@jbrowse/plugin-wiggle 2.0.1 → 2.1.0

package/dist/index.d.ts

@@ -4,11 +4,12 @@ import PluginManager from '@jbrowse/core/PluginManager';
 import WiggleBaseRenderer from './WiggleBaseRenderer';
 import WiggleRendering from './WiggleRendering';
 import * as utils from './util';
-import { modelFactory as linearWiggleDisplayModelFactory, ReactComponent as LinearWiggleDisplayReactComponent, YSCALEBAR_LABEL_OFFSET } from './LinearWiggleDisplay';
-import XYPlotRenderer from './XYPlotRenderer';
+import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, Tooltip } from './LinearWiggleDisplay';
+import { TooltipContentsComponent } from './Tooltip';
+import { XYPlotRenderer } from './XYPlotRenderer';
 export default class WigglePlugin extends Plugin {
     name: string;
-    install(pluginManager: PluginManager): void;
+    install(pm: PluginManager): void;
     exports: {
         LinearWiggleDisplayReactComponent: (props: {
             model: {
@@ -113,6 +114,7 @@ export default class WigglePlugin extends Plugin {
                 selectedRendering: string;
                 resolution: number;
                 fill: boolean | undefined;
+                minSize: number | undefined;
                 color: string | undefined;
                 posColor: string | undefined;
                 negColor: string | undefined;
@@ -261,7 +263,7 @@ export default class WigglePlugin extends Plugin {
                 };
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats({ scoreMin, scoreMax, }: {
+                updateStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -271,7 +273,7 @@ export default class WigglePlugin extends Plugin {
                 setLoading(aborter: AbortController): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 setResolution(res: number): void;
-                setFill(fill: boolean): void;
+                setFill(fill: number): void;
                 toggleLogScale(): void;
                 setScaleType(scale?: string | undefined): void;
                 setSummaryScoreMode(val: string): void;
@@ -284,6 +286,7 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly TooltipComponent: import("react").FC<{}>;
                 readonly adapterTypeName: any;
+                readonly rendererTypeNameSimple: any;
                 readonly rendererTypeName: string;
                 readonly filters: undefined;
                 readonly scaleType: any;
@@ -310,18 +313,36 @@ export default class WigglePlugin extends Plugin {
                 readonly autoscaleType: any;
                 readonly displayCrossHatchesSetting: any;
             } & {
-                readonly ticks: any;
+                readonly ticks: {
+                    range: number[];
+                    values: number[];
+                    format: (d: import("d3-scale").NumberValue) => string;
+                    position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                };
+                readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
-                readonly adapterCapabilities: string[];
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
+                readonly fillSetting: 2 | 1 | 0;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                    label: string;
+                    subMenu: {
+                        label: string;
+                        type: string;
+                        checked: boolean;
+                        onClick: () => void;
+                    }[];
+                    type?: undefined;
+                    checked?: undefined;
+                    onClick?: undefined;
+                } | {
                     type: string;
                     label: string;
                     checked: any;
                     onClick: () => void;
+                    subMenu?: undefined;
                 })[];
             } & {
                 reload(): Promise<void>;
@@ -389,6 +410,7 @@ export default class WigglePlugin extends Plugin {
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
                 fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+                minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
                 posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
                 negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -534,7 +556,7 @@ export default class WigglePlugin extends Plugin {
                 };
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats({ scoreMin, scoreMax, }: {
+                updateStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -544,7 +566,7 @@ export default class WigglePlugin extends Plugin {
                 setLoading(aborter: AbortController): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 setResolution(res: number): void;
-                setFill(fill: boolean): void;
+                setFill(fill: number): void;
                 toggleLogScale(): void;
                 setScaleType(scale?: string | undefined): void;
                 setSummaryScoreMode(val: string): void;
@@ -557,6 +579,7 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly TooltipComponent: import("react").FC<{}>;
                 readonly adapterTypeName: any;
+                readonly rendererTypeNameSimple: any;
                 readonly rendererTypeName: string;
                 readonly filters: undefined;
                 readonly scaleType: any;
@@ -583,18 +606,36 @@ export default class WigglePlugin extends Plugin {
                 readonly autoscaleType: any;
                 readonly displayCrossHatchesSetting: any;
             } & {
-                readonly ticks: any;
+                readonly ticks: {
+                    range: number[];
+                    values: number[];
+                    format: (d: import("d3-scale").NumberValue) => string;
+                    position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                };
+                readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
-                readonly adapterCapabilities: string[];
                 readonly hasResolution: boolean;
                 readonly hasGlobalStats: boolean;
+                readonly fillSetting: 2 | 1 | 0;
             } & {
                 trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                    label: string;
+                    subMenu: {
+                        label: string;
+                        type: string;
+                        checked: boolean;
+                        onClick: () => void;
+                    }[];
+                    type?: undefined;
+                    checked?: undefined;
+                    onClick?: undefined;
+                } | {
                     type: string;
                     label: string;
                     checked: any;
                     onClick: () => void;
+                    subMenu?: undefined;
                 })[];
             } & {
                 reload(): Promise<void>;
@@ -623,9 +664,9 @@ export default class WigglePlugin extends Plugin {
             blockKey: string;
         }) => JSX.Element;
         XYPlotRenderer: typeof XYPlotRenderer;
+        WiggleBaseRenderer: typeof WiggleBaseRenderer;
         xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         utils: typeof utils;
-        WiggleBaseRenderer: typeof WiggleBaseRenderer;
         linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -686,6 +727,7 @@ export default class WigglePlugin extends Plugin {
             selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
             fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+            minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
             color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -831,7 +873,7 @@ export default class WigglePlugin extends Plugin {
             };
             statsFetchInProgress: AbortController | undefined;
         } & {
-            updateStats({ scoreMin, scoreMax, }: {
+            updateStats(stats: {
                 scoreMin: number;
                 scoreMax: number;
             }): void;
@@ -841,7 +883,7 @@ export default class WigglePlugin extends Plugin {
             setLoading(aborter: AbortController): void;
             selectFeature(feature: import("@jbrowse/core/util").Feature): void;
             setResolution(res: number): void;
-            setFill(fill: boolean): void;
+            setFill(fill: number): void;
             toggleLogScale(): void;
             setScaleType(scale?: string | undefined): void;
             setSummaryScoreMode(val: string): void;
@@ -854,6 +896,7 @@ export default class WigglePlugin extends Plugin {
         } & {
             readonly TooltipComponent: import("react").FC<{}>;
             readonly adapterTypeName: any;
+            readonly rendererTypeNameSimple: any;
             readonly rendererTypeName: string;
             readonly filters: undefined;
             readonly scaleType: any;
@@ -880,18 +923,36 @@ export default class WigglePlugin extends Plugin {
             readonly autoscaleType: any;
             readonly displayCrossHatchesSetting: any;
         } & {
-            readonly ticks: any;
+            readonly ticks: {
+                range: number[];
+                values: number[];
+                format: (d: import("d3-scale").NumberValue) => string;
+                position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+            };
+            readonly adapterCapabilities: string[];
         } & {
             renderProps(): any;
-            readonly adapterCapabilities: string[];
             readonly hasResolution: boolean;
             readonly hasGlobalStats: boolean;
+            readonly fillSetting: 2 | 1 | 0;
         } & {
             trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                label: string;
+                subMenu: {
+                    label: string;
+                    type: string;
+                    checked: boolean;
+                    onClick: () => void;
+                }[];
+                type?: undefined;
+                checked?: undefined;
+                onClick?: undefined;
+            } | {
                 type: string;
                 label: string;
                 checked: any;
                 onClick: () => void;
+                subMenu?: undefined;
             })[];
         } & {
             reload(): Promise<void>;
@@ -910,8 +971,5 @@ export default class WigglePlugin extends Plugin {
     };
 }
 export * from './util';
-export { WiggleRendering };
-export { WiggleBaseRenderer };
-export { LinearWiggleDisplayReactComponent, linearWiggleDisplayModelFactory };
-export { Tooltip } from './LinearWiggleDisplay/components/Tooltip';
-export { YSCALEBAR_LABEL_OFFSET };
+export { LinearWiggleDisplayReactComponent, Tooltip, WiggleRendering, WiggleBaseRenderer, linearWiggleDisplayModelFactory, };
+export type { TooltipContentsComponent };

package/dist/index.js

@@ -44,80 +44,72 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.YSCALEBAR_LABEL_OFFSET = exports.Tooltip = exports.linearWiggleDisplayModelFactory = exports.LinearWiggleDisplayReactComponent = exports.WiggleBaseRenderer = exports.WiggleRendering = void 0;
-var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
-var TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
+exports.linearWiggleDisplayModelFactory = exports.WiggleBaseRenderer = exports.WiggleRendering = exports.Tooltip = exports.LinearWiggleDisplayReactComponent = void 0;
 var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
-var configuration_1 = require("@jbrowse/core/configuration");
-var models_1 = require("@jbrowse/core/pluggableElementTypes/models");
-var DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
+var tracks_1 = require("@jbrowse/core/util/tracks");
+// locals
 var WiggleBaseRenderer_1 = __importDefault(require("./WiggleBaseRenderer"));
 exports.WiggleBaseRenderer = WiggleBaseRenderer_1.default;
 var WiggleRendering_1 = __importDefault(require("./WiggleRendering"));
 exports.WiggleRendering = WiggleRendering_1.default;
-var BigWigAdapter_1 = require("./BigWigAdapter");
-var DensityRenderer_1 = __importStar(require("./DensityRenderer"));
+var BigWigAdapter_1 = __importDefault(require("./BigWigAdapter"));
+var QuantitativeTrack_1 = __importDefault(require("./QuantitativeTrack"));
+var MultiQuantitativeTrack_1 = __importDefault(require("./MultiQuantitativeTrack"));
+var MultiWiggleAdapter_1 = __importDefault(require("./MultiWiggleAdapter"));
+var DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
+var XYPlotRenderer_1 = __importDefault(require("./XYPlotRenderer"));
+var LinePlotRenderer_1 = __importDefault(require("./LinePlotRenderer"));
+var LinearWiggleDisplay_1 = __importDefault(require("./LinearWiggleDisplay"));
+var MultiLinearWiggleDisplay_1 = __importDefault(require("./MultiLinearWiggleDisplay"));
+var MultiXYPlotRenderer_1 = __importDefault(require("./MultiXYPlotRenderer"));
+var MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
+var MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
+var MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
+var MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
+var CreateMultiWiggleExtension_1 = __importDefault(require("./CreateMultiWiggleExtension"));
+var MultiWiggleAddTrackWidget_1 = __importDefault(require("./MultiWiggleAddTrackWidget"));
 var utils = __importStar(require("./util"));
-var LinearWiggleDisplay_1 = require("./LinearWiggleDisplay");
-Object.defineProperty(exports, "linearWiggleDisplayModelFactory", { enumerable: true, get: function () { return LinearWiggleDisplay_1.modelFactory; } });
-Object.defineProperty(exports, "LinearWiggleDisplayReactComponent", { enumerable: true, get: function () { return LinearWiggleDisplay_1.ReactComponent; } });
-Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", { enumerable: true, get: function () { return LinearWiggleDisplay_1.YSCALEBAR_LABEL_OFFSET; } });
-var XYPlotRenderer_1 = __importStar(require("./XYPlotRenderer"));
-var LinePlotRenderer_1 = __importStar(require("./LinePlotRenderer"));
 var rpcMethods_1 = require("./WiggleRPC/rpcMethods");
-var tracks_1 = require("@jbrowse/core/util/tracks");
+var LinearWiggleDisplay_2 = require("./LinearWiggleDisplay");
+Object.defineProperty(exports, "LinearWiggleDisplayReactComponent", { enumerable: true, get: function () { return LinearWiggleDisplay_2.ReactComponent; } });
+Object.defineProperty(exports, "linearWiggleDisplayModelFactory", { enumerable: true, get: function () { return LinearWiggleDisplay_2.modelFactory; } });
+Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return LinearWiggleDisplay_2.Tooltip; } });
+var XYPlotRenderer_2 = require("./XYPlotRenderer");
 var WigglePlugin = /** @class */ (function (_super) {
     __extends(WigglePlugin, _super);
     function WigglePlugin() {
         var _this = _super !== null && _super.apply(this, arguments) || this;
         _this.name = 'WigglePlugin';
         _this.exports = {
-            LinearWiggleDisplayReactComponent: LinearWiggleDisplay_1.ReactComponent,
-            XYPlotRendererReactComponent: XYPlotRenderer_1.ReactComponent,
-            XYPlotRenderer: XYPlotRenderer_1.default,
-            xyPlotRendererConfigSchema: XYPlotRenderer_1.configSchema,
-            utils: utils,
+            LinearWiggleDisplayReactComponent: LinearWiggleDisplay_2.ReactComponent,
+            XYPlotRendererReactComponent: XYPlotRenderer_2.ReactComponent,
+            XYPlotRenderer: XYPlotRenderer_2.XYPlotRenderer,
             WiggleBaseRenderer: WiggleBaseRenderer_1.default,
-            linearWiggleDisplayModelFactory: LinearWiggleDisplay_1.modelFactory,
+            xyPlotRendererConfigSchema: XYPlotRenderer_2.configSchema,
+            utils: utils,
+            linearWiggleDisplayModelFactory: LinearWiggleDisplay_2.modelFactory,
         };
         return _this;
     }
-    WigglePlugin.prototype.install = function (pluginManager) {
-        pluginManager.addTrackType(function () {
-            var configSchema = (0, configuration_1.ConfigurationSchema)('QuantitativeTrack', {}, { baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager) });
-            return new TrackType_1.default({
-                name: 'QuantitativeTrack',
-                configSchema: configSchema,
-                stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'QuantitativeTrack', configSchema),
-            });
-        });
-        pluginManager.addDisplayType(function () {
-            var configSchema = (0, LinearWiggleDisplay_1.configSchemaFactory)(pluginManager);
-            return new DisplayType_1.default({
-                name: 'LinearWiggleDisplay',
-                configSchema: configSchema,
-                stateModel: (0, LinearWiggleDisplay_1.modelFactory)(pluginManager, configSchema),
-                trackType: 'QuantitativeTrack',
-                viewType: 'LinearGenomeView',
-                ReactComponent: LinearWiggleDisplay_1.ReactComponent,
-            });
-        });
-        pluginManager.addAdapterType(function () {
-            return new AdapterType_1.default({
-                name: 'BigWigAdapter',
-                configSchema: BigWigAdapter_1.configSchema,
-                adapterCapabilities: [
-                    'hasResolution',
-                    'hasLocalStats',
-                    'hasGlobalStats',
-                ],
-                getAdapterClass: function () {
-                    return Promise.resolve().then(function () { return __importStar(require('./BigWigAdapter/BigWigAdapter')); }).then(function (r) { return r.default; });
-                },
-            });
-        });
-        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-            return function (file, index, adapterHint) {
+    WigglePlugin.prototype.install = function (pm) {
+        (0, MultiWiggleAdapter_1.default)(pm);
+        (0, BigWigAdapter_1.default)(pm);
+        (0, QuantitativeTrack_1.default)(pm);
+        (0, MultiQuantitativeTrack_1.default)(pm);
+        (0, LinearWiggleDisplay_1.default)(pm);
+        (0, MultiLinearWiggleDisplay_1.default)(pm);
+        (0, LinePlotRenderer_1.default)(pm);
+        (0, XYPlotRenderer_1.default)(pm);
+        (0, DensityRenderer_1.default)(pm);
+        (0, MultiXYPlotRenderer_1.default)(pm);
+        (0, MultiRowXYPlotRenderer_1.default)(pm);
+        (0, MultiDensityRenderer_1.default)(pm);
+        (0, MultiLineRenderer_1.default)(pm);
+        (0, MultiRowLineRenderer_1.default)(pm);
+        (0, MultiWiggleAddTrackWidget_1.default)(pm);
+        (0, CreateMultiWiggleExtension_1.default)(pm);
+        pm.addToExtensionPoint('Core-guessAdapterForLocation', function (cb) {
+            return function (file, index, hint) {
                 var regexGuess = /\.(bw|bigwig)$/i;
                 var adapterName = 'BigWigAdapter';
                 var fileName = (0, tracks_1.getFileName)(file);
@@ -125,16 +117,16 @@ var WigglePlugin = /** @class */ (function (_super) {
                     type: adapterName,
                     bigWigLocation: file,
                 };
-                if (regexGuess.test(fileName) && !adapterHint) {
+                if (regexGuess.test(fileName) && !hint) {
                     return obj;
                 }
-                else if (adapterHint === adapterName) {
+                else if (hint === adapterName) {
                     return obj;
                 }
-                return adapterGuesser(file, index, adapterHint);
+                return cb(file, index, hint);
             };
         });
-        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
+        pm.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
             return function (adapterName) {
                 if (adapterName === 'BigWigAdapter') {
                     return 'QuantitativeTrack';
@@ -142,37 +134,12 @@ var WigglePlugin = /** @class */ (function (_super) {
                 return trackTypeGuesser(adapterName);
             };
         });
-        pluginManager.addRendererType(function () {
-            return new DensityRenderer_1.default({
-                name: 'DensityRenderer',
-                ReactComponent: DensityRenderer_1.ReactComponent,
-                configSchema: DensityRenderer_1.configSchema,
-                pluginManager: pluginManager,
-            });
-        });
-        pluginManager.addRendererType(function () {
-            return new LinePlotRenderer_1.default({
-                name: 'LinePlotRenderer',
-                ReactComponent: LinePlotRenderer_1.ReactComponent,
-                configSchema: LinePlotRenderer_1.configSchema,
-                pluginManager: pluginManager,
-            });
-        });
-        pluginManager.addRendererType(function () {
-            return new XYPlotRenderer_1.default({
-                name: 'XYPlotRenderer',
-                ReactComponent: XYPlotRenderer_1.ReactComponent,
-                configSchema: XYPlotRenderer_1.configSchema,
-                pluginManager: pluginManager,
-            });
-        });
-        pluginManager.addRpcMethod(function () { return new rpcMethods_1.WiggleGetGlobalStats(pluginManager); });
-        pluginManager.addRpcMethod(function () { return new rpcMethods_1.WiggleGetMultiRegionStats(pluginManager); });
+        pm.addRpcMethod(function () { return new rpcMethods_1.WiggleGetGlobalStats(pm); });
+        pm.addRpcMethod(function () { return new rpcMethods_1.WiggleGetMultiRegionStats(pm); });
+        pm.addRpcMethod(function () { return new rpcMethods_1.MultiWiggleGetSources(pm); });
     };
     return WigglePlugin;
 }(Plugin_1.default));
 exports.default = WigglePlugin;
 __exportStar(require("./util"), exports);
-var Tooltip_1 = require("./LinearWiggleDisplay/components/Tooltip");
-Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return Tooltip_1.Tooltip; } });
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/util.d.ts

@@ -1,3 +1,6 @@
+import { FeatureStats } from '@jbrowse/core/util/stats';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+export declare const YSCALEBAR_LABEL_OFFSET = 5;
 export interface ScaleOpts {
     domain: number[];
     range: number[];
@@ -5,6 +8,11 @@ export interface ScaleOpts {
     pivotValue?: number;
     inverted: boolean;
 }
+export interface Source {
+    name: string;
+    color?: string;
+    group?: string;
+}
 /**
  * produces a d3-scale from arguments. applies a "nice domain" adjustment
  *
@@ -16,7 +24,7 @@ export interface ScaleOpts {
  *   - pivotValue (number)
  *   - inverted (boolean)
  */
-export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number> | import("d3-scale").ScaleQuantize<number>;
+export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
 /**
  * gets the origin for drawing the graph. for linear this is 0, for log this is arbitrarily set to log(1)==0
  *
@@ -39,3 +47,28 @@ export declare function getNiceDomain({ scaleType, domain, bounds, }: {
     domain: number[];
     bounds: number[];
 }): [number, number];
+export declare function groupBy<T>(array: T[], predicate: (v: T) => string): {
+    [key: string]: T[];
+};
+export declare function getStats(self: {
+    adapterConfig: AnyConfigurationModel;
+    autoscaleType: string;
+    setMessage: (str: string) => void;
+}, opts: {
+    headers?: Record<string, string>;
+    signal?: AbortSignal;
+    filters?: string[];
+}): Promise<FeatureStats>;
+export declare function statsAutorun(self: {
+    estimatedStatsReady: boolean;
+    regionTooLarge: boolean;
+    setLoading: (aborter: AbortController) => void;
+    setError: (error: unknown) => void;
+    updateStats: (stats: FeatureStats, statsRegion: string) => void;
+    renderProps: () => Record<string, unknown>;
+    adapterConfig: AnyConfigurationModel;
+    autoscaleType: string;
+    setMessage: (str: string) => void;
+}): void;
+export declare function toP(s?: number): number;
+export declare function round(value: number): number;