@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (414) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  2. package/dist/BigWigAdapter/BigWigAdapter.js +59 -29
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  4. package/dist/BigWigAdapter/configSchema.js +5 -0
  5. package/dist/BigWigAdapter/configSchema.js.map +1 -1
  6. package/dist/BigWigAdapter/index.d.ts +3 -1
  7. package/dist/BigWigAdapter/index.js +39 -3
  8. package/dist/BigWigAdapter/index.js.map +1 -1
  9. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  10. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +68 -0
  11. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  12. package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
  13. package/dist/CreateMultiWiggleExtension/index.js +111 -0
  14. package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
  15. package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
  16. package/dist/DensityRenderer/DensityRenderer.js +74 -0
  17. package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
  18. package/dist/DensityRenderer/configSchema.d.ts +2 -0
  19. package/dist/DensityRenderer/configSchema.js +10 -0
  20. package/dist/DensityRenderer/configSchema.js.map +1 -0
  21. package/dist/DensityRenderer/index.d.ts +3 -6
  22. package/dist/DensityRenderer/index.js +12 -149
  23. package/dist/DensityRenderer/index.js.map +1 -1
  24. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  25. package/dist/LinePlotRenderer/LinePlotRenderer.js +4 -103
  26. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  27. package/dist/LinePlotRenderer/configSchema.d.ts +2 -0
  28. package/dist/LinePlotRenderer/configSchema.js +16 -0
  29. package/dist/LinePlotRenderer/configSchema.js.map +1 -0
  30. package/dist/LinePlotRenderer/index.d.ts +3 -3
  31. package/dist/LinePlotRenderer/index.js +13 -14
  32. package/dist/LinePlotRenderer/index.js.map +1 -1
  33. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  34. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +8 -16
  35. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  36. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  37. package/dist/LinearWiggleDisplay/components/Tooltip.js +11 -122
  38. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  39. package/dist/LinearWiggleDisplay/index.d.ts +7 -3
  40. package/dist/LinearWiggleDisplay/index.js +23 -8
  41. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  42. package/dist/LinearWiggleDisplay/models/model.d.ts +24 -5
  43. package/dist/LinearWiggleDisplay/models/model.js +79 -126
  44. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  45. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  46. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +135 -0
  47. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  48. package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
  49. package/dist/MultiDensityRenderer/configSchema.js +10 -0
  50. package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
  51. package/dist/MultiDensityRenderer/index.d.ts +3 -0
  52. package/dist/MultiDensityRenderer/index.js +19 -0
  53. package/dist/MultiDensityRenderer/index.js.map +1 -0
  54. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  55. package/dist/MultiLineRenderer/MultiLineRenderer.js +124 -0
  56. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  57. package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
  58. package/dist/MultiLineRenderer/configSchema.js +23 -0
  59. package/dist/MultiLineRenderer/configSchema.js.map +1 -0
  60. package/dist/MultiLineRenderer/index.d.ts +3 -0
  61. package/dist/MultiLineRenderer/index.js +19 -0
  62. package/dist/MultiLineRenderer/index.js.map +1 -0
  63. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  64. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +239 -0
  65. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  66. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  67. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +91 -0
  68. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  69. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  70. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +78 -0
  71. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  72. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  73. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +144 -0
  74. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  75. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  76. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +26 -0
  77. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  78. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  79. package/dist/MultiLinearWiggleDisplay/components/util.js +38 -0
  80. package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  81. package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
  82. package/dist/MultiLinearWiggleDisplay/index.js +23 -0
  83. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
  84. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  85. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
  86. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  87. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  88. package/dist/MultiLinearWiggleDisplay/models/model.js +675 -0
  89. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  90. package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
  91. package/dist/MultiQuantitativeTrack/index.js +19 -0
  92. package/dist/MultiQuantitativeTrack/index.js.map +1 -0
  93. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  94. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +131 -0
  95. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  96. package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
  97. package/dist/MultiRowLineRenderer/configSchema.js +23 -0
  98. package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
  99. package/dist/MultiRowLineRenderer/index.d.ts +3 -0
  100. package/dist/MultiRowLineRenderer/index.js +19 -0
  101. package/dist/MultiRowLineRenderer/index.js.map +1 -0
  102. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  103. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +164 -0
  104. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  105. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  106. package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
  107. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  108. package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
  109. package/dist/MultiRowXYPlotRenderer/index.js +19 -0
  110. package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
  111. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  112. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +244 -0
  113. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  114. package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
  115. package/dist/MultiWiggleAdapter/configSchema.js +14 -0
  116. package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
  117. package/dist/MultiWiggleAdapter/index.d.ts +3 -0
  118. package/dist/MultiWiggleAdapter/index.js +47 -0
  119. package/dist/MultiWiggleAdapter/index.js.map +1 -0
  120. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  121. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +139 -0
  122. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  123. package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  124. package/dist/MultiWiggleAddTrackWidget/index.js +19 -0
  125. package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
  126. package/dist/MultiWiggleRendering.d.ts +21 -0
  127. package/dist/MultiWiggleRendering.js +164 -0
  128. package/dist/MultiWiggleRendering.js.map +1 -0
  129. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  130. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +153 -0
  131. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  132. package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  133. package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
  134. package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
  135. package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
  136. package/dist/MultiXYPlotRenderer/index.js +19 -0
  137. package/dist/MultiXYPlotRenderer/index.js.map +1 -0
  138. package/dist/QuantitativeTrack/index.d.ts +3 -0
  139. package/dist/QuantitativeTrack/index.js +19 -0
  140. package/dist/QuantitativeTrack/index.js.map +1 -0
  141. package/dist/Tooltip.d.ts +20 -0
  142. package/dist/Tooltip.js +124 -0
  143. package/dist/Tooltip.js.map +1 -0
  144. package/dist/WiggleBaseRenderer.d.ts +9 -10
  145. package/dist/WiggleBaseRenderer.js +23 -10
  146. package/dist/WiggleBaseRenderer.js.map +1 -1
  147. package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
  148. package/dist/WiggleRPC/rpcMethods.js +91 -16
  149. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  150. package/dist/WiggleRendering.d.ts +1 -1
  151. package/dist/WiggleRendering.js +4 -8
  152. package/dist/WiggleRendering.js.map +1 -1
  153. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  154. package/dist/XYPlotRenderer/XYPlotRenderer.js +23 -126
  155. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  156. package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
  157. package/dist/XYPlotRenderer/configSchema.js +31 -0
  158. package/dist/XYPlotRenderer/configSchema.js.map +1 -0
  159. package/dist/XYPlotRenderer/index.d.ts +7 -3
  160. package/dist/XYPlotRenderer/index.js +17 -25
  161. package/dist/XYPlotRenderer/index.js.map +1 -1
  162. package/dist/configSchema.js +0 -5
  163. package/dist/configSchema.js.map +1 -1
  164. package/dist/drawxy.d.ts +50 -0
  165. package/dist/drawxy.js +411 -0
  166. package/dist/drawxy.js.map +1 -0
  167. package/dist/index.d.ts +79 -21
  168. package/dist/index.js +56 -89
  169. package/dist/index.js.map +1 -1
  170. package/dist/util.d.ts +34 -1
  171. package/dist/util.js +159 -1
  172. package/dist/util.js.map +1 -1
  173. package/esm/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  174. package/esm/BigWigAdapter/BigWigAdapter.js +37 -18
  175. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  176. package/esm/BigWigAdapter/configSchema.js +5 -0
  177. package/esm/BigWigAdapter/configSchema.js.map +1 -1
  178. package/esm/BigWigAdapter/index.d.ts +3 -1
  179. package/esm/BigWigAdapter/index.js +14 -1
  180. package/esm/BigWigAdapter/index.js.map +1 -1
  181. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  182. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
  183. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  184. package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
  185. package/esm/CreateMultiWiggleExtension/index.js +51 -0
  186. package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
  187. package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
  188. package/esm/DensityRenderer/DensityRenderer.js +8 -0
  189. package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
  190. package/esm/DensityRenderer/configSchema.d.ts +2 -0
  191. package/esm/DensityRenderer/configSchema.js +5 -0
  192. package/esm/DensityRenderer/configSchema.js.map +1 -0
  193. package/esm/DensityRenderer/index.d.ts +3 -6
  194. package/esm/DensityRenderer/index.js +11 -38
  195. package/esm/DensityRenderer/index.js.map +1 -1
  196. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  197. package/esm/LinePlotRenderer/LinePlotRenderer.js +7 -65
  198. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  199. package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
  200. package/esm/LinePlotRenderer/configSchema.js +11 -0
  201. package/esm/LinePlotRenderer/configSchema.js.map +1 -0
  202. package/esm/LinePlotRenderer/index.d.ts +3 -3
  203. package/esm/LinePlotRenderer/index.js +11 -11
  204. package/esm/LinePlotRenderer/index.js.map +1 -1
  205. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  206. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +9 -16
  207. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  208. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  209. package/esm/LinearWiggleDisplay/components/Tooltip.js +3 -76
  210. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  211. package/esm/LinearWiggleDisplay/index.d.ts +7 -3
  212. package/esm/LinearWiggleDisplay/index.js +20 -3
  213. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  214. package/esm/LinearWiggleDisplay/models/model.d.ts +24 -5
  215. package/esm/LinearWiggleDisplay/models/model.js +87 -133
  216. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  217. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  218. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
  219. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  220. package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
  221. package/esm/MultiDensityRenderer/configSchema.js +5 -0
  222. package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
  223. package/esm/MultiDensityRenderer/index.d.ts +3 -0
  224. package/esm/MultiDensityRenderer/index.js +12 -0
  225. package/esm/MultiDensityRenderer/index.js.map +1 -0
  226. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  227. package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
  228. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  229. package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
  230. package/esm/MultiLineRenderer/configSchema.js +18 -0
  231. package/esm/MultiLineRenderer/configSchema.js.map +1 -0
  232. package/esm/MultiLineRenderer/index.d.ts +3 -0
  233. package/esm/MultiLineRenderer/index.js +12 -0
  234. package/esm/MultiLineRenderer/index.js.map +1 -0
  235. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  236. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
  237. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  238. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  239. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  240. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  241. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  242. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
  243. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  244. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  245. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
  246. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  247. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  248. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
  249. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  250. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  251. package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
  252. package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  253. package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
  254. package/esm/MultiLinearWiggleDisplay/index.js +18 -0
  255. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
  256. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  257. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
  258. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  259. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  260. package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
  261. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  262. package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
  263. package/esm/MultiQuantitativeTrack/index.js +14 -0
  264. package/esm/MultiQuantitativeTrack/index.js.map +1 -0
  265. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  266. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
  267. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  268. package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
  269. package/esm/MultiRowLineRenderer/configSchema.js +18 -0
  270. package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
  271. package/esm/MultiRowLineRenderer/index.d.ts +3 -0
  272. package/esm/MultiRowLineRenderer/index.js +12 -0
  273. package/esm/MultiRowLineRenderer/index.js.map +1 -0
  274. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  275. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
  276. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  277. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  278. package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
  279. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  280. package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
  281. package/esm/MultiRowXYPlotRenderer/index.js +12 -0
  282. package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
  283. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  284. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +87 -0
  285. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  286. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
  287. package/esm/MultiWiggleAdapter/configSchema.js +12 -0
  288. package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
  289. package/esm/MultiWiggleAdapter/index.d.ts +3 -0
  290. package/esm/MultiWiggleAdapter/index.js +15 -0
  291. package/esm/MultiWiggleAdapter/index.js.map +1 -0
  292. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  293. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
  294. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  295. package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  296. package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
  297. package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
  298. package/esm/MultiWiggleRendering.d.ts +21 -0
  299. package/esm/MultiWiggleRendering.js +75 -0
  300. package/esm/MultiWiggleRendering.js.map +1 -0
  301. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  302. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
  303. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  304. package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  305. package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
  306. package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
  307. package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
  308. package/esm/MultiXYPlotRenderer/index.js +12 -0
  309. package/esm/MultiXYPlotRenderer/index.js.map +1 -0
  310. package/esm/QuantitativeTrack/index.d.ts +3 -0
  311. package/esm/QuantitativeTrack/index.js +14 -0
  312. package/esm/QuantitativeTrack/index.js.map +1 -0
  313. package/esm/Tooltip.d.ts +20 -0
  314. package/esm/Tooltip.js +71 -0
  315. package/esm/Tooltip.js.map +1 -0
  316. package/esm/WiggleBaseRenderer.d.ts +9 -10
  317. package/esm/WiggleBaseRenderer.js +7 -5
  318. package/esm/WiggleBaseRenderer.js.map +1 -1
  319. package/esm/WiggleRPC/rpcMethods.d.ts +17 -1
  320. package/esm/WiggleRPC/rpcMethods.js +49 -7
  321. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  322. package/esm/WiggleRendering.d.ts +1 -1
  323. package/esm/WiggleRendering.js +4 -8
  324. package/esm/WiggleRendering.js.map +1 -1
  325. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  326. package/esm/XYPlotRenderer/XYPlotRenderer.js +16 -99
  327. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  328. package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
  329. package/esm/XYPlotRenderer/configSchema.js +26 -0
  330. package/esm/XYPlotRenderer/configSchema.js.map +1 -0
  331. package/esm/XYPlotRenderer/index.d.ts +7 -3
  332. package/esm/XYPlotRenderer/index.js +12 -22
  333. package/esm/XYPlotRenderer/index.js.map +1 -1
  334. package/esm/configSchema.js +0 -5
  335. package/esm/configSchema.js.map +1 -1
  336. package/esm/drawxy.d.ts +50 -0
  337. package/esm/drawxy.js +286 -0
  338. package/esm/drawxy.js.map +1 -0
  339. package/esm/index.d.ts +79 -21
  340. package/esm/index.js +49 -74
  341. package/esm/index.js.map +1 -1
  342. package/esm/util.d.ts +34 -1
  343. package/esm/util.js +108 -0
  344. package/esm/util.js.map +1 -1
  345. package/package.json +11 -5
  346. package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
  347. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
  348. package/src/BigWigAdapter/configSchema.ts +5 -0
  349. package/src/BigWigAdapter/index.ts +19 -1
  350. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
  351. package/src/CreateMultiWiggleExtension/index.ts +57 -0
  352. package/src/DensityRenderer/DensityRenderer.test.js +8 -2
  353. package/src/DensityRenderer/DensityRenderer.ts +14 -0
  354. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
  355. package/src/DensityRenderer/configSchema.ts +11 -0
  356. package/src/DensityRenderer/index.ts +14 -53
  357. package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
  358. package/src/LinePlotRenderer/{index.js → configSchema.ts} +3 -4
  359. package/src/LinePlotRenderer/index.ts +16 -0
  360. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +17 -19
  361. package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -122
  362. package/src/LinearWiggleDisplay/index.ts +24 -3
  363. package/src/LinearWiggleDisplay/models/model.tsx +98 -174
  364. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
  365. package/src/MultiDensityRenderer/configSchema.ts +10 -0
  366. package/src/MultiDensityRenderer/index.ts +16 -0
  367. package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
  368. package/src/MultiLineRenderer/configSchema.ts +24 -0
  369. package/src/MultiLineRenderer/index.ts +17 -0
  370. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
  371. package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
  372. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
  373. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
  374. package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
  375. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
  376. package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
  377. package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
  378. package/src/MultiLinearWiggleDisplay/index.ts +20 -0
  379. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
  380. package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
  381. package/src/MultiQuantitativeTrack/index.ts +26 -0
  382. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
  383. package/src/MultiRowLineRenderer/configSchema.ts +25 -0
  384. package/src/MultiRowLineRenderer/index.ts +16 -0
  385. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
  386. package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
  387. package/src/MultiRowXYPlotRenderer/index.ts +16 -0
  388. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +120 -0
  389. package/src/MultiWiggleAdapter/configSchema.ts +16 -0
  390. package/src/MultiWiggleAdapter/index.ts +20 -0
  391. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  392. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
  393. package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
  394. package/src/MultiWiggleRendering.tsx +125 -0
  395. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
  396. package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
  397. package/src/MultiXYPlotRenderer/index.ts +17 -0
  398. package/src/QuantitativeTrack/index.ts +26 -0
  399. package/src/Tooltip.tsx +123 -0
  400. package/src/WiggleBaseRenderer.tsx +15 -9
  401. package/src/WiggleRPC/rpcMethods.ts +68 -17
  402. package/src/WiggleRendering.tsx +12 -18
  403. package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
  404. package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -171
  405. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
  406. package/src/XYPlotRenderer/configSchema.ts +32 -0
  407. package/src/XYPlotRenderer/index.ts +16 -27
  408. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
  409. package/src/configSchema.ts +0 -5
  410. package/src/declare.d.ts +0 -1
  411. package/src/drawxy.ts +387 -0
  412. package/src/index.ts +75 -129
  413. package/src/util.ts +174 -0
  414. package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
@@ -1,71 +1,13 @@
1
- import { readConfObject } from '@jbrowse/core/configuration';
2
- import { featureSpanPx } from '@jbrowse/core/util';
3
- import { getScale } from '../util';
4
1
  import WiggleBaseRenderer from '../WiggleBaseRenderer';
5
- import { YSCALEBAR_LABEL_OFFSET } from '../LinearWiggleDisplay/models/model';
2
+ import { YSCALEBAR_LABEL_OFFSET } from '../util';
3
+ import { drawLine } from '../drawxy';
6
4
  export default class LinePlotRenderer extends WiggleBaseRenderer {
7
5
  async draw(ctx, props) {
8
- const { features, regions, bpPerPx, scaleOpts, height: unadjustedHeight, ticks: { values }, displayCrossHatches, config, } = props;
9
- const [region] = regions;
10
- const width = (region.end - region.start) / bpPerPx;
11
- const offset = YSCALEBAR_LABEL_OFFSET;
12
- // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
13
- // wiggle display, and makes the height of the actual drawn area add
14
- // "padding" to the top and bottom of the display
15
- const height = unadjustedHeight - offset * 2;
16
- const clipColor = readConfObject(config, 'clipColor');
17
- const highlightColor = readConfObject(config, 'highlightColor');
18
- const scale = getScale({ ...scaleOpts, range: [0, height] });
19
- const [niceMin, niceMax] = scale.domain();
20
- const toY = rawscore => height - scale(rawscore) + offset;
21
- const colorCallback = readConfObject(config, 'color') === '#f0f'
22
- ? () => 'grey'
23
- : feature => readConfObject(config, 'color', { feature });
24
- let lastVal;
25
- for (const feature of features.values()) {
26
- const [leftPx, rightPx] = featureSpanPx(feature, region, bpPerPx);
27
- const score = feature.get('score');
28
- const lowClipping = score < niceMin;
29
- const highClipping = score > niceMax;
30
- const w = rightPx - leftPx + 0.3; // fudge factor for subpixel rendering
31
- const c = colorCallback(feature);
32
- ctx.strokeStyle = c;
33
- ctx.beginPath();
34
- if (!region.reversed) {
35
- ctx.moveTo(leftPx, toY(typeof lastVal !== 'undefined' ? lastVal : score));
36
- ctx.lineTo(leftPx, toY(score));
37
- ctx.lineTo(rightPx, toY(score));
38
- }
39
- else {
40
- ctx.moveTo(rightPx, toY(typeof lastVal !== 'undefined' ? lastVal : score));
41
- ctx.lineTo(rightPx, toY(score));
42
- ctx.lineTo(leftPx, toY(score));
43
- }
44
- ctx.stroke();
45
- lastVal = score;
46
- if (highClipping) {
47
- ctx.fillStyle = clipColor;
48
- ctx.fillRect(leftPx, 0, w, 4);
49
- }
50
- else if (lowClipping && scaleOpts.scaleType !== 'log') {
51
- ctx.fillStyle = clipColor;
52
- ctx.fillRect(leftPx, height - 4, w, height);
53
- }
54
- if (feature.get('highlighted')) {
55
- ctx.fillStyle = highlightColor;
56
- ctx.fillRect(leftPx, 0, w, height);
57
- }
58
- }
59
- if (displayCrossHatches) {
60
- ctx.lineWidth = 1;
61
- ctx.strokeStyle = 'rgba(200,200,200,0.8)';
62
- values.forEach(tick => {
63
- ctx.beginPath();
64
- ctx.moveTo(0, Math.round(toY(tick)));
65
- ctx.lineTo(width, Math.round(toY(tick)));
66
- ctx.stroke();
67
- });
68
- }
6
+ return drawLine(ctx, {
7
+ ...props,
8
+ offset: YSCALEBAR_LABEL_OFFSET,
9
+ colorCallback: () => 'grey',
10
+ });
69
11
  }
70
12
  }
71
13
  //# sourceMappingURL=LinePlotRenderer.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"LinePlotRenderer.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/LinePlotRenderer.js"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAA;AAClC,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,qCAAqC,CAAA;AAE5E,MAAM,CAAC,OAAO,OAAO,gBAAiB,SAAQ,kBAAkB;IAC9D,KAAK,CAAC,IAAI,CAAC,GAAG,EAAE,KAAK;QACnB,MAAM,EACJ,QAAQ,EACR,OAAO,EACP,OAAO,EACP,SAAS,EACT,MAAM,EAAE,gBAAgB,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,EACjB,mBAAmB,EACnB,MAAM,GACP,GAAG,KAAK,CAAA;QACT,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,MAAM,MAAM,GAAG,sBAAsB,CAAA;QAErC,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,MAAM,GAAG,gBAAgB,GAAG,MAAM,GAAG,CAAC,CAAA;QAC5C,MAAM,SAAS,GAAG,cAAc,CAAC,MAAM,EAAE,WAAW,CAAC,CAAA;QACrD,MAAM,cAAc,GAAG,cAAc,CAAC,MAAM,EAAE,gBAAgB,CAAC,CAAA;QAC/D,MAAM,KAAK,GAAG,QAAQ,CAAC,EAAE,GAAG,SAAS,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,CAAC,EAAE,CAAC,CAAA;QAC5D,MAAM,CAAC,OAAO,EAAE,OAAO,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;QACzC,MAAM,GAAG,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,KAAK,CAAC,QAAQ,CAAC,GAAG,MAAM,CAAA;QACzD,MAAM,aAAa,GACjB,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,MAAM;YACxC,CAAC,CAAC,GAAG,EAAE,CAAC,MAAM;YACd,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC,cAAc,CAAC,MAAM,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,CAAC,CAAA;QAE7D,IAAI,OAAO,CAAA;QACX,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE;YACvC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,aAAa,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACjE,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YAClC,MAAM,WAAW,GAAG,KAAK,GAAG,OAAO,CAAA;YACnC,MAAM,YAAY,GAAG,KAAK,GAAG,OAAO,CAAA;YACpC,MAAM,CAAC,GAAG,OAAO,GAAG,MAAM,GAAG,GAAG,CAAA,CAAC,sCAAsC;YAEvE,MAAM,CAAC,GAAG,aAAa,CAAC,OAAO,CAAC,CAAA;YAEhC,GAAG,CAAC,WAAW,GAAG,CAAC,CAAA;YACnB,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;gBACpB,GAAG,CAAC,MAAM,CACR,MAAM,EACN,GAAG,CAAC,OAAO,OAAO,KAAK,WAAW,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CACtD,CAAA;gBACD,GAAG,CAAC,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAA;gBAC9B,GAAG,CAAC,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAA;aAChC;iBAAM;gBACL,GAAG,CAAC,MAAM,CACR,OAAO,EACP,GAAG,CAAC,OAAO,OAAO,KAAK,WAAW,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CACtD,CAAA;gBACD,GAAG,CAAC,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAA;gBAC/B,GAAG,CAAC,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAA;aAC/B;YACD,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,OAAO,GAAG,KAAK,CAAA;YAEf,IAAI,YAAY,EAAE;gBAChB,GAAG,CAAC,SAAS,GAAG,SAAS,CAAA;gBACzB,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;aAC9B;iBAAM,IAAI,WAAW,IAAI,SAAS,CAAC,SAAS,KAAK,KAAK,EAAE;gBACvD,GAAG,CAAC,SAAS,GAAG,SAAS,CAAA;gBACzB,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,CAAA;aAC5C;YACD,IAAI,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,EAAE;gBAC9B,GAAG,CAAC,SAAS,GAAG,cAAc,CAAA;gBAC9B,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,CAAA;aACnC;SACF;QAED,IAAI,mBAAmB,EAAE;YACvB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;YACjB,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBACpB,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACxC,GAAG,CAAC,MAAM,EAAE,CAAA;YACd,CAAC,CAAC,CAAA;SACH;IACH,CAAC;CACF"}
1
+ {"version":3,"file":"LinePlotRenderer.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/LinePlotRenderer.ts"],"names":[],"mappings":"AAAA,OAAO,kBAEN,MAAM,uBAAuB,CAAA;AAE9B,OAAO,EAAE,sBAAsB,EAAE,MAAM,SAAS,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAA;AAEpC,MAAM,CAAC,OAAO,OAAO,gBAAiB,SAAQ,kBAAkB;IAC9D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,OAAO,QAAQ,CAAC,GAAG,EAAE;YACnB,GAAG,KAAK;YACR,MAAM,EAAE,sBAAsB;YAC9B,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM;SAC5B,CAAC,CAAA;IACJ,CAAC;CACF"}
@@ -0,0 +1,2 @@
1
+ declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default configSchema;
@@ -0,0 +1,11 @@
1
+ import { ConfigurationSchema } from '@jbrowse/core/configuration';
2
+ import ConfigSchema from '../configSchema';
3
+ const configSchema = ConfigurationSchema('LinePlotRenderer', {
4
+ displayCrossHatches: {
5
+ type: 'boolean',
6
+ description: 'choose to draw cross hatches (sideways lines)',
7
+ defaultValue: false,
8
+ },
9
+ }, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
10
+ export default configSchema;
11
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,MAAM,YAAY,GAAG,mBAAmB,CACtC,kBAAkB,EAClB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
@@ -1,3 +1,3 @@
1
- export { default as ReactComponent } from "../WiggleRendering";
2
- export { default } from "./LinePlotRenderer";
3
- export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -1,12 +1,12 @@
1
- import { ConfigurationSchema } from '@jbrowse/core/configuration';
2
- import ConfigSchema from '../configSchema';
3
- export { default as ReactComponent } from '../WiggleRendering';
4
- export { default } from './LinePlotRenderer';
5
- export const configSchema = ConfigurationSchema('LinePlotRenderer', {
6
- displayCrossHatches: {
7
- type: 'boolean',
8
- description: 'choose to draw cross hatches (sideways lines)',
9
- defaultValue: false,
10
- },
11
- }, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
1
+ import configSchema from './configSchema';
2
+ import ReactComponent from '../WiggleRendering';
3
+ import LinePlotRenderer from './LinePlotRenderer';
4
+ export default (pluginManager) => {
5
+ pluginManager.addRendererType(() => new LinePlotRenderer({
6
+ name: 'LinePlotRenderer',
7
+ ReactComponent,
8
+ configSchema,
9
+ pluginManager,
10
+ }));
11
+ };
12
12
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/index.js"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,OAAO,EAAE,OAAO,IAAI,cAAc,EAAE,MAAM,oBAAoB,CAAA;AAC9D,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAA;AAE5C,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAC7C,kBAAkB,EAClB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinePlotRenderer/index.ts"],"names":[],"mappings":"AACA,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,oBAAoB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AAEjD,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,gBAAgB,CAAC;QACnB,IAAI,EAAE,kBAAkB;QACxB,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -1,10 +1,14 @@
1
1
  /// <reference types="react" />
2
- export default function SetColorDialog({ model, handleClose, }: {
2
+ declare function SetColorDialog({ model, handleClose, }: {
3
3
  model: {
4
- color: number;
4
+ color?: string;
5
+ posColor?: string;
6
+ negColor?: string;
5
7
  setColor: (arg?: string) => void;
6
8
  setPosColor: (arg?: string) => void;
7
9
  setNegColor: (arg?: string) => void;
8
10
  };
9
11
  handleClose: () => void;
10
12
  }): JSX.Element;
13
+ declare const _default: typeof SetColorDialog;
14
+ export default _default;
@@ -1,8 +1,9 @@
1
1
  import React, { useState } from 'react';
2
+ import { observer } from 'mobx-react';
2
3
  import { Button, Dialog, DialogContent, DialogActions, DialogTitle, FormControlLabel, IconButton, Radio, Typography, } from '@mui/material';
3
4
  import { makeStyles } from 'tss-react/mui';
4
5
  import CloseIcon from '@mui/icons-material/Close';
5
- import { CompactPicker } from 'react-color';
6
+ import { ColorPicker } from '@jbrowse/core/ui/ColorPicker';
6
7
  const useStyles = makeStyles()(theme => ({
7
8
  closeButton: {
8
9
  position: 'absolute',
@@ -11,16 +12,7 @@ const useStyles = makeStyles()(theme => ({
11
12
  color: theme.palette.grey[500],
12
13
  },
13
14
  }));
14
- // this is needed because passing a entire color object into the react-color
15
- // for alpha, can't pass in an rgba string for example
16
- function serialize(color) {
17
- if (color instanceof Object) {
18
- const { r, g, b } = color;
19
- return `rgb(${r},${g},${b})`;
20
- }
21
- return color;
22
- }
23
- export default function SetColorDialog({ model, handleClose, }) {
15
+ function SetColorDialog({ model, handleClose, }) {
24
16
  const { classes } = useStyles();
25
17
  const [posneg, setPosNeg] = useState(false);
26
18
  return (React.createElement(Dialog, { open: true, onClose: handleClose },
@@ -33,17 +25,17 @@ export default function SetColorDialog({ model, handleClose, }) {
33
25
  React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: 'Positive/negative color' }),
34
26
  posneg ? (React.createElement(React.Fragment, null,
35
27
  React.createElement(Typography, null, "Positive color"),
36
- React.createElement(CompactPicker, { onChange: event => {
37
- model.setPosColor(serialize(event.rgb));
28
+ React.createElement(ColorPicker, { color: model.posColor || 'black', onChange: event => {
29
+ model.setPosColor(event);
38
30
  model.setColor(undefined);
39
31
  } }),
40
32
  React.createElement(Typography, null, "Negative color"),
41
- React.createElement(CompactPicker, { onChange: event => {
42
- model.setNegColor(serialize(event.rgb));
33
+ React.createElement(ColorPicker, { color: model.negColor || 'black', onChange: event => {
34
+ model.setNegColor(event);
43
35
  model.setColor(undefined);
44
36
  } }))) : (React.createElement(React.Fragment, null,
45
37
  React.createElement(Typography, null, "Overall color"),
46
- React.createElement(CompactPicker, { onChange: event => model.setColor(serialize(event.rgb)) })))),
38
+ React.createElement(ColorPicker, { color: model.color || 'black', onChange: event => model.setColor(event) })))),
47
39
  React.createElement(DialogActions, null,
48
40
  React.createElement(Button, { onClick: () => {
49
41
  model.setPosColor(undefined);
@@ -52,4 +44,5 @@ export default function SetColorDialog({ model, handleClose, }) {
52
44
  }, color: "secondary", variant: "contained" }, "Restore default"),
53
45
  React.createElement(Button, { variant: "contained", color: "primary", type: "submit", onClick: () => handleClose() }, "Submit"))));
54
46
  }
47
+ export default observer(SetColorDialog);
55
48
  //# sourceMappingURL=SetColorDialog.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"SetColorDialog.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/SetColorDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAA;AAE5D,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,4EAA4E;AAC5E,sDAAsD;AACtD,SAAS,SAAS,CAAC,KAAY;IAC7B,IAAI,KAAK,YAAY,MAAM,EAAE;QAC3B,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,KAAiB,CAAA;QACrC,OAAO,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAA;KAC7B;IACD,OAAO,KAAK,CAAA;AACd,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EACrC,KAAK,EACL,WAAW,GASZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAE3C,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC/B,oBAAC,WAAW;;YAGV,oBAAC,UAAU,kBACE,OAAO,EAClB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,WAAW;gBAEpB,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,gBAAgB,IACf,OAAO,EAAE,CAAC,MAAM,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EAC/B,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAE,eAAe,GACtB;YACF,oBAAC,gBAAgB,IACf,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,EAC9B,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAE,yBAAyB,GAChC;YAED,MAAM,CAAC,CAAC,CAAC,CACR;gBACE,oBAAC,UAAU,yBAA4B;gBACvC,oBAAC,aAAa,IACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;wBACvC,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBAC3B,CAAC,GACD;gBACF,oBAAC,UAAU,yBAA4B;gBAEvC,oBAAC,aAAa,IACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;wBACvC,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBAC3B,CAAC,GACD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,UAAU,wBAA2B;gBACtC,oBAAC,aAAa,IACZ,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GACvD,CACD,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;oBAC5B,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;oBAC5B,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;gBAC3B,CAAC,EACD,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,sBAGZ;YAET,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACT,CACV,CAAA;AACH,CAAC"}
1
+ {"version":3,"file":"SetColorDialog.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/SetColorDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,WAAW,EAAE,MAAM,8BAA8B,CAAA;AAE1D,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAWZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAE3C,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC/B,oBAAC,WAAW;;YAGV,oBAAC,UAAU,kBACE,OAAO,EAClB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,WAAW;gBAEpB,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,gBAAgB,IACf,OAAO,EAAE,CAAC,MAAM,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EAC/B,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAE,eAAe,GACtB;YACF,oBAAC,gBAAgB,IACf,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,EAC9B,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAE,yBAAyB,GAChC;YAED,MAAM,CAAC,CAAC,CAAC,CACR;gBACE,oBAAC,UAAU,yBAA4B;gBACvC,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,CAAC,QAAQ,IAAI,OAAO,EAChC,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;wBACxB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBAC3B,CAAC,GACD;gBACF,oBAAC,UAAU,yBAA4B;gBAEvC,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,CAAC,QAAQ,IAAI,OAAO,EAChC,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;wBACxB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBAC3B,CAAC,GACD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,UAAU,wBAA2B;gBACtC,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,CAAC,KAAK,IAAI,OAAO,EAC7B,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,GACxC,CACD,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;oBAC5B,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;oBAC5B,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;gBAC3B,CAAC,EACD,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,sBAGZ;YAET,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}
@@ -1,16 +1,10 @@
1
1
  import React from 'react';
2
- import { Feature } from '@jbrowse/core/util/simpleFeature';
2
+ import { Feature } from '@jbrowse/core/util';
3
+ import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
4
+ declare const TooltipContents: React.ForwardRefExoticComponent<{
5
+ feature: Feature;
6
+ } & React.RefAttributes<HTMLDivElement>>;
3
7
  declare type Coord = [number, number];
4
- declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, }: {
5
- model: {
6
- featureUnderMouse: Feature;
7
- };
8
- height: number;
9
- clientMouseCoord: Coord;
10
- offsetMouseCoord: Coord;
11
- clientRect?: DOMRect | undefined;
12
- TooltipContents: React.FC<any>;
13
- }) => JSX.Element | null;
14
8
  declare const WiggleTooltip: (props: {
15
9
  model: {
16
10
  featureUnderMouse: Feature;
@@ -19,6 +13,7 @@ declare const WiggleTooltip: (props: {
19
13
  offsetMouseCoord: Coord;
20
14
  clientMouseCoord: Coord;
21
15
  clientRect?: DOMRect;
16
+ TooltipContents?: TooltipContentsComponent;
22
17
  }) => JSX.Element;
23
18
  export default WiggleTooltip;
24
19
  export { Tooltip };
@@ -1,45 +1,9 @@
1
- import React, { useMemo, useState } from 'react';
1
+ import React from 'react';
2
2
  import { observer } from 'mobx-react';
3
- import { alpha, Portal } from '@mui/material';
4
- import { makeStyles } from 'tss-react/mui';
5
3
  // locals
6
- import { YSCALEBAR_LABEL_OFFSET } from '../models/model';
7
- import { usePopper } from 'react-popper';
8
- // convert to number, apply shortened precision, and render
9
- function toP(s = 0) {
10
- return +(+s).toPrecision(6);
11
- }
12
- function round(value) {
13
- return Math.round(value * 1e5) / 1e5;
14
- }
4
+ import Tooltip from '../../Tooltip';
5
+ import { toP } from '../../util';
15
6
  const en = (n) => n.toLocaleString('en-US');
16
- const useStyles = makeStyles()(theme => ({
17
- // these styles come from
18
- // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
19
- tooltip: {
20
- position: 'absolute',
21
- pointerEvents: 'none',
22
- backgroundColor: alpha(theme.palette.grey[700], 0.9),
23
- borderRadius: theme.shape.borderRadius,
24
- color: theme.palette.common.white,
25
- fontFamily: theme.typography.fontFamily,
26
- padding: '4px 8px',
27
- fontSize: theme.typography.pxToRem(12),
28
- lineHeight: `${round(14 / 10)}em`,
29
- maxWidth: 300,
30
- wordWrap: 'break-word',
31
- },
32
- hoverVertical: {
33
- background: '#333',
34
- border: 'none',
35
- width: 1,
36
- height: '100%',
37
- top: YSCALEBAR_LABEL_OFFSET,
38
- cursor: 'default',
39
- position: 'absolute',
40
- pointerEvents: 'none',
41
- },
42
- }));
43
7
  const TooltipContents = React.forwardRef(({ feature }, ref) => {
44
8
  const start = feature.get('start');
45
9
  const end = feature.get('end');
@@ -62,43 +26,6 @@ const TooltipContents = React.forwardRef(({ feature }, ref) => {
62
26
  React.createElement("br", null),
63
27
  `${toP(feature.get('score'))}`));
64
28
  });
65
- const Tooltip = observer(({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, }) => {
66
- const { featureUnderMouse } = model;
67
- const [width, setWidth] = useState(0);
68
- const [anchorEl, setAnchorEl] = useState(null);
69
- const { classes } = useStyles();
70
- // must be memoized a la https://github.com/popperjs/react-popper/issues/391
71
- const virtElement = useMemo(() => ({
72
- getBoundingClientRect: () => {
73
- const x = clientMouseCoord[0] + width / 2 + 20;
74
- const y = (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
75
- return {
76
- top: y,
77
- left: x,
78
- bottom: y,
79
- right: x,
80
- width: 0,
81
- height: 0,
82
- x,
83
- y,
84
- toJSON() { },
85
- };
86
- },
87
- }), [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width]);
88
- const { styles, attributes } = usePopper(virtElement, anchorEl);
89
- return featureUnderMouse ? (React.createElement(React.Fragment, null,
90
- React.createElement(Portal, null,
91
- React.createElement("div", { ref: setAnchorEl, className: classes.tooltip,
92
- // zIndex needed to go over widget drawer
93
- style: { ...styles.popper, zIndex: 100000 }, ...attributes.popper },
94
- React.createElement(TooltipContents, { ref: (elt) => {
95
- setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
96
- }, feature: featureUnderMouse }))),
97
- React.createElement("div", { className: classes.hoverVertical, style: {
98
- left: offsetMouseCoord[0],
99
- height: height - YSCALEBAR_LABEL_OFFSET * 2,
100
- } }))) : null;
101
- });
102
29
  const WiggleTooltip = observer((props) => {
103
30
  return React.createElement(Tooltip, { TooltipContents: TooltipContents, ...props });
104
31
  });
@@ -1 +1 @@
1
- {"version":3,"file":"Tooltip.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/Tooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAG1C,SAAS;AACT,OAAO,EAAE,sBAAsB,EAAE,MAAM,iBAAiB,CAAA;AACxD,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAA;AAExC,2DAA2D;AAC3D,SAAS,GAAG,CAAC,CAAC,GAAG,CAAC;IAChB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAED,SAAS,KAAK,CAAC,KAAa;IAC1B,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC;AAED,MAAM,EAAE,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,cAAc,CAAC,OAAO,CAAC,CAAA;AAEnD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,yBAAyB;IACzB,iGAAiG;IACjG,OAAO,EAAE;QACP,QAAQ,EAAE,UAAU;QACpB,aAAa,EAAE,MAAM;QACrB,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC;QACpD,YAAY,EAAE,KAAK,CAAC,KAAK,CAAC,YAAY;QACtC,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;QACjC,UAAU,EAAE,KAAK,CAAC,UAAU,CAAC,UAAU;QACvC,OAAO,EAAE,SAAS;QAClB,QAAQ,EAAE,KAAK,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACtC,UAAU,EAAE,GAAG,KAAK,CAAC,EAAE,GAAG,EAAE,CAAC,IAAI;QACjC,QAAQ,EAAE,GAAG;QACb,QAAQ,EAAE,YAAY;KACvB;IAED,aAAa,EAAE;QACb,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,MAAM;QACd,GAAG,EAAE,sBAAsB;QAC3B,MAAM,EAAE,SAAS;QACjB,QAAQ,EAAE,UAAU;QACpB,aAAa,EAAE,MAAM;KACtB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,KAAK,CAAC,UAAU,CACtC,CAAC,EAAE,OAAO,EAAwB,EAAE,GAAG,EAAE,EAAE;IACzC,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IAClC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC9B,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;IACnC,MAAM,GAAG,GAAG,CAAC,IAAI,EAAE,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;SACvE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;SAChB,IAAI,CAAC,GAAG,CAAC,CAAA;IAEZ,OAAO,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,KAAK,SAAS,CAAC,CAAC,CAAC,CAC5C,6BAAK,GAAG,EAAE,GAAG;QACV,GAAG;QACJ,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;QAClC,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC/B,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAC9B,CACP,CAAC,CAAC,CAAC,CACF,6BAAK,GAAG,EAAE,GAAG;QACV,GAAG;QACJ,+BAAM;QACL,GAAG,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,EAAE,CAC3B,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAID,MAAM,OAAO,GAAG,QAAQ,CACtB,CAAC,EACC,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,gBAAgB,EAChB,UAAU,EACV,eAAe,GAUhB,EAAE,EAAE;IACH,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IACnC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAwB,IAAI,CAAC,CAAA;IACrE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,4EAA4E;IAC5E,MAAM,WAAW,GAAG,OAAO,CACzB,GAAG,EAAE,CAAC,CAAC;QACL,qBAAqB,EAAE,GAAG,EAAE;YAC1B,MAAM,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,GAAG,EAAE,CAAA;YAC9C,MAAM,CAAC,GAAG,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,GAAG,KAAI,CAAC,CAAA;YAC9B,OAAO;gBACL,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,MAAM,EAAE,CAAC;gBACT,KAAK,EAAE,CAAC;gBACR,KAAK,EAAE,CAAC;gBACR,MAAM,EAAE,CAAC;gBACT,CAAC;gBACD,CAAC;gBACD,MAAM,KAAI,CAAC;aACZ,CAAA;QACH,CAAC;KACF,CAAC,EACF,CAAC,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,GAAG,EAAE,gBAAgB,EAAE,KAAK,CAAC,CAC3C,CAAA;IACD,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,GAAG,SAAS,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAA;IAE/D,OAAO,iBAAiB,CAAC,CAAC,CAAC,CACzB;QACE,oBAAC,MAAM;YACL,6BACE,GAAG,EAAE,WAAW,EAChB,SAAS,EAAE,OAAO,CAAC,OAAO;gBAC1B,yCAAyC;gBACzC,KAAK,EAAE,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KACvC,UAAU,CAAC,MAAM;gBAErB,oBAAC,eAAe,IACd,GAAG,EAAE,CAAC,GAAmB,EAAE,EAAE;wBAC3B,QAAQ,CAAC,CAAA,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,qBAAqB,GAAG,KAAK,KAAI,CAAC,CAAC,CAAA;oBACnD,CAAC,EACD,OAAO,EAAE,iBAAiB,GAC1B,CACE,CACC;QAET,6BACE,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,KAAK,EAAE;gBACL,IAAI,EAAE,gBAAgB,CAAC,CAAC,CAAC;gBACzB,MAAM,EAAE,MAAM,GAAG,sBAAsB,GAAG,CAAC;aAC5C,GACD,CACD,CACJ,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,MAAM,aAAa,GAAG,QAAQ,CAC5B,CAAC,KAMA,EAAE,EAAE;IACH,OAAO,oBAAC,OAAO,IAAC,eAAe,EAAE,eAAe,KAAM,KAAK,GAAI,CAAA;AACjE,CAAC,CACF,CAAA;AACD,eAAe,aAAa,CAAA;AAC5B,OAAO,EAAE,OAAO,EAAE,CAAA"}
1
+ {"version":3,"file":"Tooltip.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/Tooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,SAAS;AACT,OAAO,OAAqC,MAAM,eAAe,CAAA;AACjE,OAAO,EAAE,GAAG,EAAE,MAAM,YAAY,CAAA;AAEhC,MAAM,EAAE,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,cAAc,CAAC,OAAO,CAAC,CAAA;AAEnD,MAAM,eAAe,GAAG,KAAK,CAAC,UAAU,CACtC,CAAC,EAAE,OAAO,EAAE,EAAE,GAAG,EAAE,EAAE;IACnB,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IAClC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC9B,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;IACnC,MAAM,GAAG,GAAG,CAAC,IAAI,EAAE,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;SACvE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;SAChB,IAAI,CAAC,GAAG,CAAC,CAAA;IAEZ,OAAO,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,KAAK,SAAS,CAAC,CAAC,CAAC,CAC5C,6BAAK,GAAG,EAAE,GAAG;QACV,GAAG;QACJ,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;QAClC,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC/B,+BAAM;;QACA,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAC9B,CACP,CAAC,CAAC,CAAC,CACF,6BAAK,GAAG,EAAE,GAAG;QACV,GAAG;QACJ,+BAAM;QACL,GAAG,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,EAAE,CAC3B,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAID,MAAM,aAAa,GAAG,QAAQ,CAC5B,CAAC,KAOA,EAAE,EAAE;IACH,OAAO,oBAAC,OAAO,IAAC,eAAe,EAAE,eAAe,KAAM,KAAK,GAAI,CAAA;AACjE,CAAC,CACF,CAAA;AACD,eAAe,aAAa,CAAA;AAC5B,OAAO,EAAE,OAAO,EAAE,CAAA"}
@@ -1,3 +1,7 @@
1
- export { default as configSchemaFactory } from './models/configSchema';
2
- export { default as modelFactory, YSCALEBAR_LABEL_OFFSET } from './models/model';
3
- export { default as ReactComponent } from './components/WiggleDisplayComponent';
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ import modelFactory from './models/model';
3
+ import ReactComponent from './components/WiggleDisplayComponent';
4
+ import Tooltip from './components/Tooltip';
5
+ declare const _default: (pluginManager: PluginManager) => void;
6
+ export default _default;
7
+ export { ReactComponent, modelFactory, Tooltip };
@@ -1,4 +1,21 @@
1
- export { default as configSchemaFactory } from './models/configSchema';
2
- export { default as modelFactory, YSCALEBAR_LABEL_OFFSET } from './models/model';
3
- export { default as ReactComponent } from './components/WiggleDisplayComponent';
1
+ import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
2
+ import configSchemaFactory from './models/configSchema';
3
+ import modelFactory from './models/model';
4
+ import ReactComponent from './components/WiggleDisplayComponent';
5
+ import Tooltip from './components/Tooltip';
6
+ export default (pluginManager) => {
7
+ pluginManager.addDisplayType(() => {
8
+ const configSchema = configSchemaFactory(pluginManager);
9
+ const stateModel = modelFactory(pluginManager, configSchema);
10
+ return new DisplayType({
11
+ name: 'LinearWiggleDisplay',
12
+ configSchema,
13
+ stateModel,
14
+ trackType: 'QuantitativeTrack',
15
+ viewType: 'LinearGenomeView',
16
+ ReactComponent,
17
+ });
18
+ });
19
+ };
20
+ export { ReactComponent, modelFactory, Tooltip };
4
21
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,uBAAuB,CAAA;AACtE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,sBAAsB,EAAE,MAAM,gBAAgB,CAAA;AAChF,OAAO,EAAE,OAAO,IAAI,cAAc,EAAE,MAAM,qCAAqC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,qCAAqC,CAAA;AAChE,OAAO,OAAO,MAAM,sBAAsB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,YAAY,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA"}
@@ -3,7 +3,6 @@ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
3
  import { Instance } from 'mobx-state-tree';
4
4
  import PluginManager from '@jbrowse/core/PluginManager';
5
5
  import { Feature } from '@jbrowse/core/util/simpleFeature';
6
- export declare const YSCALEBAR_LABEL_OFFSET = 5;
7
6
  declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
8
7
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
9
8
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -64,6 +63,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
64
63
  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
65
64
  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
66
65
  fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
66
+ minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
67
67
  color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
68
68
  posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
69
69
  negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -209,7 +209,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
209
209
  };
210
210
  statsFetchInProgress: AbortController | undefined;
211
211
  } & {
212
- updateStats({ scoreMin, scoreMax, }: {
212
+ updateStats(stats: {
213
213
  scoreMin: number;
214
214
  scoreMax: number;
215
215
  }): void;
@@ -219,7 +219,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
219
219
  setLoading(aborter: AbortController): void;
220
220
  selectFeature(feature: Feature): void;
221
221
  setResolution(res: number): void;
222
- setFill(fill: boolean): void;
222
+ setFill(fill: number): void;
223
223
  toggleLogScale(): void;
224
224
  setScaleType(scale?: string): void;
225
225
  setSummaryScoreMode(val: string): void;
@@ -232,6 +232,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
232
232
  } & {
233
233
  readonly TooltipComponent: React.FC<{}>;
234
234
  readonly adapterTypeName: any;
235
+ readonly rendererTypeNameSimple: any;
235
236
  readonly rendererTypeName: string;
236
237
  readonly filters: undefined;
237
238
  readonly scaleType: any;
@@ -258,18 +259,36 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
258
259
  readonly autoscaleType: any;
259
260
  readonly displayCrossHatchesSetting: any;
260
261
  } & {
261
- readonly ticks: any;
262
+ readonly ticks: {
263
+ range: number[];
264
+ values: number[];
265
+ format: (d: import("d3-scale").NumberValue) => string;
266
+ position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
267
+ };
268
+ readonly adapterCapabilities: string[];
262
269
  } & {
263
270
  renderProps(): any;
264
- readonly adapterCapabilities: string[];
265
271
  readonly hasResolution: boolean;
266
272
  readonly hasGlobalStats: boolean;
273
+ readonly fillSetting: 2 | 1 | 0;
267
274
  } & {
268
275
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
276
+ label: string;
277
+ subMenu: {
278
+ label: string;
279
+ type: string;
280
+ checked: boolean;
281
+ onClick: () => void;
282
+ }[];
283
+ type?: undefined;
284
+ checked?: undefined;
285
+ onClick?: undefined;
286
+ } | {
269
287
  type: string;
270
288
  label: string;
271
289
  checked: any;
272
290
  onClick: () => void;
291
+ subMenu?: undefined;
273
292
  })[];
274
293
  } & {
275
294
  reload(): Promise<void>;