@hongmaple0820/med-scale-research-os 0.43.0

package/dist/dashboard/DashboardServer.js

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+/**
+ * Dashboard Server — Web-based visualization for SCALE Engine state
+ * Part of P2-2: Web Dashboard for real-time monitoring
+ */
+import { Hono } from 'hono';
+import { cors } from 'hono/cors';
+import { serveStatic } from 'hono/bun';
+import { existsSync, readFileSync } from 'node:fs';
+import { extname, join, dirname, resolve } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { readMedicalWorkflowDashboard } from './MedicalWorkflowData.js';
+const __dirname = dirname(fileURLToPath(import.meta.url));
+/**
+ * DashboardServer — Hono-based web server for dashboard
+ */
+export class DashboardServer {
+    constructor(bus, options = {}) {
+        this.store = null;
+        this.fsm = null;
+        this.evaluator = null;
+        this.detectorTracker = null;
+        this.app = new Hono();
+        this.bus = bus;
+        this.store = options.store ?? null;
+        this.fsm = options.fsm ?? null;
+        this.evaluator = options.evaluator ?? null;
+        this.detectorTracker = options.detectorTracker ?? null;
+        this.port = options.port ?? 3000;
+        this.setupRoutes();
+    }
+    setupRoutes() {
+        // CORS for cross-origin requests
+        this.app.use('*', cors());
+        // Static files for frontend
+        this.app.use('/static/*', serveStatic({ root: './src/dashboard/static' }));
+        this.app.use('/static/vendor/element-plus/index.css', serveStatic({ path: './node_modules/element-plus/dist/index.css' }));
+        this.app.use('/static/vendor/element-plus/index.full.min.js', serveStatic({ path: './node_modules/element-plus/dist/index.full.min.js' }));
+        this.app.use('/static/vendor/vue.global.prod.js', serveStatic({ path: './node_modules/vue/dist/vue.global.prod.js' }));
+        // Health check
+        this.app.get('/health', (c) => c.json({ status: 'ok', timestamp: Date.now() }));
+        // Main dashboard state
+        this.app.get('/api/state', async (c) => {
+            const state = await this.getDashboardState();
+            return c.json(state);
+        });
+        // Artifact tree
+        this.app.get('/api/artifacts', async (c) => {
+            const tree = await this.getArtifactTree();
+            return c.json(tree);
+        });
+        // Evolution metrics
+        this.app.get('/api/evolution', async (c) => {
+            const metrics = await this.getEvolutionMetrics();
+            return c.json(metrics);
+        });
+        // Detector stats
+        this.app.get('/api/detectors', async (c) => {
+            const stats = this.getDetectorStats();
+            return c.json(stats);
+        });
+        // Recent events
+        this.app.get('/api/events', async (c) => {
+            const limit = parseInt(c.req.query('limit') ?? '50');
+            const events = await this.getRecentEvents(limit);
+            return c.json(events);
+        });
+        // AutoDefect statistics
+        this.app.get('/api/auto-defects', async (c) => {
+            const stats = await this.getAutoDefectStats();
+            return c.json(stats);
+        });
+        // Medical workflow snapshot
+        this.app.get('/api/medical-workflow', async (c) => {
+            const snapshot = this.getMedicalWorkflowSnapshot();
+            return c.json(snapshot);
+        });
+        // Local artifact relay for generated reports
+        this.app.get('/medical-artifact', async (c) => {
+            const path = c.req.query('path');
+            if (!path)
+                return c.text('Missing path', 400);
+            const resolved = resolve(path);
+            const projectRoot = resolve(process.cwd());
+            if (!resolved.startsWith(projectRoot))
+                return c.text('Path not allowed', 403);
+            if (!existsSync(resolved))
+                return c.text('Artifact not found', 404);
+            const body = readFileSync(resolved);
+            const contentType = contentTypeForPath(resolved);
+            return new Response(body, {
+                status: 200,
+                headers: {
+                    'Content-Type': contentType,
+                    'Cache-Control': 'no-store',
+                },
+            });
+        });
+        // ── Write Operations ──────────────────────────────────────────────
+        // Artifact transition
+        this.app.post('/api/artifacts/:id/transition', async (c) => {
+            if (!this.fsm || !this.store) {
+                return c.json({ error: 'FSM or store not available' }, 503);
+            }
+            const id = c.req.param('id');
+            const body = await c.req.json();
+            if (!body.action) {
+                return c.json({ error: 'Missing required field: action' }, 400);
+            }
+            try {
+                const artifact = await this.store.get(id);
+                if (!artifact)
+                    return c.json({ error: `Artifact not found: ${id}` }, 404);
+                // Check available actions first
+                const available = await this.fsm.availableActions(id);
+                if (!available.includes(body.action)) {
+                    return c.json({
+                        error: `Action "${body.action}" not available for ${artifact.type} in state "${artifact.status}"`,
+                        availableActions: available,
+                    }, 400);
+                }
+                const result = await this.fsm.transition(id, body.action, {
+                    actor: { kind: 'system', component: 'dashboard' },
+                    reason: body.reason ?? `Dashboard transition: ${body.action}`,
+                });
+                if (!result.success) {
+                    return c.json({
+                        error: 'Transition blocked by guards',
+                        blockedBy: result.blockedBy,
+                    }, 422);
+                }
+                return c.json({
+                    success: true,
+                    artifact: result.artifact,
+                    effectsExecuted: result.effectsExecuted,
+                });
+            }
+            catch (e) {
+                return c.json({ error: e instanceof Error ? e.message : String(e) }, 500);
+            }
+        });
+        // Get available transitions for an artifact
+        this.app.get('/api/artifacts/:id/actions', async (c) => {
+            if (!this.fsm)
+                return c.json({ error: 'FSM not available' }, 503);
+            const id = c.req.param('id');
+            try {
+                const actions = await this.fsm.availableActions(id);
+                return c.json({ id, actions });
+            }
+            catch (e) {
+                return c.json({ error: e instanceof Error ? e.message : String(e) }, 500);
+            }
+        });
+        // Lesson approve (PROPOSED → APPROVED)
+        this.app.post('/api/lessons/:id/approve', async (c) => {
+            if (!this.fsm || !this.store) {
+                return c.json({ error: 'FSM or store not available' }, 503);
+            }
+            const id = c.req.param('id');
+            try {
+                const artifact = await this.store.get(id);
+                if (!artifact || artifact.type !== 'Lesson') {
+                    return c.json({ error: `Lesson not found: ${id}` }, 404);
+                }
+                if (artifact.status !== 'PROPOSED') {
+                    return c.json({ error: `Lesson is "${artifact.status}", can only approve from PROPOSED` }, 400);
+                }
+                const body = await c.req.json().catch(() => ({}));
+                const result = await this.fsm.transition(id, 'review', {
+                    actor: { kind: 'system', component: 'dashboard' },
+                    reason: body.reason ?? 'Approved via dashboard',
+                });
+                if (!result.success) {
+                    return c.json({ error: 'Transition blocked', blockedBy: result.blockedBy }, 422);
+                }
+                return c.json({ success: true, artifact: result.artifact });
+            }
+            catch (e) {
+                return c.json({ error: e instanceof Error ? e.message : String(e) }, 500);
+            }
+        });
+        // Lesson reject (PROPOSED → REJECTED)
+        this.app.post('/api/lessons/:id/reject', async (c) => {
+            if (!this.fsm || !this.store) {
+                return c.json({ error: 'FSM or store not available' }, 503);
+            }
+            const id = c.req.param('id');
+            try {
+                const artifact = await this.store.get(id);
+                if (!artifact || artifact.type !== 'Lesson') {
+                    return c.json({ error: `Lesson not found: ${id}` }, 404);
+                }
+                if (artifact.status !== 'PROPOSED') {
+                    return c.json({ error: `Lesson is "${artifact.status}", can only reject from PROPOSED` }, 400);
+                }
+                const body = await c.req.json().catch(() => ({}));
+                const result = await this.fsm.transition(id, 'reject', {
+                    actor: { kind: 'system', component: 'dashboard' },
+                    reason: body.reason ?? 'Rejected via dashboard',
+                });
+                if (!result.success) {
+                    return c.json({ error: 'Transition blocked', blockedBy: result.blockedBy }, 422);
+                }
+                return c.json({ success: true, artifact: result.artifact });
+            }
+            catch (e) {
+                return c.json({ error: e instanceof Error ? e.message : String(e) }, 500);
+            }
+        });
+        // Index page - serve static HTML
+        this.app.get('/', (c) => c.html(this.getIndexHtml()));
+    }
+    async getDashboardState() {
+        const [artifacts, evolutionMetrics, detectorStats, autoDefectStats, recentEvents] = await Promise.all([
+            this.getArtifactTree(),
+            this.getEvolutionMetrics(),
+            Promise.resolve(this.getDetectorStats()),
+            this.getAutoDefectStats(),
+            this.getRecentEvents(20),
+        ]);
+        return {
+            artifacts,
+            evolutionMetrics,
+            detectorStats,
+            autoDefectStats,
+            recentEvents,
+            medicalWorkflow: this.getMedicalWorkflowSnapshot(),
+            timestamp: Date.now(),
+        };
+    }
+    async getArtifactTree() {
+        if (!this.store)
+            return [];
+        const artifacts = await this.store.query({});
+        const nodes = [];
+        // Build parent-child relationships
+        const byId = new Map();
+        for (const a of artifacts) {
+            const node = {
+                id: a.id,
+                type: a.type,
+                title: a.title,
+                status: a.status,
+                version: a.version,
+                children: [],
+                gates: a.gates?.map((g) => ({ name: g.name, required: g.required, passed: g.passed })),
+            };
+            byId.set(a.id, node);
+        }
+        // Connect children to parents
+        for (const a of artifacts) {
+            if (a.parents && a.parents.length > 0) {
+                for (const parentId of a.parents) {
+                    const parent = byId.get(parentId);
+                    if (parent) {
+                        const child = byId.get(a.id);
+                        if (child)
+                            parent.children.push(child);
+                    }
+                }
+            }
+        }
+        // Root nodes have no parents
+        for (const a of artifacts) {
+            if (!a.parents || a.parents.length === 0) {
+                const node = byId.get(a.id);
+                if (node)
+                    nodes.push(node);
+            }
+        }
+        return nodes;
+    }
+    async getEvolutionMetrics() {
+        if (!this.evaluator)
+            return null;
+        return await this.evaluator.evaluate();
+    }
+    getDetectorStats() {
+        if (!this.detectorTracker)
+            return [];
+        const allStats = this.detectorTracker.getAllStats();
+        return allStats.map(s => ({
+            name: s.detectorName,
+            totalTriggers: s.totalTriggers,
+            bySeverity: s.bySeverity,
+            lastTrigger: s.recentTriggers.length > 0 ? s.recentTriggers[s.recentTriggers.length - 1]?.triggeredAt : undefined,
+        }));
+    }
+    async getAutoDefectStats() {
+        if (!this.store)
+            return null;
+        // Query all Defect artifacts
+        const defects = await this.store.query({ type: 'Defect' });
+        const autoCreated = defects.filter(d => {
+            const payload = d.payload;
+            return payload.autoCreated === true;
+        });
+        // Count by rootCauseCategory
+        const byRootCause = {};
+        const bySeverity = {};
+        for (const d of autoCreated) {
+            const payload = d.payload;
+            const rootCause = payload.rootCauseCategory ?? 'unknown';
+            const severity = payload.severity ?? 'unknown';
+            byRootCause[rootCause] = (byRootCause[rootCause] ?? 0) + 1;
+            bySeverity[severity] = (bySeverity[severity] ?? 0) + 1;
+        }
+        // Recent defects (last 10)
+        const recentDefects = autoCreated
+            .slice(-10)
+            .reverse()
+            .map(d => {
+            const payload = d.payload;
+            return {
+                id: d.id,
+                title: d.title,
+                rootCause: payload.rootCauseCategory ?? 'unknown',
+                severity: payload.severity ?? 'unknown',
+                detector: payload.detector ?? 'unknown',
+                createdAt: d.createdAt ?? (payload.timestamp ?? 0),
+            };
+        });
+        return {
+            totalDefects: defects.length,
+            autoCreatedCount: autoCreated.length,
+            byRootCause,
+            bySeverity,
+            recentDefects,
+        };
+    }
+    async getRecentEvents(limit) {
+        // Get recent events from EventBus via query
+        const events = await this.bus.query({ limit });
+        return events.map(e => ({
+            type: e.type,
+            timestamp: e.timestamp,
+            artifactId: e.artifactId,
+            data: e.payload,
+        }));
+    }
+    getMedicalWorkflowSnapshot() {
+        return readMedicalWorkflowDashboard(process.cwd());
+    }
+    start() {
+        console.log(`Dashboard server starting on port ${this.port}`);
+        // @ts-expect-error Bun runtime API - types not available in npm package
+        Bun.serve({
+            port: this.port,
+            fetch: this.app.fetch,
+        });
+    }
+    stop() {
+        // Bun server stops automatically when process exits
+        console.log('Dashboard server stopped');
+    }
+    getIndexHtml() {
+        const htmlPath = join(__dirname, 'index.html');
+        return readFileSync(htmlPath, 'utf-8');
+    }
+}
+function contentTypeForPath(path) {
+    const extension = extname(path).toLowerCase();
+    switch (extension) {
+        case '.html':
+            return 'text/html; charset=utf-8';
+        case '.json':
+            return 'application/json; charset=utf-8';
+        case '.md':
+            return 'text/markdown; charset=utf-8';
+        case '.pdf':
+            return 'application/pdf';
+        case '.docx':
+            return 'application/vnd.openxmlformats-officedocument.wordprocessingml.document';
+        case '.zip':
+            return 'application/zip';
+        default:
+            return 'application/octet-stream';
+    }
+}
+//# sourceMappingURL=DashboardServer.js.map

package/dist/dashboard/DashboardServer.js.map

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package/dist/dashboard/MedicalWorkflowData.d.ts

@@ -0,0 +1,155 @@
+export interface MedicalWorkflowStageState {
+    label: string;
+    status: string;
+    startedAt: string | null;
+    finishedAt: string | null;
+    metrics: Record<string, unknown>;
+    error: string | null;
+}
+export interface MedicalWorkflowLiveStatus {
+    run_id: string | null;
+    status: string;
+    target: string;
+    disease: string;
+    cancers: string[];
+    modality: string;
+    risk_level: string;
+    progress_percent: number;
+    current_stage: string | null;
+    current_stage_label: string | null;
+    started_at: string | null;
+    finished_at: string | null;
+    updated_at: string;
+    output_root: string;
+    summary: Record<string, unknown>;
+    artifacts: Record<string, string>;
+    logs: Array<Record<string, unknown>>;
+    stages: Record<string, MedicalWorkflowStageState>;
+}
+export interface MedicalWorkflowArtifactLink {
+    label: string;
+    kind: 'html' | 'pdf' | 'docx' | 'markdown' | 'json' | 'zip' | 'other';
+    path: string;
+    relativePath: string;
+    url: string;
+    exists: boolean;
+}
+export interface MedicalWorkflowMilestone {
+    phase: string;
+    phaseName: string;
+    durationMonths: number | null;
+    successRate: number | null;
+    cumulativeCost: number | null;
+    endDate: string | null;
+}
+export interface MedicalWorkflowBusinessSnapshot {
+    overallSuccessRate: number | null;
+    totalDurationMonths: number | null;
+    totalCostEstimate: number | null;
+    estimatedCompletion: string | null;
+    dataSources: string[];
+    adjustmentDetails: Record<string, unknown>;
+    milestones: MedicalWorkflowMilestone[];
+}
+export interface MedicalWorkflowManuscriptQuality {
+    passed: boolean | null;
+    score: number | null;
+    grade?: string | null;
+    errors: number | null;
+    warnings: number | null;
+    reportPath: string | null;
+}
+export interface MedicalWorkflowManuscriptFactCheck {
+    passed: boolean | null;
+    score: number | null;
+    errors: number | null;
+    warnings: number | null;
+    claimsChecked: number | null;
+    unverifiedClaims: number | null;
+    reportPath: string | null;
+}
+export interface MedicalWorkflowQualityFinding {
+    id: string | null;
+    severity: string | null;
+    message: string | null;
+    evidence: unknown;
+}
+export interface MedicalWorkflowPackageAudit {
+    passed: boolean | null;
+    errors: number | null;
+    warnings: number | null;
+    entryCount: number | null;
+    filesChecked: number | null;
+    markdownRefsChecked: number | null;
+    imageRefsChecked: number | null;
+    readmePresent: boolean | null;
+    manifestPresent: boolean | null;
+    brokenImageRefs: number | null;
+    brokenMarkdownRefs: number | null;
+}
+export interface MedicalWorkflowLiteratureEvidence {
+    count: number | null;
+    agentCacheCount: number | null;
+    llmCount: number | null;
+    ruleBasedCount: number | null;
+    sources: string[];
+    meshCount: number | null;
+    citationCountAvailable: number | null;
+    cacheUsed: boolean | null;
+    cacheHitCount: number | null;
+}
+export interface MedicalWorkflowDeliveryPackage {
+    packagePath: string | null;
+    manifestPath: string | null;
+    exists: boolean;
+    size: number | null;
+    packageAudit: MedicalWorkflowPackageAudit | null;
+    qualityFindings: MedicalWorkflowQualityFinding[];
+    humanReviewTodo: string[];
+    literatureEvidence: MedicalWorkflowLiteratureEvidence | null;
+    disclaimer: string | null;
+}
+export interface MedicalWorkflowMemorySeed {
+    provider: string | null;
+    generatedAt: string | null;
+    recordPath: string | null;
+    summaryPath: string | null;
+    recordReady: boolean;
+    summaryReady: boolean;
+    importOk: boolean | null;
+    sourceFileCount: number | null;
+    stagedFileCount: number | null;
+    missingRoles: string[];
+    warnings: string[];
+}
+export interface MedicalWorkflowLearningCandidate {
+    candidateId: string | null;
+    generatedAt: string | null;
+    recordPath: string | null;
+    summaryPath: string | null;
+    candidatePath: string | null;
+    candidateMarkdownPath: string | null;
+    recordReady: boolean;
+    summaryReady: boolean;
+    recommendedAction: string | null;
+    promotable: boolean;
+    brainIngestOk: boolean | null;
+    brainNodeId: string | null;
+    warnings: string[];
+}
+export interface MedicalWorkflowDashboardData {
+    available: boolean;
+    projectRoot: string;
+    runtimeFile: string;
+    latestUpdatedAt: string | null;
+    liveStatus: MedicalWorkflowLiveStatus | null;
+    business: MedicalWorkflowBusinessSnapshot | null;
+    manuscriptQuality: MedicalWorkflowManuscriptQuality | null;
+    manuscriptFactCheck: MedicalWorkflowManuscriptFactCheck | null;
+    deliveryPackage: MedicalWorkflowDeliveryPackage | null;
+    memorySeed: MedicalWorkflowMemorySeed | null;
+    learningCandidate: MedicalWorkflowLearningCandidate | null;
+    reports: MedicalWorkflowArtifactLink[];
+    errors: string[];
+}
+export declare function readMedicalWorkflowDashboard(projectDir?: string): MedicalWorkflowDashboardData;