index.js +56 -89
- package/dist/index.js.map +1 -1
- package/dist/util.d.ts +34 -1
- package/dist/util.js +159 -1
- package/dist/util.js.map +1 -1
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +8 -7
- package/esm/BigWigAdapter/BigWigAdapter.js +37 -18
- package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/esm/BigWigAdapter/configSchema.js +5 -0
- package/esm/BigWigAdapter/configSchema.js.map +1 -1
- package/esm/BigWigAdapter/index.d.ts +3 -1
- package/esm/BigWigAdapter/index.js +14 -1
- package/esm/BigWigAdapter/index.js.map +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
- package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
- package/esm/CreateMultiWiggleExtension/index.js +51 -0
- package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
- package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
- package/esm/DensityRenderer/DensityRenderer.js +8 -0
- package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
- package/esm/DensityRenderer/configSchema.d.ts +2 -0
- package/esm/DensityRenderer/configSchema.js +5 -0
- package/esm/DensityRenderer/configSchema.js.map +1 -0
- package/esm/DensityRenderer/index.d.ts +3 -6
- package/esm/DensityRenderer/index.js +11 -38
- package/esm/DensityRenderer/index.js.map +1 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +7 -65
- package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
- package/esm/LinePlotRenderer/configSchema.js +11 -0
- package/esm/LinePlotRenderer/configSchema.js.map +1 -0
- package/esm/LinePlotRenderer/index.d.ts +3 -3
- package/esm/LinePlotRenderer/index.js +11 -11
- package/esm/LinePlotRenderer/index.js.map +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +9 -16
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
- package/esm/LinearWiggleDisplay/components/Tooltip.js +3 -76
- package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
- package/esm/LinearWiggleDisplay/index.d.ts +7 -3
- package/esm/LinearWiggleDisplay/index.js +20 -3
- package/esm/LinearWiggleDisplay/index.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/model.d.ts +24 -5
- package/esm/LinearWiggleDisplay/models/model.js +87 -133
- package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
- package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
- package/esm/MultiDensityRenderer/configSchema.js +5 -0
- package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
- package/esm/MultiDensityRenderer/index.d.ts +3 -0
- package/esm/MultiDensityRenderer/index.js +12 -0
- package/esm/MultiDensityRenderer/index.js.map +1 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
- package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
- package/esm/MultiLineRenderer/configSchema.js +18 -0
- package/esm/MultiLineRenderer/configSchema.js.map +1 -0
- package/esm/MultiLineRenderer/index.d.ts +3 -0
- package/esm/MultiLineRenderer/index.js +12 -0
- package/esm/MultiLineRenderer/index.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
- package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
- package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
- package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
- package/esm/MultiLinearWiggleDisplay/index.js +18 -0
- package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
- package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
- package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
- package/esm/MultiQuantitativeTrack/index.js +14 -0
- package/esm/MultiQuantitativeTrack/index.js.map +1 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
- package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
- package/esm/MultiRowLineRenderer/configSchema.js +18 -0
- package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
- package/esm/MultiRowLineRenderer/index.d.ts +3 -0
- package/esm/MultiRowLineRenderer/index.js +12 -0
- package/esm/MultiRowLineRenderer/index.js.map +1 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
- package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
- package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
- package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
- package/esm/MultiRowXYPlotRenderer/index.js +12 -0
- package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +87 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
- package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
- package/esm/MultiWiggleAdapter/configSchema.js +12 -0
- package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
- package/esm/MultiWiggleAdapter/index.d.ts +3 -0
- package/esm/MultiWiggleAdapter/index.js +15 -0
- package/esm/MultiWiggleAdapter/index.js.map +1 -0
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
- package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
- package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
- package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
- package/esm/MultiWiggleRendering.d.ts +21 -0
- package/esm/MultiWiggleRendering.js +75 -0
- package/esm/MultiWiggleRendering.js.map +1 -0
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
- package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
- package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
- package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
- package/esm/MultiXYPlotRenderer/index.js +12 -0
- package/esm/MultiXYPlotRenderer/index.js.map +1 -0
- package/esm/QuantitativeTrack/index.d.ts +3 -0
- package/esm/QuantitativeTrack/index.js +14 -0
- package/esm/QuantitativeTrack/index.js.map +1 -0
- package/esm/Tooltip.d.ts +20 -0
- package/esm/Tooltip.js +71 -0
- package/esm/Tooltip.js.map +1 -0
- package/esm/WiggleBaseRenderer.d.ts +9 -10
- package/esm/WiggleBaseRenderer.js +7 -5
- package/esm/WiggleBaseRenderer.js.map +1 -1
- package/esm/WiggleRPC/rpcMethods.d.ts +17 -1
- package/esm/WiggleRPC/rpcMethods.js +49 -7
- package/esm/WiggleRPC/rpcMethods.js.map +1 -1
- package/esm/WiggleRendering.d.ts +1 -1
- package/esm/WiggleRendering.js +4 -8
- package/esm/WiggleRendering.js.map +1 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js +16 -99
- package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
- package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
- package/esm/XYPlotRenderer/configSchema.js +26 -0
- package/esm/XYPlotRenderer/configSchema.js.map +1 -0
- package/esm/XYPlotRenderer/index.d.ts +7 -3
- package/esm/XYPlotRenderer/index.js +12 -22
- package/esm/XYPlotRenderer/index.js.map +1 -1
- package/esm/configSchema.js +0 -5
- package/esm/configSchema.js.map +1 -1
- package/esm/drawxy.d.ts +50 -0
- package/esm/drawxy.js +286 -0
- package/esm/drawxy.js.map +1 -0
- package/esm/index.d.ts +79 -21
- package/esm/index.js +49 -74
- package/esm/index.js.map +1 -1
- package/esm/util.d.ts +34 -1
- package/esm/util.js +108 -0
- package/esm/util.js.map +1 -1
- package/package.json +11 -5
- package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
- package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
- package/src/BigWigAdapter/configSchema.ts +5 -0
- package/src/BigWigAdapter/index.ts +19 -1
- package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
- package/src/CreateMultiWiggleExtension/index.ts +57 -0
- package/src/DensityRenderer/DensityRenderer.test.js +8 -2
- package/src/DensityRenderer/DensityRenderer.ts +14 -0
- package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
- package/src/DensityRenderer/configSchema.ts +11 -0
- package/src/DensityRenderer/index.ts +14 -53
- package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
- package/src/LinePlotRenderer/{index.js → configSchema.ts} +3 -4
- package/src/LinePlotRenderer/index.ts +16 -0
- package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +17 -19
- package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -122
- package/src/LinearWiggleDisplay/index.ts +24 -3
- package/src/LinearWiggleDisplay/models/model.tsx +98 -174
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
- package/src/MultiDensityRenderer/configSchema.ts +10 -0
- package/src/MultiDensityRenderer/index.ts +16 -0
- package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
- package/src/MultiLineRenderer/configSchema.ts +24 -0
- package/src/MultiLineRenderer/index.ts +17 -0
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
- package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
- package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
- package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
- package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
- package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
- package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
- package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
- package/src/MultiLinearWiggleDisplay/index.ts +20 -0
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
- package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
- package/src/MultiQuantitativeTrack/index.ts +26 -0
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
- package/src/MultiRowLineRenderer/configSchema.ts +25 -0
- package/src/MultiRowLineRenderer/index.ts +16 -0
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
- package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
- package/src/MultiRowXYPlotRenderer/index.ts +16 -0
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +120 -0
- package/src/MultiWiggleAdapter/configSchema.ts +16 -0
- package/src/MultiWiggleAdapter/index.ts +20 -0
- package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
- package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
- package/src/MultiWiggleRendering.tsx +125 -0
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
- package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
- package/src/MultiXYPlotRenderer/index.ts +17 -0
- package/src/QuantitativeTrack/index.ts +26 -0
- package/src/Tooltip.tsx +123 -0
- package/src/WiggleBaseRenderer.tsx +15 -9
- package/src/WiggleRPC/rpcMethods.ts +68 -17
- package/src/WiggleRendering.tsx +12 -18
- package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
- package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -171
- package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
- package/src/XYPlotRenderer/configSchema.ts +32 -0
- package/src/XYPlotRenderer/index.ts +16 -27
- package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
- package/src/configSchema.ts +0 -5
- package/src/declare.d.ts +0 -1
- package/src/drawxy.ts +387 -0
- package/src/index.ts +75 -129
- package/src/util.ts +174 -0
- package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
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import { readConfObject } from '@jbrowse/core/configuration';
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import { featureSpanPx } from '@jbrowse/core/util';
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import { getScale } from '../util';
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import WiggleBaseRenderer from '../WiggleBaseRenderer';
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import { YSCALEBAR_LABEL_OFFSET } from '../
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import { YSCALEBAR_LABEL_OFFSET } from '../util';
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import { drawLine } from '../drawxy';
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export default class LinePlotRenderer extends WiggleBaseRenderer {
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async draw(ctx, props) {
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// wiggle display, and makes the height of the actual drawn area add
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// "padding" to the top and bottom of the display
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const height = unadjustedHeight - offset * 2;
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const clipColor = readConfObject(config, 'clipColor');
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const highlightColor = readConfObject(config, 'highlightColor');
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const scale = getScale({ ...scaleOpts, range: [0, height] });
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const [niceMin, niceMax] = scale.domain();
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const toY = rawscore => height - scale(rawscore) + offset;
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const colorCallback = readConfObject(config, 'color') === '#f0f'
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? () => 'grey'
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: feature => readConfObject(config, 'color', { feature });
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let lastVal;
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for (const feature of features.values()) {
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const [leftPx, rightPx] = featureSpanPx(feature, region, bpPerPx);
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const score = feature.get('score');
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const lowClipping = score < niceMin;
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const highClipping = score > niceMax;
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const w = rightPx - leftPx + 0.3; // fudge factor for subpixel rendering
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const c = colorCallback(feature);
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ctx.strokeStyle = c;
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ctx.beginPath();
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if (!region.reversed) {
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ctx.moveTo(leftPx, toY(typeof lastVal !== 'undefined' ? lastVal : score));
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ctx.lineTo(leftPx, toY(score));
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ctx.lineTo(rightPx, toY(score));
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}
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else {
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ctx.moveTo(rightPx, toY(typeof lastVal !== 'undefined' ? lastVal : score));
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ctx.lineTo(rightPx, toY(score));
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ctx.lineTo(leftPx, toY(score));
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}
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ctx.stroke();
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lastVal = score;
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if (highClipping) {
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ctx.fillStyle = clipColor;
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ctx.fillRect(leftPx, 0, w, 4);
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}
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else if (lowClipping && scaleOpts.scaleType !== 'log') {
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ctx.fillStyle = clipColor;
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ctx.fillRect(leftPx, height - 4, w, height);
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}
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if (feature.get('highlighted')) {
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ctx.fillStyle = highlightColor;
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ctx.fillRect(leftPx, 0, w, height);
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}
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}
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if (displayCrossHatches) {
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ctx.lineWidth = 1;
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ctx.strokeStyle = 'rgba(200,200,200,0.8)';
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values.forEach(tick => {
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ctx.beginPath();
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ctx.moveTo(0, Math.round(toY(tick)));
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ctx.lineTo(width, Math.round(toY(tick)));
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ctx.stroke();
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});
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}
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return drawLine(ctx, {
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...props,
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offset: YSCALEBAR_LABEL_OFFSET,
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colorCallback: () => 'grey',
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});
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}
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}
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//# sourceMappingURL=LinePlotRenderer.js.map
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{"version":3,"file":"LinePlotRenderer.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/LinePlotRenderer.
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{"version":3,"file":"LinePlotRenderer.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/LinePlotRenderer.ts"],"names":[],"mappings":"AAAA,OAAO,kBAEN,MAAM,uBAAuB,CAAA;AAE9B,OAAO,EAAE,sBAAsB,EAAE,MAAM,SAAS,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAA;AAEpC,MAAM,CAAC,OAAO,OAAO,gBAAiB,SAAQ,kBAAkB;IAC9D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,OAAO,QAAQ,CAAC,GAAG,EAAE;YACnB,GAAG,KAAK;YACR,MAAM,EAAE,sBAAsB;YAC9B,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM;SAC5B,CAAC,CAAA;IACJ,CAAC;CACF"}
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import { ConfigurationSchema } from '@jbrowse/core/configuration';
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import ConfigSchema from '../configSchema';
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const configSchema = ConfigurationSchema('LinePlotRenderer', {
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displayCrossHatches: {
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type: 'boolean',
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description: 'choose to draw cross hatches (sideways lines)',
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defaultValue: false,
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},
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}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
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export default configSchema;
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//# sourceMappingURL=configSchema.js.map
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,MAAM,YAAY,GAAG,mBAAmB,CACtC,kBAAkB,EAClB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
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export
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: (pluginManager: PluginManager) => void;
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export default _default;
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import
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import
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export
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}
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}
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import configSchema from './configSchema';
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2
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import ReactComponent from '../WiggleRendering';
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3
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+
import LinePlotRenderer from './LinePlotRenderer';
|
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4
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+
export default (pluginManager) => {
|
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5
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+
pluginManager.addRendererType(() => new LinePlotRenderer({
|
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6
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name: 'LinePlotRenderer',
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ReactComponent,
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configSchema,
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pluginManager,
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}));
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};
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//# sourceMappingURL=index.js.map
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1
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/index.
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/index.ts"],"names":[],"mappings":"AACA,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,oBAAoB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AAEjD,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,gBAAgB,CAAC;QACnB,IAAI,EAAE,kBAAkB;QACxB,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
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@@ -1,10 +1,14 @@
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1
1
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/// <reference types="react" />
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2
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-
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2
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+
declare function SetColorDialog({ model, handleClose, }: {
|
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3
3
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model: {
|
|
4
|
-
color
|
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4
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+
color?: string;
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5
|
+
posColor?: string;
|
|
6
|
+
negColor?: string;
|
|
5
7
|
setColor: (arg?: string) => void;
|
|
6
8
|
setPosColor: (arg?: string) => void;
|
|
7
9
|
setNegColor: (arg?: string) => void;
|
|
8
10
|
};
|
|
9
11
|
handleClose: () => void;
|
|
10
12
|
}): JSX.Element;
|
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13
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+
declare const _default: typeof SetColorDialog;
|
|
14
|
+
export default _default;
|
|
@@ -1,8 +1,9 @@
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|
|
1
1
|
import React, { useState } from 'react';
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2
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+
import { observer } from 'mobx-react';
|
|
2
3
|
import { Button, Dialog, DialogContent, DialogActions, DialogTitle, FormControlLabel, IconButton, Radio, Typography, } from '@mui/material';
|
|
3
4
|
import { makeStyles } from 'tss-react/mui';
|
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4
5
|
import CloseIcon from '@mui/icons-material/Close';
|
|
5
|
-
import {
|
|
6
|
+
import { ColorPicker } from '@jbrowse/core/ui/ColorPicker';
|
|
6
7
|
const useStyles = makeStyles()(theme => ({
|
|
7
8
|
closeButton: {
|
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8
9
|
position: 'absolute',
|
|
@@ -11,16 +12,7 @@ const useStyles = makeStyles()(theme => ({
|
|
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11
12
|
color: theme.palette.grey[500],
|
|
12
13
|
},
|
|
13
14
|
}));
|
|
14
|
-
|
|
15
|
-
// for alpha, can't pass in an rgba string for example
|
|
16
|
-
function serialize(color) {
|
|
17
|
-
if (color instanceof Object) {
|
|
18
|
-
const { r, g, b } = color;
|
|
19
|
-
return `rgb(${r},${g},${b})`;
|
|
20
|
-
}
|
|
21
|
-
return color;
|
|
22
|
-
}
|
|
23
|
-
export default function SetColorDialog({ model, handleClose, }) {
|
|
15
|
+
function SetColorDialog({ model, handleClose, }) {
|
|
24
16
|
const { classes } = useStyles();
|
|
25
17
|
const [posneg, setPosNeg] = useState(false);
|
|
26
18
|
return (React.createElement(Dialog, { open: true, onClose: handleClose },
|
|
@@ -33,17 +25,17 @@ export default function SetColorDialog({ model, handleClose, }) {
|
|
|
33
25
|
React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: 'Positive/negative color' }),
|
|
34
26
|
posneg ? (React.createElement(React.Fragment, null,
|
|
35
27
|
React.createElement(Typography, null, "Positive color"),
|
|
36
|
-
React.createElement(
|
|
37
|
-
model.setPosColor(
|
|
28
|
+
React.createElement(ColorPicker, { color: model.posColor || 'black', onChange: event => {
|
|
29
|
+
model.setPosColor(event);
|
|
38
30
|
model.setColor(undefined);
|
|
39
31
|
} }),
|
|
40
32
|
React.createElement(Typography, null, "Negative color"),
|
|
41
|
-
React.createElement(
|
|
42
|
-
model.setNegColor(
|
|
33
|
+
React.createElement(ColorPicker, { color: model.negColor || 'black', onChange: event => {
|
|
34
|
+
model.setNegColor(event);
|
|
43
35
|
model.setColor(undefined);
|
|
44
36
|
} }))) : (React.createElement(React.Fragment, null,
|
|
45
37
|
React.createElement(Typography, null, "Overall color"),
|
|
46
|
-
React.createElement(
|
|
38
|
+
React.createElement(ColorPicker, { color: model.color || 'black', onChange: event => model.setColor(event) })))),
|
|
47
39
|
React.createElement(DialogActions, null,
|
|
48
40
|
React.createElement(Button, { onClick: () => {
|
|
49
41
|
model.setPosColor(undefined);
|
|
@@ -52,4 +44,5 @@ export default function SetColorDialog({ model, handleClose, }) {
|
|
|
52
44
|
}, color: "secondary", variant: "contained" }, "Restore default"),
|
|
53
45
|
React.createElement(Button, { variant: "contained", color: "primary", type: "submit", onClick: () => handleClose() }, "Submit"))));
|
|
54
46
|
}
|
|
47
|
+
export default observer(SetColorDialog);
|
|
55
48
|
//# sourceMappingURL=SetColorDialog.js.map
|
|
@@ -1 +1 @@
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1
|
-
{"version":3,"file":"SetColorDialog.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/SetColorDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,
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1
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+
{"version":3,"file":"SetColorDialog.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/SetColorDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,WAAW,EAAE,MAAM,8BAA8B,CAAA;AAE1D,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAWZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAE3C,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC/B,oBAAC,WAAW;;YAGV,oBAAC,UAAU,kBACE,OAAO,EAClB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,WAAW;gBAEpB,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,gBAAgB,IACf,OAAO,EAAE,CAAC,MAAM,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EAC/B,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAE,eAAe,GACtB;YACF,oBAAC,gBAAgB,IACf,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,EAC9B,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAE,yBAAyB,GAChC;YAED,MAAM,CAAC,CAAC,CAAC,CACR;gBACE,oBAAC,UAAU,yBAA4B;gBACvC,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,CAAC,QAAQ,IAAI,OAAO,EAChC,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;wBACxB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBAC3B,CAAC,GACD;gBACF,oBAAC,UAAU,yBAA4B;gBAEvC,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,CAAC,QAAQ,IAAI,OAAO,EAChC,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;wBACxB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBAC3B,CAAC,GACD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,UAAU,wBAA2B;gBACtC,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,CAAC,KAAK,IAAI,OAAO,EAC7B,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,GACxC,CACD,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;oBAC5B,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;oBAC5B,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;gBAC3B,CAAC,EACD,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,sBAGZ;YAET,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}
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@@ -1,16 +1,10 @@
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1
1
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import React from 'react';
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import { Feature } from '@jbrowse/core/util
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import { Feature } from '@jbrowse/core/util';
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import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
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declare const TooltipContents: React.ForwardRefExoticComponent<{
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feature: Feature;
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} & React.RefAttributes<HTMLDivElement>>;
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declare type Coord = [number, number];
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declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, }: {
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model: {
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featureUnderMouse: Feature;
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};
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height: number;
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clientMouseCoord: Coord;
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offsetMouseCoord: Coord;
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clientRect?: DOMRect | undefined;
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TooltipContents: React.FC<any>;
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}) => JSX.Element | null;
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declare const WiggleTooltip: (props: {
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model: {
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featureUnderMouse: Feature;
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@@ -19,6 +13,7 @@ declare const WiggleTooltip: (props: {
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offsetMouseCoord: Coord;
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clientMouseCoord: Coord;
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clientRect?: DOMRect;
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TooltipContents?: TooltipContentsComponent;
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}) => JSX.Element;
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export default WiggleTooltip;
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export { Tooltip };
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import React
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import React from 'react';
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import { observer } from 'mobx-react';
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import { alpha, Portal } from '@mui/material';
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import { makeStyles } from 'tss-react/mui';
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// locals
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import
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import {
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// convert to number, apply shortened precision, and render
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function toP(s = 0) {
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return +(+s).toPrecision(6);
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}
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function round(value) {
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return Math.round(value * 1e5) / 1e5;
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}
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import Tooltip from '../../Tooltip';
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import { toP } from '../../util';
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const en = (n) => n.toLocaleString('en-US');
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const useStyles = makeStyles()(theme => ({
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// these styles come from
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// https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
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tooltip: {
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position: 'absolute',
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pointerEvents: 'none',
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backgroundColor: alpha(theme.palette.grey[700], 0.9),
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borderRadius: theme.shape.borderRadius,
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color: theme.palette.common.white,
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fontFamily: theme.typography.fontFamily,
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padding: '4px 8px',
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fontSize: theme.typography.pxToRem(12),
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lineHeight: `${round(14 / 10)}em`,
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wordWrap: 'break-word',
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width: 1,
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height: '100%',
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top: YSCALEBAR_LABEL_OFFSET,
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cursor: 'default',
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position: 'absolute',
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pointerEvents: 'none',
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},
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}));
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7
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const TooltipContents = React.forwardRef(({ feature }, ref) => {
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8
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const start = feature.get('start');
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9
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const end = feature.get('end');
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@@ -62,43 +26,6 @@ const TooltipContents = React.forwardRef(({ feature }, ref) => {
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React.createElement("br", null),
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`${toP(feature.get('score'))}`));
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});
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const Tooltip = observer(({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, }) => {
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const { featureUnderMouse } = model;
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const [width, setWidth] = useState(0);
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const [anchorEl, setAnchorEl] = useState(null);
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const { classes } = useStyles();
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const virtElement = useMemo(() => ({
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getBoundingClientRect: () => {
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const x = clientMouseCoord[0] + width / 2 + 20;
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const y = (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
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return {
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left: x,
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bottom: y,
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right: x,
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width: 0,
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height: 0,
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x,
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y,
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toJSON() { },
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};
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},
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-
}), [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width]);
|
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|
-
const { styles, attributes } = usePopper(virtElement, anchorEl);
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return featureUnderMouse ? (React.createElement(React.Fragment, null,
|
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React.createElement(Portal, null,
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React.createElement("div", { ref: setAnchorEl, className: classes.tooltip,
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// zIndex needed to go over widget drawer
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style: { ...styles.popper, zIndex: 100000 }, ...attributes.popper },
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React.createElement(TooltipContents, { ref: (elt) => {
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-
setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
|
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}, feature: featureUnderMouse }))),
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React.createElement("div", { className: classes.hoverVertical, style: {
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left: offsetMouseCoord[0],
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-
height: height - YSCALEBAR_LABEL_OFFSET * 2,
|
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100
|
-
} }))) : null;
|
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-
});
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102
29
|
const WiggleTooltip = observer((props) => {
|
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103
30
|
return React.createElement(Tooltip, { TooltipContents: TooltipContents, ...props });
|
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31
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});
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"Tooltip.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/Tooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,
|
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1
|
+
{"version":3,"file":"Tooltip.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/Tooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,SAAS;AACT,OAAO,OAAqC,MAAM,eAAe,CAAA;AACjE,OAAO,EAAE,GAAG,EAAE,MAAM,YAAY,CAAA;AAEhC,MAAM,EAAE,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,cAAc,CAAC,OAAO,CAAC,CAAA;AAEnD,MAAM,eAAe,GAAG,KAAK,CAAC,UAAU,CACtC,CAAC,EAAE,OAAO,EAAE,EAAE,GAAG,EAAE,EAAE;IACnB,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IAClC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC9B,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;IACnC,MAAM,GAAG,GAAG,CAAC,IAAI,EAAE,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;SACvE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;SAChB,IAAI,CAAC,GAAG,CAAC,CAAA;IAEZ,OAAO,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,KAAK,SAAS,CAAC,CAAC,CAAC,CAC5C,6BAAK,GAAG,EAAE,GAAG;QACV,GAAG;QACJ,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;QAClC,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC/B,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAC9B,CACP,CAAC,CAAC,CAAC,CACF,6BAAK,GAAG,EAAE,GAAG;QACV,GAAG;QACJ,+BAAM;QACL,GAAG,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,EAAE,CAC3B,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAID,MAAM,aAAa,GAAG,QAAQ,CAC5B,CAAC,KAOA,EAAE,EAAE;IACH,OAAO,oBAAC,OAAO,IAAC,eAAe,EAAE,eAAe,KAAM,KAAK,GAAI,CAAA;AACjE,CAAC,CACF,CAAA;AACD,eAAe,aAAa,CAAA;AAC5B,OAAO,EAAE,OAAO,EAAE,CAAA"}
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@@ -1,3 +1,7 @@
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1
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-
|
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2
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-
|
|
3
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-
|
|
1
|
+
import PluginManager from '@jbrowse/core/PluginManager';
|
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2
|
+
import modelFactory from './models/model';
|
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3
|
+
import ReactComponent from './components/WiggleDisplayComponent';
|
|
4
|
+
import Tooltip from './components/Tooltip';
|
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5
|
+
declare const _default: (pluginManager: PluginManager) => void;
|
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6
|
+
export default _default;
|
|
7
|
+
export { ReactComponent, modelFactory, Tooltip };
|
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@@ -1,4 +1,21 @@
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1
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-
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2
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-
|
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3
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-
|
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1
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+
import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
|
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2
|
+
import configSchemaFactory from './models/configSchema';
|
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3
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+
import modelFactory from './models/model';
|
|
4
|
+
import ReactComponent from './components/WiggleDisplayComponent';
|
|
5
|
+
import Tooltip from './components/Tooltip';
|
|
6
|
+
export default (pluginManager) => {
|
|
7
|
+
pluginManager.addDisplayType(() => {
|
|
8
|
+
const configSchema = configSchemaFactory(pluginManager);
|
|
9
|
+
const stateModel = modelFactory(pluginManager, configSchema);
|
|
10
|
+
return new DisplayType({
|
|
11
|
+
name: 'LinearWiggleDisplay',
|
|
12
|
+
configSchema,
|
|
13
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+
stateModel,
|
|
14
|
+
trackType: 'QuantitativeTrack',
|
|
15
|
+
viewType: 'LinearGenomeView',
|
|
16
|
+
ReactComponent,
|
|
17
|
+
});
|
|
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|
+
});
|
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|
+
};
|
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20
|
+
export { ReactComponent, modelFactory, Tooltip };
|
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4
21
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,qCAAqC,CAAA;AAChE,OAAO,OAAO,MAAM,sBAAsB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,YAAY,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA"}
|
|
@@ -3,7 +3,6 @@ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
|
3
3
|
import { Instance } from 'mobx-state-tree';
|
|
4
4
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
5
5
|
import { Feature } from '@jbrowse/core/util/simpleFeature';
|
|
6
|
-
export declare const YSCALEBAR_LABEL_OFFSET = 5;
|
|
7
6
|
declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
|
|
8
7
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
9
8
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -64,6 +63,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
|
|
|
64
63
|
selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
65
64
|
resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
66
65
|
fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
66
|
+
minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
67
67
|
color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
68
68
|
posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
69
69
|
negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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@@ -209,7 +209,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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};
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statsFetchInProgress: AbortController | undefined;
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} & {
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-
updateStats(
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updateStats(stats: {
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scoreMin: number;
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scoreMax: number;
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}): void;
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@@ -219,7 +219,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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setLoading(aborter: AbortController): void;
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selectFeature(feature: Feature): void;
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setResolution(res: number): void;
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-
setFill(fill:
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+
setFill(fill: number): void;
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toggleLogScale(): void;
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setScaleType(scale?: string): void;
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setSummaryScoreMode(val: string): void;
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@@ -232,6 +232,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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} & {
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readonly TooltipComponent: React.FC<{}>;
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readonly adapterTypeName: any;
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+
readonly rendererTypeNameSimple: any;
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readonly rendererTypeName: string;
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readonly filters: undefined;
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readonly scaleType: any;
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@@ -258,18 +259,36 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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readonly autoscaleType: any;
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readonly displayCrossHatchesSetting: any;
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} & {
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-
readonly ticks:
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+
readonly ticks: {
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+
range: number[];
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+
values: number[];
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+
format: (d: import("d3-scale").NumberValue) => string;
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+
position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
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+
};
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+
readonly adapterCapabilities: string[];
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} & {
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renderProps(): any;
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-
readonly adapterCapabilities: string[];
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readonly hasResolution: boolean;
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readonly hasGlobalStats: boolean;
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+
readonly fillSetting: 2 | 1 | 0;
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} & {
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trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
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+
label: string;
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+
subMenu: {
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+
label: string;
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+
type: string;
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+
checked: boolean;
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+
onClick: () => void;
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+
}[];
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+
type?: undefined;
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+
checked?: undefined;
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+
onClick?: undefined;
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+
} | {
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type: string;
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label: string;
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checked: any;
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onClick: () => void;
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+
subMenu?: undefined;
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})[];
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} & {
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reload(): Promise<void>;
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